@stupidloud/codegraph 0.7.7

package/dist/utils.js

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+"use strict";
+/**
+ * CodeGraph Utilities
+ *
+ * Common utility functions for memory management, concurrency, batching,
+ * and security validation.
+ *
+ * @module utils
+ *
+ * @example
+ * ```typescript
+ * import { Mutex, processInBatches, MemoryMonitor, validatePathWithinRoot } from 'codegraph';
+ *
+ * // Use mutex for concurrent safety
+ * const mutex = new Mutex();
+ * await mutex.withLock(async () => {
+ *   await performCriticalOperation();
+ * });
+ *
+ * // Process items in batches to manage memory
+ * const results = await processInBatches(items, 100, async (item) => {
+ *   return await processItem(item);
+ * });
+ *
+ * // Monitor memory usage
+ * const monitor = new MemoryMonitor(512, (usage) => {
+ *   console.warn(`Memory usage exceeded 512MB: ${usage / 1024 / 1024}MB`);
+ * });
+ * monitor.start();
+ * ```
+ */
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.MemoryMonitor = exports.Mutex = exports.FileLock = void 0;
+exports.validatePathWithinRoot = validatePathWithinRoot;
+exports.validateProjectPath = validateProjectPath;
+exports.isPathWithinRoot = isPathWithinRoot;
+exports.isPathWithinRootReal = isPathWithinRootReal;
+exports.safeJsonParse = safeJsonParse;
+exports.clamp = clamp;
+exports.normalizePath = normalizePath;
+exports.processInBatches = processInBatches;
+exports.readFileInChunks = readFileInChunks;
+exports.debounce = debounce;
+exports.throttle = throttle;
+exports.estimateSize = estimateSize;
+const fs = __importStar(require("fs"));
+const path = __importStar(require("path"));
+// ============================================================
+// SECURITY UTILITIES
+// ============================================================
+/**
+ * Sensitive system directories that should never be used as project roots.
+ * Checked on all platforms; non-applicable paths are harmlessly skipped.
+ */
+const SENSITIVE_PATHS = new Set([
+    '/', '/etc', '/usr', '/bin', '/sbin', '/var', '/tmp', '/dev', '/proc', '/sys',
+    '/root', '/boot', '/lib', '/lib64', '/opt',
+    'C:\\', 'C:\\Windows', 'C:\\Windows\\System32',
+]);
+/**
+ * Validate that a resolved file path stays within the project root.
+ * Prevents path traversal attacks (e.g. node.filePath = "../../etc/passwd").
+ *
+ * @param projectRoot - The project root directory
+ * @param filePath - The relative file path to validate
+ * @returns The resolved absolute path, or null if it escapes the root
+ */
+function validatePathWithinRoot(projectRoot, filePath) {
+    const resolved = path.resolve(projectRoot, filePath);
+    const normalizedRoot = path.resolve(projectRoot);
+    if (!resolved.startsWith(normalizedRoot + path.sep) && resolved !== normalizedRoot) {
+        return null;
+    }
+    return resolved;
+}
+/**
+ * Validate that a path is a safe project root directory.
+ *
+ * Rejects sensitive system directories and ensures the path is
+ * a real, existing directory. Used at MCP and API entry points
+ * to prevent arbitrary directory access.
+ *
+ * @param dirPath - The path to validate
+ * @returns An error message if invalid, or null if valid
+ */
+function validateProjectPath(dirPath) {
+    const resolved = path.resolve(dirPath);
+    // Block sensitive system directories
+    if (SENSITIVE_PATHS.has(resolved) || SENSITIVE_PATHS.has(resolved.toLowerCase())) {
+        return `Refusing to operate on sensitive system directory: ${resolved}`;
+    }
+    // Also block common sensitive home subdirectories
+    const homeDir = require('os').homedir();
+    const sensitiveHomeDirs = ['.ssh', '.gnupg', '.aws', '.config'];
+    for (const dir of sensitiveHomeDirs) {
+        const sensitivePath = path.join(homeDir, dir);
+        if (resolved === sensitivePath || resolved.startsWith(sensitivePath + path.sep)) {
+            return `Refusing to operate on sensitive directory: ${resolved}`;
+        }
+    }
+    // Verify it's a real directory
+    try {
+        const stats = fs.statSync(resolved);
+        if (!stats.isDirectory()) {
+            return `Path is not a directory: ${resolved}`;
+        }
+    }
+    catch {
+        return `Path does not exist or is not accessible: ${resolved}`;
+    }
+    return null;
+}
+/**
+ * Check if a file path resolves to a location within the given root directory.
+ *
+ * Prevents path traversal attacks by ensuring the resolved absolute path
+ * starts with the resolved root path. Handles '..' sequences, symlink-like
+ * relative paths, and platform-specific separators.
+ *
+ * @param filePath - The path to check (can be relative or absolute)
+ * @param rootDir - The root directory that filePath must stay within
+ * @returns true if filePath resolves to a location within rootDir
+ */
+function isPathWithinRoot(filePath, rootDir) {
+    const resolvedPath = path.resolve(rootDir, filePath);
+    const resolvedRoot = path.resolve(rootDir);
+    return resolvedPath.startsWith(resolvedRoot + path.sep) || resolvedPath === resolvedRoot;
+}
+/**
+ * Like isPathWithinRoot but also resolves symlinks via fs.realpathSync.
+ *
+ * This catches symlink escapes where the logical path appears to be within
+ * root but the real path on disk points elsewhere. Falls back to logical
+ * path checking if realpath resolution fails (e.g. broken symlink).
+ */
+function isPathWithinRootReal(filePath, rootDir) {
+    // First do the cheap logical check
+    if (!isPathWithinRoot(filePath, rootDir)) {
+        return false;
+    }
+    // Then verify with realpath to catch symlink escapes
+    try {
+        const realPath = fs.realpathSync(path.resolve(rootDir, filePath));
+        const realRoot = fs.realpathSync(rootDir);
+        return realPath.startsWith(realRoot + path.sep) || realPath === realRoot;
+    }
+    catch {
+        // If realpath fails (broken symlink, permissions), fall back to logical check
+        return true;
+    }
+}
+/**
+ * Safely parse JSON with a fallback value.
+ * Prevents crashes from corrupted database metadata.
+ */
+function safeJsonParse(value, fallback) {
+    try {
+        return JSON.parse(value);
+    }
+    catch {
+        return fallback;
+    }
+}
+/**
+ * Clamp a numeric value to a range.
+ * Used to enforce sane limits on MCP tool inputs.
+ */
+function clamp(value, min, max) {
+    return Math.max(min, Math.min(max, value));
+}
+/**
+ * Normalize a file path to use forward slashes.
+ * Fixes Windows backslash paths so glob matching works consistently.
+ */
+function normalizePath(filePath) {
+    return filePath.replace(/\\/g, '/');
+}
+/**
+ * Cross-process file lock using a lock file with PID tracking.
+ *
+ * Prevents multiple processes (e.g., git hooks, CLI, MCP server) from
+ * writing to the same database simultaneously.
+ */
+class FileLock {
+    lockPath;
+    held = false;
+    /** Locks older than this are considered stale regardless of PID status */
+    static STALE_TIMEOUT_MS = 2 * 60 * 1000; // 2 minutes
+    constructor(lockPath) {
+        this.lockPath = lockPath;
+    }
+    /**
+     * Acquire the lock. Throws if the lock is held by another live process.
+     */
+    acquire() {
+        // Check for existing lock
+        if (fs.existsSync(this.lockPath)) {
+            try {
+                const content = fs.readFileSync(this.lockPath, 'utf-8').trim();
+                const pid = parseInt(content, 10);
+                const stat = fs.statSync(this.lockPath);
+                const lockAge = Date.now() - stat.mtimeMs;
+                // Treat locks older than the timeout as stale, regardless of PID
+                if (lockAge < FileLock.STALE_TIMEOUT_MS && !isNaN(pid) && this.isProcessAlive(pid)) {
+                    throw new Error(`CodeGraph database is locked by another process (PID ${pid}). ` +
+                        `If this is stale, run 'codegraph unlock' or delete ${this.lockPath}`);
+                }
+                // Stale lock (dead process or timed out) - remove it
+                fs.unlinkSync(this.lockPath);
+            }
+            catch (err) {
+                if (err instanceof Error && err.message.includes('locked by another')) {
+                    throw err;
+                }
+                // Other errors reading lock file - try to remove it
+                try {
+                    fs.unlinkSync(this.lockPath);
+                }
+                catch { /* ignore */ }
+            }
+        }
+        // Write our PID to the lock file using exclusive create flag
+        try {
+            fs.writeFileSync(this.lockPath, String(process.pid), { flag: 'wx' });
+            this.held = true;
+        }
+        catch (err) {
+            if (err.code === 'EEXIST') {
+                // Race condition: another process grabbed the lock between our check and write
+                throw new Error('CodeGraph database is locked by another process. ' +
+                    `If this is stale, run 'codegraph unlock' or delete ${this.lockPath}`);
+            }
+            throw err;
+        }
+    }
+    /**
+     * Release the lock
+     */
+    release() {
+        if (!this.held)
+            return;
+        try {
+            // Only remove if we still own it (check PID)
+            const content = fs.readFileSync(this.lockPath, 'utf-8').trim();
+            if (parseInt(content, 10) === process.pid) {
+                fs.unlinkSync(this.lockPath);
+            }
+        }
+        catch {
+            // Lock file already gone - that's fine
+        }
+        this.held = false;
+    }
+    /**
+     * Execute a function while holding the lock
+     */
+    withLock(fn) {
+        this.acquire();
+        try {
+            return fn();
+        }
+        finally {
+            this.release();
+        }
+    }
+    /**
+     * Execute an async function while holding the lock
+     */
+    async withLockAsync(fn) {
+        this.acquire();
+        try {
+            return await fn();
+        }
+        finally {
+            this.release();
+        }
+    }
+    /**
+     * Check if a process is still running
+     */
+    isProcessAlive(pid) {
+        try {
+            process.kill(pid, 0);
+            return true;
+        }
+        catch {
+            return false;
+        }
+    }
+}
+exports.FileLock = FileLock;
+/**
+ * Process items in batches to manage memory
+ *
+ * @param items - Array of items to process
+ * @param batchSize - Number of items per batch
+ * @param processor - Function to process each item
+ * @param onBatchComplete - Optional callback after each batch
+ * @returns Array of results
+ */
+async function processInBatches(items, batchSize, processor, onBatchComplete) {
+    const results = [];
+    for (let i = 0; i < items.length; i += batchSize) {
+        const batch = items.slice(i, Math.min(i + batchSize, items.length));
+        const batchResults = await Promise.all(batch.map((item, idx) => processor(item, i + idx)));
+        results.push(...batchResults);
+        if (onBatchComplete) {
+            onBatchComplete(Math.min(i + batchSize, items.length), items.length);
+        }
+        // Allow GC between batches
+        if (global.gc) {
+            global.gc();
+        }
+    }
+    return results;
+}
+/**
+ * Simple mutex lock for preventing concurrent operations
+ */
+class Mutex {
+    locked = false;
+    waitQueue = [];
+    /**
+     * Acquire the lock
+     *
+     * @returns A release function to call when done
+     */
+    async acquire() {
+        while (this.locked) {
+            await new Promise((resolve) => {
+                this.waitQueue.push(resolve);
+            });
+        }
+        this.locked = true;
+        return () => {
+            this.locked = false;
+            const next = this.waitQueue.shift();
+            if (next) {
+                next();
+            }
+        };
+    }
+    /**
+     * Execute a function while holding the lock
+     */
+    async withLock(fn) {
+        const release = await this.acquire();
+        try {
+            return await fn();
+        }
+        finally {
+            release();
+        }
+    }
+    /**
+     * Check if the lock is currently held
+     */
+    isLocked() {
+        return this.locked;
+    }
+}
+exports.Mutex = Mutex;
+/**
+ * Chunked file reader for large files
+ *
+ * Reads a file in chunks to avoid loading entire file into memory.
+ */
+async function* readFileInChunks(filePath, chunkSize = 64 * 1024) {
+    const fs = await Promise.resolve().then(() => __importStar(require('fs')));
+    const fd = fs.openSync(filePath, 'r');
+    const buffer = Buffer.alloc(chunkSize);
+    try {
+        let bytesRead;
+        while ((bytesRead = fs.readSync(fd, buffer, 0, chunkSize, null)) > 0) {
+            yield buffer.toString('utf-8', 0, bytesRead);
+        }
+    }
+    finally {
+        fs.closeSync(fd);
+    }
+}
+/**
+ * Debounce a function
+ *
+ * @param fn - Function to debounce
+ * @param delay - Delay in milliseconds
+ * @returns Debounced function
+ */
+function debounce(fn, delay) {
+    let timeoutId = null;
+    return (...args) => {
+        if (timeoutId) {
+            clearTimeout(timeoutId);
+        }
+        timeoutId = setTimeout(() => {
+            fn(...args);
+            timeoutId = null;
+        }, delay);
+    };
+}
+/**
+ * Throttle a function
+ *
+ * @param fn - Function to throttle
+ * @param limit - Minimum time between calls in milliseconds
+ * @returns Throttled function
+ */
+function throttle(fn, limit) {
+    let lastCall = 0;
+    let timeoutId = null;
+    return (...args) => {
+        const now = Date.now();
+        const remaining = limit - (now - lastCall);
+        if (remaining <= 0) {
+            if (timeoutId) {
+                clearTimeout(timeoutId);
+                timeoutId = null;
+            }
+            lastCall = now;
+            fn(...args);
+        }
+        else if (!timeoutId) {
+            timeoutId = setTimeout(() => {
+                lastCall = Date.now();
+                timeoutId = null;
+                fn(...args);
+            }, remaining);
+        }
+    };
+}
+/**
+ * Estimate memory usage of an object (rough approximation)
+ *
+ * @param obj - Object to measure
+ * @returns Approximate size in bytes
+ */
+function estimateSize(obj) {
+    const seen = new WeakSet();
+    function sizeOf(value) {
+        if (value === null || value === undefined) {
+            return 0;
+        }
+        switch (typeof value) {
+            case 'boolean':
+                return 4;
+            case 'number':
+                return 8;
+            case 'string':
+                return 2 * value.length;
+            case 'object':
+                if (seen.has(value)) {
+                    return 0;
+                }
+                seen.add(value);
+                if (Array.isArray(value)) {
+                    return value.reduce((acc, item) => acc + sizeOf(item), 0);
+                }
+                return Object.entries(value).reduce((acc, [key, val]) => acc + sizeOf(key) + sizeOf(val), 0);
+            default:
+                return 0;
+        }
+    }
+    return sizeOf(obj);
+}
+/**
+ * Memory monitor for tracking usage during operations
+ */
+class MemoryMonitor {
+    checkInterval = null;
+    peakUsage = 0;
+    threshold;
+    onThresholdExceeded;
+    constructor(thresholdMB = 500, onThresholdExceeded) {
+        this.threshold = thresholdMB * 1024 * 1024;
+        this.onThresholdExceeded = onThresholdExceeded;
+    }
+    /**
+     * Start monitoring memory usage
+     */
+    start(intervalMs = 1000) {
+        this.stop();
+        this.peakUsage = 0;
+        this.checkInterval = setInterval(() => {
+            const usage = process.memoryUsage().heapUsed;
+            if (usage > this.peakUsage) {
+                this.peakUsage = usage;
+            }
+            if (usage > this.threshold && this.onThresholdExceeded) {
+                this.onThresholdExceeded(usage);
+            }
+        }, intervalMs);
+    }
+    /**
+     * Stop monitoring
+     */
+    stop() {
+        if (this.checkInterval) {
+            clearInterval(this.checkInterval);
+            this.checkInterval = null;
+        }
+    }
+    /**
+     * Get peak memory usage in bytes
+     */
+    getPeakUsage() {
+        return this.peakUsage;
+    }
+    /**
+     * Get current memory usage in bytes
+     */
+    getCurrentUsage() {
+        return process.memoryUsage().heapUsed;
+    }
+}
+exports.MemoryMonitor = MemoryMonitor;
+//# sourceMappingURL=utils.js.map

package/dist/utils.js.map

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package/dist/vectors/embedder.d.ts

@@ -0,0 +1,121 @@
+/**
+ * Text Embedder
+ *
+ * Generates vector embeddings through the Gemini API. Vector storage and
+ * similarity search remain local.
+ */
+/**
+ * Default Gemini embedding model.
+ */
+export declare const DEFAULT_MODEL = "gemini-embedding-2";
+export declare const EMBEDDING_DIMENSION = 768;
+/**
+ * Options for the embedder
+ */
+export interface EmbedderOptions {
+    /** Gemini API key */
+    apiKey?: string;
+    /** Model ID to use (default: gemini-embedding-2) */
+    modelId?: string;
+    /** Embedding dimension to request from Gemini */
+    outputDimensionality?: number;
+    /** Whether to show progress during embedding generation */
+    showProgress?: boolean;
+}
+/**
+ * Text embedding result
+ */
+export interface EmbeddingResult {
+    /** The embedding vector */
+    embedding: Float32Array;
+    /** Dimension of the embedding */
+    dimension: number;
+    /** Model used to generate the embedding */
+    model: string;
+}
+/**
+ * Batch embedding result
+ */
+export interface BatchEmbeddingResult {
+    /** Array of embeddings in same order as input */
+    embeddings: Float32Array[];
+    /** Dimension of each embedding */
+    dimension: number;
+    /** Model used to generate embeddings */
+    model: string;
+    /** Processing time in milliseconds */
+    durationMs: number;
+}
+/**
+ * Text Embedder using Gemini.
+ *
+ * Batch generation uses batchEmbedContents with one request per node text. Do
+ * not combine multiple nodes into one content.parts array because that produces
+ * a single aggregate embedding instead of node-level vectors.
+ */
+export declare class TextEmbedder {
+    private apiKey?;
+    private modelId;
+    private dimension;
+    private initialized;
+    private lastRequestAt;
+    constructor(options?: EmbedderOptions);
+    /**
+     * Initialize the embedder by validating configuration.
+     */
+    initialize(): Promise<void>;
+    /**
+     * Check if the embedder is initialized
+     */
+    isInitialized(): boolean;
+    /**
+     * Get the model ID being used
+     */
+    getModelId(): string;
+    /**
+     * Get the embedding dimension
+     */
+    getDimension(): number;
+    /**
+     * Generate embedding for a single text
+     */
+    embed(text: string): Promise<EmbeddingResult>;
+    /**
+     * Generate embedding for a query.
+     */
+    embedQuery(query: string): Promise<EmbeddingResult>;
+    /**
+     * Generate embeddings for multiple texts in node order.
+     */
+    embedBatch(texts: string[], type?: 'document' | 'search_query'): Promise<BatchEmbeddingResult>;
+    private embedPreparedBatch;
+    private throttleRequests;
+    /**
+     * Prepare text for retrieval-oriented embedding.
+     */
+    private prepareText;
+    /**
+     * Create text representation of a code node for embedding.
+     */
+    static createNodeText(node: {
+        name: string;
+        kind: string;
+        qualifiedName?: string;
+        signature?: string;
+        docstring?: string;
+        filePath: string;
+    }): string;
+    /**
+     * Compute cosine similarity between two embeddings
+     */
+    static cosineSimilarity(a: Float32Array, b: Float32Array): number;
+    /**
+     * Release resources
+     */
+    dispose(): void;
+}
+/**
+ * Create a text embedder instance
+ */
+export declare function createEmbedder(options?: EmbedderOptions): TextEmbedder;
+//# sourceMappingURL=embedder.d.ts.map

package/dist/vectors/embedder.d.ts.map

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