@stoneforge/quarry 0.1.0

package/dist/cli/commands/admin.js

@@ -0,0 +1,465 @@
+/**
+ * Admin Commands - System health and maintenance operations
+ *
+ * Provides commands for:
+ * - doctor: Check system health and diagnose issues
+ * - migrate: Run database migrations
+ */
+import { existsSync } from 'node:fs';
+import { join } from 'node:path';
+import { success, failure, ExitCode } from '../types.js';
+import { createStorage } from '@stoneforge/storage';
+import { initializeSchema, getSchemaVersion, isSchemaUpToDate, getPendingMigrations, validateSchema, CURRENT_SCHEMA_VERSION, MIGRATIONS, } from '@stoneforge/storage';
+import { resolveDatabasePath, STONEFORGE_DIR, DEFAULT_DB_NAME } from '../db.js';
+async function doctorHandler(_args, options) {
+    const diagnostics = [];
+    // 1. Check workspace exists
+    const stoneforgeDir = join(process.cwd(), STONEFORGE_DIR);
+    const workspaceExists = existsSync(stoneforgeDir);
+    if (!workspaceExists && !options.db) {
+        diagnostics.push({
+            name: 'workspace',
+            status: 'error',
+            message: 'No .stoneforge directory found',
+            details: { path: stoneforgeDir },
+        });
+        return buildDoctorResult(diagnostics, options);
+    }
+    diagnostics.push({
+        name: 'workspace',
+        status: 'ok',
+        message: options.db ? `Using custom database path: ${options.db}` : `Workspace found at ${stoneforgeDir}`,
+    });
+    // 2. Check database file exists
+    const dbPath = resolveDatabasePath(options);
+    if (!dbPath) {
+        diagnostics.push({
+            name: 'database',
+            status: 'error',
+            message: 'Database file not found',
+            details: { expectedPath: join(stoneforgeDir, DEFAULT_DB_NAME) },
+        });
+        return buildDoctorResult(diagnostics, options);
+    }
+    diagnostics.push({
+        name: 'database',
+        status: 'ok',
+        message: `Database found at ${dbPath}`,
+    });
+    // 3. Check database can be opened
+    let backend;
+    try {
+        // Use create: true to allow opening existing databases without error
+        // This doesn't create a new database, just allows opening existing ones
+        backend = createStorage({ path: dbPath, create: true });
+        diagnostics.push({
+            name: 'connection',
+            status: 'ok',
+            message: 'Database connection successful',
+        });
+    }
+    catch (err) {
+        const message = err instanceof Error ? err.message : String(err);
+        diagnostics.push({
+            name: 'connection',
+            status: 'error',
+            message: `Failed to open database: ${message}`,
+        });
+        return buildDoctorResult(diagnostics, options);
+    }
+    // 4. Check schema version
+    const schemaVersion = getSchemaVersion(backend);
+    const schemaUpToDate = isSchemaUpToDate(backend);
+    if (schemaVersion === 0) {
+        diagnostics.push({
+            name: 'schema_version',
+            status: 'error',
+            message: 'Database schema not initialized',
+            details: { currentVersion: 0, expectedVersion: CURRENT_SCHEMA_VERSION },
+        });
+    }
+    else if (!schemaUpToDate) {
+        const pendingMigrations = getPendingMigrations(backend);
+        diagnostics.push({
+            name: 'schema_version',
+            status: 'warning',
+            message: `Schema version ${schemaVersion} is behind (current: ${CURRENT_SCHEMA_VERSION})`,
+            details: {
+                currentVersion: schemaVersion,
+                expectedVersion: CURRENT_SCHEMA_VERSION,
+                pendingMigrations: pendingMigrations.map((m) => ({
+                    version: m.version,
+                    description: m.description,
+                })),
+            },
+        });
+    }
+    else {
+        diagnostics.push({
+            name: 'schema_version',
+            status: 'ok',
+            message: `Schema is at version ${schemaVersion} (up to date)`,
+        });
+    }
+    // 5. Validate schema tables
+    const schemaValidation = validateSchema(backend);
+    if (!schemaValidation.valid) {
+        diagnostics.push({
+            name: 'schema_tables',
+            status: 'error',
+            message: `Missing tables: ${schemaValidation.missingTables.join(', ')}`,
+            details: {
+                missingTables: schemaValidation.missingTables,
+                extraTables: schemaValidation.extraTables,
+            },
+        });
+    }
+    else {
+        diagnostics.push({
+            name: 'schema_tables',
+            status: 'ok',
+            message: 'All expected tables present',
+            details: schemaValidation.extraTables.length > 0
+                ? { extraTables: schemaValidation.extraTables }
+                : undefined,
+        });
+    }
+    // 6. Check database integrity
+    try {
+        const integrityResult = backend.query('PRAGMA integrity_check');
+        if (integrityResult.length === 1 && integrityResult[0].integrity_check === 'ok') {
+            diagnostics.push({
+                name: 'integrity',
+                status: 'ok',
+                message: 'Database integrity check passed',
+            });
+        }
+        else {
+            diagnostics.push({
+                name: 'integrity',
+                status: 'error',
+                message: 'Database integrity check failed',
+                details: { issues: integrityResult.map((r) => r.integrity_check) },
+            });
+        }
+    }
+    catch (err) {
+        const message = err instanceof Error ? err.message : String(err);
+        diagnostics.push({
+            name: 'integrity',
+            status: 'error',
+            message: `Integrity check failed: ${message}`,
+        });
+    }
+    // 7. Check foreign key integrity
+    try {
+        const fkResult = backend.query('PRAGMA foreign_key_check');
+        if (fkResult.length === 0) {
+            diagnostics.push({
+                name: 'foreign_keys',
+                status: 'ok',
+                message: 'Foreign key constraints satisfied',
+            });
+        }
+        else {
+            diagnostics.push({
+                name: 'foreign_keys',
+                status: 'warning',
+                message: `${fkResult.length} foreign key violations found`,
+                details: {
+                    violations: fkResult.slice(0, 10).map((r) => ({
+                        table: r.table,
+                        rowid: r.rowid,
+                        parent: r.parent,
+                    })),
+                    totalViolations: fkResult.length,
+                },
+            });
+        }
+    }
+    catch (err) {
+        const message = err instanceof Error ? err.message : String(err);
+        diagnostics.push({
+            name: 'foreign_keys',
+            status: 'warning',
+            message: `Foreign key check failed: ${message}`,
+        });
+    }
+    // 8. Check blocked cache consistency
+    try {
+        // Check 1: Orphaned entries - cache entries referencing elements that don't exist
+        const orphanedCache = backend.query(`
+      SELECT COUNT(*) as count
+      FROM blocked_cache bc
+      LEFT JOIN elements e ON bc.element_id = e.id
+      WHERE e.id IS NULL
+    `);
+        // Check 2: Tasks with status='blocked' but no blocked_cache entry
+        // These are tasks that have blocked status but the cache doesn't know about them
+        const tasksWithBlockedStatusMissingCache = backend.query(`
+      SELECT COUNT(*) as count
+      FROM elements e
+      WHERE e.deleted_at IS NULL
+        AND e.type = 'task'
+        AND json_extract(e.data, '$.status') = 'blocked'
+        AND e.id NOT IN (SELECT element_id FROM blocked_cache)
+    `);
+        // Check 3: Get total counts for diagnostics
+        const blockedCacheCount = backend.query('SELECT COUNT(*) as count FROM blocked_cache');
+        const blockedStatusCount = backend.query(`
+      SELECT COUNT(*) as count
+      FROM elements e
+      WHERE e.deleted_at IS NULL
+        AND e.type = 'task'
+        AND json_extract(e.data, '$.status') = 'blocked'
+    `);
+        const orphanCount = orphanedCache[0].count;
+        const missingCacheCount = tasksWithBlockedStatusMissingCache[0].count;
+        const cacheEntries = blockedCacheCount[0].count;
+        const tasksWithBlockedStatus = blockedStatusCount[0].count;
+        if (orphanCount === 0 && missingCacheCount === 0) {
+            diagnostics.push({
+                name: 'blocked_cache',
+                status: 'ok',
+                message: 'Blocked cache is consistent',
+                details: options.verbose ? { cacheEntries, tasksWithBlockedStatus } : undefined,
+            });
+        }
+        else {
+            const issues = [];
+            const details = { cacheEntries, tasksWithBlockedStatus };
+            if (orphanCount > 0) {
+                issues.push(`${orphanCount} orphaned cache entries`);
+                details.orphanedCount = orphanCount;
+            }
+            if (missingCacheCount > 0) {
+                issues.push(`${missingCacheCount} blocked tasks missing from cache`);
+                details.missingCacheCount = missingCacheCount;
+            }
+            diagnostics.push({
+                name: 'blocked_cache',
+                status: 'warning',
+                message: `Blocked cache inconsistent: ${issues.join(', ')}. Cache may need rebuild.`,
+                details,
+            });
+        }
+    }
+    catch (err) {
+        const message = err instanceof Error ? err.message : String(err);
+        diagnostics.push({
+            name: 'blocked_cache',
+            status: 'warning',
+            message: `Blocked cache check failed: ${message}`,
+        });
+    }
+    // 9. Check database statistics
+    try {
+        const stats = backend.getStats();
+        diagnostics.push({
+            name: 'storage',
+            status: 'ok',
+            message: `Database size: ${formatBytes(stats.fileSize)}`,
+            details: { fileSize: stats.fileSize },
+        });
+    }
+    catch (err) {
+        const message = err instanceof Error ? err.message : String(err);
+        diagnostics.push({
+            name: 'storage',
+            status: 'warning',
+            message: `Could not get storage stats: ${message}`,
+        });
+    }
+    return buildDoctorResult(diagnostics, options);
+}
+/**
+ * Format bytes to human-readable size
+ */
+function formatBytes(bytes) {
+    if (bytes === 0)
+        return '0 B';
+    const k = 1024;
+    const sizes = ['B', 'KB', 'MB', 'GB'];
+    const i = Math.floor(Math.log(bytes) / Math.log(k));
+    return `${parseFloat((bytes / Math.pow(k, i)).toFixed(1))} ${sizes[i]}`;
+}
+/**
+ * Build the doctor result from diagnostics
+ */
+function buildDoctorResult(diagnostics, options) {
+    const summary = {
+        ok: diagnostics.filter((d) => d.status === 'ok').length,
+        warning: diagnostics.filter((d) => d.status === 'warning').length,
+        error: diagnostics.filter((d) => d.status === 'error').length,
+    };
+    const healthy = summary.error === 0;
+    const result = {
+        healthy,
+        diagnostics,
+        summary,
+    };
+    // Build human-readable output
+    const lines = [];
+    lines.push('System Health Check');
+    lines.push('');
+    for (const diag of diagnostics) {
+        const statusIcon = diag.status === 'ok' ? '[OK]' : diag.status === 'warning' ? '[WARN]' : '[ERROR]';
+        lines.push(`${statusIcon} ${diag.name}: ${diag.message}`);
+        if (options.verbose && diag.details) {
+            for (const [key, value] of Object.entries(diag.details)) {
+                const valueStr = typeof value === 'object' ? JSON.stringify(value) : String(value);
+                lines.push(`     ${key}: ${valueStr}`);
+            }
+        }
+    }
+    lines.push('');
+    lines.push(`Summary: ${summary.ok} ok, ${summary.warning} warnings, ${summary.error} errors`);
+    if (healthy) {
+        lines.push('');
+        lines.push('System is healthy.');
+    }
+    else {
+        lines.push('');
+        lines.push('Issues detected. Run "sf migrate" to fix schema issues.');
+    }
+    return {
+        exitCode: healthy ? ExitCode.SUCCESS : ExitCode.GENERAL_ERROR,
+        data: result,
+        message: lines.join('\n'),
+    };
+}
+async function migrateHandler(_args, options) {
+    // Check if database path can be resolved
+    const dbPath = resolveDatabasePath(options, false);
+    if (!dbPath) {
+        return failure('No database found. Run "sf init" to initialize a workspace, or specify --db path', ExitCode.GENERAL_ERROR);
+    }
+    // For dry-run, we need the database to exist
+    if (options.dryRun && !existsSync(dbPath)) {
+        return failure('No database found. Run "sf init" to initialize a workspace, or specify --db path', ExitCode.GENERAL_ERROR);
+    }
+    // Open database
+    let backend;
+    try {
+        backend = createStorage({ path: dbPath, create: true });
+    }
+    catch (err) {
+        const message = err instanceof Error ? err.message : String(err);
+        return failure(`Failed to open database: ${message}`, ExitCode.GENERAL_ERROR);
+    }
+    const previousVersion = getSchemaVersion(backend);
+    const pendingMigrations = getPendingMigrations(backend);
+    if (pendingMigrations.length === 0) {
+        return success({
+            previousVersion,
+            currentVersion: previousVersion,
+            migrationsApplied: [],
+        }, `Database is already at version ${previousVersion} (up to date)`);
+    }
+    // Dry run: just show what would be done
+    if (options.dryRun) {
+        const lines = [];
+        lines.push('Migrations to apply (dry run):');
+        lines.push('');
+        for (const migration of pendingMigrations) {
+            lines.push(`  v${migration.version}: ${migration.description}`);
+        }
+        lines.push('');
+        lines.push(`Run "sf migrate" without --dry-run to apply these migrations.`);
+        return success({
+            previousVersion,
+            currentVersion: previousVersion,
+            pendingMigrations: pendingMigrations.map((m) => ({
+                version: m.version,
+                description: m.description,
+            })),
+        }, lines.join('\n'));
+    }
+    // Apply migrations
+    try {
+        const result = initializeSchema(backend);
+        const currentVersion = getSchemaVersion(backend);
+        const migrationsApplied = result.applied.map((version) => {
+            const migration = MIGRATIONS.find((m) => m.version === version);
+            return {
+                version,
+                description: migration?.description ?? 'Unknown migration',
+            };
+        });
+        const lines = [];
+        lines.push('Migration complete');
+        lines.push('');
+        lines.push(`Previous version: ${previousVersion}`);
+        lines.push(`Current version: ${currentVersion}`);
+        lines.push('');
+        if (migrationsApplied.length > 0) {
+            lines.push('Migrations applied:');
+            for (const m of migrationsApplied) {
+                lines.push(`  v${m.version}: ${m.description}`);
+            }
+        }
+        return success({
+            previousVersion,
+            currentVersion,
+            migrationsApplied,
+        }, lines.join('\n'));
+    }
+    catch (err) {
+        const message = err instanceof Error ? err.message : String(err);
+        return failure(`Migration failed: ${message}`, ExitCode.GENERAL_ERROR);
+    }
+}
+// ============================================================================
+// Command Definitions
+// ============================================================================
+export const doctorCommand = {
+    name: 'doctor',
+    description: 'Check system health and diagnose issues',
+    usage: 'sf doctor',
+    help: `Check system health and diagnose issues.
+
+Performs the following checks:
+- Workspace exists (.stoneforge directory)
+- Database file exists and can be opened
+- Schema version is current
+- All expected tables are present
+- Database integrity check (PRAGMA integrity_check)
+- Foreign key constraint validation
+- Blocked cache consistency
+- Storage statistics
+
+Use --verbose to see detailed diagnostic information.
+
+Examples:
+  sf doctor              Run all diagnostics
+  sf doctor --verbose    Show detailed information
+  sf doctor --json       Output as JSON`,
+    handler: doctorHandler,
+};
+export const migrateCommand = {
+    name: 'migrate',
+    description: 'Run database migrations',
+    usage: 'sf migrate [--dry-run]',
+    help: `Run database migrations to update the schema.
+
+Migrations are run automatically when needed, but this command can be used to:
+- Check what migrations would be applied (--dry-run)
+- Manually trigger migration
+- Verify migration status
+
+Options:
+  --dry-run    Show what migrations would be applied without running them
+
+Examples:
+  sf migrate             Run pending migrations
+  sf migrate --dry-run   Preview migrations without applying`,
+    options: [
+        {
+            name: 'dry-run',
+            description: 'Show what would be done without making changes',
+            hasValue: false,
+        },
+    ],
+    handler: migrateHandler,
+};
+//# sourceMappingURL=admin.js.map

package/dist/cli/commands/admin.js.map

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package/dist/cli/commands/alias.d.ts

@@ -0,0 +1,8 @@
+/**
+ * Alias Command - Show and manage command aliases
+ *
+ * Displays available command aliases.
+ */
+import type { Command } from '../types.js';
+export declare const aliasCommand: Command;
+//# sourceMappingURL=alias.d.ts.map

package/dist/cli/commands/alias.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"alias.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/alias.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,KAAK,EAAE,OAAO,EAAiB,MAAM,aAAa,CAAC;AA2D1D,eAAO,MAAM,YAAY,EAAE,OAsB1B,CAAC"}

package/dist/cli/commands/alias.js

@@ -0,0 +1,70 @@
+/**
+ * Alias Command - Show and manage command aliases
+ *
+ * Displays available command aliases.
+ */
+import { success } from '../types.js';
+import { getOutputMode, getFormatter } from '../formatter.js';
+import { getAllAliases } from '../runner.js';
+// ============================================================================
+// Handler
+// ============================================================================
+function aliasHandler(_args, options) {
+    const aliasMap = getAllAliases();
+    const mode = getOutputMode(options);
+    if (mode === 'json') {
+        const aliases = {};
+        for (const [alias, target] of aliasMap) {
+            aliases[alias] = target;
+        }
+        return success(aliases);
+    }
+    if (aliasMap.size === 0) {
+        return success(null, 'No aliases defined');
+    }
+    if (mode === 'quiet') {
+        const lines = [];
+        for (const [alias, target] of aliasMap) {
+            lines.push(`${alias}=${target}`);
+        }
+        return success(lines.join('\n'));
+    }
+    // Human-readable output
+    const formatter = getFormatter(mode);
+    const headers = ['ALIAS', 'COMMAND'];
+    const rows = [];
+    // Sort aliases alphabetically
+    const sortedAliases = Array.from(aliasMap.entries()).sort((a, b) => a[0].localeCompare(b[0]));
+    for (const [alias, target] of sortedAliases) {
+        rows.push([alias, target]);
+    }
+    const table = formatter.table(headers, rows);
+    return success(null, `Command Aliases:\n\n${table}`);
+}
+// ============================================================================
+// Command Definition
+// ============================================================================
+export const aliasCommand = {
+    name: 'alias',
+    description: 'Show command aliases',
+    usage: 'sf alias',
+    help: `Display all available command aliases.
+
+Aliases provide shorter or more intuitive names for existing commands.
+
+Examples:
+  sf alias              # Show all aliases
+  sf alias --json       # Output as JSON
+
+Built-in aliases:
+  add, new     -> create
+  rm, remove   -> delete
+  ls           -> list
+  s, get       -> show
+  todo, tasks  -> ready
+  done, complete -> close
+  st           -> status`,
+    options: [],
+    handler: aliasHandler,
+};
+//# sourceMappingURL=alias.js.map

package/dist/cli/commands/alias.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"alias.js","sourceRoot":"","sources":["../../../src/cli/commands/alias.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAGH,OAAO,EAAE,OAAO,EAAE,MAAM,aAAa,CAAC;AACtC,OAAO,EAAE,aAAa,EAAE,YAAY,EAAE,MAAM,iBAAiB,CAAC;AAC9D,OAAO,EAAE,aAAa,EAAE,MAAM,cAAc,CAAC;AAG7C,+EAA+E;AAC/E,UAAU;AACV,+EAA+E;AAE/E,SAAS,YAAY,CACnB,KAAe,EACf,OAAsB;IAEtB,MAAM,QAAQ,GAAG,aAAa,EAAE,CAAC;IACjC,MAAM,IAAI,GAAG,aAAa,CAAC,OAAO,CAAC,CAAC;IAEpC,IAAI,IAAI,KAAK,MAAM,EAAE,CAAC;QACpB,MAAM,OAAO,GAA2B,EAAE,CAAC;QAC3C,KAAK,MAAM,CAAC,KAAK,EAAE,MAAM,CAAC,IAAI,QAAQ,EAAE,CAAC;YACvC,OAAO,CAAC,KAAK,CAAC,GAAG,MAAM,CAAC;QAC1B,CAAC;QACD,OAAO,OAAO,CAAC,OAAO,CAAC,CAAC;IAC1B,CAAC;IAED,IAAI,QAAQ,CAAC,IAAI,KAAK,CAAC,EAAE,CAAC;QACxB,OAAO,OAAO,CAAC,IAAI,EAAE,oBAAoB,CAAC,CAAC;IAC7C,CAAC;IAED,IAAI,IAAI,KAAK,OAAO,EAAE,CAAC;QACrB,MAAM,KAAK,GAAa,EAAE,CAAC;QAC3B,KAAK,MAAM,CAAC,KAAK,EAAE,MAAM,CAAC,IAAI,QAAQ,EAAE,CAAC;YACvC,KAAK,CAAC,IAAI,CAAC,GAAG,KAAK,IAAI,MAAM,EAAE,CAAC,CAAC;QACnC,CAAC;QACD,OAAO,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC;IACnC,CAAC;IAED,wBAAwB;IACxB,MAAM,SAAS,GAAG,YAAY,CAAC,IAAI,CAAC,CAAC;IACrC,MAAM,OAAO,GAAG,CAAC,OAAO,EAAE,SAAS,CAAC,CAAC;IACrC,MAAM,IAAI,GAAe,EAAE,CAAC;IAE5B,8BAA8B;IAC9B,MAAM,aAAa,GAAG,KAAK,CAAC,IAAI,CAAC,QAAQ,CAAC,OAAO,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CACjE,CAAC,CAAC,CAAC,CAAC,CAAC,aAAa,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CACzB,CAAC;IAEF,KAAK,MAAM,CAAC,KAAK,EAAE,MAAM,CAAC,IAAI,aAAa,EAAE,CAAC;QAC5C,IAAI,CAAC,IAAI,CAAC,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,CAAC;IAC7B,CAAC;IAED,MAAM,KAAK,GAAG,SAAS,CAAC,KAAK,CAAC,OAAO,EAAE,IAAI,CAAC,CAAC;IAC7C,OAAO,OAAO,CAAC,IAAI,EAAE,uBAAuB,KAAK,EAAE,CAAC,CAAC;AACvD,CAAC;AAED,+EAA+E;AAC/E,qBAAqB;AACrB,+EAA+E;AAE/E,MAAM,CAAC,MAAM,YAAY,GAAY;IACnC,IAAI,EAAE,OAAO;IACb,WAAW,EAAE,sBAAsB;IACnC,KAAK,EAAE,UAAU;IACjB,IAAI,EAAE;;;;;;;;;;;;;;;yBAeiB;IACvB,OAAO,EAAE,EAAE;IACX,OAAO,EAAE,YAAY;CACtB,CAAC"}

package/dist/cli/commands/channel.d.ts

@@ -0,0 +1,13 @@
+/**
+ * Channel Commands - Collection command interface for channels
+ *
+ * Provides CLI commands for channel operations:
+ * - channel create: Create a new channel
+ * - channel join: Join a channel
+ * - channel leave: Leave a channel
+ * - channel list: List channels
+ * - channel members: List channel members
+ */
+import type { Command } from '../types.js';
+export declare const channelCommand: Command;
+//# sourceMappingURL=channel.d.ts.map

package/dist/cli/commands/channel.d.ts.map

@@ -0,0 +1 @@
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