@sudosandwich/limps 3.2.0 → 3.3.0

package/README.md

@@ -62,7 +62,7 @@ limps config print --client claude-code
 
 That's it. Your AI assistant now has access to your documents via HTTP transport. The folder can be anywhere—local, synced, or in a repo; limps does not require a git repository or a `plans/` directory.
 
-**Tip:** `limps status-server` shows the status of the current project if a config is found in the working directory (or passed via `--config`). Run it from a directory where no limps config can be resolved to list all running limps daemons on your system.
+**Tip:** `limps server-status` always includes system-wide daemon discovery. If a project config is found (or passed via `--config`), it also reconciles the configured project target against that global list.
 
 ## Features
 
@@ -81,7 +81,7 @@ That's it. Your AI assistant now has access to your documents via HTTP transport
 
 - **Local only** — Your data stays on disk (SQLite index + your files). No cloud, no subscription.
 - **Restart after changes** — If you change the indexed folder or config, restart the MCP server (or rely on the file watcher) so the index and tools reflect the current state.
-- **Daemon management** — The HTTP server runs as a background process. Use `limps start`, `limps stop`, and `limps status-server` to manage the daemon lifecycle. PID files are stored in OS-standard directories for system-wide awareness.
+- **Daemon management** — The HTTP server runs as a background process. Use `limps start`, `limps stop`, and `limps server-status` to manage the daemon lifecycle. PID files are stored in OS-standard directories for system-wide awareness.
 - **Sandboxed user code** — `process_doc` and `process_docs` run your JavaScript in a QuickJS sandbox with time and memory limits; no network or Node APIs.
 - **One optional network call** — `limps version --check` fetches from the npm registry to compare versions. All other commands (serve, init, list, search, create/update/delete docs, process_doc, etc.) do **not** contact the internet. Omit `version --check` if you want zero external calls.
 
@@ -320,7 +320,7 @@ limps v3 uses **HTTP transport exclusively** via a persistent daemon. This allow
 limps start
 
 # Check status (shows uptime, sessions, PID)
-limps status-server
+limps server-status
 
 # Stop the daemon
 limps stop
@@ -381,7 +381,7 @@ Example custom server config:
 - **Linux**: `$XDG_DATA_HOME/limps/pids/` or `~/.local/share/limps/pids/`
 - **Windows**: `%APPDATA%/limps/pids/`
 
-This enables `limps status-server` to perform system-wide daemon discovery when no project configuration can be resolved; when a limps config is found for the current directory, the CLI runs in project mode and reports status for that project instead.
+This enables `limps server-status` to perform system-wide daemon discovery from any directory. When a limps config is found for the current directory (or passed via `--config`), the CLI also reports and reconciles that project's configured target.
 
 - **Remote clients**: Use an MCP-compatible HTTPS proxy for remote clients (e.g., ChatGPT).
 
@@ -418,11 +418,34 @@ Each PID file is named by port number (`limps-{port}.pid`) to enable system-wide
   "port": 4269,
   "host": "127.0.0.1",
   "startedAt": "2026-02-08T12:00:00.000Z",
-  "configPath": "/path/to/project/.limps/config.json"
+  "configPath": "/path/to/project/.limps/config.json",
+  "logPath": "/Users/you/Library/Application Support/limps/logs/limps-4269.log"
 }
 ```
 
-This port-based naming allows `limps status-server` to find all running daemons across different projects without needing a config file.
+This port-based naming allows `limps server-status` to find all running daemons across different projects without needing a config file.
+
+Daemon logs are written to OS-standard application log directories:
+
+**macOS:**
+```
+~/Library/Application Support/limps/logs/
+```
+
+**Linux:**
+```
+$XDG_DATA_HOME/limps/logs/
+# or if XDG_DATA_HOME is not set:
+~/.local/share/limps/logs/
+```
+
+**Windows:**
+```
+%APPDATA%/limps/logs/
+```
+
+Daemon logs are intentionally operational-only: limps redacts uncaught exception/rejection payloads and does not persist raw AI prompt/response content.
+Daemon log files are append-only and are not auto-rotated; if you run long-lived daemons, rotate or truncate these files with your system tooling.
 
 ### Starting the Daemon
 
@@ -432,6 +455,7 @@ This port-based naming allows `limps status-server` to find all running daemons
 limps start
 # → Daemon starts on http://127.0.0.1:4269/mcp
 # → PID file written to OS-standard location
+# → Logs written to OS-standard log file (append mode)
 # → Process detaches and runs in background
 ```
 
@@ -475,34 +499,43 @@ The `start` command performs health verification by polling the `/health` endpoi
 
 ### Checking Daemon Status
 
-**Project mode (when config is found):**
+**With project config (reconciled with global discovery):**
 
 ```bash
 # From within a project directory with .limps/config.json
-limps status-server
+limps server-status
+# Project target:
 # limps server is running
 # PID: 12345 | 127.0.0.1:4269
 # Uptime: 2h 15m
 # Sessions: 3
+# Log: /Users/you/Library/Application Support/limps/logs/limps-4269.log
+# Project target is present in system-wide daemon discovery.
+# System-wide daemons:
+# 127.0.0.1:4269 (PID 12345) [project target]
+#   Uptime: 2h 15m | Sessions: 3
+#   Log: /Users/you/Library/Application Support/limps/logs/limps-4269.log
 
 # Or specify config explicitly
-limps status-server --config /path/to/.limps/config.json
+limps server-status --config /path/to/.limps/config.json
 ```
 
-**System-wide discovery (when no config is found):**
+**Without project config (global discovery only):**
 
 ```bash
 # From a directory without a limps config
 cd /tmp
-limps status-server
+limps server-status
 # Found 2 running daemons:
 # 127.0.0.1:4269 (PID 12345)
 #   Uptime: 2h 15m | Sessions: 3
+#   Log: /Users/you/Library/Application Support/limps/logs/limps-4269.log
 # 127.0.0.1:8080 (PID 67890)
 #   Uptime: 45m 30s | Sessions: 1
+#   Log: /Users/you/Library/Application Support/limps/logs/limps-8080.log
 ```
 
-When `limps status-server` cannot resolve a config file in the current directory (and no `--config` is provided), it scans the system PID directory and reports all running limps daemons. When a config is found, it shows only that project's daemon status.
+When `limps server-status` cannot resolve a config file in the current directory (and no `--config` is provided), it reports global daemon discovery only. When a config is found, it reports both the configured project target and the global daemon list.
 
 ### Stopping the Daemon
 
@@ -615,7 +648,7 @@ Discover all running daemons (run from a directory without a limps config):
 
 ```bash
 cd /tmp
-limps status-server
+limps server-status
 # Found 2 running daemons:
 # 127.0.0.1:4269 (PID 12345)
 #   Uptime: 2h 15m | Sessions: 3
@@ -643,7 +676,7 @@ limps init [path]             # Initialize new project
 limps start                   # Start HTTP daemon (background by default)
 limps start --foreground      # Start in foreground (debugging mode)
 limps stop                    # Stop HTTP daemon
-limps status-server           # Show daemon status (current project or all daemons)
+limps server-status           # Show daemon status (current project or all daemons)
 limps config show             # Display current config
 limps config print            # Print MCP client config snippets
 ```
@@ -745,7 +778,7 @@ limps start
 **Resolution:**
 1. **Kill the existing process**: `kill 12345`
 2. **Or use a different port**: `limps start --port 8080`
-3. **Check if it's another limps daemon**: `limps status-server` (if so, use `limps stop` first)
+3. **Check if it's another limps daemon**: `limps server-status` (if so, use `limps stop` first)
 
 **"Daemon may have failed to start" error:**
 
@@ -757,7 +790,7 @@ limps start
 ```
 
 **Resolution:**
-1. **Run in foreground to see logs**: `limps start --foreground`
+1. **Check daemon log path**: `limps server-status` (or run foreground mode: `limps start --foreground`)
 2. **Check for permission issues**: Ensure you have write access to the PID directory
 3. **Verify port is accessible**: Try `curl http://127.0.0.1:4269/health`
 4. **Enable debug logging**: `DEBUG=1 limps start --foreground`
@@ -794,7 +827,7 @@ mkdir %APPDATA%\limps\pids
 
 **TIMEOUT error:**
 
-The daemon did not respond within the configured timeout. Each health-check request has its own timeout (for example, 1000ms during the final `limps start` check and 3000ms for `status-server`), and during startup limps will poll for up to about 5 seconds before reporting "Daemon may have failed to start".
+The daemon did not respond within the configured timeout. Each health-check request has its own timeout (for example, 1000ms during the final `limps start` check and 3000ms for `server-status`), and during startup limps will poll for up to about 5 seconds before reporting "Daemon may have failed to start".
 
 **Common causes:**
 - System resource constraints (high CPU/memory usage)
@@ -803,7 +836,7 @@ The daemon did not respond within the configured timeout. Each health-check requ
 
 **Resolution:**
 1. Check system resources: `top` or Activity Monitor
-2. Wait a bit longer and retry: `limps status-server`
+2. Wait a bit longer and retry: `limps server-status`
 3. Run in foreground to see progress: `limps start --foreground`
 
 **NETWORK_ERROR:**
@@ -816,15 +849,15 @@ Cannot establish connection to the daemon.
 - Incorrect host/port configuration
 
 **Resolution:**
-1. Verify daemon is running: `limps status-server`
+1. Verify daemon is running: `limps server-status`
 2. Check firewall settings for port 4269
 3. Try `curl http://127.0.0.1:4269/health` manually
-4. Check daemon logs: `limps start --foreground`
+4. Check daemon logs: see `Log:` path in `limps server-status` output
 
 ### Stale PID Files
 
 limps automatically cleans up stale PID files when:
-- Running `limps status-server` (discovers and removes stale files)
+- Running `limps server-status` (discovers and removes stale files)
 - Running `limps start` (removes stale file for the target port)
 - The daemon shuts down gracefully with `limps stop`
 
@@ -858,7 +891,7 @@ limps start
 This is expected behavior — limps prevents multiple daemons on the same port using PID-based locking.
 
 **Resolution:**
-1. **Check all running daemons**: `limps status-server`
+1. **Check all running daemons**: `limps server-status`
 2. **Stop the existing daemon**: `limps stop`
 3. **Or start on a different port**: `limps start --port 8080`
 
@@ -869,7 +902,7 @@ If MCP clients can't connect to the daemon, verify connectivity step by step:
 **1. Check daemon status:**
 
 ```bash
-limps status-server
+limps server-status
 # Should show daemon running with healthy status
 ```
 
@@ -913,6 +946,64 @@ Ensure the URL in your client config matches the daemon:
 }
 ```
 
+### Config Resolution Issues
+
+**Problem: limps is using the wrong config file**
+
+If `limps config path` shows a different config than expected, use the diagnostic command to understand why:
+
+```bash
+limps config show-resolution
+```
+
+This shows all three priority levels for config resolution:
+
+1. **CLI `--config` argument** (highest priority)
+2. **`MCP_PLANNING_CONFIG` environment variable** (second priority)
+3. **Local `.limps/config.json`** (searches up from cwd)
+
+**Common causes:**
+
+- **Environment variable set**: Check if `MCP_PLANNING_CONFIG` is set in your shell or IDE. This takes priority over local config files.
+  ```bash
+  # Check if set
+  echo $MCP_PLANNING_CONFIG
+  
+  # Unset if needed
+  unset MCP_PLANNING_CONFIG
+  ```
+
+- **Wrong working directory**: Config search starts from your current working directory. Make sure you're in the right directory when running limps commands.
+  ```bash
+  # Check current directory
+  pwd
+  
+  # Navigate to your project
+  cd /path/to/your/project
+  ```
+
+- **Missing `.limps/config.json`**: The config file must be in a `.limps` subdirectory, not at the project root.
+  ```bash
+  # Correct location
+  /path/to/project/.limps/config.json
+  
+  # Wrong - won't be found
+  /path/to/project/config.json
+  ```
+
+**Quick fixes:**
+
+```bash
+# Override with explicit path
+limps list-plans --config /path/to/project/.limps/config.json
+
+# Or set environment variable
+export MCP_PLANNING_CONFIG=/path/to/project/.limps/config.json
+
+# Or initialize a new config in current directory
+limps init
+```
+
 ## MCP Tools
 
 limps exposes MCP tools for AI assistants:

package/dist/agent-parser.d.ts

@@ -69,7 +69,7 @@ export declare function extractAgentNumber(filename: string): string | null;
  * Extract plan folder from agent file path.
  *
  * @example
- * extractPlanFolder("/path/to/plans/0022-datagrid-stories/agents/000_agent.agent.md")
+ * extractPlanFolder("/path/to/0022-datagrid-stories/agents/000_agent.agent.md")
  * // "0022-datagrid-stories"
  *
  * @param path - Full path to agent file

package/dist/agent-parser.d.ts.map

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package/dist/agent-parser.js

@@ -63,16 +63,20 @@ export function extractAgentNumber(filename) {
  * Extract plan folder from agent file path.
  *
  * @example
- * extractPlanFolder("/path/to/plans/0022-datagrid-stories/agents/000_agent.agent.md")
+ * extractPlanFolder("/path/to/0022-datagrid-stories/agents/000_agent.agent.md")
  * // "0022-datagrid-stories"
  *
  * @param path - Full path to agent file
  * @returns Plan folder name or null if not found
  */
 export function extractPlanFolder(path) {
-    // Match plans/<folder>/agents/
-    const match = path.match(/plans[/\\]([^/\\]+)[/\\]agents[/\\]/);
-    return match ? match[1] : null;
+    // Plan folder is the path segment directly before "agents"
+    const segments = path.split(/[/\\]+/).filter(Boolean);
+    const agentsIndex = segments.lastIndexOf('agents');
+    if (agentsIndex <= 0) {
+        return null;
+    }
+    return segments[agentsIndex - 1] || null;
 }
 /**
  * Build task ID from plan folder and agent number.

package/dist/agent-parser.js.map

@@ -1 +1 @@
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package/dist/cli/docs-create.d.ts

@@ -0,0 +1,34 @@
+/**
+ * CLI command: create-doc
+ * Create new documents with optional template.
+ */
+import type { ServerConfig } from '../config.js';
+import type { CreateDocOutput } from '../tools/create-doc.js';
+/**
+ * Options for creating documents.
+ */
+export interface CreateDocOptions {
+    path: string;
+    content: string;
+    template?: 'addendum' | 'research' | 'example' | 'none';
+}
+/**
+ * Get document creation result from the tool handler.
+ * Returns structured data for rendering.
+ *
+ * @param config - Server configuration
+ * @param options - Creation options
+ * @returns Creation result or error message
+ */
+export declare function getCreateDocData(config: ServerConfig, options: CreateDocOptions): Promise<CreateDocOutput | {
+    error: string;
+}>;
+/**
+ * Create a new document.
+ *
+ * @param config - Server configuration
+ * @param options - Creation options
+ * @returns Formatted string output for CLI
+ */
+export declare function createDoc(config: ServerConfig, options: CreateDocOptions): Promise<string>;
+//# sourceMappingURL=docs-create.d.ts.map

package/dist/cli/docs-create.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"docs-create.d.ts","sourceRoot":"","sources":["../../src/cli/docs-create.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,cAAc,CAAC;AACjD,OAAO,KAAK,EAAE,eAAe,EAAkB,MAAM,wBAAwB,CAAC;AAM9E;;GAEG;AACH,MAAM,WAAW,gBAAgB;IAC/B,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;IAChB,QAAQ,CAAC,EAAE,UAAU,GAAG,UAAU,GAAG,SAAS,GAAG,MAAM,CAAC;CACzD;AAED;;;;;;;GAOG;AACH,wBAAsB,gBAAgB,CACpC,MAAM,EAAE,YAAY,EACpB,OAAO,EAAE,gBAAgB,GACxB,OAAO,CAAC,eAAe,GAAG;IAAE,KAAK,EAAE,MAAM,CAAA;CAAE,CAAC,CA+B9C;AAED;;;;;;GAMG;AACH,wBAAsB,SAAS,CAAC,MAAM,EAAE,YAAY,EAAE,OAAO,EAAE,gBAAgB,GAAG,OAAO,CAAC,MAAM,CAAC,CAmBhG"}

package/dist/cli/docs-create.js

@@ -0,0 +1,70 @@
+/**
+ * CLI command: create-doc
+ * Create new documents with optional template.
+ */
+import { handleCreateDoc } from '../tools/create-doc.js';
+import { initializeDatabase, createSchema } from '../indexer.js';
+import { resolve } from 'path';
+import { mkdirSync } from 'fs';
+/**
+ * Get document creation result from the tool handler.
+ * Returns structured data for rendering.
+ *
+ * @param config - Server configuration
+ * @param options - Creation options
+ * @returns Creation result or error message
+ */
+export async function getCreateDocData(config, options) {
+    // Ensure data directory exists
+    mkdirSync(config.dataPath, { recursive: true });
+    const dbPath = resolve(config.dataPath, 'documents.sqlite');
+    const db = initializeDatabase(dbPath);
+    try {
+        createSchema(db);
+        const input = {
+            path: options.path,
+            content: options.content,
+            template: options.template || 'none',
+            prettyPrint: true,
+        };
+        const result = await handleCreateDoc(input, { config, db });
+        if (result.isError) {
+            const errorText = result.content[0]?.text || 'Unknown error';
+            return { error: errorText };
+        }
+        const data = JSON.parse(result.content[0].text);
+        return data;
+    }
+    catch (error) {
+        return {
+            error: error instanceof Error ? error.message : String(error),
+        };
+    }
+    finally {
+        db.close();
+    }
+}
+/**
+ * Create a new document.
+ *
+ * @param config - Server configuration
+ * @param options - Creation options
+ * @returns Formatted string output for CLI
+ */
+export async function createDoc(config, options) {
+    const result = await getCreateDocData(config, options);
+    if ('error' in result) {
+        return `Error: ${result.error}`;
+    }
+    const lines = [];
+    lines.push('✓ Document created successfully');
+    lines.push('');
+    lines.push(`Path: ${result.path}`);
+    lines.push(`Size: ${(result.size / 1024).toFixed(1)} KB`);
+    lines.push(`Type: ${result.type}`);
+    if (options.template && options.template !== 'none') {
+        lines.push(`Template: ${options.template}`);
+    }
+    return lines.join('\n');
+}
+//# sourceMappingURL=docs-create.js.map

package/dist/cli/docs-create.js.map

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package/dist/cli/docs-delete.d.ts

@@ -0,0 +1,34 @@
+/**
+ * CLI command: delete-doc
+ * Delete documents with confirmation and backup.
+ */
+import type { ServerConfig } from '../config.js';
+import type { DeleteDocOutput } from '../tools/delete-doc.js';
+/**
+ * Options for deleting documents.
+ */
+export interface DeleteDocOptions {
+    path: string;
+    confirm?: boolean;
+    permanent?: boolean;
+}
+/**
+ * Get document deletion result from the tool handler.
+ * Returns structured data for rendering.
+ *
+ * @param config - Server configuration
+ * @param options - Deletion options
+ * @returns Deletion result or error message
+ */
+export declare function getDeleteDocData(config: ServerConfig, options: DeleteDocOptions): Promise<DeleteDocOutput | {
+    error: string;
+}>;
+/**
+ * Delete a document.
+ *
+ * @param config - Server configuration
+ * @param options - Deletion options
+ * @returns Formatted string output for CLI
+ */
+export declare function deleteDoc(config: ServerConfig, options: DeleteDocOptions): Promise<string>;
+//# sourceMappingURL=docs-delete.d.ts.map

package/dist/cli/docs-delete.d.ts.map

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package/dist/cli/docs-delete.js

@@ -0,0 +1,84 @@
+/**
+ * CLI command: delete-doc
+ * Delete documents with confirmation and backup.
+ */
+import { handleDeleteDoc } from '../tools/delete-doc.js';
+import { initializeDatabase, createSchema } from '../indexer.js';
+import { resolve } from 'path';
+import { mkdirSync } from 'fs';
+/**
+ * Get document deletion result from the tool handler.
+ * Returns structured data for rendering.
+ *
+ * @param config - Server configuration
+ * @param options - Deletion options
+ * @returns Deletion result or error message
+ */
+export async function getDeleteDocData(config, options) {
+    // Ensure data directory exists
+    mkdirSync(config.dataPath, { recursive: true });
+    const dbPath = resolve(config.dataPath, 'documents.sqlite');
+    const db = initializeDatabase(dbPath);
+    try {
+        createSchema(db);
+        const input = {
+            path: options.path,
+            confirm: options.confirm || false,
+            permanent: options.permanent || false,
+        };
+        const result = await handleDeleteDoc(input, { config, db });
+        if (result.isError) {
+            const errorText = result.content[0]?.text || 'Unknown error';
+            return { error: errorText };
+        }
+        const data = JSON.parse(result.content[0].text);
+        return data;
+    }
+    catch (error) {
+        return {
+            error: error instanceof Error ? error.message : String(error),
+        };
+    }
+    finally {
+        db.close();
+    }
+}
+/**
+ * Delete a document.
+ *
+ * @param config - Server configuration
+ * @param options - Deletion options
+ * @returns Formatted string output for CLI
+ */
+export async function deleteDoc(config, options) {
+    const result = await getDeleteDocData(config, options);
+    if ('error' in result) {
+        return `Error: ${result.error}`;
+    }
+    const lines = [];
+    if (result.pending) {
+        lines.push('⚠️  Deletion pending confirmation');
+        lines.push('');
+        lines.push(`Path: ${result.path}`);
+        if (result.preview) {
+            lines.push('');
+            lines.push('Preview:');
+            lines.push(result.preview);
+        }
+        lines.push('');
+        lines.push('Run with --confirm to proceed');
+    }
+    else if (result.deleted) {
+        lines.push('✓ Document deleted successfully');
+        lines.push('');
+        lines.push(`Path: ${result.path}`);
+        if (result.trash) {
+            lines.push(`Moved to trash: ${result.trash}`);
+        }
+        if (result.backup) {
+            lines.push(`Backup: ${result.backup}`);
+        }
+    }
+    return lines.join('\n');
+}
+//# sourceMappingURL=docs-delete.js.map

package/dist/cli/docs-delete.js.map

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