@stigmer/runner 3.36.0 → 3.37.1

package/dist/middleware/path-normalization.d.ts

@@ -19,7 +19,13 @@
  *    filesystem paths that a model may still echo back;
  *  - interior `..` segments that stay inside the root ("src/../notes.md" →
  *    "/notes.md") — the virtual resolver rejects `..` outright, so a safe
- *    interior collapse is repaired here rather than burning a tool round.
+ *    interior collapse is repaired here rather than burning a tool round;
+ *  - a `glob` PATTERN that opens with the real root ("{root}/src/*.go") to
+ *    its virtual form ("/src/*.go"). deepagents strips a pattern's leading
+ *    "/" and matches the rest under the search path, so a real-root pattern
+ *    silently matches nothing and the model goes looking with `ls`; the
+ *    benchmark's per-call record showed it doing so for three rounds. Only
+ *    that exact prefix is rewritten, never the pattern's wildcards.
  *
  * Nothing becomes newly reachable: escaping relatives ("../x") and
  * `~`-carrying paths are left raw so the upstream refusal keeps speaking,
@@ -38,9 +44,9 @@
  *
  * Tool matching is by bare built-in name, the house doctrine (an MCP server
  * is not expected to shadow a built-in name — see shared/tool-kind.ts); the
- * rewrite touches only the tool's path-bearing argument, never glob/grep
- * patterns. Install FIRST in the stack so every downstream middleware
- * observes canonical paths.
+ * rewrite touches the tool's path-bearing argument and, for `glob`, a
+ * real-root prefix of the pattern; nothing else in a pattern. Install FIRST
+ * in the stack so every downstream middleware observes canonical paths.
  */
 import type { StigmerMiddleware } from "./types.js";
 export interface PathNormalizationConfig {
@@ -63,6 +69,14 @@ export interface PathNormalizationConfig {
  * honestly), and paths already in canonical virtual form.
  */
 export declare function normalizeWorkspacePathArg(raw: string, rootDir: string): string | undefined;
+/**
+ * Rewrite a `glob` pattern that opens with the real workspace root to its
+ * virtual form, or return undefined to leave it untouched. Only a whole
+ * leading `{root}/` is replaced; a pattern that merely contains the root's
+ * text elsewhere, or is the root itself, is left as the model wrote it.
+ * Exported for direct unit testing.
+ */
+export declare function normalizeGlobPattern(pattern: string, rootDir: string): string | undefined;
 /**
  * Create the dialect-repair middleware (see module header). Stateless per
  * request; safe on every graph.

package/dist/middleware/path-normalization.js

@@ -19,7 +19,13 @@
  *    filesystem paths that a model may still echo back;
  *  - interior `..` segments that stay inside the root ("src/../notes.md" →
  *    "/notes.md") — the virtual resolver rejects `..` outright, so a safe
- *    interior collapse is repaired here rather than burning a tool round.
+ *    interior collapse is repaired here rather than burning a tool round;
+ *  - a `glob` PATTERN that opens with the real root ("{root}/src/*.go") to
+ *    its virtual form ("/src/*.go"). deepagents strips a pattern's leading
+ *    "/" and matches the rest under the search path, so a real-root pattern
+ *    silently matches nothing and the model goes looking with `ls`; the
+ *    benchmark's per-call record showed it doing so for three rounds. Only
+ *    that exact prefix is rewritten, never the pattern's wildcards.
  *
  * Nothing becomes newly reachable: escaping relatives ("../x") and
  * `~`-carrying paths are left raw so the upstream refusal keeps speaking,
@@ -38,9 +44,9 @@
  *
  * Tool matching is by bare built-in name, the house doctrine (an MCP server
  * is not expected to shadow a built-in name — see shared/tool-kind.ts); the
- * rewrite touches only the tool's path-bearing argument, never glob/grep
- * patterns. Install FIRST in the stack so every downstream middleware
- * observes canonical paths.
+ * rewrite touches the tool's path-bearing argument and, for `glob`, a
+ * real-root prefix of the pattern; nothing else in a pattern. Install FIRST
+ * in the stack so every downstream middleware observes canonical paths.
  */
 import { isAbsolute, relative, posix } from "node:path";
 /**
@@ -56,6 +62,9 @@ const PATH_ARG_BY_TOOL = new Map([
     ["write_file", "file_path"],
     ["edit_file", "file_path"],
 ]);
+/** The one built-in whose pattern can carry a path prefix, and its argument. */
+const GLOB_TOOL = "glob";
+const GLOB_PATTERN_ARG = "pattern";
 /**
  * Rewrite `raw` to its canonical virtual-absolute form, or return undefined
  * when the value must be left untouched. Exported for direct unit testing of
@@ -101,6 +110,19 @@ export function normalizeWorkspacePathArg(raw, rootDir) {
     const virtual = normalizedRel === "." ? "/" : `/${normalizedRel}`;
     return virtual === raw ? undefined : virtual;
 }
+/**
+ * Rewrite a `glob` pattern that opens with the real workspace root to its
+ * virtual form, or return undefined to leave it untouched. Only a whole
+ * leading `{root}/` is replaced; a pattern that merely contains the root's
+ * text elsewhere, or is the root itself, is left as the model wrote it.
+ * Exported for direct unit testing.
+ */
+export function normalizeGlobPattern(pattern, rootDir) {
+    const prefix = rootDir.endsWith("/") ? rootDir : `${rootDir}/`;
+    if (!pattern.startsWith(prefix) || pattern.length === prefix.length)
+        return undefined;
+    return `/${pattern.slice(prefix.length)}`;
+}
 /**
  * Create the dialect-repair middleware (see module header). Stateless per
  * request; safe on every graph.
@@ -113,18 +135,25 @@ export function createPathNormalizationMiddleware(config) {
             const argKey = PATH_ARG_BY_TOOL.get(request.toolCall.name);
             if (!argKey)
                 return handler(request);
-            const raw = request.toolCall.args[argKey];
-            if (typeof raw !== "string")
-                return handler(request);
-            const normalized = normalizeWorkspacePathArg(raw, rootDir);
-            if (normalized === undefined)
+            const args = request.toolCall.args;
+            const rewritten = {};
+            const raw = args[argKey];
+            if (typeof raw === "string") {
+                const normalized = normalizeWorkspacePathArg(raw, rootDir);
+                if (normalized !== undefined)
+                    rewritten[argKey] = normalized;
+            }
+            const pattern = args[GLOB_PATTERN_ARG];
+            if (request.toolCall.name === GLOB_TOOL && typeof pattern === "string") {
+                const normalized = normalizeGlobPattern(pattern, rootDir);
+                if (normalized !== undefined)
+                    rewritten[GLOB_PATTERN_ARG] = normalized;
+            }
+            if (Object.keys(rewritten).length === 0)
                 return handler(request);
             return handler({
                 ...request,
-                toolCall: {
-                    ...request.toolCall,
-                    args: { ...request.toolCall.args, [argKey]: normalized },
-                },
+                toolCall: { ...request.toolCall, args: { ...args, ...rewritten } },
             });
         },
     };

package/dist/middleware/path-normalization.js.map

@@ -1 +1 @@
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package/dist/shared/model-client.d.ts

@@ -27,8 +27,16 @@ export interface BuildChatModelOptions {
         mcpServerId?: string;
         workflowExecutionId?: string;
     };
-    /** Defaults to 0. */
-    readonly temperature?: number;
+    /**
+     * Defaults to 0. `null` sends no sampling override at all, so the
+     * provider's default applies: the native execution turn passes it,
+     * because current Anthropic models refuse a temperature other than their
+     * default (claude-opus-4.7 and later, claude-sonnet-5, claude-fable-5;
+     * @langchain/anthropic throws before the request for some of them) and
+     * the Cursor harness sends none either (stigmer/stigmer#1341). Utility
+     * calls keep their deterministic 0.
+     */
+    readonly temperature?: number | null;
     /**
      * Pass-through only; intentionally no default. Anthropic requires a value,
      * but callers differ (setup omits it, call-llm uses 4096), so the default

package/dist/shared/model-client.js

@@ -169,7 +169,7 @@ export async function buildChatModel(opts) {
         ? { maxRetries: opts.maxRetries ?? 0 }
         : {};
     const common = {
-        temperature: opts.temperature ?? 0,
+        ...(opts.temperature === null ? {} : { temperature: opts.temperature ?? 0 }),
         apiKey,
         ...(maxTokens ? { maxTokens } : {}),
         ...maxRetries,

package/dist/shared/model-client.js.map

@@ -1 +1 @@
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package/dist/shared/subagent-gate.d.ts

@@ -11,6 +11,12 @@
  * the LLM adapt when a sub-agent cannot be started.
  */
 import { RunnableLambda, type RunnableConfig } from "@langchain/core/runnables";
+/**
+ * How many sub-agents run at once by default. The native prompt states this
+ * number to the model (`execute-deep-agent/prompt-builder.ts`), so it has one
+ * home: this constant.
+ */
+export declare const DEFAULT_MAX_CONCURRENT = 3;
 export interface SubAgentGateOptions {
     readonly maxConcurrent?: number;
 }

package/dist/shared/subagent-gate.js

@@ -11,7 +11,12 @@
  * the LLM adapt when a sub-agent cannot be started.
  */
 import { RunnableLambda } from "@langchain/core/runnables";
-const DEFAULT_MAX_CONCURRENT = 3;
+/**
+ * How many sub-agents run at once by default. The native prompt states this
+ * number to the model (`execute-deep-agent/prompt-builder.ts`), so it has one
+ * home: this constant.
+ */
+export const DEFAULT_MAX_CONCURRENT = 3;
 export class SubAgentGate {
     max;
     active = 0;

package/dist/shared/subagent-gate.js.map

@@ -1 +1 @@
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package/dist/shared/worker-shutdown.d.ts

@@ -1,12 +1,12 @@
 /**
  * Per-task-queue worker-shutdown signals — the classification channel that
  * lets an in-flight activity distinguish "my worker is shutting down" from
- * "the orchestrator cancelled me" (a user pause).
+ * "the orchestrator cancelled me" (a user's Pause or Cancel).
  *
  * The signal carries NO lifecycle authority: aborting it never stops a
  * worker or an activity (Temporal's own drain does that). It exists purely
  * so the activity's cancellation handling can classify the interruption
- * honestly — a shutdown is not a pause, and must surface as the
+ * honestly — a shutdown is not a user's stop, and must surface as the
  * worker-shutdown failure shape the control planes recognize (issue #776).
  *
  * Ownership contract:
@@ -63,13 +63,18 @@ export interface TurnInterruptionEvidence {
  * How Temporal's cancellation reads to the turn:
  *  - `worker-shutdown`: the runner is draining (the queue's signal, or the
  *    SDK's own `WORKER_SHUTDOWN`); FAILED with the shutdown copy, thrown.
- *  - `pause`: the workflow asked (`CANCELLED`, the Pause RPC's path);
- *    PAUSED, thrown.
+ *  - `orchestrator-stop`: the workflow asked (`CANCELLED`). That is a Pause
+ *    or a Cancel, and the turn cannot tell which: both reach the activity
+ *    as the same workflow-requested cancellation, and both RPCs signal the
+ *    engine before they persist the phase, so no stored fact tells them
+ *    apart in time. The turn settles its transcript with no phase and no
+ *    row, thrown; the workflow, which knows which stop it runs, writes the
+ *    phase and the stop row (stigmer#980).
  *  - `infrastructure`: the platform cancelled for its own reason (a heartbeat
  *    timeout, a closed run); FAILED with the unresponsive copy, thrown.
  *  - `none`: nothing was delivered.
  */
-export type TurnInterruption = "worker-shutdown" | "pause" | "infrastructure" | "none";
+export type TurnInterruption = "worker-shutdown" | "orchestrator-stop" | "infrastructure" | "none";
 /**
  * Classify how (whether) Temporal interrupted the turn, from the two live
  * facts: the reason on the cancellation signal and the queue's shutdown

package/dist/shared/worker-shutdown.js

@@ -1,12 +1,12 @@
 /**
  * Per-task-queue worker-shutdown signals — the classification channel that
  * lets an in-flight activity distinguish "my worker is shutting down" from
- * "the orchestrator cancelled me" (a user pause).
+ * "the orchestrator cancelled me" (a user's Pause or Cancel).
  *
  * The signal carries NO lifecycle authority: aborting it never stops a
  * worker or an activity (Temporal's own drain does that). It exists purely
  * so the activity's cancellation handling can classify the interruption
- * honestly — a shutdown is not a pause, and must surface as the
+ * honestly — a shutdown is not a user's stop, and must surface as the
  * worker-shutdown failure shape the control planes recognize (issue #776).
  *
  * Ownership contract:
@@ -89,6 +89,6 @@ export function classifyTurnInterruption(evidence) {
     if (shutdownSignalAborted || cancellationReason === "WORKER_SHUTDOWN") {
         return "worker-shutdown";
     }
-    return cancellationReason === "CANCELLED" ? "pause" : "infrastructure";
+    return cancellationReason === "CANCELLED" ? "orchestrator-stop" : "infrastructure";
 }
 //# sourceMappingURL=worker-shutdown.js.map

package/dist/shared/worker-shutdown.js.map

@@ -1 +1 @@
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package/dist/shared/workspace/sources/local-path.js

@@ -33,7 +33,11 @@ export function provisionLocalPath(options) {
         rootDir: path,
         sourceType: "local_path",
         consumedKeys: [],
-        workspaceDescription: `Your workspace is the user's project directory: ${path}\n` +
+        // No host path in the model's text: the native file tools see this
+        // directory as `/` and its commands run in it, so the path would only be
+        // echoed back where it cannot resolve (a glob pattern, a mistyped
+        // prefix). The directory is `rootDir`'s to carry.
+        workspaceDescription: "Your workspace is the user's project directory.\n" +
             "IMPORTANT: You are operating directly on the user's files. " +
             "Changes are immediate and persistent.\n" +
             "Use git to track and verify your changes before finalizing.",

package/dist/shared/workspace/sources/local-path.js.map

@@ -1 +1 @@
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+{"version":3,"file":"local-path.js","sourceRoot":"","sources":["../../../../src/shared/workspace/sources/local-path.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAE,UAAU,EAAE,QAAQ,EAAE,WAAW,EAAE,YAAY,EAAE,UAAU,EAAE,SAAS,EAAE,MAAM,SAAS,CAAC;AACjG,OAAO,EAAE,IAAI,EAAE,UAAU,EAAE,MAAM,WAAW,CAAC;AAC7C,OAAO,EAAE,YAAY,EAAE,MAAM,SAAS,CAAC;AACvC,OAAO,EACL,uBAAuB,GAExB,MAAM,aAAa,CAAC;AASrB,MAAM,UAAU,kBAAkB,CAAC,OAAkC;IACnE,MAAM,EAAE,IAAI,EAAE,WAAW,EAAE,YAAY,EAAE,cAAc,EAAE,GAAG,OAAO,CAAC;IAEpE,IAAI,CAAC,WAAW,EAAE,CAAC;QACjB,MAAM,IAAI,uBAAuB,CAC/B,YAAY,EACZ,mDAAmD;YACnD,qCAAqC,CACtC,CAAC;IACJ,CAAC;IAED,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,EAAE,CAAC;QACtB,MAAM,IAAI,uBAAuB,CAC/B,YAAY,EACZ,8CAA8C,IAAI,GAAG,CACtD,CAAC;IACJ,CAAC;IAED,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,EAAE,CAAC;QACtB,MAAM,IAAI,uBAAuB,CAC/B,YAAY,EACZ,yBAAyB,IAAI,GAAG,CACjC,CAAC;IACJ,CAAC;IAED,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,WAAW,EAAE,EAAE,CAAC;QAClC,MAAM,IAAI,uBAAuB,CAC/B,YAAY,EACZ,6BAA6B,IAAI,GAAG,CACrC,CAAC;IACJ,CAAC;IAED,IAAI,YAAY,IAAI,cAAc,EAAE,CAAC;QACnC,kBAAkB,CAAC,cAAc,EAAE,YAAY,EAAE,IAAI,CAAC,CAAC;IACzD,CAAC;IAED,OAAO;QACL,OAAO,EAAE,IAAI;QACb,UAAU,EAAE,YAAY;QACxB,YAAY,EAAE,EAAE;QAChB,mEAAmE;QACnE,yEAAyE;QACzE,kEAAkE;QAClE,kDAAkD;QAClD,oBAAoB,EAClB,mDAAmD;YACnD,6DAA6D;YAC7D,yCAAyC;YACzC,6DAA6D;QAC/D,SAAS,EAAE,EAAE;KACd,CAAC;AACJ,CAAC;AAED,SAAS,kBAAkB,CAAC,cAAsB,EAAE,YAAoB,EAAE,IAAY;IACpF,MAAM,QAAQ,GAAG,IAAI,CAAC,cAAc,EAAE,YAAY,CAAC,CAAC;IAEpD,IAAI,CAAC;QACH,MAAM,QAAQ,GAAG,YAAY,CAAC,QAAQ,CAAC,CAAC;QACxC,IAAI,YAAY,CAAC,QAAQ,CAAC,KAAK,YAAY,CAAC,IAAI,CAAC;YAAE,OAAO;QAC1D,UAAU,CAAC,QAAQ,CAAC,CAAC;IACvB,CAAC;IAAC,MAAM,CAAC;QACP,yCAAyC;IAC3C,CAAC;IAED,SAAS,CAAC,cAAc,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;IAC/C,WAAW,CAAC,IAAI,EAAE,QAAQ,CAAC,CAAC;AAC9B,CAAC"}

package/dist/tools/think-tool.d.ts

@@ -8,6 +8,13 @@
  *
  * Follows the Anthropic "think tool" pattern:
  * https://www.anthropic.com/engineering/claude-think-tool
+ *
+ * The description says when a call is worth it, because every call is a
+ * model round of its own: the whole prompt re-sent for a thought. The
+ * earlier text suggested one "after reading files or tool output", and the
+ * benchmark's per-call record showed think rounds right after reads and
+ * right before the reply. Whether the tool is bound at all is the thinking
+ * mode's question, not this module's.
  */
 import { z } from "zod";
 export declare function createThinkTool(): import("@langchain/core/tools").DynamicStructuredTool<z.ZodObject<{

package/dist/tools/think-tool.js

@@ -8,23 +8,22 @@
  *
  * Follows the Anthropic "think tool" pattern:
  * https://www.anthropic.com/engineering/claude-think-tool
+ *
+ * The description says when a call is worth it, because every call is a
+ * model round of its own: the whole prompt re-sent for a thought. The
+ * earlier text suggested one "after reading files or tool output", and the
+ * benchmark's per-call record showed think rounds right after reads and
+ * right before the reply. Whether the tool is bound at all is the thinking
+ * mode's question, not this module's.
  */
 import { tool } from "@langchain/core/tools";
 import { z } from "zod";
 export function createThinkTool() {
     return tool(async (_input) => "ok", {
         name: "think",
-        description: "Use this tool to think through a problem step-by-step. " +
-            "The think tool does not read files, execute commands, or make any changes — " +
-            "it simply records your reasoning. Call it when you need to pause and work " +
-            "something out before acting.\n\n" +
-            "Good times to use think:\n" +
-            "- After reading files or tool output, to analyse what you learned\n" +
-            "- Before a complex or multi-step operation, to plan your approach\n" +
-            "- When you need to choose between several possible strategies\n" +
-            "- When debugging — to reason about what might have gone wrong\n\n" +
-            "You do NOT need to use think for every step — only when genuine " +
-            "reasoning will improve the quality of your next action.",
+        description: "Record your reasoning when a decision is genuinely hard: choosing between approaches, " +
+            "or working out why something failed. It reads nothing and changes nothing. Do not use it " +
+            "to restate a tool result or to announce your next step; take the step.",
         schema: z.object({
             thought: z.string().describe("Your reasoning, analysis, or plan."),
         }),

package/dist/tools/think-tool.js.map

@@ -1 +1 @@
-{"version":3,"file":"think-tool.js","sourceRoot":"","sources":["../../src/tools/think-tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAEH,OAAO,EAAE,IAAI,EAAE,MAAM,uBAAuB,CAAC;AAC7C,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAExB,MAAM,UAAU,eAAe;IAC7B,OAAO,IAAI,CACT,KAAK,EAAE,MAA2B,EAAE,EAAE,CAAC,IAAI,EAC3C;QACE,IAAI,EAAE,OAAO;QACb,WAAW,EACT,yDAAyD;YACzD,8EAA8E;YAC9E,4EAA4E;YAC5E,kCAAkC;YAClC,4BAA4B;YAC5B,qEAAqE;YACrE,qEAAqE;YACrE,iEAAiE;YACjE,mEAAmE;YACnE,kEAAkE;YAClE,yDAAyD;QAC3D,MAAM,EAAE,CAAC,CAAC,MAAM,CAAC;YACf,OAAO,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,oCAAoC,CAAC;SACnE,CAAC;KACH,CACF,CAAC;AACJ,CAAC"}
+{"version":3,"file":"think-tool.js","sourceRoot":"","sources":["../../src/tools/think-tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;GAiBG;AAEH,OAAO,EAAE,IAAI,EAAE,MAAM,uBAAuB,CAAC;AAC7C,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAExB,MAAM,UAAU,eAAe;IAC7B,OAAO,IAAI,CACT,KAAK,EAAE,MAA2B,EAAE,EAAE,CAAC,IAAI,EAC3C;QACE,IAAI,EAAE,OAAO;QACb,WAAW,EACT,wFAAwF;YACxF,2FAA2F;YAC3F,wEAAwE;QAC1E,MAAM,EAAE,CAAC,CAAC,MAAM,CAAC;YACf,OAAO,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,oCAAoC,CAAC;SACnE,CAAC;KACH,CACF,CAAC;AACJ,CAAC"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@stigmer/runner",
-  "version": "3.36.0",
+  "version": "3.37.1",
   "description": "Embeddable Temporal worker for the Stigmer AI agent platform — handles agent execution, workflow orchestration, and MCP server management",
   "license": "Apache-2.0",
   "type": "module",
@@ -108,10 +108,10 @@
     "@opentelemetry/sdk-metrics": "^2.0.0",
     "@opentelemetry/sdk-trace-base": "^2.0.0",
     "@opentelemetry/sdk-trace-node": "^2.0.0",
-    "@stigmer/outbound": "3.36.0",
-    "@stigmer/protos": "3.36.0",
-    "@stigmer/temporal-codecs": "3.36.0",
-    "@stigmer/zip-structure": "3.36.0",
+    "@stigmer/outbound": "3.37.1",
+    "@stigmer/protos": "3.37.1",
+    "@stigmer/temporal-codecs": "3.37.1",
+    "@stigmer/zip-structure": "3.37.1",
     "@temporalio/activity": "1.16.2",
     "@temporalio/common": "1.16.2",
     "@temporalio/interceptors-opentelemetry": "1.16.2",

package/src/__test-utils__/harness-contract/runtime-contract.ts

@@ -594,12 +594,17 @@ function hangingTurn(before: string): TurnScenario {
 }
 
 /**
- * A user pause: Temporal's cancellation delivered while the engine hangs
- * persists PAUSED with the pause row written exactly once, no error, no
- * `completedAt`, and THROWS the pause `CancelledFailure` so the workflow
- * knows to wait.
+ * An orchestrator stop (a user's Pause or Cancel, one cancellation to the
+ * turn): Temporal's cancellation delivered while the engine hangs settles
+ * the transcript into one write that carries no phase and no row (the
+ * workflow writes both, stigmer#980), no error, no `completedAt`, and
+ * THROWS the stop's `CancelledFailure` so the workflow sees the activity
+ * stop.
  */
-export async function assertPausePersistsAndThrows(harness: RuntimeContractHarness, label = "rt-pause"): Promise<RuntimeArmResult> {
+export async function assertOrchestratorStopSettlesAndThrows(
+  harness: RuntimeContractHarness,
+  label = "rt-orchestrator-stop",
+): Promise<RuntimeArmResult> {
   const { subject } = harness;
   const driver = new RuntimeExecutionDriver(harness, label);
   let controls: InvocationControls | undefined;
@@ -607,16 +612,22 @@ export async function assertPausePersistsAndThrows(harness: RuntimeContractHarne
 
   const invocation = await driver.turn(hangingTurn("Starting on the parser."), { onControls: (c) => (controls = c) });
 
-  expect(threwCancelledFailure(invocation.outcome), `${subject.name}: a pause THROWS a CancelledFailure`).toBe(true);
+  expect(threwCancelledFailure(invocation.outcome), `${subject.name}: an orchestrator stop THROWS a CancelledFailure`).toBe(true);
   if (!threwCancelledFailure(invocation.outcome)) throw new Error("unreachable");
-  expect(invocation.outcome.error.message).toBe(TERMINAL_COPY.pause.throwMessage);
-  expect(driver.record.persistedPhases.at(-1)).toBe(ExecutionPhase.EXECUTION_PAUSED);
-  const final = finalStatusOf(harness, driver);
-  expect(final.error, `${subject.name}: a pause is not an error`).toBe("");
-  expect(final.completedAt, `${subject.name}: a paused turn is not complete`).toBe("");
-  expect(systemMessages(final), `${subject.name}: the pause row, exactly once`).toEqual([TERMINAL_COPY.pause.row]);
-  expect(aiMessages(final)).not.toContain(NEVER_SEEN);
-  return { driver, invocations: [invocation], final };
+  expect(invocation.outcome.error.message).toBe(TERMINAL_COPY.orchestratorStop.throwMessage);
+  expect(
+    driver.record.persistedPhases.at(-1),
+    `${subject.name}: the stop writes no phase; the last phase is the turn's own`,
+  ).toBe(ExecutionPhase.EXECUTION_IN_PROGRESS);
+  const settle = driver.record.persisted.at(-1);
+  if (!settle) throw new Error(`${subject.name}: the runtime persisted nothing`);
+  expect(settle.phase, `${subject.name}: the settle write carries no phase`).toBe(ExecutionPhase.EXECUTION_PHASE_UNSPECIFIED);
+  assertTranscriptStreamsNothing(subject.name, settle);
+  expect(settle.error, `${subject.name}: a stop is not an error`).toBe("");
+  expect(settle.completedAt, `${subject.name}: a stopped turn is not complete`).toBe("");
+  expect(systemMessages(settle), `${subject.name}: no stop row; the workflow writes it`).toEqual([]);
+  expect(aiMessages(settle)).not.toContain(NEVER_SEEN);
+  return { driver, invocations: [invocation], final: settle };
 }
 
 /**
@@ -970,9 +981,9 @@ export function describeHarnessRuntimeContract(harness: RuntimeContractHarness,
         await assertNonExecutingDecisionSettlesSkipped(harness, action);
       });
     }
-    it("a user pause persists PAUSED with the pause row once and throws the pause CancelledFailure", async () => {
+    it("an orchestrator stop settles the transcript with no phase and no row, and throws the stop's CancelledFailure", async () => {
       clock.reset();
-      await assertPausePersistsAndThrows(harness);
+      await assertOrchestratorStopSettlesAndThrows(harness);
     });
     it("a worker shutdown persists FAILED with the shutdown copy once and throws the shutdown CancelledFailure", async () => {
       clock.reset();

package/src/__test-utils__/hermetic-activity.ts

@@ -303,10 +303,12 @@ export class ExecutionRecord {
    * the tool call the runner wrote. The runner owns `status`; the server owns
    * `approval_action` (field ownership, 005 mandate 2) — so this is the ONE
    * place a test writes it, and the status stays WAITING_APPROVAL until the
-   * resumed turn runs the tool, exactly as in production.
+   * resumed turn runs the tool, exactly as in production. `onlyId` decides one
+   * of several calls paused in the same round and leaves the rest waiting, as
+   * a user deciding them one at a time does.
    */
-  decideWaitingToolCalls(action: ApprovalAction, decidedAt: string): number {
-    const waiting = this.waitingToolCalls();
+  decideWaitingToolCalls(action: ApprovalAction, decidedAt: string, onlyId?: string): number {
+    const waiting = this.waitingToolCalls().filter((tc) => onlyId === undefined || tc.id === onlyId);
     for (const tc of waiting) {
       tc.approvalAction = action;
       tc.approvalDecidedAt = decidedAt;
@@ -329,8 +331,11 @@ export class ExecutionRecord {
 
   /**
    * Apply one `UpdateStatus` write and answer the control signal the server
-   * would. A setup-progress report never carries a signal (the runner ignores
-   * the response there; the server has nothing to say about a label).
+   * would. A write with no phase never carries a signal (the runner ignores
+   * the response there). It is a setup-progress report, or the transcript an
+   * orchestrator stop settles (the runtime writes no phase for it; the
+   * workflow does, stigmer#980): the server's merge applies the transcript and
+   * leaves the phase to its writers, so the double keeps the held phase.
    */
   applyStatusUpdate(status: AgentExecutionStatus): ExecutionControlSignal {
     const snapshot = clone(AgentExecutionStatusSchema, status);
@@ -339,6 +344,12 @@ export class ExecutionRecord {
       if (snapshot.setupProgress?.currentPhase) {
         this.setupProgress.push(snapshot.setupProgress.currentPhase);
       }
+      if (snapshot.messages.length > 0) {
+        const heldPhase = this.execution.status?.phase ?? ExecutionPhase.EXECUTION_PHASE_UNSPECIFIED;
+        this.execution.status = clone(AgentExecutionStatusSchema, snapshot);
+        this.execution.status.phase = heldPhase;
+        for (const listener of [...this.persistListeners]) listener();
+      }
       return ExecutionControlSignal.UNSPECIFIED;
     }
     this.execution.status = clone(AgentExecutionStatusSchema, snapshot);

package/src/activities/execute-cursor/__tests__/hermetic/goldens/pause.status.json

@@ -4,14 +4,8 @@
       "type": "MESSAGE_AI",
       "content": "Starting on the parser.",
       "timestamp": "2026-01-01T00:00:02.000Z"
-    },
-    {
-      "type": "MESSAGE_SYSTEM",
-      "content": "Execution paused by user. Use resume to continue.",
-      "timestamp": "2026-01-01T00:00:03.000Z"
     }
   ],
-  "phase": "EXECUTION_PAUSED",
   "startedAt": "2026-01-01T00:00:00.000Z",
   "fileReviewEventStream": {
     "executionId": "aex_hermetic_0001",