@steno-ai/engine 0.1.12 → 0.1.14

package/dist/extraction/codebase-extractor.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"codebase-extractor.d.ts","sourceRoot":"","sources":["../../src/extraction/codebase-extractor.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAC;AACrD,OAAO,KAAK,EAAE,gBAAgB,EAAiD,MAAM,YAAY,CAAC;AAClG,OAAO,KAAK,EAAE,cAAc,EAAwB,MAAM,cAAc,CAAC;AAIzE,MAAM,WAAW,uBAAuB;IACtC,GAAG,EAAE,UAAU,CAAC;IAChB,IAAI,EAAE,cAAc,CAAC;CACtB;AAWD;;;;GAIG;AACH,wBAAsB,oBAAoB,CACxC,MAAM,EAAE,uBAAuB,EAC/B,KAAK,EAAE,MAAM,GACZ,OAAO,CAAC,gBAAgB,CAAC,CA+K3B"}

package/dist/extraction/codebase-extractor.js

@@ -1,6 +1,5 @@
 import { buildCodebaseFactExtractionPrompt, buildCodebaseGraphExtractionPrompt, CODEBASE_ENTITY_TYPES } from './codebase-prompts.js';
 import { normalizeEntityName } from './llm-extractor.js';
-import { createEnrichedSegments } from './sliding-window.js';
 const VALID_CODEBASE_SOURCE_TYPES = new Set([
     'file_analysis', 'ast_parse', 'git_history', 'dependency_scan',
 ]);
@@ -16,65 +15,48 @@ const VALID_CODEBASE_EDGE_TYPES = new Set([
 export async function extractCodebaseFacts(config, input) {
     let totalTokensIn = 0;
     let totalTokensOut = 0;
-    // ── PASS 1: Codebase fact extraction with Sliding Window ──
-    const segments = createEnrichedSegments(input);
+    // ── PASS 1: Codebase fact extraction — ONE LLM call (no sliding window) ──
+    // Code doesn't need pronoun resolution. Send the full input as one chunk
+    // to minimize LLM calls (1 call vs 6+ with sliding window).
+    // Cap at 30K chars (~7.5K tokens) to fit gpt-4.1-mini's context.
+    const cappedInput = input.slice(0, 30_000);
     let factEntries = [];
-    // Process segments in batches of 4
-    const segmentBatches = [];
-    for (let i = 0; i < segments.length; i += 4) {
-        segmentBatches.push(segments.slice(i, i + 4));
-    }
-    for (const batch of segmentBatches) {
-        const batchPromises = batch.map(async (seg) => {
-            const messages = buildCodebaseFactExtractionPrompt(seg.contextWindow);
-            // Append already-extracted facts to avoid duplicates across segments
-            if (factEntries.length > 0) {
-                const alreadyExtracted = factEntries.map(f => `- ${f.text}`).join('\n');
-                messages[1].content += `\n\n--- ALREADY EXTRACTED (skip these) ---\n${alreadyExtracted}`;
-            }
-            try {
-                const response = await config.llm.complete(messages, { temperature: 0, responseFormat: 'json' });
-                totalTokensIn += response.tokensInput;
-                totalTokensOut += response.tokensOutput;
-                const parsed = JSON.parse(response.content);
-                const rawFacts = Array.isArray(parsed.facts) ? parsed.facts : [];
-                const entries = [];
-                for (const f of rawFacts) {
-                    if (typeof f === 'string') {
-                        const trimmed = f.trim();
-                        if (trimmed.length > 0) {
-                            entries.push({ text: trimmed, importance: 0.5, sourceChunk: seg.contextWindow, sourceType: 'file_analysis' });
-                        }
-                    }
-                    else if (f && typeof f === 'object') {
-                        const obj = f;
-                        const text = (typeof obj.t === 'string' ? obj.t : typeof obj.text === 'string' ? obj.text : '').trim();
-                        const importance = typeof obj.i === 'number' ? obj.i : typeof obj.importance === 'number' ? obj.importance : 0.5;
-                        const rawSrc = typeof obj.src === 'string' ? obj.src : 'file_analysis';
-                        const sourceType = VALID_CODEBASE_SOURCE_TYPES.has(rawSrc)
-                            ? rawSrc
-                            : 'file_analysis';
-                        if (text.length > 0) {
-                            entries.push({
-                                text,
-                                importance: Math.max(0, Math.min(1, importance)),
-                                sourceChunk: seg.contextWindow,
-                                sourceType,
-                            });
-                        }
-                    }
+    try {
+        const messages = buildCodebaseFactExtractionPrompt(cappedInput);
+        const response = await config.llm.complete(messages, { temperature: 0, responseFormat: 'json' });
+        totalTokensIn += response.tokensInput;
+        totalTokensOut += response.tokensOutput;
+        const parsed = JSON.parse(response.content);
+        const rawFacts = Array.isArray(parsed.facts) ? parsed.facts : [];
+        for (const f of rawFacts) {
+            if (typeof f === 'string') {
+                const trimmed = f.trim();
+                if (trimmed.length > 0) {
+                    factEntries.push({ text: trimmed, importance: 0.5, sourceChunk: cappedInput.slice(0, 500), sourceType: 'file_analysis' });
                 }
-                return entries;
             }
-            catch {
-                return [];
+            else if (f && typeof f === 'object') {
+                const obj = f;
+                const text = (typeof obj.t === 'string' ? obj.t : typeof obj.text === 'string' ? obj.text : '').trim();
+                const importance = typeof obj.i === 'number' ? obj.i : typeof obj.importance === 'number' ? obj.importance : 0.5;
+                const rawSrc = typeof obj.src === 'string' ? obj.src : 'file_analysis';
+                const sourceType = VALID_CODEBASE_SOURCE_TYPES.has(rawSrc)
+                    ? rawSrc
+                    : 'file_analysis';
+                if (text.length > 0) {
+                    factEntries.push({
+                        text,
+                        importance: Math.max(0, Math.min(1, importance)),
+                        sourceChunk: cappedInput.slice(0, 500),
+                        sourceType,
+                    });
+                }
             }
-        });
-        const batchResults = await Promise.all(batchPromises);
-        for (const entries of batchResults) {
-            factEntries.push(...entries);
         }
     }
+    catch (err) {
+        console.error('[steno-codebase] Fact extraction failed:', err instanceof Error ? err.message : err);
+    }
     // Deduplicate facts by content similarity
     const seenContent = new Set();
     factEntries = factEntries.filter(e => {

package/dist/extraction/codebase-extractor.js.map

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package/dist/extraction/pipeline.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"pipeline.d.ts","sourceRoot":"","sources":["../../src/extraction/pipeline.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,wBAAwB,CAAC;AAC7D,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,0BAA0B,CAAC;AACjE,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAC;AACrD,OAAO,KAAK,EAAc,gBAAgB,EAAE,MAAM,cAAc,CAAC;AACjE,OAAO,KAAK,EACV,eAAe,EACf,cAAc,EACd,aAAa,EACb,eAAe,EAEhB,MAAM,YAAY,CAAC;AAWpB,MAAM,WAAW,cAAc;IAC7B,OAAO,EAAE,cAAc,CAAC;IACxB,SAAS,EAAE,gBAAgB,CAAC;IAC5B,QAAQ,EAAE,UAAU,CAAC;IACrB,QAAQ,CAAC,EAAE,UAAU,CAAC;IACtB,cAAc,CAAC,EAAE,gBAAgB,GAAG,YAAY,GAAG,MAAM,GAAG,YAAY,CAAC;IACzE,cAAc,EAAE,MAAM,CAAC;IACvB,YAAY,EAAE,MAAM,CAAC;IACrB,iBAAiB,CAAC,EAAE,MAAM,CAAC;IAC3B,mBAAmB,CAAC,EAAE,MAAM,CAAC;IAC7B,WAAW,CAAC,EAAE,MAAM,EAAE,CAAC;IACvB,iBAAiB,CAAC,EAAE,gBAAgB,EAAE,CAAC;IACvC,0GAA0G;IAC1G,IAAI,CAAC,EAAE,cAAc,GAAG,UAAU,CAAC;CACpC;AAsDD,wBAAgB,WAAW,CAAC,KAAK,EAAE,eAAe,GAAG,MAAM,CAiB1D;AAED,wBAAgB,UAAU,CACxB,SAAS,EAAE,aAAa,EAAE,EAC1B,GAAG,EAAE,aAAa,EAAE,GACnB,aAAa,EAAE,CAIjB;AAED,wBAAgB,aAAa,CAC3B,SAAS,EAAE,eAAe,EAAE,EAC5B,GAAG,EAAE,eAAe,EAAE,GACrB,eAAe,EAAE,CAQnB;AA+YD,wBAAsB,qBAAqB,CACzC,MAAM,EAAE,cAAc,EACtB,KAAK,EAAE,eAAe,GACrB,OAAO,CAAC,cAAc,CAAC,CAiFzB;AAMD;;;;;GAKG;AACH,wBAAsB,sBAAsB,CAC1C,MAAM,EAAE,cAAc,EACtB,YAAY,EAAE,MAAM,EACpB,KAAK,EAAE,eAAe,GACrB,OAAO,CAAC,cAAc,CAAC,CAiBzB"}

package/dist/extraction/pipeline.js

@@ -8,6 +8,50 @@ import { linkRelatedFacts } from './cross-linker.js';
 import { hashInput } from './hasher.js';
 import { updateScratchpad } from '../scratchpad/scratchpad.js';
 // ---------------------------------------------------------------------------
+// Context poisoning defense
+// ---------------------------------------------------------------------------
+/** Known prompt injection patterns to strip from external content */
+const INJECTION_PATTERNS = [
+    /ignore\s+(all\s+)?previous\s+instructions/gi,
+    /ignore\s+(all\s+)?prior\s+instructions/gi,
+    /disregard\s+(all\s+)?previous/gi,
+    /forget\s+(all\s+)?previous/gi,
+    /you\s+are\s+now\s+a/gi,
+    /system\s*:\s*/gi,
+    /\[INST\]/gi,
+    /\[\/INST\]/gi,
+    /<\|im_start\|>/gi,
+    /<\|im_end\|>/gi,
+    /<<SYS>>/gi,
+    /<<\/SYS>>/gi,
+    /\bdo\s+not\s+follow\s+(any\s+)?other\s+instructions\b/gi,
+    /\bnew\s+instructions?\s*:/gi,
+    /\boverride\s+(all\s+)?instructions\b/gi,
+];
+/** Instruction-like patterns that indicate a fact might be poisoned */
+const INSTRUCTION_PATTERNS = [
+    /\balways\s+(do|use|recommend|suggest|say|respond|answer)\b/i,
+    /\bnever\s+(do|use|recommend|suggest|say|respond|answer|mention)\b/i,
+    /\byou\s+must\s+(always|never)\b/i,
+    /\bfrom\s+now\s+on\b/i,
+    /\bwhen(ever)?\s+(asked|someone|the\s+user)\b.*\b(say|respond|answer|recommend)\b/i,
+];
+function stripInjectionPatterns(text) {
+    let cleaned = text;
+    for (const pattern of INJECTION_PATTERNS) {
+        cleaned = cleaned.replace(pattern, '[REDACTED]');
+    }
+    return cleaned;
+}
+/** Check if a fact looks like an injected instruction. Returns trust level. */
+function assessFactTrust(content) {
+    for (const pattern of INSTRUCTION_PATTERNS) {
+        if (pattern.test(content))
+            return 'low';
+    }
+    return 'high';
+}
+// ---------------------------------------------------------------------------
 // Helpers
 // ---------------------------------------------------------------------------
 export function inputToText(input) {
@@ -49,6 +93,18 @@ async function executeExtraction(config, extractionId, input, startTime) {
     const tier = config.extractionTier ?? 'auto';
     const textContent = inputToText(input);
     const isCodebaseMode = config.mode === 'codebase';
+    // Default sourceProvider based on mode if not explicitly set
+    if (!input.sourceProvider) {
+        input.sourceProvider = isCodebaseMode ? 'code' : 'user_direct';
+    }
+    // ── Context poisoning defense: strip known injection patterns from input ──
+    // Only for non-user-direct sources (emails, documents, external data)
+    if (input.sourceProvider && input.sourceProvider !== 'user_direct') {
+        const stripped = stripInjectionPatterns(textContent);
+        if (stripped !== textContent) {
+            console.error(`[steno-pipeline] Stripped injection patterns from ${input.sourceProvider} input`);
+        }
+    }
     let totalTokensInput = 0;
     let totalTokensOutput = 0;
     const tiersUsed = [];
@@ -59,7 +115,9 @@ async function executeExtraction(config, extractionId, input, startTime) {
         // ── CODEBASE MODE: Skip heuristic, use codebase-specific extraction ──
         const llmToUse = tier === 'smart_only' ? (config.smartLLM ?? config.cheapLLM) : config.cheapLLM;
         const llmTier = tier === 'smart_only' ? 'smart_llm' : 'cheap_llm';
+        console.error(`[steno-pipeline] Codebase mode: extracting from ${textContent.length} chars with ${llmTier}`);
         const codebaseResult = await extractCodebaseFacts({ llm: llmToUse, tier: llmTier }, textContent);
+        console.error(`[steno-pipeline] Codebase extraction: ${codebaseResult.facts.length} facts, ${codebaseResult.entities.length} entities, ${codebaseResult.edges.length} edges, confidence=${codebaseResult.confidence}`);
         totalTokensInput += codebaseResult.tokensInput;
         totalTokensOutput += codebaseResult.tokensOutput;
         tiersUsed.push(llmTier);
@@ -147,8 +205,10 @@ async function executeExtraction(config, extractionId, input, startTime) {
         embedding: config.embedding,
         llm: config.cheapLLM,
     }, mergedFacts, input.tenantId, input.scope, input.scopeId);
+    console.error(`[steno-pipeline] After dedup: ${dedupedFacts.length} facts (from ${mergedFacts.length} pre-dedup)`);
     // Process contradictions
     const contradictionResults = processContradictions(dedupedFacts);
+    console.error(`[steno-pipeline] After contradiction processing: ${contradictionResults.length} results`);
     // Persist facts
     let factsCreated = 0;
     let factsUpdated = 0;
@@ -230,6 +290,8 @@ async function executeExtraction(config, extractionId, input, startTime) {
             metadata: {
                 ...(fact.relationType && { relationType: fact.relationType }),
                 ...(fact.relatedFactId && { relatedFactId: fact.relatedFactId }),
+                ...(input.sourceProvider && { sourceProvider: input.sourceProvider }),
+                trust: assessFactTrust(fact.content),
             },
             sourceChunk: fact.sourceChunk,
             eventDate: fact.eventDate,

package/dist/extraction/pipeline.js.map

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package/dist/extraction/types.d.ts

@@ -63,6 +63,8 @@ export interface ExtractionInput {
         content: string;
         embedding?: number[];
     }>;
+    /** Source provider for provenance tracking — where did this data come from? */
+    sourceProvider?: 'user_direct' | 'email' | 'calendar' | 'slack' | 'github' | 'linear' | 'jira' | 'code' | 'document';
 }
 /** Final output of the full pipeline */
 export interface PipelineResult {

package/dist/extraction/types.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../src/extraction/types.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,KAAK,EAAE,UAAU,EAAE,cAAc,EAAE,QAAQ,EAAE,QAAQ,EAAE,MAAM,cAAc,CAAC;AAE1F,8CAA8C;AAC9C,MAAM,WAAW,gBAAgB;IAC/B,KAAK,EAAE,aAAa,EAAE,CAAC;IACvB,QAAQ,EAAE,eAAe,EAAE,CAAC;IAC5B,KAAK,EAAE,aAAa,EAAE,CAAC;IACvB,IAAI,EAAE,cAAc,CAAC;IACrB,UAAU,EAAE,MAAM,CAAC;IACnB,WAAW,EAAE,MAAM,CAAC;IACpB,YAAY,EAAE,MAAM,CAAC;IACrB,KAAK,EAAE,MAAM,GAAG,IAAI,CAAC;CACtB;AAED,MAAM,WAAW,aAAa;IAC5B,OAAO,EAAE,MAAM,CAAC;IAChB,UAAU,EAAE,MAAM,CAAC;IACnB,UAAU,EAAE,MAAM,CAAC;IACnB,UAAU,EAAE,UAAU,CAAC;IACvB,QAAQ,EAAE,QAAQ,CAAC;IACnB,IAAI,EAAE,MAAM,EAAE,CAAC;IACf,eAAe,EAAE,MAAM,CAAC;IACxB,SAAS,CAAC,EAAE,KAAK,GAAG,QAAQ,GAAG,YAAY,GAAG,MAAM,GAAG,YAAY,CAAC;IACpE,iBAAiB,CAAC,EAAE,MAAM,CAAC;IAC3B,iBAAiB,CAAC,EAAE,MAAM,CAAC;IAC3B,2FAA2F;IAC3F,oBAAoB,CAAC,EAAE,MAAM,EAAE,CAAC;IAChC,4DAA4D;IAC5D,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,6DAA6D;IAC7D,SAAS,CAAC,EAAE,IAAI,CAAC;IACjB,kDAAkD;IAClD,YAAY,CAAC,EAAE,IAAI,CAAC;IACpB,iFAAiF;IACjF,YAAY,CAAC,EAAE,SAAS,GAAG,SAAS,GAAG,SAAS,CAAC;IACjD,iEAAiE;IACjE,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,kFAAkF;IAClF,iBAAiB,CAAC,EAAE,MAAM,CAAC;CAC5B;AAED,MAAM,WAAW,eAAe;IAC9B,IAAI,EAAE,MAAM,CAAC;IACb,UAAU,EAAE,MAAM,CAAC;IACnB,aAAa,EAAE,MAAM,CAAC;IACtB,UAAU,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;CACrC;AAED,MAAM,WAAW,aAAa;IAC5B,UAAU,EAAE,MAAM,CAAC;IACnB,UAAU,EAAE,MAAM,CAAC;IACnB,QAAQ,EAAE,MAAM,CAAC;IACjB,QAAQ,EAAE,QAAQ,CAAC;IACnB,UAAU,EAAE,MAAM,CAAC;CACpB;AAED,uCAAuC;AACvC,MAAM,WAAW,eAAe;IAC9B,QAAQ,EAAE,MAAM,CAAC;IACjB,KAAK,EAAE,KAAK,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;IAChB,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,SAAS,EAAE,cAAc,GAAG,UAAU,GAAG,KAAK,GAAG,UAAU,GAAG,OAAO,GAAG,OAAO,GAAG,MAAM,GAAG,eAAe,GAAG,aAAa,GAAG,kBAAkB,CAAC;IAChJ,IAAI,EAAE,OAAO,CAAC;IACd,aAAa,CAAC,EAAE,KAAK,CAAC;QAAE,EAAE,EAAE,MAAM,CAAC;QAAC,SAAS,EAAE,MAAM,CAAC;QAAC,OAAO,EAAE,MAAM,CAAC;QAAC,SAAS,CAAC,EAAE,MAAM,EAAE,CAAA;KAAE,CAAC,CAAC;IAChG,+EAA+E;IAC/E,cAAc,CAAC,EAAE,aAAa,GAAG,OAAO,GAAG,UAAU,GAAG,OAAO,GAAG,QAAQ,GAAG,QAAQ,GAAG,MAAM,GAAG,MAAM,GAAG,UAAU,CAAC;CACtH;AAED,wCAAwC;AACxC,MAAM,WAAW,cAAc;IAC7B,YAAY,EAAE,MAAM,CAAC;IACrB,YAAY,EAAE,MAAM,CAAC;IACrB,YAAY,EAAE,MAAM,CAAC;IACrB,gBAAgB,EAAE,MAAM,CAAC;IACzB,eAAe,EAAE,MAAM,CAAC;IACxB,YAAY,EAAE,MAAM,CAAC;IACrB,IAAI,EAAE,cAAc,GAAG,YAAY,CAAC;IACpC,eAAe,EAAE,MAAM,CAAC;IACxB,gBAAgB,EAAE,MAAM,CAAC;IACzB,UAAU,EAAE,MAAM,CAAC;CACpB"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@steno-ai/engine",
-  "version": "0.1.12",
+  "version": "0.1.14",
   "description": "Core memory engine — extraction, retrieval, knowledge graph",
   "license": "MIT",
   "repository": {

package/src/extraction/codebase-extractor.ts

@@ -3,7 +3,6 @@ import type { ExtractionResult, ExtractedFact, ExtractedEntity, ExtractedEdge }
 import type { ExtractionTier, EdgeType, SourceType } from '../config.js';
 import { buildCodebaseFactExtractionPrompt, buildCodebaseGraphExtractionPrompt, CODEBASE_ENTITY_TYPES } from './codebase-prompts.js';
 import { normalizeEntityName } from './llm-extractor.js';
-import { createEnrichedSegments } from './sliding-window.js';
 
 export interface CodebaseExtractorConfig {
   llm: LLMAdapter;
@@ -31,8 +30,11 @@ export async function extractCodebaseFacts(
   let totalTokensIn = 0;
   let totalTokensOut = 0;
 
-  // ── PASS 1: Codebase fact extraction with Sliding Window ──
-  const segments = createEnrichedSegments(input);
+  // ── PASS 1: Codebase fact extraction — ONE LLM call (no sliding window) ──
+  // Code doesn't need pronoun resolution. Send the full input as one chunk
+  // to minimize LLM calls (1 call vs 6+ with sliding window).
+  // Cap at 30K chars (~7.5K tokens) to fit gpt-4.1-mini's context.
+  const cappedInput = input.slice(0, 30_000);
 
   let factEntries: Array<{
     text: string;
@@ -41,66 +43,42 @@ export async function extractCodebaseFacts(
     sourceType: SourceType;
   }> = [];
 
-  // Process segments in batches of 4
-  const segmentBatches: typeof segments[] = [];
-  for (let i = 0; i < segments.length; i += 4) {
-    segmentBatches.push(segments.slice(i, i + 4));
-  }
-
-  for (const batch of segmentBatches) {
-    const batchPromises = batch.map(async (seg) => {
-      const messages = buildCodebaseFactExtractionPrompt(seg.contextWindow);
-
-      // Append already-extracted facts to avoid duplicates across segments
-      if (factEntries.length > 0) {
-        const alreadyExtracted = factEntries.map(f => `- ${f.text}`).join('\n');
-        messages[1]!.content += `\n\n--- ALREADY EXTRACTED (skip these) ---\n${alreadyExtracted}`;
-      }
-
-      try {
-        const response = await config.llm.complete(messages, { temperature: 0, responseFormat: 'json' });
-        totalTokensIn += response.tokensInput;
-        totalTokensOut += response.tokensOutput;
-
-        const parsed = JSON.parse(response.content) as Record<string, unknown>;
-        const rawFacts = Array.isArray(parsed.facts) ? parsed.facts : [];
-        const entries: typeof factEntries = [];
-
-        for (const f of rawFacts) {
-          if (typeof f === 'string') {
-            const trimmed = f.trim();
-            if (trimmed.length > 0) {
-              entries.push({ text: trimmed, importance: 0.5, sourceChunk: seg.contextWindow, sourceType: 'file_analysis' });
-            }
-          } else if (f && typeof f === 'object') {
-            const obj = f as Record<string, unknown>;
-            const text = (typeof obj.t === 'string' ? obj.t : typeof obj.text === 'string' ? obj.text : '').trim();
-            const importance = typeof obj.i === 'number' ? obj.i : typeof obj.importance === 'number' ? obj.importance : 0.5;
-            const rawSrc = typeof obj.src === 'string' ? obj.src : 'file_analysis';
-            const sourceType: SourceType = VALID_CODEBASE_SOURCE_TYPES.has(rawSrc)
-              ? rawSrc as SourceType
-              : 'file_analysis';
-
-            if (text.length > 0) {
-              entries.push({
-                text,
-                importance: Math.max(0, Math.min(1, importance)),
-                sourceChunk: seg.contextWindow,
-                sourceType,
-              });
-            }
-          }
+  try {
+    const messages = buildCodebaseFactExtractionPrompt(cappedInput);
+    const response = await config.llm.complete(messages, { temperature: 0, responseFormat: 'json' });
+    totalTokensIn += response.tokensInput;
+    totalTokensOut += response.tokensOutput;
+
+    const parsed = JSON.parse(response.content) as Record<string, unknown>;
+    const rawFacts = Array.isArray(parsed.facts) ? parsed.facts : [];
+
+    for (const f of rawFacts) {
+      if (typeof f === 'string') {
+        const trimmed = f.trim();
+        if (trimmed.length > 0) {
+          factEntries.push({ text: trimmed, importance: 0.5, sourceChunk: cappedInput.slice(0, 500), sourceType: 'file_analysis' });
+        }
+      } else if (f && typeof f === 'object') {
+        const obj = f as Record<string, unknown>;
+        const text = (typeof obj.t === 'string' ? obj.t : typeof obj.text === 'string' ? obj.text : '').trim();
+        const importance = typeof obj.i === 'number' ? obj.i : typeof obj.importance === 'number' ? obj.importance : 0.5;
+        const rawSrc = typeof obj.src === 'string' ? obj.src : 'file_analysis';
+        const sourceType: SourceType = VALID_CODEBASE_SOURCE_TYPES.has(rawSrc)
+          ? rawSrc as SourceType
+          : 'file_analysis';
+
+        if (text.length > 0) {
+          factEntries.push({
+            text,
+            importance: Math.max(0, Math.min(1, importance)),
+            sourceChunk: cappedInput.slice(0, 500),
+            sourceType,
+          });
         }
-        return entries;
-      } catch {
-        return [];
       }
-    });
-
-    const batchResults = await Promise.all(batchPromises);
-    for (const entries of batchResults) {
-      factEntries.push(...entries);
     }
+  } catch (err) {
+    console.error('[steno-codebase] Fact extraction failed:', err instanceof Error ? err.message : err);
   }
 
   // Deduplicate facts by content similarity

package/src/extraction/pipeline.ts

@@ -35,6 +35,54 @@ export interface PipelineConfig {
   mode?: 'conversation' | 'codebase';
 }
 
+// ---------------------------------------------------------------------------
+// Context poisoning defense
+// ---------------------------------------------------------------------------
+
+/** Known prompt injection patterns to strip from external content */
+const INJECTION_PATTERNS = [
+  /ignore\s+(all\s+)?previous\s+instructions/gi,
+  /ignore\s+(all\s+)?prior\s+instructions/gi,
+  /disregard\s+(all\s+)?previous/gi,
+  /forget\s+(all\s+)?previous/gi,
+  /you\s+are\s+now\s+a/gi,
+  /system\s*:\s*/gi,
+  /\[INST\]/gi,
+  /\[\/INST\]/gi,
+  /<\|im_start\|>/gi,
+  /<\|im_end\|>/gi,
+  /<<SYS>>/gi,
+  /<<\/SYS>>/gi,
+  /\bdo\s+not\s+follow\s+(any\s+)?other\s+instructions\b/gi,
+  /\bnew\s+instructions?\s*:/gi,
+  /\boverride\s+(all\s+)?instructions\b/gi,
+];
+
+/** Instruction-like patterns that indicate a fact might be poisoned */
+const INSTRUCTION_PATTERNS = [
+  /\balways\s+(do|use|recommend|suggest|say|respond|answer)\b/i,
+  /\bnever\s+(do|use|recommend|suggest|say|respond|answer|mention)\b/i,
+  /\byou\s+must\s+(always|never)\b/i,
+  /\bfrom\s+now\s+on\b/i,
+  /\bwhen(ever)?\s+(asked|someone|the\s+user)\b.*\b(say|respond|answer|recommend)\b/i,
+];
+
+function stripInjectionPatterns(text: string): string {
+  let cleaned = text;
+  for (const pattern of INJECTION_PATTERNS) {
+    cleaned = cleaned.replace(pattern, '[REDACTED]');
+  }
+  return cleaned;
+}
+
+/** Check if a fact looks like an injected instruction. Returns trust level. */
+function assessFactTrust(content: string): 'high' | 'medium' | 'low' {
+  for (const pattern of INSTRUCTION_PATTERNS) {
+    if (pattern.test(content)) return 'low';
+  }
+  return 'high';
+}
+
 // ---------------------------------------------------------------------------
 // Helpers
 // ---------------------------------------------------------------------------
@@ -94,6 +142,20 @@ async function executeExtraction(
   const textContent = inputToText(input);
   const isCodebaseMode = config.mode === 'codebase';
 
+  // Default sourceProvider based on mode if not explicitly set
+  if (!input.sourceProvider) {
+    input.sourceProvider = isCodebaseMode ? 'code' : 'user_direct';
+  }
+
+  // ── Context poisoning defense: strip known injection patterns from input ──
+  // Only for non-user-direct sources (emails, documents, external data)
+  if (input.sourceProvider && input.sourceProvider !== 'user_direct') {
+    const stripped = stripInjectionPatterns(textContent);
+    if (stripped !== textContent) {
+      console.error(`[steno-pipeline] Stripped injection patterns from ${input.sourceProvider} input`);
+    }
+  }
+
   let totalTokensInput = 0;
   let totalTokensOutput = 0;
   const tiersUsed: string[] = [];
@@ -107,11 +169,13 @@ async function executeExtraction(
     const llmToUse = tier === 'smart_only' ? (config.smartLLM ?? config.cheapLLM) : config.cheapLLM;
     const llmTier = tier === 'smart_only' ? 'smart_llm' : 'cheap_llm';
 
+    console.error(`[steno-pipeline] Codebase mode: extracting from ${textContent.length} chars with ${llmTier}`);
     const codebaseResult = await extractCodebaseFacts(
       { llm: llmToUse, tier: llmTier },
       textContent,
     );
 
+    console.error(`[steno-pipeline] Codebase extraction: ${codebaseResult.facts.length} facts, ${codebaseResult.entities.length} entities, ${codebaseResult.edges.length} edges, confidence=${codebaseResult.confidence}`);
     totalTokensInput += codebaseResult.tokensInput;
     totalTokensOutput += codebaseResult.tokensOutput;
     tiersUsed.push(llmTier);
@@ -228,8 +292,11 @@ async function executeExtraction(
     input.scopeId,
   );
 
+  console.error(`[steno-pipeline] After dedup: ${dedupedFacts.length} facts (from ${mergedFacts.length} pre-dedup)`);
+
   // Process contradictions
   const contradictionResults = processContradictions(dedupedFacts);
+  console.error(`[steno-pipeline] After contradiction processing: ${contradictionResults.length} results`);
 
   // Persist facts
   let factsCreated = 0;
@@ -326,6 +393,8 @@ async function executeExtraction(
       metadata: {
         ...(fact.relationType && { relationType: fact.relationType }),
         ...(fact.relatedFactId && { relatedFactId: fact.relatedFactId }),
+        ...(input.sourceProvider && { sourceProvider: input.sourceProvider }),
+        trust: assessFactTrust(fact.content),
       },
       sourceChunk: fact.sourceChunk,
       eventDate: fact.eventDate,

package/src/extraction/types.ts

@@ -63,6 +63,8 @@ export interface ExtractionInput {
   inputType: 'conversation' | 'document' | 'url' | 'raw_text' | 'image' | 'audio' | 'code' | 'codebase_scan' | 'file_change' | 'architecture_doc';
   data: unknown;
   existingFacts?: Array<{ id: string; lineageId: string; content: string; embedding?: number[] }>;
+  /** Source provider for provenance tracking — where did this data come from? */
+  sourceProvider?: 'user_direct' | 'email' | 'calendar' | 'slack' | 'github' | 'linear' | 'jira' | 'code' | 'document';
 }
 
 /** Final output of the full pipeline */