@sudocode-ai/cli 0.1.12 → 0.1.13

package/dist/cli.js

@@ -19,6 +19,7 @@ import { handleFeedbackAdd, handleFeedbackList, handleFeedbackShow, handleFeedba
 import { handleServerStart } from "./cli/server-commands.js";
 import { handleInit } from "./cli/init-commands.js";
 import { handleUpdate, handleUpdateCheck } from "./cli/update-commands.js";
+import { handlePluginList, handlePluginInstall, handlePluginStatus, handlePluginUninstall, handlePluginConfigure, handlePluginTest, handlePluginInfo, } from "./cli/plugin-commands.js";
 import { handleResolveConflicts, handleMergeDriver, handleInitMergeDriver, handleRemoveMergeDriver, } from "./cli/merge-commands.js";
 import { getUpdateNotification } from "./update-checker.js";
 import { VERSION } from "./version.js";
@@ -113,7 +114,7 @@ program
 program
     .command("init")
     .description("Initialize .sudocode directory structure")
-    .action(async (options) => {
+    .action(async () => {
     await handleInit({});
 });
 // ============================================================================
@@ -443,6 +444,77 @@ program
     .action(async (options) => {
     await handleRemoveMergeDriver(options);
 });
+// ============================================================================
+// PLUGIN COMMANDS
+// ============================================================================
+const plugin = program
+    .command("plugin")
+    .alias("plugins")
+    .description("Manage integration plugins");
+plugin
+    .command("list")
+    .description("List available integration plugins")
+    .option("-a, --all", "Show all plugins including not installed")
+    .action(async (options) => {
+    await handlePluginList(getContext(), options);
+});
+plugin
+    .command("install <name>")
+    .description("Install an integration plugin")
+    .option("-g, --global", "Install globally")
+    .action(async (name, options) => {
+    await handlePluginInstall(getContext(), name, options);
+});
+plugin
+    .command("uninstall <name>")
+    .description("Uninstall an integration plugin")
+    .option("-g, --global", "Uninstall globally")
+    .action(async (name, options) => {
+    await handlePluginUninstall(getContext(), name, options);
+});
+plugin
+    .command("status")
+    .description("Show status of installed plugins")
+    .action(async () => {
+    await handlePluginStatus(getContext());
+});
+plugin
+    .command("configure <name>")
+    .description("Configure an integration plugin")
+    .option("--set <key=value...>", "Set configuration option(s)")
+    .option("--options <json>", "Set options as JSON object")
+    .option("--enable", "Enable the integration")
+    .option("--disable", "Disable the integration")
+    .option("--auto-sync", "Enable automatic syncing")
+    .option("--no-auto-sync", "Disable automatic syncing")
+    .option("--auto-import", "Enable automatic import of new entities")
+    .option("--no-auto-import", "Disable automatic import")
+    .option("--delete-behavior <behavior>", "What to do when external entity is deleted (close|delete|ignore)")
+    .option("--test", "Run connection test after configuration")
+    .action(async (name, options) => {
+    await handlePluginConfigure(getContext(), name, {
+        set: options.set,
+        options: options.options,
+        enable: options.enable,
+        disable: options.disable,
+        autoSync: options.autoSync,
+        autoImport: options.autoImport,
+        deleteBehavior: options.deleteBehavior,
+        test: options.test,
+    });
+});
+plugin
+    .command("test <name>")
+    .description("Test a plugin's connection/setup")
+    .action(async (name) => {
+    await handlePluginTest(getContext(), name);
+});
+plugin
+    .command("info <name>")
+    .description("Show detailed information about a plugin")
+    .action(async (name) => {
+    await handlePluginInfo(getContext(), name);
+});
 // Parse arguments
 program.parse();
 // Check for updates (non-blocking)

package/dist/cli.js.map

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package/dist/config.d.ts

@@ -1,4 +1,23 @@
 import type { Config } from "@sudocode-ai/types";
+import { type ValidationResult } from "./integrations/index.js";
+/**
+ * Options for loading configuration
+ */
+export interface LoadConfigOptions {
+    /** Whether to validate integrations config (default: true) */
+    validateIntegrations?: boolean;
+    /** Whether to throw on validation errors (default: false, warnings are logged) */
+    throwOnValidationErrors?: boolean;
+}
+/**
+ * Result of loading configuration with validation info
+ */
+export interface ConfigLoadResult {
+    /** The loaded configuration */
+    config: Config;
+    /** Validation result for integrations (if present) */
+    integrationsValidation?: ValidationResult;
+}
 /**
  * Get current config
  */
@@ -7,4 +26,25 @@ export declare function getConfig(outputDir: string): Config;
  * Update config (version-controlled)
  */
 export declare function updateConfig(outputDir: string, updates: Partial<Config>): void;
+/**
+ * Load config with validation
+ *
+ * @param outputDir - The .sudocode directory path
+ * @param options - Loading options
+ * @returns Config load result with validation info
+ * @throws Error if throwOnValidationErrors is true and validation fails
+ *
+ * @example
+ * ```typescript
+ * const result = loadConfigWithValidation('/project/.sudocode', {
+ *   validateIntegrations: true,
+ *   throwOnValidationErrors: true,
+ * });
+ *
+ * if (result.integrationsValidation?.warnings.length) {
+ *   console.warn('Integration warnings:', result.integrationsValidation.warnings);
+ * }
+ * ```
+ */
+export declare function loadConfigWithValidation(outputDir: string, options?: LoadConfigOptions): ConfigLoadResult;
 //# sourceMappingURL=config.d.ts.map

package/dist/config.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"config.d.ts","sourceRoot":"","sources":["../src/config.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,oBAAoB,CAAC;AA8BjD;;GAEG;AACH,wBAAgB,SAAS,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,CAEnD;AAED;;GAEG;AACH,wBAAgB,YAAY,CAC1B,SAAS,EAAE,MAAM,EACjB,OAAO,EAAE,OAAO,CAAC,MAAM,CAAC,GACvB,IAAI,CAIN"}
+{"version":3,"file":"config.d.ts","sourceRoot":"","sources":["../src/config.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,oBAAoB,CAAC;AAEjD,OAAO,EAEL,KAAK,gBAAgB,EACtB,MAAM,yBAAyB,CAAC;AAEjC;;GAEG;AACH,MAAM,WAAW,iBAAiB;IAChC,8DAA8D;IAC9D,oBAAoB,CAAC,EAAE,OAAO,CAAC;IAC/B,kFAAkF;IAClF,uBAAuB,CAAC,EAAE,OAAO,CAAC;CACnC;AAED;;GAEG;AACH,MAAM,WAAW,gBAAgB;IAC/B,+BAA+B;IAC/B,MAAM,EAAE,MAAM,CAAC;IACf,sDAAsD;IACtD,sBAAsB,CAAC,EAAE,gBAAgB,CAAC;CAC3C;AA6BD;;GAEG;AACH,wBAAgB,SAAS,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,CAEnD;AAED;;GAEG;AACH,wBAAgB,YAAY,CAC1B,SAAS,EAAE,MAAM,EACjB,OAAO,EAAE,OAAO,CAAC,MAAM,CAAC,GACvB,IAAI,CAIN;AAED;;;;;;;;;;;;;;;;;;;GAmBG;AACH,wBAAgB,wBAAwB,CACtC,SAAS,EAAE,MAAM,EACjB,OAAO,GAAE,iBAAsB,GAC9B,gBAAgB,CAoBlB"}

package/dist/config.js

@@ -1,6 +1,7 @@
 import * as fs from "fs";
 import * as path from "path";
 import { VERSION } from "./version.js";
+import { validateIntegrationsConfig, } from "./integrations/index.js";
 /**
  * Read config file (version-controlled)
  */
@@ -38,4 +39,38 @@ export function updateConfig(outputDir, updates) {
     Object.assign(config, updates);
     writeConfig(outputDir, config);
 }
+/**
+ * Load config with validation
+ *
+ * @param outputDir - The .sudocode directory path
+ * @param options - Loading options
+ * @returns Config load result with validation info
+ * @throws Error if throwOnValidationErrors is true and validation fails
+ *
+ * @example
+ * ```typescript
+ * const result = loadConfigWithValidation('/project/.sudocode', {
+ *   validateIntegrations: true,
+ *   throwOnValidationErrors: true,
+ * });
+ *
+ * if (result.integrationsValidation?.warnings.length) {
+ *   console.warn('Integration warnings:', result.integrationsValidation.warnings);
+ * }
+ * ```
+ */
+export function loadConfigWithValidation(outputDir, options = {}) {
+    const { validateIntegrations = true, throwOnValidationErrors = false } = options;
+    const config = readConfig(outputDir);
+    const result = { config };
+    // Validate integrations if present and validation requested
+    if (validateIntegrations && config.integrations) {
+        const validation = validateIntegrationsConfig(config.integrations);
+        result.integrationsValidation = validation;
+        if (!validation.valid && throwOnValidationErrors) {
+            throw new Error(`Integration config validation failed:\n${validation.errors.join("\n")}`);
+        }
+    }
+    return result;
+}
 //# sourceMappingURL=config.js.map

package/dist/config.js.map

@@ -1 +1 @@
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+{"version":3,"file":"config.js","sourceRoot":"","sources":["../src/config.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,MAAM,IAAI,CAAC;AACzB,OAAO,KAAK,IAAI,MAAM,MAAM,CAAC;AAE7B,OAAO,EAAE,OAAO,EAAE,MAAM,cAAc,CAAC;AACvC,OAAO,EACL,0BAA0B,GAE3B,MAAM,yBAAyB,CAAC;AAsBjC;;GAEG;AACH,SAAS,UAAU,CAAC,SAAiB;IACnC,MAAM,UAAU,GAAG,IAAI,CAAC,IAAI,CAAC,SAAS,EAAE,aAAa,CAAC,CAAC;IAEvD,IAAI,CAAC,EAAE,CAAC,UAAU,CAAC,UAAU,CAAC,EAAE,CAAC;QAC/B,sCAAsC;QACtC,MAAM,aAAa,GAAW;YAC5B,OAAO,EAAE,OAAO;SACjB,CAAC;QACF,WAAW,CAAC,SAAS,EAAE,aAAa,CAAC,CAAC;QACtC,OAAO,aAAa,CAAC;IACvB,CAAC;IAED,MAAM,OAAO,GAAG,EAAE,CAAC,YAAY,CAAC,UAAU,EAAE,MAAM,CAAC,CAAC;IACpD,OAAO,IAAI,CAAC,KAAK,CAAC,OAAO,CAAW,CAAC;AACvC,CAAC;AAED;;GAEG;AACH,SAAS,WAAW,CAAC,SAAiB,EAAE,MAAc;IACpD,MAAM,UAAU,GAAG,IAAI,CAAC,IAAI,CAAC,SAAS,EAAE,aAAa,CAAC,CAAC;IACvD,EAAE,CAAC,aAAa,CAAC,UAAU,EAAE,IAAI,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,EAAE,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC;AACxE,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,SAAS,CAAC,SAAiB;IACzC,OAAO,UAAU,CAAC,SAAS,CAAC,CAAC;AAC/B,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,YAAY,CAC1B,SAAiB,EACjB,OAAwB;IAExB,MAAM,MAAM,GAAG,UAAU,CAAC,SAAS,CAAC,CAAC;IACrC,MAAM,CAAC,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IAC/B,WAAW,CAAC,SAAS,EAAE,MAAM,CAAC,CAAC;AACjC,CAAC;AAED;;;;;;;;;;;;;;;;;;;GAmBG;AACH,MAAM,UAAU,wBAAwB,CACtC,SAAiB,EACjB,UAA6B,EAAE;IAE/B,MAAM,EAAE,oBAAoB,GAAG,IAAI,EAAE,uBAAuB,GAAG,KAAK,EAAE,GACpE,OAAO,CAAC;IAEV,MAAM,MAAM,GAAG,UAAU,CAAC,SAAS,CAAC,CAAC;IACrC,MAAM,MAAM,GAAqB,EAAE,MAAM,EAAE,CAAC;IAE5C,4DAA4D;IAC5D,IAAI,oBAAoB,IAAI,MAAM,CAAC,YAAY,EAAE,CAAC;QAChD,MAAM,UAAU,GAAG,0BAA0B,CAAC,MAAM,CAAC,YAAY,CAAC,CAAC;QACnE,MAAM,CAAC,sBAAsB,GAAG,UAAU,CAAC;QAE3C,IAAI,CAAC,UAAU,CAAC,KAAK,IAAI,uBAAuB,EAAE,CAAC;YACjD,MAAM,IAAI,KAAK,CACb,0CAA0C,UAAU,CAAC,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CACzE,CAAC;QACJ,CAAC;IACH,CAAC;IAED,OAAO,MAAM,CAAC;AAChB,CAAC"}

package/dist/export.d.ts

@@ -2,7 +2,7 @@
  * Export SQLite data to JSONL files
  */
 import type Database from "better-sqlite3";
-import type { Spec, Issue, SpecJSONL, IssueJSONL } from "./types.js";
+import type { Spec, Issue, SpecJSONL, IssueJSONL, ExternalLink } from "./types.js";
 export interface ExportOptions {
     /**
      * Output directory for JSONL files
@@ -20,22 +20,27 @@ export interface ExportOptions {
 }
 /**
  * Convert a Spec to SpecJSONL format with embedded relationships and tags
+ * @param existingExternalLinks - Optional map of spec ID to external links (preserved from existing JSONL)
  */
-export declare function specToJSONL(db: Database.Database, spec: Spec): SpecJSONL;
+export declare function specToJSONL(db: Database.Database, spec: Spec, existingExternalLinks?: Map<string, ExternalLink[]>): SpecJSONL;
 /**
  * Convert an Issue to IssueJSONL format with embedded relationships and tags
+ * @param existingExternalLinks - Optional map of issue ID to external links (preserved from existing JSONL)
  */
-export declare function issueToJSONL(db: Database.Database, issue: Issue): IssueJSONL;
+export declare function issueToJSONL(db: Database.Database, issue: Issue, existingExternalLinks?: Map<string, ExternalLink[]>): IssueJSONL;
 /**
  * Export all specs to JSONL format
+ * @param existingExternalLinks - Optional map of spec ID to external links (for preserving from existing JSONL)
  */
-export declare function exportSpecsToJSONL(db: Database.Database, options?: ExportOptions): SpecJSONL[];
+export declare function exportSpecsToJSONL(db: Database.Database, options?: ExportOptions, existingExternalLinks?: Map<string, ExternalLink[]>): SpecJSONL[];
 /**
  * Export all issues to JSONL format
+ * @param existingExternalLinks - Optional map of issue ID to external links (for preserving from existing JSONL)
  */
-export declare function exportIssuesToJSONL(db: Database.Database, options?: ExportOptions): IssueJSONL[];
+export declare function exportIssuesToJSONL(db: Database.Database, options?: ExportOptions, existingExternalLinks?: Map<string, ExternalLink[]>): IssueJSONL[];
 /**
  * Export both specs and issues to JSONL files
+ * Preserves external_links from existing JSONL files
  */
 export declare function exportToJSONL(db: Database.Database, options?: ExportOptions): Promise<{
     specsCount: number;

package/dist/export.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"export.d.ts","sourceRoot":"","sources":["../src/export.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,KAAK,QAAQ,MAAM,gBAAgB,CAAC;AAC3C,OAAO,KAAK,EACV,IAAI,EACJ,KAAK,EACL,SAAS,EACT,UAAU,EAGV,YAAY,EACb,MAAM,YAAY,CAAC;AAQpB,MAAM,WAAW,aAAa;IAC5B;;OAEG;IACH,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB;;OAEG;IACH,KAAK,CAAC,EAAE,IAAI,CAAC;IACb;;OAEG;IACH,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,UAAU,CAAC,EAAE,MAAM,CAAC;CACrB;AAyCD;;;GAGG;AACH,wBAAgB,WAAW,CACzB,EAAE,EAAE,QAAQ,CAAC,QAAQ,EACrB,IAAI,EAAE,IAAI,EACV,qBAAqB,CAAC,EAAE,GAAG,CAAC,MAAM,EAAE,YAAY,EAAE,CAAC,GAClD,SAAS,CA0BX;AAED;;;GAGG;AACH,wBAAgB,YAAY,CAC1B,EAAE,EAAE,QAAQ,CAAC,QAAQ,EACrB,KAAK,EAAE,KAAK,EACZ,qBAAqB,CAAC,EAAE,GAAG,CAAC,MAAM,EAAE,YAAY,EAAE,CAAC,GAClD,UAAU,CA+CZ;AAED;;;GAGG;AACH,wBAAgB,kBAAkB,CAChC,EAAE,EAAE,QAAQ,CAAC,QAAQ,EACrB,OAAO,GAAE,aAAkB,EAC3B,qBAAqB,CAAC,EAAE,GAAG,CAAC,MAAM,EAAE,YAAY,EAAE,CAAC,GAClD,SAAS,EAAE,CAab;AAED;;;GAGG;AACH,wBAAgB,mBAAmB,CACjC,EAAE,EAAE,QAAQ,CAAC,QAAQ,EACrB,OAAO,GAAE,aAAkB,EAC3B,qBAAqB,CAAC,EAAE,GAAG,CAAC,MAAM,EAAE,YAAY,EAAE,CAAC,GAClD,UAAU,EAAE,CAad;AAmBD;;;GAGG;AACH,wBAAsB,aAAa,CACjC,EAAE,EAAE,QAAQ,CAAC,QAAQ,EACrB,OAAO,GAAE,aAAkB,GAC1B,OAAO,CAAC;IAAE,UAAU,EAAE,MAAM,CAAC;IAAC,WAAW,EAAE,MAAM,CAAA;CAAE,CAAC,CA0BtD;AAED;;GAEG;AACH,qBAAa,eAAe;IAKxB,OAAO,CAAC,EAAE;IACV,OAAO,CAAC,OAAO;IACf,OAAO,CAAC,OAAO;IANjB,OAAO,CAAC,SAAS,CAA+B;IAChD,OAAO,CAAC,OAAO,CAAkB;gBAGvB,EAAE,EAAE,QAAQ,CAAC,QAAQ,EACrB,OAAO,GAAE,MAAa,EACtB,OAAO,GAAE,aAAkB;IAGrC;;OAEG;IACH,OAAO,IAAI,IAAI;IAYf;;OAEG;IACG,OAAO,IAAI,OAAO,CAAC,IAAI,CAAC;IAgB9B;;OAEG;IACH,MAAM,IAAI,IAAI;IAQd;;OAEG;IACH,SAAS,IAAI,OAAO;IAIpB;;OAEG;IACG,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC;CAS7B;AAED;;GAEG;AACH,wBAAgB,qBAAqB,CACnC,EAAE,EAAE,QAAQ,CAAC,QAAQ,EACrB,OAAO,GAAE,MAAa,EACtB,OAAO,GAAE,aAAkB,GAC1B,eAAe,CAEjB"}

package/dist/export.js

@@ -6,11 +6,51 @@ import { listIssues } from "./operations/issues.js";
 import { getOutgoingRelationships } from "./operations/relationships.js";
 import { getTags } from "./operations/tags.js";
 import { listFeedback } from "./operations/feedback.js";
-import { writeJSONL } from "./jsonl.js";
+import { writeJSONL, readJSONLSync } from "./jsonl.js";
+/**
+ * Sort relationships for deterministic JSONL output
+ * Sorts by: to_id, then to_type, then relationship type
+ */
+function sortRelationships(rels) {
+    return [...rels].sort((a, b) => {
+        if (a.to !== b.to)
+            return a.to.localeCompare(b.to);
+        if (a.to_type !== b.to_type)
+            return a.to_type.localeCompare(b.to_type);
+        return a.type.localeCompare(b.type);
+    });
+}
+/**
+ * Sort tags alphabetically for deterministic JSONL output
+ */
+function sortTags(tags) {
+    return [...tags].sort((a, b) => a.localeCompare(b));
+}
+/**
+ * Sort feedback for deterministic JSONL output
+ * Sorts by: id (stable identifier)
+ */
+function sortFeedback(feedback) {
+    return [...feedback].sort((a, b) => a.id.localeCompare(b.id));
+}
+/**
+ * Sort external links for deterministic JSONL output
+ * Sorts by: provider, then external_id
+ */
+function sortExternalLinks(links) {
+    if (!links || links.length === 0)
+        return links;
+    return [...links].sort((a, b) => {
+        if (a.provider !== b.provider)
+            return a.provider.localeCompare(b.provider);
+        return a.external_id.localeCompare(b.external_id);
+    });
+}
 /**
  * Convert a Spec to SpecJSONL format with embedded relationships and tags
+ * @param existingExternalLinks - Optional map of spec ID to external links (preserved from existing JSONL)
  */
-export function specToJSONL(db, spec) {
+export function specToJSONL(db, spec, existingExternalLinks) {
     // Get outgoing relationships
     const relationships = getOutgoingRelationships(db, spec.id, "spec");
     // Convert to JSONL format
@@ -23,16 +63,21 @@ export function specToJSONL(db, spec) {
     }));
     // Get tags
     const tags = getTags(db, spec.id, "spec");
+    // Get external_links - prefer from spec if present, otherwise from existing JSONL
+    const externalLinks = spec.external_links ?? existingExternalLinks?.get(spec.id);
     return {
         ...spec,
-        relationships: relationshipsJSONL,
-        tags,
+        // Sort arrays for deterministic output (reduces JSONL churn)
+        relationships: sortRelationships(relationshipsJSONL),
+        tags: sortTags(tags),
+        external_links: sortExternalLinks(externalLinks),
     };
 }
 /**
  * Convert an Issue to IssueJSONL format with embedded relationships and tags
+ * @param existingExternalLinks - Optional map of issue ID to external links (preserved from existing JSONL)
  */
-export function issueToJSONL(db, issue) {
+export function issueToJSONL(db, issue, existingExternalLinks) {
     // Get outgoing relationships
     const relationships = getOutgoingRelationships(db, issue.id, "issue");
     // Convert to JSONL format
@@ -61,17 +106,23 @@ export function issueToJSONL(db, issue) {
         created_at: feedback.created_at,
         updated_at: feedback.updated_at,
     }));
+    // Get external_links - prefer from issue if present, otherwise from existing JSONL
+    const externalLinks = issue.external_links ?? existingExternalLinks?.get(issue.id);
+    // Sort arrays for deterministic output (reduces JSONL churn)
+    const sortedFeedback = sortFeedback(feedbackJSONL);
     return {
         ...issue,
-        relationships: relationshipsJSONL,
-        tags,
-        feedback: feedbackJSONL.length > 0 ? feedbackJSONL : undefined,
+        relationships: sortRelationships(relationshipsJSONL),
+        tags: sortTags(tags),
+        feedback: sortedFeedback.length > 0 ? sortedFeedback : undefined,
+        external_links: sortExternalLinks(externalLinks),
     };
 }
 /**
  * Export all specs to JSONL format
+ * @param existingExternalLinks - Optional map of spec ID to external links (for preserving from existing JSONL)
  */
-export function exportSpecsToJSONL(db, options = {}) {
+export function exportSpecsToJSONL(db, options = {}, existingExternalLinks) {
     const { since } = options;
     // Get all specs (including archived)
     const specs = listSpecs(db);
@@ -79,13 +130,14 @@ export function exportSpecsToJSONL(db, options = {}) {
     const filtered = since
         ? specs.filter((spec) => new Date(spec.updated_at) > since)
         : specs;
-    // Convert to JSONL format with relationships and tags
-    return filtered.map((spec) => specToJSONL(db, spec));
+    // Convert to JSONL format with relationships, tags, and external_links
+    return filtered.map((spec) => specToJSONL(db, spec, existingExternalLinks));
 }
 /**
  * Export all issues to JSONL format
+ * @param existingExternalLinks - Optional map of issue ID to external links (for preserving from existing JSONL)
  */
-export function exportIssuesToJSONL(db, options = {}) {
+export function exportIssuesToJSONL(db, options = {}, existingExternalLinks) {
     const { since } = options;
     // Get all issues (including archived)
     const issues = listIssues(db);
@@ -93,21 +145,39 @@ export function exportIssuesToJSONL(db, options = {}) {
     const filtered = since
         ? issues.filter((issue) => new Date(issue.updated_at) > since)
         : issues;
-    // Convert to JSONL format with relationships and tags
-    return filtered.map((issue) => issueToJSONL(db, issue));
+    // Convert to JSONL format with relationships, tags, and external_links
+    return filtered.map((issue) => issueToJSONL(db, issue, existingExternalLinks));
+}
+/**
+ * Read existing external_links from a JSONL file
+ * Returns a map of entity ID to external_links array
+ */
+function readExistingExternalLinks(filePath) {
+    const map = new Map();
+    const entities = readJSONLSync(filePath, { skipErrors: true });
+    for (const entity of entities) {
+        if (entity.external_links && entity.external_links.length > 0) {
+            map.set(entity.id, entity.external_links);
+        }
+    }
+    return map;
 }
 /**
  * Export both specs and issues to JSONL files
+ * Preserves external_links from existing JSONL files
  */
 export async function exportToJSONL(db, options = {}) {
     const { outputDir = ".sudocode", specsFile = "specs.jsonl", issuesFile = "issues.jsonl", } = options;
     const specsPath = `${outputDir}/${specsFile}`;
     const issuesPath = `${outputDir}/${issuesFile}`;
-    // Export specs
-    const specs = exportSpecsToJSONL(db, options);
+    // Read existing external_links from JSONL files (to preserve them since SQLite doesn't store them)
+    const existingSpecLinks = readExistingExternalLinks(specsPath);
+    const existingIssueLinks = readExistingExternalLinks(issuesPath);
+    // Export specs with preserved external_links
+    const specs = exportSpecsToJSONL(db, options, existingSpecLinks);
     await writeJSONL(specsPath, specs);
-    // Export issues
-    const issues = exportIssuesToJSONL(db, options);
+    // Export issues with preserved external_links
+    const issues = exportIssuesToJSONL(db, options, existingIssueLinks);
     await writeJSONL(issuesPath, issues);
     return {
         specsCount: specs.length,

package/dist/export.js.map

@@ -1 +1 @@
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package/dist/import.d.ts.map

@@ -1 +1 @@
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package/dist/import.js

@@ -278,6 +278,11 @@ export function importSpecs(db, specs, changes, dryRun = false, skipRelationship
                 archived_at: spec.archived_at,
                 created_at: spec.created_at,
                 updated_at: spec.updated_at,
+                // Pass null when JSONL doesn't have external_links, so SQLite gets cleared
+                // (undefined would skip the update, causing oscillation with export)
+                external_links: spec.external_links && spec.external_links.length > 0
+                    ? JSON.stringify(spec.external_links)
+                    : null,
             });
             // Add tags
             setTags(db, spec.id, "spec", spec.tags || []);
@@ -326,6 +331,11 @@ export function importSpecs(db, specs, changes, dryRun = false, skipRelationship
                 archived: spec.archived,
                 archived_at: spec.archived_at,
                 updated_at: spec.updated_at,
+                // Pass null when JSONL doesn't have external_links, so SQLite gets cleared
+                // (undefined would skip the update, causing oscillation with export)
+                external_links: spec.external_links && spec.external_links.length > 0
+                    ? JSON.stringify(spec.external_links)
+                    : null,
             });
             setTags(db, spec.id, "spec", spec.tags || []);
             updated++;
@@ -423,6 +433,11 @@ export function importIssues(db, issues, changes, dryRun = false, skipRelationsh
                 created_at: issue.created_at,
                 updated_at: issue.updated_at,
                 closed_at: issue.closed_at,
+                // Pass null when JSONL doesn't have external_links, so SQLite gets cleared
+                // (undefined would skip the update, causing oscillation with export)
+                external_links: issue.external_links && issue.external_links.length > 0
+                    ? JSON.stringify(issue.external_links)
+                    : null,
             });
             setTags(db, issue.id, "issue", issue.tags || []);
             added++;
@@ -470,6 +485,11 @@ export function importIssues(db, issues, changes, dryRun = false, skipRelationsh
                 archived_at: issue.archived_at,
                 updated_at: issue.updated_at,
                 closed_at: issue.closed_at,
+                // Pass null when JSONL doesn't have external_links, so SQLite gets cleared
+                // (undefined would skip the update, causing oscillation with export)
+                external_links: issue.external_links && issue.external_links.length > 0
+                    ? JSON.stringify(issue.external_links)
+                    : null,
             });
             setTags(db, issue.id, "issue", issue.tags || []);
             updated++;