@sudosandwich/limps 2.13.1 → 2.13.3

package/dist/cli/graph-reindex.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"graph-reindex.d.ts","sourceRoot":"","sources":["../../src/cli/graph-reindex.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,QAAQ,IAAI,YAAY,EAAE,MAAM,gBAAgB,CAAC;AAC/D,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,cAAc,CAAC;AAIjD,MAAM,WAAW,mBAAmB;IAClC,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,WAAW,CAAC,EAAE,OAAO,CAAC;CACvB;AAED,MAAM,WAAW,kBAAkB;IACjC,cAAc,EAAE,MAAM,CAAC;IACvB,gBAAgB,EAAE,MAAM,CAAC;IACzB,qBAAqB,EAAE,MAAM,CAAC;IAC9B,QAAQ,EAAE,MAAM,EAAE,CAAC;CACpB;AAED,wBAAgB,YAAY,CAC1B,MAAM,EAAE,YAAY,EACpB,EAAE,EAAE,YAAY,EAChB,OAAO,CAAC,EAAE,mBAAmB,GAC5B,kBAAkB,CAkFpB"}

package/dist/cli/graph-reindex.js

@@ -12,16 +12,57 @@ export function graphReindex(config, db, options) {
         warnings: [],
     };
     const planDirs = findPlanDirs(config.plansPath, options?.planId);
+    const extractionBatch = [];
     for (const planDir of planDirs) {
         const extraction = extractor.extractPlan(planDir);
         result.warnings.push(...extraction.warnings);
+        const localIdToCanonical = new Map();
+        for (const entity of extraction.entities) {
+            localIdToCanonical.set(entity.id, entity.canonicalId);
+        }
+        extractionBatch.push({ extraction, localIdToCanonical });
+        result.plansProcessed++;
+    }
+    for (const { extraction } of extractionBatch) {
         if (extraction.entities.length > 0) {
             result.entitiesUpserted += storage.bulkUpsertEntities(extraction.entities);
         }
+    }
+    const canonicalToDbId = new Map();
+    for (const { localIdToCanonical } of extractionBatch) {
+        for (const canonicalId of localIdToCanonical.values()) {
+            if (canonicalToDbId.has(canonicalId)) {
+                continue;
+            }
+            const dbEntity = storage.getEntity(canonicalId);
+            if (dbEntity) {
+                canonicalToDbId.set(canonicalId, dbEntity.id);
+            }
+        }
+    }
+    for (const { extraction, localIdToCanonical } of extractionBatch) {
         if (extraction.relationships.length > 0) {
-            result.relationshipsUpserted += storage.bulkUpsertRelationships(extraction.relationships);
+            const remappedRelationships = extraction.relationships
+                .map((rel) => {
+                const sourceCanonical = localIdToCanonical.get(rel.sourceId);
+                const targetCanonical = localIdToCanonical.get(rel.targetId);
+                if (!sourceCanonical || !targetCanonical) {
+                    return null;
+                }
+                const dbSourceId = canonicalToDbId.get(sourceCanonical);
+                const dbTargetId = canonicalToDbId.get(targetCanonical);
+                if (!dbSourceId || !dbTargetId) {
+                    return null;
+                }
+                return {
+                    ...rel,
+                    sourceId: dbSourceId,
+                    targetId: dbTargetId,
+                };
+            })
+                .filter((rel) => rel !== null);
+            result.relationshipsUpserted += storage.bulkUpsertRelationships(remappedRelationships);
         }
-        result.plansProcessed++;
     }
     // Update last_indexed timestamp
     db.prepare("INSERT OR REPLACE INTO graph_meta (key, value, updated_at) VALUES ('last_indexed', ?, datetime('now'))").run(new Date().toISOString());

package/dist/cli/graph-reindex.js.map

@@ -1 +1 @@
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+{"version":3,"file":"graph-reindex.js","sourceRoot":"","sources":["../../src/cli/graph-reindex.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,WAAW,EAAE,MAAM,IAAI,CAAC;AAC7C,OAAO,EAAE,IAAI,EAAE,MAAM,MAAM,CAAC;AAG5B,OAAO,EAAE,YAAY,EAAE,MAAM,qBAAqB,CAAC;AACnD,OAAO,EAAE,eAAe,EAAyB,MAAM,uBAAuB,CAAC;AAc/E,MAAM,UAAU,YAAY,CAC1B,MAAoB,EACpB,EAAgB,EAChB,OAA6B;IAE7B,MAAM,OAAO,GAAG,IAAI,YAAY,CAAC,EAAE,CAAC,CAAC;IACrC,MAAM,SAAS,GAAG,IAAI,eAAe,EAAE,CAAC;IACxC,MAAM,MAAM,GAAuB;QACjC,cAAc,EAAE,CAAC;QACjB,gBAAgB,EAAE,CAAC;QACnB,qBAAqB,EAAE,CAAC;QACxB,QAAQ,EAAE,EAAE;KACb,CAAC;IAEF,MAAM,QAAQ,GAAG,YAAY,CAAC,MAAM,CAAC,SAAS,EAAE,OAAO,EAAE,MAAM,CAAC,CAAC;IAEjE,MAAM,eAAe,GAGf,EAAE,CAAC;IACT,KAAK,MAAM,OAAO,IAAI,QAAQ,EAAE,CAAC;QAC/B,MAAM,UAAU,GAAG,SAAS,CAAC,WAAW,CAAC,OAAO,CAAC,CAAC;QAClD,MAAM,CAAC,QAAQ,CAAC,IAAI,CAAC,GAAG,UAAU,CAAC,QAAQ,CAAC,CAAC;QAC7C,MAAM,kBAAkB,GAAG,IAAI,GAAG,EAAkB,CAAC;QACrD,KAAK,MAAM,MAAM,IAAI,UAAU,CAAC,QAAQ,EAAE,CAAC;YACzC,kBAAkB,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,EAAE,MAAM,CAAC,WAAW,CAAC,CAAC;QACxD,CAAC;QACD,eAAe,CAAC,IAAI,CAAC,EAAE,UAAU,EAAE,kBAAkB,EAAE,CAAC,CAAC;QACzD,MAAM,CAAC,cAAc,EAAE,CAAC;IAC1B,CAAC;IAED,KAAK,MAAM,EAAE,UAAU,EAAE,IAAI,eAAe,EAAE,CAAC;QAC7C,IAAI,UAAU,CAAC,QAAQ,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YACnC,MAAM,CAAC,gBAAgB,IAAI,OAAO,CAAC,kBAAkB,CAAC,UAAU,CAAC,QAAQ,CAAC,CAAC;QAC7E,CAAC;IACH,CAAC;IAED,MAAM,eAAe,GAAG,IAAI,GAAG,EAAkB,CAAC;IAClD,KAAK,MAAM,EAAE,kBAAkB,EAAE,IAAI,eAAe,EAAE,CAAC;QACrD,KAAK,MAAM,WAAW,IAAI,kBAAkB,CAAC,MAAM,EAAE,EAAE,CAAC;YACtD,IAAI,eAAe,CAAC,GAAG,CAAC,WAAW,CAAC,EAAE,CAAC;gBACrC,SAAS;YACX,CAAC;YACD,MAAM,QAAQ,GAAG,OAAO,CAAC,SAAS,CAAC,WAAW,CAAC,CAAC;YAChD,IAAI,QAAQ,EAAE,CAAC;gBACb,eAAe,CAAC,GAAG,CAAC,WAAW,EAAE,QAAQ,CAAC,EAAE,CAAC,CAAC;YAChD,CAAC;QACH,CAAC;IACH,CAAC;IAED,KAAK,MAAM,EAAE,UAAU,EAAE,kBAAkB,EAAE,IAAI,eAAe,EAAE,CAAC;QACjE,IAAI,UAAU,CAAC,aAAa,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YACxC,MAAM,qBAAqB,GAAG,UAAU,CAAC,aAAa;iBACnD,GAAG,CAAC,CAAC,GAAG,EAAE,EAAE;gBACX,MAAM,eAAe,GAAG,kBAAkB,CAAC,GAAG,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC;gBAC7D,MAAM,eAAe,GAAG,kBAAkB,CAAC,GAAG,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC;gBAE7D,IAAI,CAAC,eAAe,IAAI,CAAC,eAAe,EAAE,CAAC;oBACzC,OAAO,IAAI,CAAC;gBACd,CAAC;gBAED,MAAM,UAAU,GAAG,eAAe,CAAC,GAAG,CAAC,eAAe,CAAC,CAAC;gBACxD,MAAM,UAAU,GAAG,eAAe,CAAC,GAAG,CAAC,eAAe,CAAC,CAAC;gBAExD,IAAI,CAAC,UAAU,IAAI,CAAC,UAAU,EAAE,CAAC;oBAC/B,OAAO,IAAI,CAAC;gBACd,CAAC;gBAED,OAAO;oBACL,GAAG,GAAG;oBACN,QAAQ,EAAE,UAAU;oBACpB,QAAQ,EAAE,UAAU;iBACrB,CAAC;YACJ,CAAC,CAAC;iBACD,MAAM,CAAC,CAAC,GAAG,EAAkC,EAAE,CAAC,GAAG,KAAK,IAAI,CAAC,CAAC;YAEjE,MAAM,CAAC,qBAAqB,IAAI,OAAO,CAAC,uBAAuB,CAAC,qBAAqB,CAAC,CAAC;QACzF,CAAC;IACH,CAAC;IAED,gCAAgC;IAChC,EAAE,CAAC,OAAO,CACR,wGAAwG,CACzG,CAAC,GAAG,CAAC,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE,CAAC,CAAC;IAEhC,OAAO,MAAM,CAAC;AAChB,CAAC;AAED,SAAS,YAAY,CAAC,SAAiB,EAAE,YAAqB;IAC5D,IAAI,CAAC,UAAU,CAAC,SAAS,CAAC;QAAE,OAAO,EAAE,CAAC;IAEtC,MAAM,OAAO,GAAG,WAAW,CAAC,SAAS,EAAE,EAAE,aAAa,EAAE,IAAI,EAAE,CAAC,CAAC;IAChE,MAAM,IAAI,GAAa,EAAE,CAAC;IAE1B,KAAK,MAAM,KAAK,IAAI,OAAO,EAAE,CAAC;QAC5B,IAAI,CAAC,KAAK,CAAC,WAAW,EAAE;YAAE,SAAS;QACnC,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC;YAAE,SAAS;QAEzC,IAAI,YAAY,EAAE,CAAC;YACjB,MAAM,OAAO,GAAG,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,UAAU,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;YAClD,IAAI,OAAO,KAAK,YAAY,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,QAAQ,CAAC,YAAY,CAAC;gBAAE,SAAS;QAC/E,CAAC;QAED,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,SAAS,EAAE,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC;IACzC,CAAC;IAED,OAAO,IAAI,CAAC,IAAI,EAAE,CAAC;AACrB,CAAC"}

package/dist/cli/graph-watch.d.ts

@@ -6,5 +6,5 @@ export interface GraphWatchOptions {
     webhookUrl?: string;
     filePath?: string;
 }
-export declare function startGraphWatch(config: ServerConfig, db: DatabaseType, options?: GraphWatchOptions): GraphWatcher;
+export declare function startGraphWatch(config: ServerConfig, db: DatabaseType, options?: GraphWatchOptions): Promise<GraphWatcher>;
 //# sourceMappingURL=graph-watch.d.ts.map

package/dist/cli/graph-watch.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"graph-watch.d.ts","sourceRoot":"","sources":["../../src/cli/graph-watch.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,QAAQ,IAAI,YAAY,EAAE,MAAM,gBAAgB,CAAC;AAC/D,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,cAAc,CAAC;AAEjD,OAAO,EAAE,YAAY,EAA4B,MAAM,qBAAqB,CAAC;AAG7E,MAAM,WAAW,iBAAiB;IAChC,QAAQ,CAAC,EAAE,MAAM,EAAE,CAAC;IACpB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,QAAQ,CAAC,EAAE,MAAM,CAAC;CACnB;AAED,wBAAgB,eAAe,CAC7B,MAAM,EAAE,YAAY,EACpB,EAAE,EAAE,YAAY,EAChB,OAAO,CAAC,EAAE,iBAAiB,GAC1B,YAAY,CAiBd"}
+{"version":3,"file":"graph-watch.d.ts","sourceRoot":"","sources":["../../src/cli/graph-watch.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,QAAQ,IAAI,YAAY,EAAE,MAAM,gBAAgB,CAAC;AAC/D,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,cAAc,CAAC;AAEjD,OAAO,EAAE,YAAY,EAA4B,MAAM,qBAAqB,CAAC;AAG7E,MAAM,WAAW,iBAAiB;IAChC,QAAQ,CAAC,EAAE,MAAM,EAAE,CAAC;IACpB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,QAAQ,CAAC,EAAE,MAAM,CAAC;CACnB;AAED,wBAAsB,eAAe,CACnC,MAAM,EAAE,YAAY,EACpB,EAAE,EAAE,YAAY,EAChB,OAAO,CAAC,EAAE,iBAAiB,GAC1B,OAAO,CAAC,YAAY,CAAC,CAiBvB"}

package/dist/cli/graph-watch.js

@@ -1,6 +1,6 @@
 import { GraphStorage } from '../graph/storage.js';
 import { GraphWatcher } from '../graph/watcher.js';
-export function startGraphWatch(config, db, options) {
+export async function startGraphWatch(config, db, options) {
     const storage = new GraphStorage(db);
     const channels = (options?.channels ?? ['log']);
     const watcherOptions = {
@@ -12,7 +12,7 @@ export function startGraphWatch(config, db, options) {
         },
     };
     const watcher = new GraphWatcher(storage, watcherOptions);
-    watcher.start();
+    await watcher.start();
     return watcher;
 }
 //# sourceMappingURL=graph-watch.js.map

package/dist/cli/graph-watch.js.map

@@ -1 +1 @@
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+{"version":3,"file":"graph-watch.js","sourceRoot":"","sources":["../../src/cli/graph-watch.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,YAAY,EAAE,MAAM,qBAAqB,CAAC;AACnD,OAAO,EAAE,YAAY,EAA4B,MAAM,qBAAqB,CAAC;AAS7E,MAAM,CAAC,KAAK,UAAU,eAAe,CACnC,MAAoB,EACpB,EAAgB,EAChB,OAA2B;IAE3B,MAAM,OAAO,GAAG,IAAI,YAAY,CAAC,EAAE,CAAC,CAAC;IAErC,MAAM,QAAQ,GAAG,CAAC,OAAO,EAAE,QAAQ,IAAI,CAAC,KAAK,CAAC,CAA+B,CAAC;IAE9E,MAAM,cAAc,GAAwB;QAC1C,SAAS,EAAE,MAAM,CAAC,SAAS;QAC3B,cAAc,EAAE;YACd,QAAQ;YACR,UAAU,EAAE,OAAO,EAAE,UAAU;YAC/B,QAAQ,EAAE,OAAO,EAAE,QAAQ;SAC5B;KACF,CAAC;IAEF,MAAM,OAAO,GAAG,IAAI,YAAY,CAAC,OAAO,EAAE,cAAc,CAAC,CAAC;IAC1D,MAAM,OAAO,CAAC,KAAK,EAAE,CAAC;IACtB,OAAO,OAAO,CAAC;AACjB,CAAC"}

package/dist/commands/graph/watch.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"watch.d.ts","sourceRoot":"","sources":["../../../src/commands/graph/watch.tsx"],"names":[],"mappings":"AAAA,OAAO,KAA8B,MAAM,OAAO,CAAC;AAEnD,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAMxB,eAAO,MAAM,WAAW,uCAAuC,CAAC;AAEhE,eAAO,MAAM,IAAI,sBAAc,CAAC;AAEhC,eAAO,MAAM,OAAO;;;;;iBAQlB,CAAC;AAEH,UAAU,KAAK;IACb,IAAI,EAAE,CAAC,CAAC,KAAK,CAAC,OAAO,IAAI,CAAC,CAAC;IAC3B,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,OAAO,OAAO,CAAC,CAAC;CAClC;AAED,MAAM,CAAC,OAAO,UAAU,iBAAiB,CAAC,EAAE,OAAO,EAAE,EAAE,KAAK,GAAG,KAAK,CAAC,SAAS,CA0E7E"}

package/dist/commands/graph/watch.js

@@ -1,5 +1,5 @@
 import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
-import { useEffect } from 'react';
+import { useEffect, useState } from 'react';
 import { Text } from 'ink';
 import { z } from 'zod';
 import { loadConfig } from '../../config.js';
@@ -22,18 +22,47 @@ export default function GraphWatchCommand({ options }) {
         ? resolveProjectConfigPath(options.project)
         : resolveConfigPath(options.config);
     const config = loadConfig(configPath);
+    const [error, setError] = useState(null);
     useEffect(() => {
         const db = openGraphDb(config);
         const channels = options.channels?.split(',').map((c) => c.trim()) ?? ['log'];
-        const watcher = startGraphWatch(config, db, {
-            channels,
-            webhookUrl: options['webhook-url'],
-        });
+        let watcherRef = null;
+        let cancelled = false;
+        const startWatcherAsync = async () => {
+            try {
+                const w = await startGraphWatch(config, db, {
+                    channels,
+                    webhookUrl: options['webhook-url'],
+                });
+                if (cancelled) {
+                    // Cleanup ran before watcher started - stop immediately
+                    await w.stop();
+                    db.close();
+                }
+                else {
+                    watcherRef = w;
+                }
+            }
+            catch (err) {
+                const message = err instanceof Error ? err.message : String(err);
+                console.error('Failed to start graph watcher:', err);
+                if (!cancelled) {
+                    setError(message);
+                }
+            }
+        };
+        void startWatcherAsync();
         const cleanup = () => {
-            void watcher
-                .stop()
-                .then(() => db.close())
-                .catch(() => db.close());
+            cancelled = true;
+            if (watcherRef) {
+                void watcherRef
+                    .stop()
+                    .then(() => db.close())
+                    .catch(() => db.close());
+            }
+            else {
+                db.close();
+            }
         };
         process.on('SIGINT', cleanup);
         process.on('SIGTERM', cleanup);
@@ -43,6 +72,9 @@ export default function GraphWatchCommand({ options }) {
             process.removeListener('SIGTERM', cleanup);
         };
     }, [config, options.channels, options['webhook-url']]);
+    if (error) {
+        return (_jsxs(Text, { children: [_jsx(Text, { color: "red", children: "Error:" }), " Failed to start watcher: ", error] }));
+    }
     return (_jsxs(Text, { children: [_jsx(Text, { color: "cyan", children: "Watching" }), " ", config.plansPath, " for changes...", '\n', "Press Ctrl+C to stop."] }));
 }
 //# sourceMappingURL=watch.js.map

package/dist/commands/graph/watch.js.map

@@ -1 +1 @@
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+{"version":3,"file":"watch.js","sourceRoot":"","sources":["../../../src/commands/graph/watch.tsx"],"names":[],"mappings":";AAAA,OAAc,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAC;AACnD,OAAO,EAAE,IAAI,EAAE,MAAM,KAAK,CAAC;AAC3B,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AACxB,OAAO,EAAE,UAAU,EAAE,MAAM,iBAAiB,CAAC;AAC7C,OAAO,EAAE,iBAAiB,EAAE,wBAAwB,EAAE,MAAM,gCAAgC,CAAC;AAC7F,OAAO,EAAE,WAAW,EAAE,MAAM,uBAAuB,CAAC;AACpD,OAAO,EAAE,eAAe,EAAE,MAAM,0BAA0B,CAAC;AAE3D,MAAM,CAAC,MAAM,WAAW,GAAG,oCAAoC,CAAC;AAEhE,MAAM,CAAC,MAAM,IAAI,GAAG,CAAC,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;AAEhC,MAAM,CAAC,MAAM,OAAO,GAAG,CAAC,CAAC,MAAM,CAAC;IAC9B,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,qBAAqB,CAAC;IAC7D,OAAO,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,yBAAyB,CAAC;IAClE,QAAQ,EAAE,CAAC;SACR,MAAM,EAAE;SACR,QAAQ,EAAE;SACV,QAAQ,CAAC,2DAA2D,CAAC;IACxE,aAAa,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,+BAA+B,CAAC;CAC/E,CAAC,CAAC;AAOH,MAAM,CAAC,OAAO,UAAU,iBAAiB,CAAC,EAAE,OAAO,EAAS;IAC1D,MAAM,UAAU,GAAG,OAAO,CAAC,OAAO;QAChC,CAAC,CAAC,wBAAwB,CAAC,OAAO,CAAC,OAAO,CAAC;QAC3C,CAAC,CAAC,iBAAiB,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC;IACtC,MAAM,MAAM,GAAG,UAAU,CAAC,UAAU,CAAC,CAAC;IACtC,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,CAAgB,IAAI,CAAC,CAAC;IAExD,SAAS,CAAC,GAAG,EAAE;QACb,MAAM,EAAE,GAAG,WAAW,CAAC,MAAM,CAAC,CAAC;QAC/B,MAAM,QAAQ,GAAG,OAAO,CAAC,QAAQ,EAAE,KAAK,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;QAE9E,IAAI,UAAU,GAAuD,IAAI,CAAC;QAC1E,IAAI,SAAS,GAAG,KAAK,CAAC;QAEtB,MAAM,iBAAiB,GAAG,KAAK,IAAmB,EAAE;YAClD,IAAI,CAAC;gBACH,MAAM,CAAC,GAAG,MAAM,eAAe,CAAC,MAAM,EAAE,EAAE,EAAE;oBAC1C,QAAQ;oBACR,UAAU,EAAE,OAAO,CAAC,aAAa,CAAC;iBACnC,CAAC,CAAC;gBACH,IAAI,SAAS,EAAE,CAAC;oBACd,wDAAwD;oBACxD,MAAM,CAAC,CAAC,IAAI,EAAE,CAAC;oBACf,EAAE,CAAC,KAAK,EAAE,CAAC;gBACb,CAAC;qBAAM,CAAC;oBACN,UAAU,GAAG,CAAC,CAAC;gBACjB,CAAC;YACH,CAAC;YAAC,OAAO,GAAY,EAAE,CAAC;gBACtB,MAAM,OAAO,GAAG,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;gBACjE,OAAO,CAAC,KAAK,CAAC,gCAAgC,EAAE,GAAG,CAAC,CAAC;gBACrD,IAAI,CAAC,SAAS,EAAE,CAAC;oBACf,QAAQ,CAAC,OAAO,CAAC,CAAC;gBACpB,CAAC;YACH,CAAC;QACH,CAAC,CAAC;QAEF,KAAK,iBAAiB,EAAE,CAAC;QAEzB,MAAM,OAAO,GAAG,GAAS,EAAE;YACzB,SAAS,GAAG,IAAI,CAAC;YACjB,IAAI,UAAU,EAAE,CAAC;gBACf,KAAK,UAAU;qBACZ,IAAI,EAAE;qBACN,IAAI,CAAC,GAAG,EAAE,CAAC,EAAE,CAAC,KAAK,EAAE,CAAC;qBACtB,KAAK,CAAC,GAAG,EAAE,CAAC,EAAE,CAAC,KAAK,EAAE,CAAC,CAAC;YAC7B,CAAC;iBAAM,CAAC;gBACN,EAAE,CAAC,KAAK,EAAE,CAAC;YACb,CAAC;QACH,CAAC,CAAC;QAEF,OAAO,CAAC,EAAE,CAAC,QAAQ,EAAE,OAAO,CAAC,CAAC;QAC9B,OAAO,CAAC,EAAE,CAAC,SAAS,EAAE,OAAO,CAAC,CAAC;QAE/B,OAAO,GAAS,EAAE;YAChB,OAAO,EAAE,CAAC;YACV,OAAO,CAAC,cAAc,CAAC,QAAQ,EAAE,OAAO,CAAC,CAAC;YAC1C,OAAO,CAAC,cAAc,CAAC,SAAS,EAAE,OAAO,CAAC,CAAC;QAC7C,CAAC,CAAC;IACJ,CAAC,EAAE,CAAC,MAAM,EAAE,OAAO,CAAC,QAAQ,EAAE,OAAO,CAAC,aAAa,CAAC,CAAC,CAAC,CAAC;IAEvD,IAAI,KAAK,EAAE,CAAC;QACV,OAAO,CACL,MAAC,IAAI,eACH,KAAC,IAAI,IAAC,KAAK,EAAC,KAAK,uBAAc,gCAA2B,KAAK,IAC1D,CACR,CAAC;IACJ,CAAC;IAED,OAAO,CACL,MAAC,IAAI,eACH,KAAC,IAAI,IAAC,KAAK,EAAC,MAAM,yBAAgB,OAAE,MAAM,CAAC,SAAS,qBACnD,IAAI,6BACA,CACR,CAAC;AACJ,CAAC"}

package/dist/config.d.ts

@@ -77,6 +77,8 @@ export interface ServerConfig {
     docsPaths?: string[];
     fileExtensions?: string[];
     dataPath: string;
+    maxFileSize?: number;
+    maxDepth?: number;
     scoring: {
         preset?: ScoringPreset;
         weights: Partial<ScoringWeights>;
@@ -93,6 +95,15 @@ export interface ServerConfig {
  */
 export declare const CURRENT_CONFIG_VERSION = 1;
 export type ConfigMigrationStep = (config: Record<string, unknown>) => void;
+/**
+ * Default maximum file size in bytes (1 MB).
+ * Files larger than this are skipped during indexing and rejected on write.
+ */
+export declare const DEFAULT_MAX_FILE_SIZE = 1048576;
+/**
+ * Default maximum directory recursion depth for indexing and watching.
+ */
+export declare const DEFAULT_MAX_DEPTH = 10;
 /**
  * Default scoring weights for task prioritization (initial config values).
  */
@@ -181,4 +192,14 @@ export declare function getAllDocsPaths(config: ServerConfig): string[];
  * @returns Array of file extensions (e.g., ['.md', '.jsx', '.tsx'])
  */
 export declare function getFileExtensions(config: ServerConfig): string[];
+/**
+ * Get maximum file size from config.
+ * Returns configured value or default (1 MB).
+ */
+export declare function getMaxFileSize(config: ServerConfig): number;
+/**
+ * Get maximum directory recursion depth from config.
+ * Returns configured value or default (10).
+ */
+export declare function getMaxDepth(config: ServerConfig): number;
 //# sourceMappingURL=config.d.ts.map

package/dist/config.d.ts.map

@@ -1 +1 @@
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package/dist/config.js

@@ -34,6 +34,15 @@ const CONFIG_MIGRATIONS = [
  * Default file extensions to index.
  */
 const DEFAULT_FILE_EXTENSIONS = ['.md'];
+/**
+ * Default maximum file size in bytes (1 MB).
+ * Files larger than this are skipped during indexing and rejected on write.
+ */
+export const DEFAULT_MAX_FILE_SIZE = 1_048_576;
+/**
+ * Default maximum directory recursion depth for indexing and watching.
+ */
+export const DEFAULT_MAX_DEPTH = 10;
 /**
  * Default scoring weights for task prioritization (initial config values).
  */
@@ -328,6 +337,18 @@ export function validateConfig(config) {
             return false;
         }
     }
+    // Check optional maxFileSize (must be positive number if present)
+    if (c.maxFileSize !== undefined) {
+        if (typeof c.maxFileSize !== 'number' || c.maxFileSize <= 0) {
+            return false;
+        }
+    }
+    // Check optional maxDepth (must be positive integer if present)
+    if (c.maxDepth !== undefined) {
+        if (typeof c.maxDepth !== 'number' || c.maxDepth < 1 || !Number.isInteger(c.maxDepth)) {
+            return false;
+        }
+    }
     if (c.tools !== undefined) {
         if (typeof c.tools !== 'object' || c.tools === null) {
             return false;
@@ -507,4 +528,18 @@ export function getAllDocsPaths(config) {
 export function getFileExtensions(config) {
     return config.fileExtensions || DEFAULT_FILE_EXTENSIONS;
 }
+/**
+ * Get maximum file size from config.
+ * Returns configured value or default (1 MB).
+ */
+export function getMaxFileSize(config) {
+    return config.maxFileSize ?? DEFAULT_MAX_FILE_SIZE;
+}
+/**
+ * Get maximum directory recursion depth from config.
+ * Returns configured value or default (10).
+ */
+export function getMaxDepth(config) {
+    return config.maxDepth ?? DEFAULT_MAX_DEPTH;
+}
 //# sourceMappingURL=config.js.map

package/dist/config.js.map

@@ -1 +1 @@
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package/dist/graph/watcher.d.ts

@@ -14,7 +14,7 @@ export declare class GraphWatcher {
     private readonly detector;
     private readonly notifier;
     constructor(storage: GraphStorage, options: GraphWatcherOptions);
-    start(): void;
+    start(): Promise<void>;
     stop(): Promise<void>;
     private handleChange;
     private handleSettled;

package/dist/graph/watcher.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"watcher.d.ts","sourceRoot":"","sources":["../../src/graph/watcher.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,cAAc,CAAC;AAGjD,OAAO,EAAoB,KAAK,uBAAuB,EAAE,MAAM,wBAAwB,CAAC;AACxF,OAAO,EAAY,KAAK,cAAc,EAAE,MAAM,eAAe,CAAC;AAE9D,MAAM,WAAW,mBAAmB;IAClC,SAAS,EAAE,MAAM,CAAC;IAClB,eAAe,CAAC,EAAE,uBAAuB,CAAC;IAC1C,cAAc,CAAC,EAAE,cAAc,CAAC;CACjC;AAED,qBAAa,YAAY;IAOrB,OAAO,CAAC,QAAQ,CAAC,OAAO;IACxB,OAAO,CAAC,QAAQ,CAAC,OAAO;IAP1B,OAAO,CAAC,OAAO,CAA0B;IACzC,OAAO,CAAC,QAAQ,CAAC,SAAS,CAAyB;IACnD,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAA0B;IACnD,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAAkB;gBAGxB,OAAO,EAAE,YAAY,EACrB,OAAO,EAAE,mBAAmB;IAS/C,KAAK,IAAI,IAAI;IAkBP,IAAI,IAAI,OAAO,CAAC,IAAI,CAAC;YAOb,YAAY;YA4BZ,aAAa;IAY3B,OAAO,CAAC,YAAY;CAgBrB"}
+{"version":3,"file":"watcher.d.ts","sourceRoot":"","sources":["../../src/graph/watcher.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,cAAc,CAAC;AAGjD,OAAO,EAAoB,KAAK,uBAAuB,EAAE,MAAM,wBAAwB,CAAC;AACxF,OAAO,EAAY,KAAK,cAAc,EAAE,MAAM,eAAe,CAAC;AAE9D,MAAM,WAAW,mBAAmB;IAClC,SAAS,EAAE,MAAM,CAAC;IAClB,eAAe,CAAC,EAAE,uBAAuB,CAAC;IAC1C,cAAc,CAAC,EAAE,cAAc,CAAC;CACjC;AAED,qBAAa,YAAY;IAOrB,OAAO,CAAC,QAAQ,CAAC,OAAO;IACxB,OAAO,CAAC,QAAQ,CAAC,OAAO;IAP1B,OAAO,CAAC,OAAO,CAA6B;IAC5C,OAAO,CAAC,QAAQ,CAAC,SAAS,CAAyB;IACnD,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAA0B;IACnD,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAAkB;gBAGxB,OAAO,EAAE,YAAY,EACrB,OAAO,EAAE,mBAAmB;IASzC,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC;IAkBtB,IAAI,IAAI,OAAO,CAAC,IAAI,CAAC;YAOb,YAAY;YA4BZ,aAAa;IAY3B,OAAO,CAAC,YAAY;CAgBrB"}

package/dist/graph/watcher.js

@@ -21,12 +21,12 @@ export class GraphWatcher {
                 : null;
         this.notifier = options.notifierConfig ? new Notifier(options.notifierConfig) : null;
     }
-    start() {
+    async start() {
         if (this.watcher)
             return;
-        this.watcher = startWatcher(this.options.plansPath, async (path, event) => {
+        this.watcher = await startWatcher(this.options.plansPath, async (path, event) => {
             await this.handleChange(path, event);
-        }, ['.md'], ['.git', 'node_modules', '.tmp', '.obsidian'], 200, 1500, async (changes) => {
+        }, ['.md'], ['.git', 'node_modules', '.tmp', '.obsidian', 'dist', 'build', '.cache'], 200, 1500, async (changes) => {
             await this.handleSettled(changes);
         });
     }

package/dist/graph/watcher.js.map

@@ -1 +1 @@
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+{"version":3,"file":"watcher.js","sourceRoot":"","sources":["../../src/graph/watcher.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,OAAO,EAAE,QAAQ,EAAE,MAAM,MAAM,CAAC;AACzC,OAAO,EAAE,YAAY,EAAE,MAAM,IAAI,CAAC;AAClC,OAAO,EAAE,YAAY,EAAE,WAAW,EAAsB,MAAM,eAAe,CAAC;AAE9E,OAAO,EAAE,kBAAkB,EAAE,UAAU,EAAE,MAAM,cAAc,CAAC;AAC9D,OAAO,EAAE,eAAe,EAAE,MAAM,gBAAgB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAgC,MAAM,wBAAwB,CAAC;AACxF,OAAO,EAAE,QAAQ,EAAuB,MAAM,eAAe,CAAC;AAQ9D,MAAM,OAAO,YAAY;IAOJ;IACA;IAPX,OAAO,GAAwB,IAAI,CAAC;IAC3B,SAAS,GAAG,IAAI,eAAe,EAAE,CAAC;IAClC,QAAQ,CAA0B;IAClC,QAAQ,CAAkB;IAE3C,YACmB,OAAqB,EACrB,OAA4B;QAD5B,YAAO,GAAP,OAAO,CAAc;QACrB,YAAO,GAAP,OAAO,CAAqB;QAE7C,IAAI,CAAC,QAAQ;YACX,OAAO,CAAC,eAAe,KAAK,SAAS,IAAI,OAAO,CAAC,cAAc,KAAK,SAAS;gBAC3E,CAAC,CAAC,IAAI,gBAAgB,CAAC,OAAO,EAAE,OAAO,CAAC,eAAe,CAAC;gBACxD,CAAC,CAAC,IAAI,CAAC;QACX,IAAI,CAAC,QAAQ,GAAG,OAAO,CAAC,cAAc,CAAC,CAAC,CAAC,IAAI,QAAQ,CAAC,OAAO,CAAC,cAAc,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;IACvF,CAAC;IAED,KAAK,CAAC,KAAK;QACT,IAAI,IAAI,CAAC,OAAO;YAAE,OAAO;QAEzB,IAAI,CAAC,OAAO,GAAG,MAAM,YAAY,CAC/B,IAAI,CAAC,OAAO,CAAC,SAAS,EACtB,KAAK,EAAE,IAAI,EAAE,KAAK,EAAE,EAAE;YACpB,MAAM,IAAI,CAAC,YAAY,CAAC,IAAI,EAAE,KAAK,CAAC,CAAC;QACvC,CAAC,EACD,CAAC,KAAK,CAAC,EACP,CAAC,MAAM,EAAE,cAAc,EAAE,MAAM,EAAE,WAAW,EAAE,MAAM,EAAE,OAAO,EAAE,QAAQ,CAAC,EACxE,GAAG,EACH,IAAI,EACJ,KAAK,EAAE,OAAO,EAAE,EAAE;YAChB,MAAM,IAAI,CAAC,aAAa,CAAC,OAAO,CAAC,CAAC;QACpC,CAAC,CACF,CAAC;IACJ,CAAC;IAED,KAAK,CAAC,IAAI;QACR,IAAI,IAAI,CAAC,OAAO,EAAE,CAAC;YACjB,MAAM,WAAW,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;YAChC,IAAI,CAAC,OAAO,GAAG,IAAI,CAAC;QACtB,CAAC;IACH,CAAC;IAEO,KAAK,CAAC,YAAY,CAAC,IAAY,EAAE,KAAkC;QACzE,IAAI,KAAK,KAAK,QAAQ,EAAE,CAAC;YACvB,IAAI,CAAC,OAAO,CAAC,sBAAsB,CAAC,IAAI,CAAC,CAAC;YAC1C,OAAO;QACT,CAAC;QAED,MAAM,OAAO,GAAG,IAAI,CAAC,YAAY,CAAC,IAAI,CAAC,CAAC;QACxC,IAAI,CAAC,OAAO;YAAE,OAAO;QAErB,IAAI,CAAC;YACH,MAAM,OAAO,GAAG,YAAY,CAAC,IAAI,EAAE,OAAO,CAAC,CAAC;YAC5C,MAAM,IAAI,GAAG,kBAAkB,CAAC,OAAO,CAAC,CAAC;YAEzC,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,OAAO,EAAE,IAAI,EAAE,IAAI,CAAC;gBAAE,OAAO;YAElD,MAAM,MAAM,GAAG,IAAI,CAAC,SAAS,CAAC,WAAW,CAAC,OAAO,CAAC,CAAC;YACnD,IAAI,MAAM,CAAC,QAAQ,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;gBAC/B,IAAI,CAAC,OAAO,CAAC,kBAAkB,CAAC,MAAM,CAAC,QAAQ,CAAC,CAAC;YACnD,CAAC;YACD,IAAI,MAAM,CAAC,aAAa,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;gBACpC,IAAI,CAAC,OAAO,CAAC,uBAAuB,CAAC,MAAM,CAAC,aAAa,CAAC,CAAC;YAC7D,CAAC;QACH,CAAC;QAAC,OAAO,KAAK,EAAE,CAAC;YACf,MAAM,GAAG,GAAG,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;YACnE,OAAO,CAAC,KAAK,CAAC,kCAAkC,IAAI,KAAK,GAAG,EAAE,CAAC,CAAC;QAClE,CAAC;IACH,CAAC;IAEO,KAAK,CAAC,aAAa,CAAC,QAAyB;QACnD,IAAI,CAAC,IAAI,CAAC,QAAQ,IAAI,CAAC,IAAI,CAAC,QAAQ;YAAE,OAAO;QAE7C,IAAI,CAAC;YACH,MAAM,SAAS,GAAG,IAAI,CAAC,QAAQ,CAAC,SAAS,EAAE,CAAC;YAC5C,MAAM,IAAI,CAAC,QAAQ,CAAC,MAAM,CAAC,SAAS,CAAC,CAAC;QACxC,CAAC;QAAC,OAAO,KAAK,EAAE,CAAC;YACf,MAAM,GAAG,GAAG,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;YACnE,OAAO,CAAC,KAAK,CAAC,8CAA8C,GAAG,EAAE,CAAC,CAAC;QACrE,CAAC;IACH,CAAC;IAEO,YAAY,CAAC,QAAgB;QACnC,iEAAiE;QACjE,IAAI,GAAG,GAAG,OAAO,CAAC,QAAQ,CAAC,CAAC;QAC5B,MAAM,SAAS,GAAG,IAAI,CAAC,OAAO,CAAC,SAAS,CAAC;QAEzC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC;YAC3B,MAAM,UAAU,GAAG,QAAQ,CAAC,GAAG,CAAC,CAAC;YACjC,IAAI,QAAQ,CAAC,IAAI,CAAC,UAAU,CAAC,EAAE,CAAC;gBAC9B,OAAO,GAAG,CAAC;YACb,CAAC;YACD,MAAM,MAAM,GAAG,OAAO,CAAC,GAAG,CAAC,CAAC;YAC5B,IAAI,MAAM,KAAK,GAAG,IAAI,MAAM,KAAK,SAAS;gBAAE,MAAM;YAClD,GAAG,GAAG,MAAM,CAAC;QACf,CAAC;QACD,OAAO,IAAI,CAAC;IACd,CAAC;CACF"}

package/dist/indexer.d.ts

@@ -52,7 +52,7 @@ export declare function clearIndex(db: DatabaseType): void;
  * @param filePath - Path to the markdown file
  * @returns Document metadata
  */
-export declare function indexDocument(db: DatabaseType, filePath: string): Promise<DocumentMetadata>;
+export declare function indexDocument(db: DatabaseType, filePath: string, maxFileSize?: number): Promise<DocumentMetadata>;
 /**
  * Update document index in database and FTS5.
  *
@@ -67,6 +67,13 @@ export declare function updateDocumentIndex(db: DatabaseType, metadata: Document
  * @param filePath - Path to the document
  */
 export declare function removeDocument(db: DatabaseType, filePath: string): Promise<void>;
+/**
+ * Remove indexed documents for a path and all nested descendants.
+ *
+ * @param db - Database instance
+ * @param pathPrefix - Absolute path to file/directory root
+ */
+export declare function removeDocumentsByPathPrefix(db: DatabaseType, pathPrefix: string): Promise<void>;
 /**
  * Index all documents in a directory.
  *
@@ -83,7 +90,9 @@ export declare function indexAllDocuments(db: DatabaseType, plansPath: string, i
  * @param paths - Array of paths to index
  * @param extensions - File extensions to index (e.g., ['.md', '.jsx', '.tsx'])
  * @param ignorePatterns - Patterns to ignore (e.g., ['node_modules', '.git'])
+ * @param maxDepth - Maximum directory recursion depth
+ * @param maxFileSize - Maximum file size in bytes to index
  * @returns Combined indexing result
  */
-export declare function indexAllPaths(db: DatabaseType, paths: string[], extensions?: string[], ignorePatterns?: string[]): Promise<IndexingResult>;
+export declare function indexAllPaths(db: DatabaseType, paths: string[], extensions?: string[], ignorePatterns?: string[], maxDepth?: number, maxFileSize?: number): Promise<IndexingResult>;
 //# sourceMappingURL=indexer.d.ts.map

package/dist/indexer.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"indexer.d.ts","sourceRoot":"","sources":["../src/indexer.ts"],"names":[],"mappings":"AAAA,OAAiB,EAAE,KAAK,QAAQ,IAAI,YAAY,EAAE,MAAM,gBAAgB,CAAC;AASzE;;GAEG;AACH,MAAM,WAAW,gBAAgB;IAC/B,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,MAAM,CAAC;IACd,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,MAAM,CAAC,EAAE,KAAK,GAAG,KAAK,GAAG,MAAM,GAAG,SAAS,GAAG,SAAS,CAAC;IACxD,YAAY,CAAC,EAAE,MAAM,EAAE,CAAC;IACxB,UAAU,EAAE,MAAM,CAAC;IACnB,IAAI,EAAE,MAAM,CAAC;CACd;AAED;;GAEG;AACH,MAAM,WAAW,cAAc;IAC7B,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,EAAE,MAAM,CAAC;IAChB,MAAM,EAAE;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,KAAK,EAAE,MAAM,CAAA;KAAE,EAAE,CAAC;CAC3C;AAED;;;;;;GAMG;AACH,wBAAgB,kBAAkB,CAAC,MAAM,EAAE,MAAM,GAAG,YAAY,CAG/D;AAED;;;;;GAKG;AACH,wBAAgB,YAAY,CAAC,EAAE,EAAE,YAAY,GAAG,IAAI,CAqBnD;AAED;;;;GAIG;AACH,wBAAgB,UAAU,CAAC,EAAE,EAAE,YAAY,GAAG,IAAI,CAKjD;AA4ID;;;;;;GAMG;AACH,wBAAsB,aAAa,CACjC,EAAE,EAAE,YAAY,EAChB,QAAQ,EAAE,MAAM,EAChB,WAAW,GAAE,MAA8B,GAC1C,OAAO,CAAC,gBAAgB,CAAC,CA+D3B;AAED;;;;;GAKG;AACH,wBAAsB,mBAAmB,CACvC,EAAE,EAAE,YAAY,EAChB,QAAQ,EAAE,gBAAgB,GACzB,OAAO,CAAC,IAAI,CAAC,CAkCf;AAED;;;;;GAKG;AACH,wBAAsB,cAAc,CAAC,EAAE,EAAE,YAAY,EAAE,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAUtF;AAED;;;;;GAKG;AACH,wBAAsB,2BAA2B,CAC/C,EAAE,EAAE,YAAY,EAChB,UAAU,EAAE,MAAM,GACjB,OAAO,CAAC,IAAI,CAAC,CAef;AAkFD;;;;;;;GAOG;AACH,wBAAsB,iBAAiB,CACrC,EAAE,EAAE,YAAY,EAChB,SAAS,EAAE,MAAM,EACjB,cAAc,GAAE,MAAM,EAAkD,GACvE,OAAO,CAAC,cAAc,CAAC,CAiEzB;AAED;;;;;;;;;;GAUG;AACH,wBAAsB,aAAa,CACjC,EAAE,EAAE,YAAY,EAChB,KAAK,EAAE,MAAM,EAAE,EACf,UAAU,GAAE,MAAM,EAAY,EAC9B,cAAc,GAAE,MAAM,EAAkD,EACxE,QAAQ,GAAE,MAA0B,EACpC,WAAW,GAAE,MAA8B,GAC1C,OAAO,CAAC,cAAc,CAAC,CA0FzB"}

package/dist/indexer.js

@@ -4,6 +4,8 @@ import { join, relative } from 'path';
 import { createHash } from 'crypto';
 import { FrontmatterHandler } from './utils/frontmatter.js';
 import { PathFilter } from './utils/pathfilter.js';
+import { checkPathSafety, isSymlink } from './utils/fs-safety.js';
+import { DEFAULT_MAX_DEPTH, DEFAULT_MAX_FILE_SIZE } from './config.js';
 /**
  * Initialize a SQLite database at the given path.
  * Creates the database file if it doesn't exist.
@@ -174,10 +176,15 @@ function calculateHash(content) {
  * @param filePath - Path to the markdown file
  * @returns Document metadata
  */
-export async function indexDocument(db, filePath) {
+export async function indexDocument(db, filePath, maxFileSize = DEFAULT_MAX_FILE_SIZE) {
     if (!existsSync(filePath)) {
         throw new Error(`File not found: ${filePath}`);
     }
+    // Safety check: reject symlinks and oversized files before reading content
+    const safety = checkPathSafety(filePath, { maxFileSize });
+    if (!safety.safe) {
+        throw new Error(`Skipping unsafe file ${filePath}: ${safety.reason}`);
+    }
     const content = readFileSync(filePath, 'utf-8');
     const stats = statSync(filePath);
     const modifiedAt = stats.mtimeMs;
@@ -262,17 +269,37 @@ export async function removeDocument(db, filePath) {
     });
     transaction();
 }
+/**
+ * Remove indexed documents for a path and all nested descendants.
+ *
+ * @param db - Database instance
+ * @param pathPrefix - Absolute path to file/directory root
+ */
+export async function removeDocumentsByPathPrefix(db, pathPrefix) {
+    const escapedPrefix = pathPrefix.replace(/\\/g, '\\\\').replace(/%/g, '\\%').replace(/_/g, '\\_');
+    const nestedLikePattern = `${escapedPrefix}/%`;
+    const transaction = db.transaction(() => {
+        db.prepare("DELETE FROM documents WHERE path = ? OR path LIKE ? ESCAPE '\\'").run(pathPrefix, nestedLikePattern);
+        db.prepare("DELETE FROM documents_fts WHERE path = ? OR path LIKE ? ESCAPE '\\'").run(pathPrefix, nestedLikePattern);
+    });
+    transaction();
+}
 /**
  * Recursively find all files with specified extensions in a directory.
- * Uses PathFilter for consistent filtering.
+ * Uses PathFilter for consistent filtering. Rejects symlinks and enforces depth limits.
  *
  * @param dir - Directory to search
  * @param extensions - File extensions to match (e.g., ['.md', '.jsx', '.tsx'])
  * @param ignorePatterns - Patterns to ignore (legacy support, PathFilter handles this)
  * @param baseDir - Base directory for relative path calculation (internal use)
+ * @param maxDepth - Maximum recursion depth (default: DEFAULT_MAX_DEPTH)
+ * @param currentDepth - Current recursion depth (internal use)
  * @returns Array of file paths
  */
-function findFiles(dir, extensions = ['.md'], ignorePatterns = [], baseDir) {
+function findFiles(dir, extensions = ['.md'], ignorePatterns = [], baseDir, maxDepth = DEFAULT_MAX_DEPTH, currentDepth = 0) {
+    if (currentDepth > maxDepth) {
+        return [];
+    }
     const files = [];
     const entries = readdirSync(dir, { withFileTypes: true });
     const searchBase = baseDir || dir;
@@ -289,6 +316,10 @@ function findFiles(dir, extensions = ['.md'], ignorePatterns = [], baseDir) {
     });
     for (const entry of entries) {
         const fullPath = join(dir, entry.name);
+        // Skip symlinks unconditionally — prevents data leaks from outside the plans tree
+        if (isSymlink(fullPath)) {
+            continue;
+        }
         // Get relative path from the search root for PathFilter
         const relativePath = relative(searchBase, fullPath).replace(/\\/g, '/');
         // Use PathFilter to check if path is allowed
@@ -296,7 +327,7 @@ function findFiles(dir, extensions = ['.md'], ignorePatterns = [], baseDir) {
             continue;
         }
         if (entry.isDirectory()) {
-            files.push(...findFiles(fullPath, extensions, ignorePatterns, searchBase));
+            files.push(...findFiles(fullPath, extensions, ignorePatterns, searchBase, maxDepth, currentDepth + 1));
         }
         else if (entry.isFile()) {
             // PathFilter already checked extension, but double-check for safety
@@ -383,9 +414,11 @@ export async function indexAllDocuments(db, plansPath, ignorePatterns = ['.git',
  * @param paths - Array of paths to index
  * @param extensions - File extensions to index (e.g., ['.md', '.jsx', '.tsx'])
  * @param ignorePatterns - Patterns to ignore (e.g., ['node_modules', '.git'])
+ * @param maxDepth - Maximum directory recursion depth
+ * @param maxFileSize - Maximum file size in bytes to index
  * @returns Combined indexing result
  */
-export async function indexAllPaths(db, paths, extensions = ['.md'], ignorePatterns = ['.git', 'node_modules', '.tmp', '.obsidian']) {
+export async function indexAllPaths(db, paths, extensions = ['.md'], ignorePatterns = ['.git', 'node_modules', '.tmp', '.obsidian'], maxDepth = DEFAULT_MAX_DEPTH, maxFileSize = DEFAULT_MAX_FILE_SIZE) {
     const result = {
         indexed: 0,
         updated: 0,
@@ -400,7 +433,7 @@ export async function indexAllPaths(db, paths, extensions = ['.md'], ignorePatte
             result.errors.push({ path, error: `Directory not found: ${path}` });
             continue;
         }
-        const files = findFiles(path, extensions, ignorePatterns);
+        const files = findFiles(path, extensions, ignorePatterns, undefined, maxDepth);
         for (const file of files) {
             // Deduplicate files (in case paths overlap)
             if (!seenFiles.has(file)) {
@@ -428,6 +461,12 @@ export async function indexAllPaths(db, paths, extensions = ['.md'], ignorePatte
                     result.errors.push({ path: filePath, error: 'File not found' });
                     return;
                 }
+                // Safety check: skip symlinks and oversized files
+                const safety = checkPathSafety(filePath, { maxFileSize });
+                if (!safety.safe) {
+                    result.skipped++;
+                    return;
+                }
                 const content = readFileSync(filePath, 'utf-8');
                 const hash = calculateHash(content);
                 const existing = db.prepare('SELECT hash FROM documents WHERE path = ?').get(filePath);
@@ -436,7 +475,7 @@ export async function indexAllPaths(db, paths, extensions = ['.md'], ignorePatte
                     return;
                 }
                 const wasExisting = existing !== undefined;
-                await indexDocument(db, filePath);
+                await indexDocument(db, filePath, maxFileSize);
                 if (wasExisting) {
                     result.updated++;
                 }