@stigmer/runner 3.1.4 → 3.1.5

package/dist/shared/filereview/git-substrate.js.map

@@ -1 +1 @@
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package/dist/shared/workspace/git-identity.d.ts

@@ -0,0 +1,36 @@
+/**
+ * The public git identity for commits the agent authors on the user's behalf.
+ *
+ * Write-back commits (branch/commit/push/PR — see WriteBackCoordinator) land
+ * on real branches in the user's repository, so they carry a dedicated,
+ * recognizable agent identity in every mode — local and cloud alike. This is
+ * deliberate: a commit authored by the agent should never be silently
+ * attributed to whatever identity happens to live in the host's `~/.gitconfig`
+ * (local), and the cloud sandbox has no identity at all, which makes a bare
+ * `git commit` fail with "Author identity unknown".
+ *
+ * Distinct from the *internal* snapshot identity in
+ * `../filereview/git-substrate.ts` (`stigmer-runner <runner@stigmer.local>`):
+ * those commit objects are never on a branch and never pushed — they exist
+ * only to pin trees against GC. This identity is the public-facing one that
+ * appears in `git log`, on GitHub, and in pull requests.
+ */
+export declare const AGENT_GIT_AUTHOR_NAME = "Stigmer Agent";
+export declare const AGENT_GIT_AUTHOR_EMAIL = "noreply@stigmer.ai";
+/**
+ * `git -c` config flags that pin the agent identity for a single command.
+ *
+ * Per-command `-c` flags (rather than repo-local or global `git config`) keep
+ * the identity deterministic in every environment without mutating the user's
+ * repository config — the same never-mutate reasoning documented on
+ * `SNAPSHOT_IDENTITY_ENV` in `git-substrate.ts`. Env-var injection is not an
+ * option here: `WorkspaceBackend.execute()` takes no env parameter, and
+ * widening that contract for one caller would be a larger change than the
+ * problem deserves.
+ */
+export declare const AGENT_GIT_IDENTITY_FLAGS = "-c user.name='Stigmer Agent' -c user.email='noreply@stigmer.ai'";
+/**
+ * Build a `git commit` command that is always authored by the agent identity,
+ * regardless of what identity (if any) the surrounding environment provides.
+ */
+export declare function gitCommitAsAgent(commitMsg: string): string;

package/dist/shared/workspace/git-identity.js

@@ -0,0 +1,39 @@
+/**
+ * The public git identity for commits the agent authors on the user's behalf.
+ *
+ * Write-back commits (branch/commit/push/PR — see WriteBackCoordinator) land
+ * on real branches in the user's repository, so they carry a dedicated,
+ * recognizable agent identity in every mode — local and cloud alike. This is
+ * deliberate: a commit authored by the agent should never be silently
+ * attributed to whatever identity happens to live in the host's `~/.gitconfig`
+ * (local), and the cloud sandbox has no identity at all, which makes a bare
+ * `git commit` fail with "Author identity unknown".
+ *
+ * Distinct from the *internal* snapshot identity in
+ * `../filereview/git-substrate.ts` (`stigmer-runner <runner@stigmer.local>`):
+ * those commit objects are never on a branch and never pushed — they exist
+ * only to pin trees against GC. This identity is the public-facing one that
+ * appears in `git log`, on GitHub, and in pull requests.
+ */
+export const AGENT_GIT_AUTHOR_NAME = "Stigmer Agent";
+export const AGENT_GIT_AUTHOR_EMAIL = "noreply@stigmer.ai";
+/**
+ * `git -c` config flags that pin the agent identity for a single command.
+ *
+ * Per-command `-c` flags (rather than repo-local or global `git config`) keep
+ * the identity deterministic in every environment without mutating the user's
+ * repository config — the same never-mutate reasoning documented on
+ * `SNAPSHOT_IDENTITY_ENV` in `git-substrate.ts`. Env-var injection is not an
+ * option here: `WorkspaceBackend.execute()` takes no env parameter, and
+ * widening that contract for one caller would be a larger change than the
+ * problem deserves.
+ */
+export const AGENT_GIT_IDENTITY_FLAGS = `-c user.name='${AGENT_GIT_AUTHOR_NAME}' -c user.email='${AGENT_GIT_AUTHOR_EMAIL}'`;
+/**
+ * Build a `git commit` command that is always authored by the agent identity,
+ * regardless of what identity (if any) the surrounding environment provides.
+ */
+export function gitCommitAsAgent(commitMsg) {
+    return `git ${AGENT_GIT_IDENTITY_FLAGS} commit -m "${commitMsg}"`;
+}
+//# sourceMappingURL=git-identity.js.map

package/dist/shared/workspace/git-identity.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"git-identity.js","sourceRoot":"","sources":["../../../src/shared/workspace/git-identity.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;GAgBG;AACH,MAAM,CAAC,MAAM,qBAAqB,GAAG,eAAe,CAAC;AACrD,MAAM,CAAC,MAAM,sBAAsB,GAAG,oBAAoB,CAAC;AAE3D;;;;;;;;;;GAUG;AACH,MAAM,CAAC,MAAM,wBAAwB,GACnC,iBAAiB,qBAAqB,oBAAoB,sBAAsB,GAAG,CAAC;AAEtF;;;GAGG;AACH,MAAM,UAAU,gBAAgB,CAAC,SAAiB;IAChD,OAAO,OAAO,wBAAwB,eAAe,SAAS,GAAG,CAAC;AACpE,CAAC"}

package/dist/shared/workspace/local-backend.d.ts

@@ -6,8 +6,12 @@
  * sandbox) backend will be added in Phase 3.
  *
  * When `platformDir` is provided, paths under `.stigmer/` are
- * transparently routed to the platform directory. The agent sees a
- * unified namespace; the workspace directory is never polluted.
+ * transparently routed to the platform directory, keeping platform files
+ * out of the workspace tree. This routing serves the RUNNER's own I/O
+ * (skill/attachment materialization, `execute` command rewriting) — the
+ * agent's file tools do not go through this backend. Agent-visible reads
+ * of `.stigmer/…` reach the same physical files through the per-turn
+ * workspace symlink instead (see shared/workspace/stigmer-link.ts).
  */
 import type { WorkspaceBackend } from "./types.js";
 export declare class LocalWorkspaceBackend implements WorkspaceBackend {

package/dist/shared/workspace/local-backend.js

@@ -6,8 +6,12 @@
  * sandbox) backend will be added in Phase 3.
  *
  * When `platformDir` is provided, paths under `.stigmer/` are
- * transparently routed to the platform directory. The agent sees a
- * unified namespace; the workspace directory is never polluted.
+ * transparently routed to the platform directory, keeping platform files
+ * out of the workspace tree. This routing serves the RUNNER's own I/O
+ * (skill/attachment materialization, `execute` command rewriting) — the
+ * agent's file tools do not go through this backend. Agent-visible reads
+ * of `.stigmer/…` reach the same physical files through the per-turn
+ * workspace symlink instead (see shared/workspace/stigmer-link.ts).
  */
 import { execFile } from "node:child_process";
 import { readFile, writeFile, access, mkdir } from "node:fs/promises";

package/dist/shared/workspace/local-backend.js.map

@@ -1 +1 @@
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package/dist/shared/workspace/stigmer-link.d.ts

@@ -0,0 +1,54 @@
+/**
+ * The workspace `.stigmer` symlink — the bridge from the session's workspace
+ * to its platform-managed directory (~/.stigmer/sessions/{id}/platform/, see
+ * platform-dir.ts), shared by BOTH harnesses.
+ *
+ * Platform-injected content (skills, attachment inputs, the approved plan)
+ * physically lives in the platform dir, outside the workspace, so a real repo
+ * is never polluted with Stigmer files (issue #173). But the agent reads from
+ * the workspace: the Cursor SDK resolves paths against the workspace CWD, and
+ * the native (deepagents) harness's file tools resolve against a
+ * `FilesystemBackend` rooted at the workspace. The symlink is what makes the
+ * `.stigmer/…` paths those agents are prompted with (skill locations,
+ * `.stigmer/inputs/…` attachments) actually resolve.
+ *
+ * Lifecycle contract (same for both harnesses):
+ * - Created per turn, under the workspace turn lock — the link is a
+ *   working-tree mutation, and re-pointing it while another session's turn is
+ *   running on a shared tree would redirect that turn's reads mid-flight.
+ *   Cursor creates it in its skill/attachment resolvers (which run after lock
+ *   acquisition); the native harness creates it right after acquiring the
+ *   lock (execute-deep-agent/index.ts).
+ * - Removed at turn end ({@link removeStigmerSymlink} in the activity's
+ *   cleanup), so a real repo is left untouched once the turn ends; a
+ *   multi-turn session recreates the link on the next turn.
+ * - {@link ensureStigmerSymlink} is idempotent, so multiple populaters may
+ *   run in any order within a turn.
+ *
+ * OWNERSHIP SHARP EDGE: the platform owns the `.stigmer` name inside a
+ * workspace. {@link ensureStigmerSymlink} REPLACES a real (non-symlink)
+ * `.stigmer` directory it finds there — deliberate, so a directory left
+ * behind by an older runner can never shadow the platform mount. (A user's
+ * own `.stigmer` content is unreachable anyway: the runner's
+ * `LocalWorkspaceBackend` routes every `.stigmer/…` path to the platform
+ * dir.) Turn-end removal is the conservative half: it only ever removes a
+ * SYMLINK.
+ */
+/** The workspace-visible name of the platform namespace. */
+export declare const STIGMER_LOCAL_STATE_DIR = ".stigmer";
+/**
+ * Ensure the workspace `.stigmer` symlink points to the platform dir.
+ * Idempotent: an existing correct link is kept; a stale link (or a non-link
+ * left behind by an older runner) is replaced.
+ */
+export declare function ensureStigmerSymlink(workspaceDir: string, platformDir: string): Promise<void>;
+/**
+ * Remove the workspace `.stigmer` symlink created by
+ * {@link ensureStigmerSymlink}.
+ *
+ * Called in the activity's cleanup so attaching a real repo leaves no Stigmer
+ * symlink behind once the turn ends (issue #173). Only ever removes a
+ * SYMLINK — a real `.stigmer` directory (which would be the user's own, not
+ * ours) is left untouched. Best-effort.
+ */
+export declare function removeStigmerSymlink(workspaceDir: string): Promise<void>;

package/dist/shared/workspace/stigmer-link.js

@@ -0,0 +1,92 @@
+/**
+ * The workspace `.stigmer` symlink — the bridge from the session's workspace
+ * to its platform-managed directory (~/.stigmer/sessions/{id}/platform/, see
+ * platform-dir.ts), shared by BOTH harnesses.
+ *
+ * Platform-injected content (skills, attachment inputs, the approved plan)
+ * physically lives in the platform dir, outside the workspace, so a real repo
+ * is never polluted with Stigmer files (issue #173). But the agent reads from
+ * the workspace: the Cursor SDK resolves paths against the workspace CWD, and
+ * the native (deepagents) harness's file tools resolve against a
+ * `FilesystemBackend` rooted at the workspace. The symlink is what makes the
+ * `.stigmer/…` paths those agents are prompted with (skill locations,
+ * `.stigmer/inputs/…` attachments) actually resolve.
+ *
+ * Lifecycle contract (same for both harnesses):
+ * - Created per turn, under the workspace turn lock — the link is a
+ *   working-tree mutation, and re-pointing it while another session's turn is
+ *   running on a shared tree would redirect that turn's reads mid-flight.
+ *   Cursor creates it in its skill/attachment resolvers (which run after lock
+ *   acquisition); the native harness creates it right after acquiring the
+ *   lock (execute-deep-agent/index.ts).
+ * - Removed at turn end ({@link removeStigmerSymlink} in the activity's
+ *   cleanup), so a real repo is left untouched once the turn ends; a
+ *   multi-turn session recreates the link on the next turn.
+ * - {@link ensureStigmerSymlink} is idempotent, so multiple populaters may
+ *   run in any order within a turn.
+ *
+ * OWNERSHIP SHARP EDGE: the platform owns the `.stigmer` name inside a
+ * workspace. {@link ensureStigmerSymlink} REPLACES a real (non-symlink)
+ * `.stigmer` directory it finds there — deliberate, so a directory left
+ * behind by an older runner can never shadow the platform mount. (A user's
+ * own `.stigmer` content is unreachable anyway: the runner's
+ * `LocalWorkspaceBackend` routes every `.stigmer/…` path to the platform
+ * dir.) Turn-end removal is the conservative half: it only ever removes a
+ * SYMLINK.
+ */
+import { symlink, readlink, unlink, rm, lstat } from "node:fs/promises";
+import { join } from "node:path";
+/** The workspace-visible name of the platform namespace. */
+export const STIGMER_LOCAL_STATE_DIR = ".stigmer";
+/**
+ * Ensure the workspace `.stigmer` symlink points to the platform dir.
+ * Idempotent: an existing correct link is kept; a stale link (or a non-link
+ * left behind by an older runner) is replaced.
+ */
+export async function ensureStigmerSymlink(workspaceDir, platformDir) {
+    const linkPath = join(workspaceDir, STIGMER_LOCAL_STATE_DIR);
+    try {
+        const existing = await readlink(linkPath);
+        if (existing === platformDir)
+            return;
+        await unlink(linkPath);
+    }
+    catch (err) {
+        if (err.code === "ENOENT") {
+            // No existing symlink
+        }
+        else if (err.code === "EINVAL") {
+            // Exists but is not a symlink — remove the directory
+            await rm(linkPath, { recursive: true, force: true });
+        }
+        else {
+            throw err;
+        }
+    }
+    await symlink(platformDir, linkPath, "dir");
+}
+/**
+ * Remove the workspace `.stigmer` symlink created by
+ * {@link ensureStigmerSymlink}.
+ *
+ * Called in the activity's cleanup so attaching a real repo leaves no Stigmer
+ * symlink behind once the turn ends (issue #173). Only ever removes a
+ * SYMLINK — a real `.stigmer` directory (which would be the user's own, not
+ * ours) is left untouched. Best-effort.
+ */
+export async function removeStigmerSymlink(workspaceDir) {
+    const linkPath = join(workspaceDir, STIGMER_LOCAL_STATE_DIR);
+    try {
+        const stat = await lstat(linkPath);
+        if (stat.isSymbolicLink()) {
+            await unlink(linkPath);
+        }
+    }
+    catch (err) {
+        if (err?.code !== "ENOENT") {
+            console.warn(`removeStigmerSymlink: failed to remove ${linkPath} (non-fatal): ` +
+                `${err instanceof Error ? err.message : err}`);
+        }
+    }
+}
+//# sourceMappingURL=stigmer-link.js.map

package/dist/shared/workspace/stigmer-link.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"stigmer-link.js","sourceRoot":"","sources":["../../../src/shared/workspace/stigmer-link.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAmCG;AAEH,OAAO,EAAE,OAAO,EAAE,QAAQ,EAAE,MAAM,EAAE,EAAE,EAAE,KAAK,EAAE,MAAM,kBAAkB,CAAC;AACxE,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AAEjC,4DAA4D;AAC5D,MAAM,CAAC,MAAM,uBAAuB,GAAG,UAAU,CAAC;AAElD;;;;GAIG;AACH,MAAM,CAAC,KAAK,UAAU,oBAAoB,CACxC,YAAoB,EACpB,WAAmB;IAEnB,MAAM,QAAQ,GAAG,IAAI,CAAC,YAAY,EAAE,uBAAuB,CAAC,CAAC;IAE7D,IAAI,CAAC;QACH,MAAM,QAAQ,GAAG,MAAM,QAAQ,CAAC,QAAQ,CAAC,CAAC;QAC1C,IAAI,QAAQ,KAAK,WAAW;YAAE,OAAO;QACrC,MAAM,MAAM,CAAC,QAAQ,CAAC,CAAC;IACzB,CAAC;IAAC,OAAO,GAAQ,EAAE,CAAC;QAClB,IAAI,GAAG,CAAC,IAAI,KAAK,QAAQ,EAAE,CAAC;YAC1B,sBAAsB;QACxB,CAAC;aAAM,IAAI,GAAG,CAAC,IAAI,KAAK,QAAQ,EAAE,CAAC;YACjC,qDAAqD;YACrD,MAAM,EAAE,CAAC,QAAQ,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC,CAAC;QACvD,CAAC;aAAM,CAAC;YACN,MAAM,GAAG,CAAC;QACZ,CAAC;IACH,CAAC;IAED,MAAM,OAAO,CAAC,WAAW,EAAE,QAAQ,EAAE,KAAK,CAAC,CAAC;AAC9C,CAAC;AAED;;;;;;;;GAQG;AACH,MAAM,CAAC,KAAK,UAAU,oBAAoB,CAAC,YAAoB;IAC7D,MAAM,QAAQ,GAAG,IAAI,CAAC,YAAY,EAAE,uBAAuB,CAAC,CAAC;IAC7D,IAAI,CAAC;QACH,MAAM,IAAI,GAAG,MAAM,KAAK,CAAC,QAAQ,CAAC,CAAC;QACnC,IAAI,IAAI,CAAC,cAAc,EAAE,EAAE,CAAC;YAC1B,MAAM,MAAM,CAAC,QAAQ,CAAC,CAAC;QACzB,CAAC;IACH,CAAC;IAAC,OAAO,GAAQ,EAAE,CAAC;QAClB,IAAI,GAAG,EAAE,IAAI,KAAK,QAAQ,EAAE,CAAC;YAC3B,OAAO,CAAC,IAAI,CACV,0CAA0C,QAAQ,gBAAgB;gBAClE,GAAG,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,GAAG,EAAE,CAC9C,CAAC;QACJ,CAAC;IACH,CAAC;AACH,CAAC"}

package/dist/shared/workspace/types.d.ts

@@ -40,10 +40,12 @@ export declare class WorkspaceProvisionError extends Error {
  * commands route through the Daytona sandbox proxy.
  *
  * When `platformDir` is set, paths under `.stigmer/` are transparently
- * routed to the platform directory instead of the workspace root. This
- * keeps platform files (skills, inputs) physically separate from the
- * user's workspace while presenting a unified `.stigmer/` namespace to
- * the agent.
+ * routed to the platform directory instead of the workspace root, keeping
+ * platform files (skills, inputs) physically separate from the user's
+ * workspace. The routing covers the RUNNER's own reads/writes through
+ * this interface; the agent's file tools resolve against the workspace
+ * root and see the same files through the per-turn `.stigmer` symlink
+ * (see stigmer-link.ts).
  */
 export interface WorkspaceBackend {
     readonly rootDir: string;

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@stigmer/runner",
-  "version": "3.1.4",
+  "version": "3.1.5",
   "description": "Embeddable Temporal worker for the Stigmer AI agent platform — handles agent execution, workflow orchestration, and MCP server management",
   "license": "Apache-2.0",
   "type": "module",
@@ -85,7 +85,7 @@
     "@opentelemetry/sdk-metrics": "^2.0.0",
     "@opentelemetry/sdk-trace-base": "^2.0.0",
     "@opentelemetry/sdk-trace-node": "^2.0.0",
-    "@stigmer/protos": "3.1.4",
+    "@stigmer/protos": "3.1.5",
     "@temporalio/activity": "^1.11.0",
     "@temporalio/client": "^1.11.0",
     "@temporalio/common": "^1.11.0",

package/src/activities/execute-cursor/attachment-resolver.ts

@@ -34,7 +34,7 @@ import { join, basename } from "node:path";
 import type { Attachment } from "@stigmer/protos/ai/stigmer/agentic/agentexecution/v1/spec_pb";
 import type { ArtifactStorage } from "../../shared/artifact-storage.js";
 import { getPlatformDir } from "../../shared/workspace/platform-dir.js";
-import { ensureStigmerSymlink, STIGMER_LOCAL_STATE_DIR } from "./stigmer-link.js";
+import { ensureStigmerSymlink, STIGMER_LOCAL_STATE_DIR } from "../../shared/workspace/stigmer-link.js";
 
 const INPUTS_SUBDIR = "inputs";
 

package/src/activities/execute-cursor/index.ts

@@ -61,7 +61,7 @@ import { resolveExecutionEnv } from "./env-resolver.js";
 import { resolveBlueprint } from "./blueprint-resolver.js";
 import { buildCursorSubAgentDefinitions } from "./subagent-config.js";
 import { resolveSkills } from "./skill-resolver.js";
-import { removeStigmerSymlink } from "./stigmer-link.js";
+import { removeStigmerSymlink } from "../../shared/workspace/stigmer-link.js";
 import { resolveAttachments } from "./attachment-resolver.js";
 import { buildEnhancedPrompt, buildReinvocationPrompt, formatInteractionModePrefix, formatImplementPlanSection } from "./prompt-builder.js";
 import { installHitlGate, removeHitlGate } from "./workspace-setup.js";

package/src/activities/execute-cursor/skill-resolver.ts

@@ -17,7 +17,7 @@ import type { ApiResourceReference } from "@stigmer/protos/ai/stigmer/commons/ap
 import type { SkillMetadata } from "./prompt-builder.js";
 import { getPlatformDir } from "../../shared/workspace/platform-dir.js";
 import { extractZipFileEntries } from "../../shared/zip-extract.js";
-import { ensureStigmerSymlink, STIGMER_LOCAL_STATE_DIR } from "./stigmer-link.js";
+import { ensureStigmerSymlink, STIGMER_LOCAL_STATE_DIR } from "../../shared/workspace/stigmer-link.js";
 
 const SKILLS_SUBDIR = "skills";
 

package/src/activities/execute-deep-agent/__tests__/writeback-coordinator.test.ts

@@ -11,6 +11,10 @@ import {
 } from "../writeback-coordinator.js";
 import type { WorkspaceBackend, ProvisionResult } from "../../../shared/workspace/types.js";
 import { SourceType } from "../../../shared/workspace/types.js";
+import {
+  AGENT_GIT_AUTHOR_NAME,
+  AGENT_GIT_AUTHOR_EMAIL,
+} from "../../../shared/workspace/git-identity.js";
 
 function makeStatusBuilder(): StatusBuilder {
   return new StatusBuilder("exec-wb-test", create(AgentExecutionStatusSchema, {}));
@@ -53,7 +57,7 @@ function mockWorkspaceBackend(responses: Record<string, string> = {}): Workspace
     "git ls-files --others --exclude-standard": "",
     "git checkout -b": "",
     "git add -A": "",
-    "git commit -m": "",
+    "commit -m": "",
     "git rev-parse HEAD": "abc123def456",
     "git push -u origin": "",
     "git push": "",
@@ -163,10 +167,33 @@ describe("WriteBackCoordinator", () => {
     const commands = executeCalls.map((c: any) => c[0] as string);
     expect(commands.some((c: string) => c.includes("git checkout -b stigmer/exec-123"))).toBe(true);
     expect(commands.some((c: string) => c.includes("git add -A"))).toBe(true);
-    expect(commands.some((c: string) => c.includes("git commit"))).toBe(true);
+    expect(commands.some((c: string) => c.includes("commit -m"))).toBe(true);
     expect(commands.some((c: string) => c.includes("git push -u origin"))).toBe(true);
   });
 
+  it("commits with the agent identity pinned via -c flags", async () => {
+    const backend = mockWorkspaceBackend();
+    const coord = new WriteBackCoordinator({
+      statusWriter: sb,
+      executionId: "exec-12345678rest",
+      provisionResults: [makeProvisionResult()],
+      workspaceEntries: [makeWorkspaceEntry("my-app")],
+      workspaceBackend: backend,
+    });
+
+    await coord.onFileModified("src/main.ts");
+
+    const executeCalls = (backend.execute as ReturnType<typeof vi.fn>).mock.calls;
+    const commands = executeCalls.map((c: any) => c[0] as string);
+    const commitCommand = commands.find((c: string) => c.includes("git") && c.includes("commit -m"));
+    expect(commitCommand,
+      "commit must not depend on ambient git identity — the cloud sandbox has none",
+    ).toBeDefined();
+    expect(commitCommand).toContain(`-c user.name='${AGENT_GIT_AUTHOR_NAME}'`);
+    expect(commitCommand).toContain(`-c user.email='${AGENT_GIT_AUTHOR_EMAIL}'`);
+    expect(commitCommand).toContain('commit -m "agent changes (1)"');
+  });
+
   it("skips when there are no changes", async () => {
     const backend = mockWorkspaceBackend({
       "git diff --stat": "",
@@ -218,7 +245,7 @@ describe("WriteBackCoordinator", () => {
       if (cmd.includes("git diff --cached")) return "";
       if (cmd.includes("git checkout -b")) return "";
       if (cmd.includes("git add")) return "";
-      if (cmd.includes("git commit")) throw new Error("commit failed: lock");
+      if (cmd.includes("commit -m")) throw new Error("commit failed: lock");
       return "";
     });
 

package/src/activities/execute-deep-agent/index.ts

@@ -26,6 +26,10 @@ import {
   WorkspaceLockTimeoutError,
   type ReleaseWorkspaceLock,
 } from "../../shared/workspace/workspace-lock.js";
+import {
+  ensureStigmerSymlink,
+  removeStigmerSymlink,
+} from "../../shared/workspace/stigmer-link.js";
 import type { ToolOutputOffloadContext } from "../../shared/status-offload.js";
 import { publishPlanArtifact } from "../../shared/plan-artifact.js";
 import { classifyTool } from "../../shared/tool-kind.js";
@@ -229,6 +233,22 @@ export function createDeepAgentActivities(config: Config) {
           throw lockErr;
         }
 
+        // Bridge the workspace to the session's platform dir so the agent's
+        // file tools can read platform-mounted content (`.stigmer/inputs/…`
+        // attachments incl. the approved plan, `.stigmer/skills/…`) — the
+        // deepagents FilesystemBackend resolves paths against the workspace
+        // root and knows nothing of the LocalWorkspaceBackend's `.stigmer`
+        // routing. Two ordering invariants (see shared/workspace/stigmer-link.ts):
+        //  - AFTER the lock: the link is a tree mutation; sessions sharing one
+        //    attached directory must not re-point it under a running turn.
+        //  - BEFORE the baseline capture below: present in both the baseline
+        //    and candidate trees, the link cancels out of the file-review diff
+        //    even when the workspace's git excludes do not list `.stigmer`.
+        // Removed in cleanup() (the finally below), before the lock releases.
+        if (setup.workspaceBackend.platformDir) {
+          await ensureStigmerSymlink(gitRoot, setup.workspaceBackend.platformDir);
+        }
+
         // (1) Capture-mode resume — reconcile any DECIDED change set FIRST (this
         // drops the per-execution refs), before the next baseline re-pins them
         // (refs are executionId-keyed). Then (2) short-circuit a pure file-review
@@ -315,8 +335,10 @@ export function createDeepAgentActivities(config: Config) {
         }
 
         // Turn start (capture mode): pin the pre-turn tree + author BASELINE. Taken
-        // AFTER any reconcile above and AFTER performSetup's workspace writes, so
-        // the baseline absorbs the reconciled state and the runner-owned files.
+        // AFTER any reconcile above and AFTER performSetup's workspace writes and
+        // the `.stigmer` symlink above, so the baseline absorbs the reconciled
+        // state and the runner-owned files (the symlink then cancels out of the
+        // baseline→candidate diff).
         let captureBaselineTree = "";
         // Snapshot the sub-agent tool-call ids that exist BEFORE this turn's
         // stream, so the turn-boundary stamp scopes itself to sub-agent rows
@@ -398,9 +420,11 @@ export function createDeepAgentActivities(config: Config) {
           // Mid-run live capture (DD-32 / DD-33): attach file_change_progress
           // before each scheduled persist, throttled by the floor inside
           // captureFileChangeProgress. The substrate (git / non-git CAS / hybrid)
-          // was chosen for this turn above; deep-agent writes no runner-owned gate
-          // files into the tree, so the git slice needs no excludePaths — matching
-          // its turn-boundary candidate capture.
+          // was chosen for this turn above; the deep-agent's only runner-owned
+          // tree entry is the `.stigmer` symlink, created before the baseline
+          // so it appears identically in every capture and cancels out of the
+          // diff — the git slice therefore needs no excludePaths, matching its
+          // turn-boundary candidate capture.
           beforePersist: async (status) => {
             if (!progressSubstrate) return;
             await captureFileChangeProgress({
@@ -928,5 +952,12 @@ async function cleanup(setup: SetupResult | null): Promise<void> {
       console.warn("[ExecuteDeepAgent] MCP connection cleanup failed:", err);
     }
   }
+
+  // Drop the workspace→platform `.stigmer` symlink so an attached repo is
+  // left untouched between turns (issue #173 semantics; a multi-turn session
+  // recreates it next turn). Runs in the activity finally, BEFORE the
+  // workspace lock releases, so the next queued turn baselines a clean tree.
+  // Best-effort and symlink-only: a real `.stigmer` directory is never removed.
+  await removeStigmerSymlink(setup.workspaceBackend.rootDir);
 }
 

package/src/activities/execute-deep-agent/writeback-coordinator.ts

@@ -27,6 +27,7 @@ import { GitWriteBackMode } from "@stigmer/protos/ai/stigmer/agentic/session/v1/
 import type { WorkspaceEntry } from "@stigmer/protos/ai/stigmer/agentic/session/v1/workspace_pb";
 import type { WorkspaceBackend, ProvisionResult } from "../../shared/workspace/types.js";
 import { SourceType } from "../../shared/workspace/types.js";
+import { gitCommitAsAgent } from "../../shared/workspace/git-identity.js";
 import type { ExecutionStatusWriter } from "./execution-status-writer.js";
 
 const WRITE_BACK_ENABLED_MODES = new Set([
@@ -273,7 +274,10 @@ export class WriteBackCoordinator {
     commitMsg: string,
   ): Promise<void> {
     await exec("git add -A");
-    await exec(`git commit -m "${commitMsg}"`);
+    // Committed as the agent identity: the cloud sandbox has no git identity
+    // configured (a bare commit fails with "Author identity unknown"), and in
+    // local mode the agent's work should not be attributed to the host user.
+    await exec(gitCommitAsAgent(commitMsg));
 
     entryState.commitCount++;
     const shaOutput = await exec("git rev-parse HEAD");

package/src/shared/filereview/git-substrate.ts

@@ -97,6 +97,10 @@ export function captureRef(executionId: string): string {
  * garbage collection — but `git commit-tree` still requires an author/committer,
  * and the repo may have no user.name/email configured. Supplied via env so we
  * never mutate the repo's config.
+ *
+ * Deliberately distinct from the public agent identity in
+ * `../workspace/git-identity.ts`, which authors the write-back commits that
+ * land on real branches and pull requests.
  */
 const SNAPSHOT_IDENTITY_ENV: Record<string, string> = {
   GIT_AUTHOR_NAME: "stigmer-runner",