@stackmemoryai/stackmemory 0.8.0 → 0.8.1

package/dist/src/cli/commands/onboard.js

@@ -100,7 +100,11 @@ async function runOnboarding() {
         const mod = await import("open");
         await mod.default(signupUrl);
       } catch (e) {
-        console.log(chalk.yellow("Could not open browser automatically. Please sign up and obtain your DATABASE_URL."));
+        console.log(
+          chalk.yellow(
+            "Could not open browser automatically. Please sign up and obtain your DATABASE_URL."
+          )
+        );
       }
     }
     const { databaseUrl } = await inquirer.prompt([
@@ -359,11 +363,22 @@ async function applyConfiguration(config) {
   if (config.storageMode === "hosted" && config.databaseUrl) {
     try {
       const envFile = join(configPath, "railway.env");
-      writeFileSync(envFile, `# StackMemory hosted DB
+      writeFileSync(
+        envFile,
+        `# StackMemory hosted DB
 DATABASE_URL=${config.databaseUrl}
-`);
-      console.log(chalk.green("  \u2713 Saved hosted DB settings to ~/.stackmemory/railway.env"));
-      console.log(chalk.gray("    Tip: export DATABASE_URL from this file in your shell profile."));
+`
+      );
+      console.log(
+        chalk.green(
+          "  \u2713 Saved hosted DB settings to ~/.stackmemory/railway.env"
+        )
+      );
+      console.log(
+        chalk.gray(
+          "    Tip: export DATABASE_URL from this file in your shell profile."
+        )
+      );
     } catch (e) {
       console.log(chalk.yellow("  \u26A0 Could not write hosted DB env file"));
     }
@@ -426,7 +441,8 @@ done
 # Auto-initialize StackMemory if in git repo without it
 if [ -d ".git" ] && [ ! -d ".stackmemory" ]; then
     echo "\u{1F4E6} Initializing StackMemory for this project..."
-    stackmemory init --silent 2>/dev/null || true
+    # Quiet init (no unsupported flags)
+    stackmemory init >/dev/null 2>&1 || true
 fi
 
 # Load existing context if available

package/dist/src/cli/commands/onboard.js.map

@@ -1,7 +1,7 @@
 {
   "version": 3,
   "sources": ["../../../../src/cli/commands/onboard.ts"],
-  "sourcesContent": ["#!/usr/bin/env node\n/**\n * StackMemory Onboarding CLI\n * Interactive setup for new StackMemory installations\n */\n\nimport { Command } from 'commander';\nimport inquirer from 'inquirer';\nimport chalk from 'chalk';\nimport { homedir } from 'os';\nimport { join } from 'path';\nimport { existsSync, mkdirSync, writeFileSync } from 'fs';\nimport { execSync, execFileSync } from 'child_process';\nimport { WorktreeManager } from '../../core/worktree/worktree-manager.js';\nimport { ProjectManager } from '../../core/projects/project-manager.js';\nimport { logger } from '../../core/monitoring/logger.js';\n\ninterface OnboardingConfig {\n  setupType: 'basic' | 'advanced';\n  enableWorktrees: boolean;\n  worktreeIsolation: boolean;\n  enableProjects: boolean;\n  scanProjects: boolean;\n  enableLinear: boolean;\n  linearApiKey?: string;\n  enableAnalytics: boolean;\n  defaultContextPath: string;\n  storageMode: 'local' | 'hosted';\n  databaseUrl?: string;\n}\n\nexport function registerOnboardingCommand(program: Command): void {\n  program\n    .command('onboard')\n    .alias('setup')\n    .description('Interactive setup for StackMemory')\n    .option('--reset', 'Reset all configurations and start fresh')\n    .action(async (options) => {\n      console.log(chalk.cyan('\\n\uD83D\uDE80 Welcome to StackMemory Setup!\\n'));\n\n      // Check if already configured\n      const configPath = join(homedir(), '.stackmemory');\n      if (existsSync(configPath) && !options.reset) {\n        const { proceed } = await inquirer.prompt([\n          {\n            type: 'confirm',\n            name: 'proceed',\n            message:\n              'StackMemory is already configured. Do you want to reconfigure?',\n            default: false,\n          },\n        ]);\n\n        if (!proceed) {\n          console.log(chalk.yellow('\\nSetup cancelled.'));\n          return;\n        }\n      }\n\n      try {\n        const config = await runOnboarding();\n        await applyConfiguration(config);\n\n        console.log(\n          chalk.green('\\n\u2705 StackMemory setup completed successfully!\\n')\n        );\n        showNextSteps(config);\n      } catch (error: unknown) {\n        logger.error('Onboarding failed', error as Error);\n        console.error(\n          chalk.red('\\n\u274C Setup failed:'),\n          (error as Error).message\n        );\n        process.exit(1);\n      }\n    });\n}\n\nasync function runOnboarding(): Promise<OnboardingConfig> {\n  // Basic or Advanced Setup\n  const { setupType } = await inquirer.prompt([\n    {\n      type: 'list',\n      name: 'setupType',\n      message: 'Choose your setup type:',\n      choices: [\n        { name: 'Basic (Recommended for most users)', value: 'basic' },\n        { name: 'Advanced (Full customization)', value: 'advanced' },\n      ],\n      default: 'basic',\n    },\n  ]);\n\n  let config: OnboardingConfig = {\n    setupType,\n    enableWorktrees: false,\n    worktreeIsolation: true,\n    enableProjects: true,\n    scanProjects: false,\n    enableLinear: false,\n    enableAnalytics: true,\n    defaultContextPath: join(homedir(), '.stackmemory'),\n    storageMode: 'local',\n  };\n\n  // Choose storage mode\n  const { storageMode } = await inquirer.prompt([\n    {\n      type: 'list',\n      name: 'storageMode',\n      message: 'Where should StackMemory store data?',\n      choices: [\n        { name: 'Local (free, SQLite in ~/.stackmemory)', value: 'local' },\n        { name: 'Hosted (paid, managed Postgres)', value: 'hosted' },\n      ],\n      default: 'local',\n    },\n  ]);\n  config.storageMode = storageMode;\n\n  if (storageMode === 'hosted') {\n    const { hasAccount } = await inquirer.prompt([\n      {\n        type: 'confirm',\n        name: 'hasAccount',\n        message: 'Do you already have a hosted account & connection string?',\n        default: false,\n      },\n    ]);\n\n    if (!hasAccount) {\n      try {\n        const signupUrl = 'https://stackmemory.ai/hosted';\n        console.log(chalk.gray(`Opening signup page: ${signupUrl}`));\n        // Lazy load open to avoid ES module issues\n        const mod = await import('open');\n        await mod.default(signupUrl);\n      } catch (e) {\n        console.log(chalk.yellow('Could not open browser automatically. Please sign up and obtain your DATABASE_URL.'));\n      }\n    }\n\n    const { databaseUrl } = await inquirer.prompt([\n      {\n        type: 'password',\n        name: 'databaseUrl',\n        message: 'Paste your DATABASE_URL (postgres://...)',\n        validate: (input: string) =>\n          input.startsWith('postgres://') || input.startsWith('postgresql://')\n            ? true\n            : 'Must start with postgres:// or postgresql://',\n      },\n    ]);\n    config.databaseUrl = databaseUrl;\n  }\n\n  if (setupType === 'basic') {\n    // Basic setup with sensible defaults\n    const basicAnswers = await inquirer.prompt([\n      {\n        type: 'confirm',\n        name: 'enableWorktrees',\n        message:\n          'Enable Git worktree support? (Recommended for multi-branch workflows)',\n        default: false,\n      },\n      {\n        type: 'confirm',\n        name: 'scanProjects',\n        message: 'Scan and organize your existing projects?',\n        default: true,\n      },\n      {\n        type: 'confirm',\n        name: 'enableLinear',\n        message: 'Connect to Linear for task management?',\n        default: false,\n      },\n    ]);\n\n    config = { ...config, ...basicAnswers };\n\n    if (basicAnswers.enableLinear) {\n      const { linearApiKey } = await inquirer.prompt([\n        {\n          type: 'password',\n          name: 'linearApiKey',\n          message: 'Enter your Linear API key:',\n          validate: (input: string) =>\n            input.length > 0 || 'API key is required',\n        },\n      ]);\n      config.linearApiKey = linearApiKey;\n    }\n  } else {\n    // Advanced setup with all options\n    const advancedAnswers = await inquirer.prompt([\n      {\n        type: 'confirm',\n        name: 'enableWorktrees',\n        message: 'Enable Git worktree support?',\n        default: false,\n      },\n    ]);\n\n    if (advancedAnswers.enableWorktrees) {\n      const worktreeAnswers = await inquirer.prompt([\n        {\n          type: 'confirm',\n          name: 'worktreeIsolation',\n          message: 'Isolate contexts between worktrees? (Recommended)',\n          default: true,\n        },\n        {\n          type: 'confirm',\n          name: 'autoDetect',\n          message: 'Auto-detect worktrees when switching directories?',\n          default: true,\n        },\n        {\n          type: 'confirm',\n          name: 'shareGlobal',\n          message: 'Share global context across worktrees?',\n          default: false,\n        },\n        {\n          type: 'number',\n          name: 'syncInterval',\n          message: 'Context sync interval in minutes (0 to disable):',\n          default: 15,\n          validate: (input: number) => input >= 0 || 'Must be 0 or positive',\n        },\n      ]);\n\n      config = { ...config, ...advancedAnswers, ...worktreeAnswers };\n    }\n\n    const projectAnswers = await inquirer.prompt([\n      {\n        type: 'confirm',\n        name: 'enableProjects',\n        message: 'Enable automatic project management?',\n        default: true,\n      },\n    ]);\n\n    if (projectAnswers.enableProjects) {\n      const projectDetailAnswers: any = await inquirer.prompt([\n        {\n          type: 'confirm',\n          name: 'scanProjects',\n          message: 'Scan for existing projects now?',\n          default: true,\n        },\n        {\n          type: 'checkbox',\n          name: 'scanPaths',\n          message: 'Select directories to scan:',\n          choices: [\n            { name: '~/Dev', value: join(homedir(), 'Dev'), checked: true },\n            { name: '~/dev', value: join(homedir(), 'dev'), checked: true },\n            {\n              name: '~/Projects',\n              value: join(homedir(), 'Projects'),\n              checked: true,\n            },\n            {\n              name: '~/projects',\n              value: join(homedir(), 'projects'),\n              checked: true,\n            },\n            { name: '~/Work', value: join(homedir(), 'Work'), checked: false },\n            { name: '~/code', value: join(homedir(), 'code'), checked: true },\n            {\n              name: '~/Documents/GitHub',\n              value: join(homedir(), 'Documents/GitHub'),\n              checked: false,\n            },\n          ],\n          when: (): boolean => projectDetailAnswers.scanProjects,\n        },\n      ]);\n\n      config = { ...config, ...projectAnswers, ...projectDetailAnswers };\n    }\n\n    const integrationAnswers = await inquirer.prompt([\n      {\n        type: 'confirm',\n        name: 'enableLinear',\n        message: 'Enable Linear integration?',\n        default: false,\n      },\n      {\n        type: 'password',\n        name: 'linearApiKey',\n        message: 'Linear API key:',\n        when: (answers: any) => answers.enableLinear,\n        validate: (input: string) => input.length > 0 || 'API key is required',\n      },\n      {\n        type: 'confirm',\n        name: 'enableAnalytics',\n        message: 'Enable usage analytics? (Local only)',\n        default: true,\n      },\n      {\n        type: 'input',\n        name: 'defaultContextPath',\n        message: 'Default context storage path:',\n        default: join(homedir(), '.stackmemory'),\n        validate: (input: string) => input.length > 0 || 'Path is required',\n      },\n    ]);\n\n    config = { ...config, ...integrationAnswers };\n  }\n\n  return config;\n}\n\nasync function applyConfiguration(config: OnboardingConfig): Promise<void> {\n  const configPath = join(homedir(), '.stackmemory');\n\n  // Create base directory structure\n  console.log(chalk.gray('\\nCreating directory structure...'));\n  const dirs = [\n    configPath,\n    join(configPath, 'contexts'),\n    join(configPath, 'projects'),\n    join(configPath, 'worktrees'),\n    join(configPath, 'bin'),\n    join(configPath, 'logs'),\n    join(configPath, 'analytics'),\n  ];\n\n  for (const dir of dirs) {\n    if (!existsSync(dir)) {\n      mkdirSync(dir, { recursive: true });\n    }\n  }\n\n  // Configure git worktree support\n  if (config.enableWorktrees) {\n    console.log(chalk.gray('Configuring worktree support...'));\n    const worktreeManager = WorktreeManager.getInstance();\n    worktreeManager.saveConfig({\n      enabled: true,\n      autoDetect: true,\n      isolateContexts: config.worktreeIsolation,\n      shareGlobalContext: false,\n      syncInterval: 15,\n    });\n\n    // Detect current worktrees\n    const worktrees = worktreeManager.detectWorktrees();\n    if (worktrees.length > 0) {\n      console.log(chalk.green(`  \u2713 Found ${worktrees.length} worktree(s)`));\n      worktrees.forEach((wt) => {\n        console.log(chalk.gray(`    - ${wt.branch} at ${wt.path}`));\n      });\n    }\n  }\n\n  // Scan and organize projects\n  if (config.enableProjects && config.scanProjects) {\n    console.log(chalk.gray('Scanning for projects...'));\n    const projectManager = ProjectManager.getInstance();\n\n    const scanPaths = (config as any).scanPaths || [\n      join(homedir(), 'Dev'),\n      join(homedir(), 'dev'),\n      join(homedir(), 'Projects'),\n      join(homedir(), 'projects'),\n      join(homedir(), 'code'),\n    ];\n\n    await projectManager.scanAndCategorizeAllProjects(\n      scanPaths.filter((p: string) => existsSync(p))\n    );\n\n    const projects = projectManager.getAllProjects();\n    console.log(chalk.green(`  \u2713 Found ${projects.length} project(s)`));\n\n    // Show summary\n    const byType: Record<string, number> = {};\n    projects.forEach((p) => {\n      byType[p.accountType] = (byType[p.accountType] || 0) + 1;\n    });\n\n    Object.entries(byType).forEach(([type, count]) => {\n      console.log(chalk.gray(`    - ${type}: ${count} project(s)`));\n    });\n  }\n\n  // Configure Linear integration\n  if (config.enableLinear && config.linearApiKey) {\n    console.log(chalk.gray('Configuring Linear integration...'));\n    const linearConfig = {\n      apiKey: config.linearApiKey,\n      autoSync: true,\n      syncInterval: 300000, // 5 minutes\n    };\n\n    writeFileSync(\n      join(configPath, 'linear-config.json'),\n      JSON.stringify(linearConfig, null, 2)\n    );\n    console.log(chalk.green('  \u2713 Linear configured'));\n  }\n\n  // Save main configuration\n  const mainConfig = {\n    version: '1.0.0',\n    setupCompleted: new Date().toISOString(),\n    features: {\n      worktrees: config.enableWorktrees,\n      projects: config.enableProjects,\n      linear: config.enableLinear,\n      analytics: config.enableAnalytics,\n    },\n    paths: {\n      default: config.defaultContextPath,\n    },\n    database: {\n      mode: config.storageMode,\n      ...(config.databaseUrl ? { url: config.databaseUrl } : {}),\n    },\n  };\n\n  writeFileSync(\n    join(configPath, 'config.json'),\n    JSON.stringify(mainConfig, null, 2)\n  );\n\n  // If hosted selected, persist a simple env file suggestion\n  if (config.storageMode === 'hosted' && config.databaseUrl) {\n    try {\n      const envFile = join(configPath, 'railway.env');\n      writeFileSync(envFile, `# StackMemory hosted DB\\nDATABASE_URL=${config.databaseUrl}\\n`);\n      console.log(chalk.green('  \u2713 Saved hosted DB settings to ~/.stackmemory/railway.env'));\n      console.log(chalk.gray('    Tip: export DATABASE_URL from this file in your shell profile.'));\n    } catch (e) {\n      console.log(chalk.yellow('  \u26A0 Could not write hosted DB env file'));\n    }\n  }\n\n  // Create claude-sm symlink for easy access\n  const binPath = '/usr/local/bin/claude-sm';\n  const sourcePath = join(configPath, 'bin', 'stackmemory');\n\n  try {\n    // Create wrapper script\n    const wrapperScript = `#!/bin/bash\n# StackMemory CLI wrapper with worktree support\nCURRENT_DIR=$(pwd)\n\n# Auto-detect worktree if enabled\nif [ -f ~/.stackmemory/worktree-config.json ]; then\n  WORKTREE_ENABLED=$(grep '\"enabled\": true' ~/.stackmemory/worktree-config.json)\n  if [ ! -z \"$WORKTREE_ENABLED\" ]; then\n    # Check if we're in a git worktree\n    if git worktree list &>/dev/null; then\n      export SM_WORKTREE_PATH=\"$CURRENT_DIR\"\n    fi\n  fi\nfi\n\n# Run StackMemory with context\nexec stackmemory \"$@\"\n`;\n\n    writeFileSync(sourcePath, wrapperScript);\n    execFileSync('chmod', ['+x', sourcePath]);\n\n    // Create symlink if it doesn't exist\n    if (!existsSync(binPath)) {\n      execFileSync('ln', ['-s', sourcePath, binPath]);\n      console.log(chalk.green('  \u2713 Created claude-sm command'));\n    }\n  } catch (error: unknown) {\n    console.log(\n      chalk.yellow('  \u26A0 Could not create claude-sm symlink (may need sudo)')\n    );\n  }\n\n  // Create codex-sm symlink for easy access\n  const codexBinPath = '/usr/local/bin/codex-sm';\n  const codexSourcePath = join(configPath, 'bin', 'codex-sm');\n\n  try {\n    // Create Codex wrapper script (based on scripts/codex-wrapper.sh)\n    const codexWrapper = `#!/bin/bash\n# Codex CLI wrapper with StackMemory integration\n# Usage: codex-sm [--auto-sync] [--sync-interval=MINUTES] [args...]\n\n# Flags\nAUTO_SYNC=false\nSYNC_INTERVAL=5\nfor arg in \"$@\"; do\n    case $arg in\n        --auto-sync)\n            AUTO_SYNC=true\n            shift\n            ;;\n        --sync-interval=*)\n            SYNC_INTERVAL=\"\\${arg#*=}\"\n            shift\n            ;;\n    esac\ndone\n\n# Auto-initialize StackMemory if in git repo without it\nif [ -d \".git\" ] && [ ! -d \".stackmemory\" ]; then\n    echo \"\uD83D\uDCE6 Initializing StackMemory for this project...\"\n    stackmemory init --silent 2>/dev/null || true\nfi\n\n# Load existing context if available\nif [ -d \".stackmemory\" ]; then\n    echo \"\uD83E\uDDE0 Loading StackMemory context...\"\n    stackmemory status --brief 2>/dev/null || true\nfi\n\n# Start Linear auto-sync in background if requested\nSYNC_PID=\"\"\nif [ \"$AUTO_SYNC\" = true ] && [ -n \"$LINEAR_API_KEY\" ]; then\n    echo \"\uD83D\uDD04 Starting Linear auto-sync (${SYNC_INTERVAL}min intervals)...\"\n    (\n        while true; do\n            sleep $((SYNC_INTERVAL * 60))\n            if [ -d \".stackmemory\" ]; then\n                stackmemory linear sync --quiet 2>/dev/null || true\n            fi\n        done\n    ) &\n    SYNC_PID=$!\nfi\n\ncleanup() {\n    echo \"\"\n    echo \"\uD83D\uDCDD Saving StackMemory context...\"\n\n    # Kill auto-sync if running\n    if [ -n \"$SYNC_PID\" ] && kill -0 $SYNC_PID 2>/dev/null; then\n        echo \"\uD83D\uDED1 Stopping auto-sync...\"\n        kill $SYNC_PID 2>/dev/null || true\n    fi\n\n    # Save project status and final sync\n    if [ -d \".stackmemory\" ]; then\n        stackmemory status 2>/dev/null\n        if [ -n \"$LINEAR_API_KEY\" ]; then\n            echo \"\uD83D\uDD04 Final Linear sync...\"\n            stackmemory linear sync 2>/dev/null\n        fi\n        echo \"\u2705 StackMemory context saved\"\n    fi\n}\n\ntrap cleanup EXIT INT TERM\n\n# Run Codex CLI\nif command -v codex &> /dev/null; then\n    codex \"$@\"\nelif command -v codex-cli &> /dev/null; then\n    codex-cli \"$@\"\nelse\n    echo \"\u274C Codex CLI not found. Please install it first.\"\n    echo \"   See: https://github.com/openai/codex-cli\"\n    exit 1\nfi\n`;\n\n    writeFileSync(codexSourcePath, codexWrapper);\n    execFileSync('chmod', ['+x', codexSourcePath]);\n\n    // Create symlink if it doesn't exist\n    if (!existsSync(codexBinPath)) {\n      execFileSync('ln', ['-s', codexSourcePath, codexBinPath]);\n      console.log(chalk.green('  \u2713 Created codex-sm command'));\n    }\n  } catch (error: unknown) {\n    console.log(\n      chalk.yellow('  \u26A0 Could not create codex-sm symlink (may need sudo)')\n    );\n  }\n}\n\nfunction showNextSteps(config: OnboardingConfig): void {\n  console.log(chalk.cyan('\uD83C\uDF89 Next Steps:\\n'));\n\n  console.log('1. Initialize StackMemory in your project:');\n  console.log(chalk.gray('   cd your-project'));\n  console.log(chalk.gray('   stackmemory init\\n'));\n\n  if (config.enableWorktrees) {\n    console.log('2. Create a new worktree:');\n    console.log(\n      chalk.gray(\n        '   git worktree add -b feature/new-feature ../project-feature'\n      )\n    );\n    console.log(chalk.gray('   cd ../project-feature'));\n    console.log(\n      chalk.gray(\n        '   stackmemory status  # Isolated context for this worktree\\n'\n      )\n    );\n  }\n\n  console.log('3. Use with Claude:');\n  console.log(chalk.gray('   claude-sm  # Or use stackmemory directly\\n'));\n\n  console.log('4. Use with Codex:');\n  console.log(chalk.gray('   codex-sm   # Codex + StackMemory integration\\n'));\n\n  if (config.enableLinear) {\n    console.log('5. Sync with Linear:');\n    console.log(chalk.gray('   stackmemory linear sync\\n'));\n  }\n\n  console.log('For more help:');\n  console.log(chalk.gray('   stackmemory --help'));\n  console.log(chalk.gray('   stackmemory projects --help'));\n  if (config.enableWorktrees) {\n    console.log(chalk.gray('   stackmemory worktree --help'));\n  }\n}\n"],
-  "mappings": 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Do you want to reconfigure?',\n            default: false,\n          },\n        ]);\n\n        if (!proceed) {\n          console.log(chalk.yellow('\\nSetup cancelled.'));\n          return;\n        }\n      }\n\n      try {\n        const config = await runOnboarding();\n        await applyConfiguration(config);\n\n        console.log(\n          chalk.green('\\n\u2705 StackMemory setup completed successfully!\\n')\n        );\n        showNextSteps(config);\n      } catch (error: unknown) {\n        logger.error('Onboarding failed', error as Error);\n        console.error(\n          chalk.red('\\n\u274C Setup failed:'),\n          (error as Error).message\n        );\n        process.exit(1);\n      }\n    });\n}\n\nasync function runOnboarding(): Promise<OnboardingConfig> {\n  // Basic or Advanced Setup\n  const { setupType } = await inquirer.prompt([\n    {\n      type: 'list',\n      name: 'setupType',\n      message: 'Choose your setup type:',\n      choices: [\n        { name: 'Basic (Recommended for most users)', value: 'basic' },\n        { name: 'Advanced (Full customization)', value: 'advanced' },\n      ],\n      default: 'basic',\n    },\n  ]);\n\n  let config: OnboardingConfig = {\n    setupType,\n    enableWorktrees: false,\n    worktreeIsolation: true,\n    enableProjects: true,\n    scanProjects: false,\n    enableLinear: false,\n    enableAnalytics: true,\n    defaultContextPath: join(homedir(), '.stackmemory'),\n    storageMode: 'local',\n  };\n\n  // Choose storage mode\n  const { storageMode } = await inquirer.prompt([\n    {\n      type: 'list',\n      name: 'storageMode',\n      message: 'Where should StackMemory store data?',\n      choices: [\n        { name: 'Local (free, SQLite in ~/.stackmemory)', value: 'local' },\n        { name: 'Hosted (paid, managed Postgres)', value: 'hosted' },\n      ],\n      default: 'local',\n    },\n  ]);\n  config.storageMode = storageMode;\n\n  if (storageMode === 'hosted') {\n    const { hasAccount } = await inquirer.prompt([\n      {\n        type: 'confirm',\n        name: 'hasAccount',\n        message: 'Do you already have a hosted account & connection string?',\n        default: false,\n      },\n    ]);\n\n    if (!hasAccount) {\n      try {\n        const signupUrl = 'https://stackmemory.ai/hosted';\n        console.log(chalk.gray(`Opening signup page: ${signupUrl}`));\n        // Lazy load open to avoid ES module issues\n        const mod = await import('open');\n        await mod.default(signupUrl);\n      } catch (e) {\n        console.log(\n          chalk.yellow(\n            'Could not open browser automatically. Please sign up and obtain your DATABASE_URL.'\n          )\n        );\n      }\n    }\n\n    const { databaseUrl } = await inquirer.prompt([\n      {\n        type: 'password',\n        name: 'databaseUrl',\n        message: 'Paste your DATABASE_URL (postgres://...)',\n        validate: (input: string) =>\n          input.startsWith('postgres://') || input.startsWith('postgresql://')\n            ? true\n            : 'Must start with postgres:// or postgresql://',\n      },\n    ]);\n    config.databaseUrl = databaseUrl;\n  }\n\n  if (setupType === 'basic') {\n    // Basic setup with sensible defaults\n    const basicAnswers = await inquirer.prompt([\n      {\n        type: 'confirm',\n        name: 'enableWorktrees',\n        message:\n          'Enable Git worktree support? (Recommended for multi-branch workflows)',\n        default: false,\n      },\n      {\n        type: 'confirm',\n        name: 'scanProjects',\n        message: 'Scan and organize your existing projects?',\n        default: true,\n      },\n      {\n        type: 'confirm',\n        name: 'enableLinear',\n        message: 'Connect to Linear for task management?',\n        default: false,\n      },\n    ]);\n\n    config = { ...config, ...basicAnswers };\n\n    if (basicAnswers.enableLinear) {\n      const { linearApiKey } = await inquirer.prompt([\n        {\n          type: 'password',\n          name: 'linearApiKey',\n          message: 'Enter your Linear API key:',\n          validate: (input: string) =>\n            input.length > 0 || 'API key is required',\n        },\n      ]);\n      config.linearApiKey = linearApiKey;\n    }\n  } else {\n    // Advanced setup with all options\n    const advancedAnswers = await inquirer.prompt([\n      {\n        type: 'confirm',\n        name: 'enableWorktrees',\n        message: 'Enable Git worktree support?',\n        default: false,\n      },\n    ]);\n\n    if (advancedAnswers.enableWorktrees) {\n      const worktreeAnswers = await inquirer.prompt([\n        {\n          type: 'confirm',\n          name: 'worktreeIsolation',\n          message: 'Isolate contexts between worktrees? (Recommended)',\n          default: true,\n        },\n        {\n          type: 'confirm',\n          name: 'autoDetect',\n          message: 'Auto-detect worktrees when switching directories?',\n          default: true,\n        },\n        {\n          type: 'confirm',\n          name: 'shareGlobal',\n          message: 'Share global context across worktrees?',\n          default: false,\n        },\n        {\n          type: 'number',\n          name: 'syncInterval',\n          message: 'Context sync interval in minutes (0 to disable):',\n          default: 15,\n          validate: (input: number) => input >= 0 || 'Must be 0 or positive',\n        },\n      ]);\n\n      config = { ...config, ...advancedAnswers, ...worktreeAnswers };\n    }\n\n    const projectAnswers = await inquirer.prompt([\n      {\n        type: 'confirm',\n        name: 'enableProjects',\n        message: 'Enable automatic project management?',\n        default: true,\n      },\n    ]);\n\n    if (projectAnswers.enableProjects) {\n      const projectDetailAnswers: any = await inquirer.prompt([\n        {\n          type: 'confirm',\n          name: 'scanProjects',\n          message: 'Scan for existing projects now?',\n          default: true,\n        },\n        {\n          type: 'checkbox',\n          name: 'scanPaths',\n          message: 'Select directories to scan:',\n          choices: [\n            { name: '~/Dev', value: join(homedir(), 'Dev'), checked: true },\n            { name: '~/dev', value: join(homedir(), 'dev'), checked: true },\n            {\n              name: '~/Projects',\n              value: join(homedir(), 'Projects'),\n              checked: true,\n            },\n            {\n              name: '~/projects',\n              value: join(homedir(), 'projects'),\n              checked: true,\n            },\n            { name: '~/Work', value: join(homedir(), 'Work'), checked: false },\n            { name: '~/code', value: join(homedir(), 'code'), checked: true },\n            {\n              name: '~/Documents/GitHub',\n              value: join(homedir(), 'Documents/GitHub'),\n              checked: false,\n            },\n          ],\n          when: (): boolean => projectDetailAnswers.scanProjects,\n        },\n      ]);\n\n      config = { ...config, ...projectAnswers, ...projectDetailAnswers };\n    }\n\n    const integrationAnswers = await inquirer.prompt([\n      {\n        type: 'confirm',\n        name: 'enableLinear',\n        message: 'Enable Linear integration?',\n        default: false,\n      },\n      {\n        type: 'password',\n        name: 'linearApiKey',\n        message: 'Linear API key:',\n        when: (answers: any) => answers.enableLinear,\n        validate: (input: string) => input.length > 0 || 'API key is required',\n      },\n      {\n        type: 'confirm',\n        name: 'enableAnalytics',\n        message: 'Enable usage analytics? (Local only)',\n        default: true,\n      },\n      {\n        type: 'input',\n        name: 'defaultContextPath',\n        message: 'Default context storage path:',\n        default: join(homedir(), '.stackmemory'),\n        validate: (input: string) => input.length > 0 || 'Path is required',\n      },\n    ]);\n\n    config = { ...config, ...integrationAnswers };\n  }\n\n  return config;\n}\n\nasync function applyConfiguration(config: OnboardingConfig): Promise<void> {\n  const configPath = join(homedir(), '.stackmemory');\n\n  // Create base directory structure\n  console.log(chalk.gray('\\nCreating directory structure...'));\n  const dirs = [\n    configPath,\n    join(configPath, 'contexts'),\n    join(configPath, 'projects'),\n    join(configPath, 'worktrees'),\n    join(configPath, 'bin'),\n    join(configPath, 'logs'),\n    join(configPath, 'analytics'),\n  ];\n\n  for (const dir of dirs) {\n    if (!existsSync(dir)) {\n      mkdirSync(dir, { recursive: true });\n    }\n  }\n\n  // Configure git worktree support\n  if (config.enableWorktrees) {\n    console.log(chalk.gray('Configuring worktree support...'));\n    const worktreeManager = WorktreeManager.getInstance();\n    worktreeManager.saveConfig({\n      enabled: true,\n      autoDetect: true,\n      isolateContexts: config.worktreeIsolation,\n      shareGlobalContext: false,\n      syncInterval: 15,\n    });\n\n    // Detect current worktrees\n    const worktrees = worktreeManager.detectWorktrees();\n    if (worktrees.length > 0) {\n      console.log(chalk.green(`  \u2713 Found ${worktrees.length} worktree(s)`));\n      worktrees.forEach((wt) => {\n        console.log(chalk.gray(`    - ${wt.branch} at ${wt.path}`));\n      });\n    }\n  }\n\n  // Scan and organize projects\n  if (config.enableProjects && config.scanProjects) {\n    console.log(chalk.gray('Scanning for projects...'));\n    const projectManager = ProjectManager.getInstance();\n\n    const scanPaths = (config as any).scanPaths || [\n      join(homedir(), 'Dev'),\n      join(homedir(), 'dev'),\n      join(homedir(), 'Projects'),\n      join(homedir(), 'projects'),\n      join(homedir(), 'code'),\n    ];\n\n    await projectManager.scanAndCategorizeAllProjects(\n      scanPaths.filter((p: string) => existsSync(p))\n    );\n\n    const projects = projectManager.getAllProjects();\n    console.log(chalk.green(`  \u2713 Found ${projects.length} project(s)`));\n\n    // Show summary\n    const byType: Record<string, number> = {};\n    projects.forEach((p) => {\n      byType[p.accountType] = (byType[p.accountType] || 0) + 1;\n    });\n\n    Object.entries(byType).forEach(([type, count]) => {\n      console.log(chalk.gray(`    - ${type}: ${count} project(s)`));\n    });\n  }\n\n  // Configure Linear integration\n  if (config.enableLinear && config.linearApiKey) {\n    console.log(chalk.gray('Configuring Linear integration...'));\n    const linearConfig = {\n      apiKey: config.linearApiKey,\n      autoSync: true,\n      syncInterval: 300000, // 5 minutes\n    };\n\n    writeFileSync(\n      join(configPath, 'linear-config.json'),\n      JSON.stringify(linearConfig, null, 2)\n    );\n    console.log(chalk.green('  \u2713 Linear configured'));\n  }\n\n  // Save main configuration\n  const mainConfig = {\n    version: '1.0.0',\n    setupCompleted: new Date().toISOString(),\n    features: {\n      worktrees: config.enableWorktrees,\n      projects: config.enableProjects,\n      linear: config.enableLinear,\n      analytics: config.enableAnalytics,\n    },\n    paths: {\n      default: config.defaultContextPath,\n    },\n    database: {\n      mode: config.storageMode,\n      ...(config.databaseUrl ? { url: config.databaseUrl } : {}),\n    },\n  };\n\n  writeFileSync(\n    join(configPath, 'config.json'),\n    JSON.stringify(mainConfig, null, 2)\n  );\n\n  // If hosted selected, persist a simple env file suggestion\n  if (config.storageMode === 'hosted' && config.databaseUrl) {\n    try {\n      const envFile = join(configPath, 'railway.env');\n      writeFileSync(\n        envFile,\n        `# StackMemory hosted DB\\nDATABASE_URL=${config.databaseUrl}\\n`\n      );\n      console.log(\n        chalk.green(\n          '  \u2713 Saved hosted DB settings to ~/.stackmemory/railway.env'\n        )\n      );\n      console.log(\n        chalk.gray(\n          '    Tip: export DATABASE_URL from this file in your shell profile.'\n        )\n      );\n    } catch (e) {\n      console.log(chalk.yellow('  \u26A0 Could not write hosted DB env file'));\n    }\n  }\n\n  // Create claude-sm symlink for easy access\n  const binPath = '/usr/local/bin/claude-sm';\n  const sourcePath = join(configPath, 'bin', 'stackmemory');\n\n  try {\n    // Create wrapper script\n    const wrapperScript = `#!/bin/bash\n# StackMemory CLI wrapper with worktree support\nCURRENT_DIR=$(pwd)\n\n# Auto-detect worktree if enabled\nif [ -f ~/.stackmemory/worktree-config.json ]; then\n  WORKTREE_ENABLED=$(grep '\"enabled\": true' ~/.stackmemory/worktree-config.json)\n  if [ ! -z \"$WORKTREE_ENABLED\" ]; then\n    # Check if we're in a git worktree\n    if git worktree list &>/dev/null; then\n      export SM_WORKTREE_PATH=\"$CURRENT_DIR\"\n    fi\n  fi\nfi\n\n# Run StackMemory with context\nexec stackmemory \"$@\"\n`;\n\n    writeFileSync(sourcePath, wrapperScript);\n    execFileSync('chmod', ['+x', sourcePath]);\n\n    // Create symlink if it doesn't exist\n    if (!existsSync(binPath)) {\n      execFileSync('ln', ['-s', sourcePath, binPath]);\n      console.log(chalk.green('  \u2713 Created claude-sm command'));\n    }\n  } catch (error: unknown) {\n    console.log(\n      chalk.yellow('  \u26A0 Could not create claude-sm symlink (may need sudo)')\n    );\n  }\n\n  // Create codex-sm symlink for easy access\n  const codexBinPath = '/usr/local/bin/codex-sm';\n  const codexSourcePath = join(configPath, 'bin', 'codex-sm');\n\n  try {\n    // Create Codex wrapper script (based on scripts/codex-wrapper.sh)\n    const codexWrapper = `#!/bin/bash\n# Codex CLI wrapper with StackMemory integration\n# Usage: codex-sm [--auto-sync] [--sync-interval=MINUTES] [args...]\n\n# Flags\nAUTO_SYNC=false\nSYNC_INTERVAL=5\nfor arg in \"$@\"; do\n    case $arg in\n        --auto-sync)\n            AUTO_SYNC=true\n            shift\n            ;;\n        --sync-interval=*)\n            SYNC_INTERVAL=\"\\${arg#*=}\"\n            shift\n            ;;\n    esac\ndone\n\n# Auto-initialize StackMemory if in git repo without it\nif [ -d \".git\" ] && [ ! -d \".stackmemory\" ]; then\n    echo \"\uD83D\uDCE6 Initializing StackMemory for this project...\"\n    # Quiet init (no unsupported flags)\n    stackmemory init >/dev/null 2>&1 || true\nfi\n\n# Load existing context if available\nif [ -d \".stackmemory\" ]; then\n    echo \"\uD83E\uDDE0 Loading StackMemory context...\"\n    stackmemory status --brief 2>/dev/null || true\nfi\n\n# Start Linear auto-sync in background if requested\nSYNC_PID=\"\"\nif [ \"$AUTO_SYNC\" = true ] && [ -n \"$LINEAR_API_KEY\" ]; then\n    echo \"\uD83D\uDD04 Starting Linear auto-sync (${SYNC_INTERVAL}min intervals)...\"\n    (\n        while true; do\n            sleep $((SYNC_INTERVAL * 60))\n            if [ -d \".stackmemory\" ]; then\n                stackmemory linear sync --quiet 2>/dev/null || true\n            fi\n        done\n    ) &\n    SYNC_PID=$!\nfi\n\ncleanup() {\n    echo \"\"\n    echo \"\uD83D\uDCDD Saving StackMemory context...\"\n\n    # Kill auto-sync if running\n    if [ -n \"$SYNC_PID\" ] && kill -0 $SYNC_PID 2>/dev/null; then\n        echo \"\uD83D\uDED1 Stopping auto-sync...\"\n        kill $SYNC_PID 2>/dev/null || true\n    fi\n\n    # Save project status and final sync\n    if [ -d \".stackmemory\" ]; then\n        stackmemory status 2>/dev/null\n        if [ -n \"$LINEAR_API_KEY\" ]; then\n            echo \"\uD83D\uDD04 Final Linear sync...\"\n            stackmemory linear sync 2>/dev/null\n        fi\n        echo \"\u2705 StackMemory context saved\"\n    fi\n}\n\ntrap cleanup EXIT INT TERM\n\n# Run Codex CLI\nif command -v codex &> /dev/null; then\n    codex \"$@\"\nelif command -v codex-cli &> /dev/null; then\n    codex-cli \"$@\"\nelse\n    echo \"\u274C Codex CLI not found. Please install it first.\"\n    echo \"   See: https://github.com/openai/codex-cli\"\n    exit 1\nfi\n`;\n\n    writeFileSync(codexSourcePath, codexWrapper);\n    execFileSync('chmod', ['+x', codexSourcePath]);\n\n    // Create symlink if it doesn't exist\n    if (!existsSync(codexBinPath)) {\n      execFileSync('ln', ['-s', codexSourcePath, codexBinPath]);\n      console.log(chalk.green('  \u2713 Created codex-sm command'));\n    }\n  } catch (error: unknown) {\n    console.log(\n      chalk.yellow('  \u26A0 Could not create codex-sm symlink (may need sudo)')\n    );\n  }\n}\n\nfunction showNextSteps(config: OnboardingConfig): void {\n  console.log(chalk.cyan('\uD83C\uDF89 Next Steps:\\n'));\n\n  console.log('1. Initialize StackMemory in your project:');\n  console.log(chalk.gray('   cd your-project'));\n  console.log(chalk.gray('   stackmemory init\\n'));\n\n  if (config.enableWorktrees) {\n    console.log('2. Create a new worktree:');\n    console.log(\n      chalk.gray(\n        '   git worktree add -b feature/new-feature ../project-feature'\n      )\n    );\n    console.log(chalk.gray('   cd ../project-feature'));\n    console.log(\n      chalk.gray(\n        '   stackmemory status  # Isolated context for this worktree\\n'\n      )\n    );\n  }\n\n  console.log('3. Use with Claude:');\n  console.log(chalk.gray('   claude-sm  # Or use stackmemory directly\\n'));\n\n  console.log('4. Use with Codex:');\n  console.log(chalk.gray('   codex-sm   # Codex + StackMemory integration\\n'));\n\n  if (config.enableLinear) {\n    console.log('5. Sync with Linear:');\n    console.log(chalk.gray('   stackmemory linear sync\\n'));\n  }\n\n  console.log('For more help:');\n  console.log(chalk.gray('   stackmemory --help'));\n  console.log(chalk.gray('   stackmemory projects --help'));\n  if (config.enableWorktrees) {\n    console.log(chalk.gray('   stackmemory worktree --help'));\n  }\n}\n"],
+  "mappings": 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   "names": []
 }

package/dist/src/cli/commands/setup.js

@@ -233,8 +233,7 @@ function createDoctorCommand() {
       });
     }
     const envChecks = [
-      { key: "LINEAR_API_KEY", name: "Linear API Key", optional: true },
-      { key: "TWILIO_ACCOUNT_SID", name: "Twilio Account", optional: true }
+      { key: "LINEAR_API_KEY", name: "Linear API Key", optional: true }
     ];
     for (const check of envChecks) {
       const value = process.env[check.key];

package/dist/src/cli/commands/setup.js.map

@@ -1,7 +1,7 @@
 {
   "version": 3,
   "sources": ["../../../../src/cli/commands/setup.ts"],
-  "sourcesContent": ["/**\n * Setup commands for StackMemory onboarding\n * - setup-mcp: Auto-configure Claude Code MCP integration\n * - doctor: Diagnose common issues\n */\n\nimport { Command } from 'commander';\nimport chalk from 'chalk';\nimport { existsSync, readFileSync, writeFileSync, mkdirSync } from 'fs';\nimport { join } from 'path';\nimport { homedir } from 'os';\nimport { execSync } from 'child_process';\n\n// Claude config paths\nconst CLAUDE_DIR = join(homedir(), '.claude');\nconst CLAUDE_CONFIG_FILE = join(CLAUDE_DIR, 'config.json');\nconst MCP_CONFIG_FILE = join(CLAUDE_DIR, 'stackmemory-mcp.json');\nconst HOOKS_JSON = join(CLAUDE_DIR, 'hooks.json');\n\ninterface DiagnosticResult {\n  name: string;\n  status: 'ok' | 'warn' | 'error';\n  message: string;\n  fix?: string;\n}\n\n/**\n * Create setup-mcp command\n */\nexport function createSetupMCPCommand(): Command {\n  return new Command('setup-mcp')\n    .description('Auto-configure Claude Code MCP integration')\n    .option('--dry-run', 'Show what would be configured without making changes')\n    .option('--reset', 'Reset MCP configuration to defaults')\n    .action(async (options) => {\n      console.log(chalk.cyan('\\nStackMemory MCP Setup\\n'));\n\n      if (options.dryRun) {\n        console.log(chalk.yellow('[DRY RUN] No changes will be made.\\n'));\n      }\n\n      // Step 1: Ensure Claude directory exists\n      if (!existsSync(CLAUDE_DIR)) {\n        if (options.dryRun) {\n          console.log(chalk.gray(`Would create: ${CLAUDE_DIR}`));\n        } else {\n          mkdirSync(CLAUDE_DIR, { recursive: true });\n          console.log(chalk.green('[OK]') + ' Created ~/.claude directory');\n        }\n      }\n\n      // Step 2: Create MCP server configuration\n      const mcpConfig = {\n        mcpServers: {\n          stackmemory: {\n            command: 'stackmemory',\n            args: ['mcp-server'],\n            env: {\n              NODE_ENV: 'production',\n            },\n          },\n        },\n      };\n\n      if (options.dryRun) {\n        console.log(\n          chalk.gray(`Would write MCP config to: ${MCP_CONFIG_FILE}`)\n        );\n        console.log(chalk.gray(JSON.stringify(mcpConfig, null, 2)));\n      } else {\n        writeFileSync(MCP_CONFIG_FILE, JSON.stringify(mcpConfig, null, 2));\n        console.log(chalk.green('[OK]') + ' Created MCP server configuration');\n      }\n\n      // Step 3: Update Claude config.json to reference MCP config\n      let claudeConfig: Record<string, unknown> = {};\n      if (existsSync(CLAUDE_CONFIG_FILE)) {\n        try {\n          claudeConfig = JSON.parse(readFileSync(CLAUDE_CONFIG_FILE, 'utf8'));\n        } catch {\n          console.log(\n            chalk.yellow('[WARN]') +\n              ' Could not parse existing config.json, creating new'\n          );\n        }\n      }\n\n      // Ensure mcp.configFiles array includes our config\n      if (!claudeConfig.mcp) {\n        claudeConfig.mcp = {};\n      }\n      const mcp = claudeConfig.mcp as Record<string, unknown>;\n      if (!mcp.configFiles) {\n        mcp.configFiles = [];\n      }\n      const configFiles = mcp.configFiles as string[];\n      if (!configFiles.includes(MCP_CONFIG_FILE)) {\n        configFiles.push(MCP_CONFIG_FILE);\n      }\n\n      if (options.dryRun) {\n        console.log(chalk.gray(`Would update: ${CLAUDE_CONFIG_FILE}`));\n      } else {\n        writeFileSync(\n          CLAUDE_CONFIG_FILE,\n          JSON.stringify(claudeConfig, null, 2)\n        );\n        console.log(chalk.green('[OK]') + ' Updated Claude config.json');\n      }\n\n      // Step 4: Validate configuration\n      console.log(chalk.cyan('\\nValidating configuration...'));\n\n      // Check stackmemory command is available\n      try {\n        execSync('stackmemory --version', { stdio: 'pipe' });\n        console.log(chalk.green('[OK]') + ' stackmemory CLI is installed');\n      } catch {\n        console.log(chalk.yellow('[WARN]') + ' stackmemory CLI not in PATH');\n        console.log(chalk.gray('  You may need to restart your terminal'));\n      }\n\n      // Check Claude Code is available\n      try {\n        execSync('claude --version', { stdio: 'pipe' });\n        console.log(chalk.green('[OK]') + ' Claude Code is installed');\n      } catch {\n        console.log(chalk.yellow('[WARN]') + ' Claude Code not found');\n        console.log(chalk.gray('  Install from: https://claude.ai/code'));\n      }\n\n      // Final instructions\n      if (!options.dryRun) {\n        console.log(chalk.green('\\nMCP setup complete!'));\n        console.log(chalk.cyan('\\nNext steps:'));\n        console.log(chalk.white('  1. Restart Claude Code'));\n        console.log(\n          chalk.white(\n            '  2. The StackMemory MCP tools will be available automatically'\n          )\n        );\n        console.log(\n          chalk.gray(\n            '\\nTo verify: Run \"stackmemory doctor\" to check all integrations'\n          )\n        );\n      }\n    });\n}\n\n/**\n * Create doctor command for diagnostics\n */\nexport function createDoctorCommand(): Command {\n  return new Command('doctor')\n    .description('Diagnose StackMemory configuration and common issues')\n    .option('--fix', 'Attempt to automatically fix issues')\n    .action(async (options) => {\n      console.log(chalk.cyan('\\nStackMemory Doctor\\n'));\n      console.log(chalk.gray('Checking configuration and dependencies...\\n'));\n\n      const results: DiagnosticResult[] = [];\n\n      // 1. Check project initialization\n      const projectDir = join(process.cwd(), '.stackmemory');\n      const dbPath = join(projectDir, 'context.db');\n      if (existsSync(dbPath)) {\n        results.push({\n          name: 'Project Initialization',\n          status: 'ok',\n          message: 'StackMemory is initialized in this project',\n        });\n      } else if (existsSync(projectDir)) {\n        results.push({\n          name: 'Project Initialization',\n          status: 'warn',\n          message: '.stackmemory directory exists but database not found',\n          fix: 'Run: stackmemory init',\n        });\n      } else {\n        results.push({\n          name: 'Project Initialization',\n          status: 'error',\n          message: 'StackMemory not initialized in this project',\n          fix: 'Run: stackmemory init',\n        });\n      }\n\n      // 2. Check database integrity\n      if (existsSync(dbPath)) {\n        try {\n          const Database = (await import('better-sqlite3')).default;\n          const db = new Database(dbPath, { readonly: true });\n          const tables = db\n            .prepare(\"SELECT name FROM sqlite_master WHERE type='table'\")\n            .all() as { name: string }[];\n          db.close();\n\n          const hasFrames = tables.some((t) => t.name === 'frames');\n          if (hasFrames) {\n            results.push({\n              name: 'Database Integrity',\n              status: 'ok',\n              message: `Database has ${tables.length} tables`,\n            });\n          } else {\n            results.push({\n              name: 'Database Integrity',\n              status: 'warn',\n              message: 'Database exists but missing expected tables',\n              fix: 'Run: stackmemory init --interactive',\n            });\n          }\n        } catch (error) {\n          results.push({\n            name: 'Database Integrity',\n            status: 'error',\n            message: `Database error: ${(error as Error).message}`,\n            fix: 'Remove .stackmemory/context.db and run: stackmemory init',\n          });\n        }\n      }\n\n      // 3. Check MCP configuration\n      if (existsSync(MCP_CONFIG_FILE)) {\n        try {\n          const config = JSON.parse(readFileSync(MCP_CONFIG_FILE, 'utf8'));\n          if (config.mcpServers?.stackmemory) {\n            results.push({\n              name: 'MCP Configuration',\n              status: 'ok',\n              message: 'MCP server configured',\n            });\n          } else {\n            results.push({\n              name: 'MCP Configuration',\n              status: 'warn',\n              message:\n                'MCP config file exists but stackmemory server not configured',\n              fix: 'Run: stackmemory setup-mcp',\n            });\n          }\n        } catch {\n          results.push({\n            name: 'MCP Configuration',\n            status: 'error',\n            message: 'Invalid MCP configuration file',\n            fix: 'Run: stackmemory setup-mcp --reset',\n          });\n        }\n      } else {\n        results.push({\n          name: 'MCP Configuration',\n          status: 'warn',\n          message: 'MCP not configured for Claude Code',\n          fix: 'Run: stackmemory setup-mcp',\n        });\n      }\n\n      // 4. Check Claude hooks\n      if (existsSync(HOOKS_JSON)) {\n        try {\n          const hooks = JSON.parse(readFileSync(HOOKS_JSON, 'utf8'));\n          const hasTraceHook = !!hooks['tool-use-approval'];\n          if (hasTraceHook) {\n            results.push({\n              name: 'Claude Hooks',\n              status: 'ok',\n              message: 'Tool tracing hook installed',\n            });\n          } else {\n            results.push({\n              name: 'Claude Hooks',\n              status: 'warn',\n              message: 'Hooks file exists but tracing not configured',\n              fix: 'Run: stackmemory hooks install',\n            });\n          }\n        } catch {\n          results.push({\n            name: 'Claude Hooks',\n            status: 'warn',\n            message: 'Could not read hooks.json',\n          });\n        }\n      } else {\n        results.push({\n          name: 'Claude Hooks',\n          status: 'warn',\n          message: 'Claude hooks not installed (optional)',\n          fix: 'Run: stackmemory hooks install',\n        });\n      }\n\n      // 5. Check environment variables\n      const envChecks = [\n        { key: 'LINEAR_API_KEY', name: 'Linear API Key', optional: true },\n        { key: 'TWILIO_ACCOUNT_SID', name: 'Twilio Account', optional: true },\n      ];\n\n      for (const check of envChecks) {\n        const value = process.env[check.key];\n        if (value) {\n          results.push({\n            name: check.name,\n            status: 'ok',\n            message: 'Environment variable set',\n          });\n        } else if (!check.optional) {\n          results.push({\n            name: check.name,\n            status: 'error',\n            message: 'Required environment variable not set',\n            fix: `Set ${check.key} in your .env file`,\n          });\n        }\n        // Skip optional env vars that aren't set\n      }\n\n      // 6. Check file permissions\n      const homeStackmemory = join(homedir(), '.stackmemory');\n      if (existsSync(homeStackmemory)) {\n        try {\n          const testFile = join(homeStackmemory, '.write-test');\n          writeFileSync(testFile, 'test');\n          const { unlinkSync } = await import('fs');\n          unlinkSync(testFile);\n          results.push({\n            name: 'File Permissions',\n            status: 'ok',\n            message: '~/.stackmemory is writable',\n          });\n        } catch {\n          results.push({\n            name: 'File Permissions',\n            status: 'error',\n            message: '~/.stackmemory is not writable',\n            fix: 'Run: chmod 700 ~/.stackmemory',\n          });\n        }\n      }\n\n      // Display results\n      let hasErrors = false;\n      let hasWarnings = false;\n\n      for (const result of results) {\n        const icon =\n          result.status === 'ok'\n            ? chalk.green('[OK]')\n            : result.status === 'warn'\n              ? chalk.yellow('[WARN]')\n              : chalk.red('[ERROR]');\n\n        console.log(`${icon} ${result.name}`);\n        console.log(chalk.gray(`    ${result.message}`));\n\n        if (result.fix) {\n          console.log(chalk.cyan(`    Fix: ${result.fix}`));\n\n          if (options.fix && result.status !== 'ok') {\n            // Auto-fix logic for specific issues\n            if (result.fix.includes('stackmemory setup-mcp')) {\n              console.log(chalk.gray('    Attempting auto-fix...'));\n              try {\n                execSync('stackmemory setup-mcp', { stdio: 'inherit' });\n              } catch {\n                console.log(chalk.red('    Auto-fix failed'));\n              }\n            }\n          }\n        }\n\n        if (result.status === 'error') hasErrors = true;\n        if (result.status === 'warn') hasWarnings = true;\n      }\n\n      // Summary\n      console.log('');\n      if (hasErrors) {\n        console.log(\n          chalk.red('Some issues need attention. Run suggested fixes above.')\n        );\n        process.exit(1);\n      } else if (hasWarnings) {\n        console.log(\n          chalk.yellow(\n            'StackMemory is working but some optional features are not configured.'\n          )\n        );\n      } else {\n        console.log(\n          chalk.green('All checks passed! StackMemory is properly configured.')\n        );\n      }\n    });\n}\n\n/**\n * Create setup-plugins command\n */\nexport function createSetupPluginsCommand(): Command {\n  const cmd = new Command('setup-plugins');\n\n  cmd\n    .description('Install StackMemory plugins for Claude Code')\n    .option('--force', 'Overwrite existing plugins')\n    .action(async (options) => {\n      console.log(\n        chalk.cyan('Installing StackMemory plugins for Claude Code...\\n')\n      );\n\n      const pluginsDir = join(CLAUDE_DIR, 'plugins');\n\n      // Ensure plugins directory exists\n      if (!existsSync(pluginsDir)) {\n        mkdirSync(pluginsDir, { recursive: true });\n        console.log(chalk.gray(`Created: ${pluginsDir}`));\n      }\n\n      // Find the plugins source directory\n      // Check multiple locations: local dev, global npm, local npm\n      const possiblePaths = [\n        join(process.cwd(), 'plugins'),\n        join(__dirname, '..', '..', '..', 'plugins'),\n        join(homedir(), '.stackmemory', 'plugins'),\n      ];\n\n      // Try to find via npm root\n      try {\n        const globalRoot = execSync('npm root -g', {\n          encoding: 'utf-8',\n        }).trim();\n        possiblePaths.push(\n          join(globalRoot, '@stackmemoryai', 'stackmemory', 'plugins')\n        );\n      } catch {\n        // npm not available or failed\n      }\n\n      let sourcePluginsDir: string | undefined;\n      for (const p of possiblePaths) {\n        if (existsSync(p) && existsSync(join(p, 'stackmemory'))) {\n          sourcePluginsDir = p;\n          break;\n        }\n      }\n\n      if (!sourcePluginsDir) {\n        console.log(chalk.red('Could not find StackMemory plugins directory'));\n        console.log(chalk.gray('Searched:'));\n        possiblePaths.forEach((p) => console.log(chalk.gray(`  - ${p}`)));\n        process.exit(1);\n      }\n\n      console.log(chalk.gray(`Source: ${sourcePluginsDir}\\n`));\n\n      // List of plugins to install\n      const plugins = ['stackmemory', 'ralph-wiggum'];\n      let installed = 0;\n\n      for (const plugin of plugins) {\n        const sourcePath = join(sourcePluginsDir, plugin);\n        const targetPath = join(pluginsDir, plugin);\n\n        if (!existsSync(sourcePath)) {\n          console.log(chalk.yellow(`  [SKIP] ${plugin} - not found in source`));\n          continue;\n        }\n\n        if (existsSync(targetPath)) {\n          if (options.force) {\n            // Remove existing\n            try {\n              execSync(`rm -rf \"${targetPath}\"`, { encoding: 'utf-8' });\n            } catch {\n              console.log(\n                chalk.red(`  [ERROR] ${plugin} - could not remove existing`)\n              );\n              continue;\n            }\n          } else {\n            console.log(\n              chalk.gray(`  [EXISTS] ${plugin} - use --force to overwrite`)\n            );\n            continue;\n          }\n        }\n\n        // Create symlink\n        try {\n          execSync(`ln -s \"${sourcePath}\" \"${targetPath}\"`, {\n            encoding: 'utf-8',\n          });\n          console.log(chalk.green(`  [OK] ${plugin}`));\n          installed++;\n        } catch (err) {\n          console.log(\n            chalk.red(`  [ERROR] ${plugin} - ${(err as Error).message}`)\n          );\n        }\n      }\n\n      console.log('');\n      if (installed > 0) {\n        console.log(chalk.green(`Installed ${installed} plugin(s)`));\n        console.log(chalk.gray('\\nAvailable commands in Claude Code:'));\n        console.log(\n          chalk.white('  /sm-status    ') +\n            chalk.gray('Show StackMemory status')\n        );\n        console.log(\n          chalk.white('  /sm-capture   ') +\n            chalk.gray('Capture work for handoff')\n        );\n        console.log(\n          chalk.white('  /sm-restore   ') +\n            chalk.gray('Restore from last handoff')\n        );\n        console.log(\n          chalk.white('  /sm-decision  ') + chalk.gray('Record a decision')\n        );\n        console.log(\n          chalk.white('  /sm-help      ') + chalk.gray('Show all commands')\n        );\n        console.log(\n          chalk.white('  /ralph-loop   ') +\n            chalk.gray('Start Ralph iteration loop')\n        );\n      } else {\n        console.log(chalk.yellow('No plugins installed'));\n      }\n    });\n\n  return cmd;\n}\n\n/**\n * Create setup-remote command for remote MCP server auto-start\n */\nexport function createSetupRemoteCommand(): Command {\n  const cmd = new Command('setup-remote');\n\n  cmd\n    .description('Configure remote MCP server to auto-start on boot')\n    .option('--port <number>', 'Port for remote server', '3847')\n    .option('--project <path>', 'Project root directory')\n    .option('--uninstall', 'Remove the auto-start service')\n    .option('--status', 'Check service status')\n    .action(async (options) => {\n      const home = homedir();\n      const platform = process.platform;\n\n      // Service configuration\n      const serviceName =\n        platform === 'darwin'\n          ? 'com.stackmemory.remote-mcp'\n          : 'stackmemory-remote-mcp';\n      const serviceDir =\n        platform === 'darwin'\n          ? join(home, 'Library', 'LaunchAgents')\n          : join(home, '.config', 'systemd', 'user');\n      const serviceFile =\n        platform === 'darwin'\n          ? join(serviceDir, `${serviceName}.plist`)\n          : join(serviceDir, `${serviceName}.service`);\n      const logDir = join(home, '.stackmemory', 'logs');\n      const pidFile = join(home, '.stackmemory', 'remote-mcp.pid');\n\n      // Handle status check\n      if (options.status) {\n        console.log(chalk.cyan('\\nRemote MCP Server Status\\n'));\n\n        if (platform === 'darwin') {\n          try {\n            const result = execSync(\n              `launchctl list | grep ${serviceName} || true`,\n              { encoding: 'utf-8' }\n            );\n            if (result.includes(serviceName)) {\n              console.log(chalk.green('[RUNNING]') + ' Service is active');\n              try {\n                const health = execSync(\n                  `curl -s http://localhost:${options.port}/health 2>/dev/null`,\n                  { encoding: 'utf-8' }\n                );\n                const data = JSON.parse(health);\n                console.log(chalk.gray(`  Project: ${data.projectId}`));\n                console.log(\n                  chalk.gray(`  URL: http://localhost:${options.port}/sse`)\n                );\n              } catch {\n                console.log(\n                  chalk.yellow('  Server not responding to health check')\n                );\n              }\n            } else {\n              console.log(chalk.yellow('[STOPPED]') + ' Service not running');\n            }\n          } catch {\n            console.log(chalk.yellow('[UNKNOWN]') + ' Could not check status');\n          }\n        } else if (platform === 'linux') {\n          try {\n            execSync(`systemctl --user is-active ${serviceName}`, {\n              stdio: 'pipe',\n            });\n            console.log(chalk.green('[RUNNING]') + ' Service is active');\n          } catch {\n            console.log(chalk.yellow('[STOPPED]') + ' Service not running');\n          }\n        }\n\n        console.log(chalk.gray(`\\nService file: ${serviceFile}`));\n        console.log(chalk.gray(`Logs: ${logDir}/remote-mcp.log`));\n        return;\n      }\n\n      // Handle uninstall\n      if (options.uninstall) {\n        console.log(chalk.cyan('\\nUninstalling Remote MCP Server Service\\n'));\n\n        if (platform === 'darwin') {\n          try {\n            execSync(`launchctl unload \"${serviceFile}\"`, { stdio: 'pipe' });\n            console.log(chalk.green('[OK]') + ' Service unloaded');\n          } catch {\n            console.log(chalk.gray('[SKIP]') + ' Service was not loaded');\n          }\n\n          if (existsSync(serviceFile)) {\n            const fs = await import('fs/promises');\n            await fs.unlink(serviceFile);\n            console.log(chalk.green('[OK]') + ' Service file removed');\n          }\n        } else if (platform === 'linux') {\n          try {\n            execSync(`systemctl --user stop ${serviceName}`, { stdio: 'pipe' });\n            execSync(`systemctl --user disable ${serviceName}`, {\n              stdio: 'pipe',\n            });\n            console.log(chalk.green('[OK]') + ' Service stopped and disabled');\n          } catch {\n            console.log(chalk.gray('[SKIP]') + ' Service was not running');\n          }\n\n          if (existsSync(serviceFile)) {\n            const fs = await import('fs/promises');\n            await fs.unlink(serviceFile);\n            execSync('systemctl --user daemon-reload', { stdio: 'pipe' });\n            console.log(chalk.green('[OK]') + ' Service file removed');\n          }\n        }\n\n        console.log(chalk.green('\\nRemote MCP service uninstalled'));\n        return;\n      }\n\n      // Install service\n      console.log(chalk.cyan('\\nSetting up Remote MCP Server Auto-Start\\n'));\n\n      if (platform !== 'darwin' && platform !== 'linux') {\n        console.log(\n          chalk.red('Auto-start is only supported on macOS and Linux')\n        );\n        console.log(chalk.gray('\\nManual start: stackmemory mcp-remote'));\n        return;\n      }\n\n      // Create directories\n      if (!existsSync(serviceDir)) {\n        mkdirSync(serviceDir, { recursive: true });\n      }\n      if (!existsSync(logDir)) {\n        mkdirSync(logDir, { recursive: true });\n      }\n\n      // Find node and stackmemory paths\n      let nodePath: string;\n      try {\n        nodePath = execSync('which node', { encoding: 'utf-8' }).trim();\n      } catch {\n        nodePath = '/usr/local/bin/node';\n      }\n\n      // Find stackmemory CLI path\n      let stackmemoryPath: string;\n      try {\n        stackmemoryPath = execSync('which stackmemory', {\n          encoding: 'utf-8',\n        }).trim();\n      } catch {\n        // Try npm global path\n        try {\n          const npmRoot = execSync('npm root -g', { encoding: 'utf-8' }).trim();\n          stackmemoryPath = join(\n            npmRoot,\n            '@stackmemoryai',\n            'stackmemory',\n            'dist',\n            'cli',\n            'index.js'\n          );\n        } catch {\n          stackmemoryPath = 'npx stackmemory';\n        }\n      }\n\n      const projectPath = options.project || home;\n      const port = options.port || '3847';\n\n      if (platform === 'darwin') {\n        // Generate macOS launchd plist\n        const plist = `<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n<!DOCTYPE plist PUBLIC \"-//Apple//DTD PLIST 1.0//EN\" \"http://www.apple.com/DTDs/PropertyList-1.0.dtd\">\n<plist version=\"1.0\">\n<dict>\n    <key>Label</key>\n    <string>${serviceName}</string>\n\n    <key>ProgramArguments</key>\n    <array>\n        <string>${stackmemoryPath.includes('npx') ? 'npx' : nodePath}</string>\n        ${stackmemoryPath.includes('npx') ? '<string>stackmemory</string>' : `<string>${stackmemoryPath}</string>`}\n        <string>mcp-remote</string>\n        <string>--port</string>\n        <string>${port}</string>\n        <string>--project</string>\n        <string>${projectPath}</string>\n    </array>\n\n    <key>RunAtLoad</key>\n    <true/>\n\n    <key>KeepAlive</key>\n    <dict>\n        <key>SuccessfulExit</key>\n        <false/>\n    </dict>\n\n    <key>WorkingDirectory</key>\n    <string>${projectPath}</string>\n\n    <key>StandardOutPath</key>\n    <string>${logDir}/remote-mcp.log</string>\n\n    <key>StandardErrorPath</key>\n    <string>${logDir}/remote-mcp.error.log</string>\n\n    <key>EnvironmentVariables</key>\n    <dict>\n        <key>HOME</key>\n        <string>${home}</string>\n        <key>PATH</key>\n        <string>/usr/local/bin:/opt/homebrew/bin:/usr/bin:/bin</string>\n        <key>NODE_ENV</key>\n        <string>production</string>\n    </dict>\n\n    <key>ThrottleInterval</key>\n    <integer>10</integer>\n</dict>\n</plist>`;\n\n        writeFileSync(serviceFile, plist);\n        console.log(chalk.green('[OK]') + ' Created launchd service file');\n\n        // Unload if already loaded\n        try {\n          execSync(`launchctl unload \"${serviceFile}\" 2>/dev/null`, {\n            stdio: 'pipe',\n          });\n        } catch {\n          // Not loaded, ignore\n        }\n\n        // Load the service\n        try {\n          execSync(`launchctl load -w \"${serviceFile}\"`, { stdio: 'pipe' });\n          console.log(chalk.green('[OK]') + ' Service loaded and started');\n        } catch (err) {\n          console.log(chalk.red('[ERROR]') + ` Failed to load service: ${err}`);\n          return;\n        }\n      } else if (platform === 'linux') {\n        // Generate systemd service\n        const service = `[Unit]\nDescription=StackMemory Remote MCP Server\nDocumentation=https://github.com/stackmemoryai/stackmemory\nAfter=network.target\n\n[Service]\nType=simple\nExecStart=${stackmemoryPath.includes('npx') ? 'npx stackmemory' : `${nodePath} ${stackmemoryPath}`} mcp-remote --port ${port} --project ${projectPath}\nRestart=on-failure\nRestartSec=10\nWorkingDirectory=${projectPath}\n\nEnvironment=HOME=${home}\nEnvironment=PATH=/usr/local/bin:/usr/bin:/bin\nEnvironment=NODE_ENV=production\n\nStandardOutput=append:${logDir}/remote-mcp.log\nStandardError=append:${logDir}/remote-mcp.error.log\n\n[Install]\nWantedBy=default.target`;\n\n        writeFileSync(serviceFile, service);\n        console.log(chalk.green('[OK]') + ' Created systemd service file');\n\n        try {\n          execSync('systemctl --user daemon-reload', { stdio: 'pipe' });\n          execSync(`systemctl --user enable ${serviceName}`, { stdio: 'pipe' });\n          execSync(`systemctl --user start ${serviceName}`, { stdio: 'pipe' });\n          console.log(chalk.green('[OK]') + ' Service enabled and started');\n        } catch (err) {\n          console.log(\n            chalk.red('[ERROR]') + ` Failed to start service: ${err}`\n          );\n          return;\n        }\n      }\n\n      // Verify it's running\n      console.log(chalk.cyan('\\nVerifying server...\\n'));\n      await new Promise((resolve) => setTimeout(resolve, 2000));\n\n      try {\n        const health = execSync(\n          `curl -s http://localhost:${port}/health 2>/dev/null`,\n          { encoding: 'utf-8' }\n        );\n        const data = JSON.parse(health);\n        console.log(chalk.green('[OK]') + ' Server is running');\n        console.log(chalk.gray(`  Project: ${data.projectId}`));\n      } catch {\n        console.log(\n          chalk.yellow('[WARN]') +\n            ' Server not responding yet (may still be starting)'\n        );\n      }\n\n      console.log(\n        chalk.green('\\nRemote MCP Server configured for auto-start!')\n      );\n      console.log(chalk.cyan('\\nConnection info:'));\n      console.log(chalk.white(`  URL: http://localhost:${port}/sse`));\n      console.log(chalk.white(`  Health: http://localhost:${port}/health`));\n      console.log(chalk.gray(`\\nLogs: ${logDir}/remote-mcp.log`));\n      console.log(chalk.gray(`Service: ${serviceFile}`));\n      console.log(chalk.cyan('\\nFor external access (ngrok):'));\n      console.log(chalk.white(`  ngrok http ${port}`));\n      console.log(chalk.gray('  Then use the ngrok URL + /sse in Claude.ai'));\n    });\n\n  return cmd;\n}\n\n/**\n * Register setup commands\n */\nexport function registerSetupCommands(program: Command): void {\n  program.addCommand(createSetupMCPCommand());\n  program.addCommand(createDoctorCommand());\n  program.addCommand(createSetupPluginsCommand());\n  program.addCommand(createSetupRemoteCommand());\n}\n"],
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+  "sourcesContent": ["/**\n * Setup commands for StackMemory onboarding\n * - setup-mcp: Auto-configure Claude Code MCP integration\n * - doctor: Diagnose common issues\n */\n\nimport { Command } from 'commander';\nimport chalk from 'chalk';\nimport { existsSync, readFileSync, writeFileSync, mkdirSync } from 'fs';\nimport { join } from 'path';\nimport { homedir } from 'os';\nimport { execSync } from 'child_process';\n\n// Claude config paths\nconst CLAUDE_DIR = join(homedir(), '.claude');\nconst CLAUDE_CONFIG_FILE = join(CLAUDE_DIR, 'config.json');\nconst MCP_CONFIG_FILE = join(CLAUDE_DIR, 'stackmemory-mcp.json');\nconst HOOKS_JSON = join(CLAUDE_DIR, 'hooks.json');\n\ninterface DiagnosticResult {\n  name: string;\n  status: 'ok' | 'warn' | 'error';\n  message: string;\n  fix?: string;\n}\n\n/**\n * Create setup-mcp command\n */\nexport function createSetupMCPCommand(): Command {\n  return new Command('setup-mcp')\n    .description('Auto-configure Claude Code MCP integration')\n    .option('--dry-run', 'Show what would be configured without making changes')\n    .option('--reset', 'Reset MCP configuration to defaults')\n    .action(async (options) => {\n      console.log(chalk.cyan('\\nStackMemory MCP Setup\\n'));\n\n      if (options.dryRun) {\n        console.log(chalk.yellow('[DRY RUN] No changes will be made.\\n'));\n      }\n\n      // Step 1: Ensure Claude directory exists\n      if (!existsSync(CLAUDE_DIR)) {\n        if (options.dryRun) {\n          console.log(chalk.gray(`Would create: ${CLAUDE_DIR}`));\n        } else {\n          mkdirSync(CLAUDE_DIR, { recursive: true });\n          console.log(chalk.green('[OK]') + ' Created ~/.claude directory');\n        }\n      }\n\n      // Step 2: Create MCP server configuration\n      const mcpConfig = {\n        mcpServers: {\n          stackmemory: {\n            command: 'stackmemory',\n            args: ['mcp-server'],\n            env: {\n              NODE_ENV: 'production',\n            },\n          },\n        },\n      };\n\n      if (options.dryRun) {\n        console.log(\n          chalk.gray(`Would write MCP config to: ${MCP_CONFIG_FILE}`)\n        );\n        console.log(chalk.gray(JSON.stringify(mcpConfig, null, 2)));\n      } else {\n        writeFileSync(MCP_CONFIG_FILE, JSON.stringify(mcpConfig, null, 2));\n        console.log(chalk.green('[OK]') + ' Created MCP server configuration');\n      }\n\n      // Step 3: Update Claude config.json to reference MCP config\n      let claudeConfig: Record<string, unknown> = {};\n      if (existsSync(CLAUDE_CONFIG_FILE)) {\n        try {\n          claudeConfig = JSON.parse(readFileSync(CLAUDE_CONFIG_FILE, 'utf8'));\n        } catch {\n          console.log(\n            chalk.yellow('[WARN]') +\n              ' Could not parse existing config.json, creating new'\n          );\n        }\n      }\n\n      // Ensure mcp.configFiles array includes our config\n      if (!claudeConfig.mcp) {\n        claudeConfig.mcp = {};\n      }\n      const mcp = claudeConfig.mcp as Record<string, unknown>;\n      if (!mcp.configFiles) {\n        mcp.configFiles = [];\n      }\n      const configFiles = mcp.configFiles as string[];\n      if (!configFiles.includes(MCP_CONFIG_FILE)) {\n        configFiles.push(MCP_CONFIG_FILE);\n      }\n\n      if (options.dryRun) {\n        console.log(chalk.gray(`Would update: ${CLAUDE_CONFIG_FILE}`));\n      } else {\n        writeFileSync(\n          CLAUDE_CONFIG_FILE,\n          JSON.stringify(claudeConfig, null, 2)\n        );\n        console.log(chalk.green('[OK]') + ' Updated Claude config.json');\n      }\n\n      // Step 4: Validate configuration\n      console.log(chalk.cyan('\\nValidating configuration...'));\n\n      // Check stackmemory command is available\n      try {\n        execSync('stackmemory --version', { stdio: 'pipe' });\n        console.log(chalk.green('[OK]') + ' stackmemory CLI is installed');\n      } catch {\n        console.log(chalk.yellow('[WARN]') + ' stackmemory CLI not in PATH');\n        console.log(chalk.gray('  You may need to restart your terminal'));\n      }\n\n      // Check Claude Code is available\n      try {\n        execSync('claude --version', { stdio: 'pipe' });\n        console.log(chalk.green('[OK]') + ' Claude Code is installed');\n      } catch {\n        console.log(chalk.yellow('[WARN]') + ' Claude Code not found');\n        console.log(chalk.gray('  Install from: https://claude.ai/code'));\n      }\n\n      // Final instructions\n      if (!options.dryRun) {\n        console.log(chalk.green('\\nMCP setup complete!'));\n        console.log(chalk.cyan('\\nNext steps:'));\n        console.log(chalk.white('  1. Restart Claude Code'));\n        console.log(\n          chalk.white(\n            '  2. The StackMemory MCP tools will be available automatically'\n          )\n        );\n        console.log(\n          chalk.gray(\n            '\\nTo verify: Run \"stackmemory doctor\" to check all integrations'\n          )\n        );\n      }\n    });\n}\n\n/**\n * Create doctor command for diagnostics\n */\nexport function createDoctorCommand(): Command {\n  return new Command('doctor')\n    .description('Diagnose StackMemory configuration and common issues')\n    .option('--fix', 'Attempt to automatically fix issues')\n    .action(async (options) => {\n      console.log(chalk.cyan('\\nStackMemory Doctor\\n'));\n      console.log(chalk.gray('Checking configuration and dependencies...\\n'));\n\n      const results: DiagnosticResult[] = [];\n\n      // 1. Check project initialization\n      const projectDir = join(process.cwd(), '.stackmemory');\n      const dbPath = join(projectDir, 'context.db');\n      if (existsSync(dbPath)) {\n        results.push({\n          name: 'Project Initialization',\n          status: 'ok',\n          message: 'StackMemory is initialized in this project',\n        });\n      } else if (existsSync(projectDir)) {\n        results.push({\n          name: 'Project Initialization',\n          status: 'warn',\n          message: '.stackmemory directory exists but database not found',\n          fix: 'Run: stackmemory init',\n        });\n      } else {\n        results.push({\n          name: 'Project Initialization',\n          status: 'error',\n          message: 'StackMemory not initialized in this project',\n          fix: 'Run: stackmemory init',\n        });\n      }\n\n      // 2. Check database integrity\n      if (existsSync(dbPath)) {\n        try {\n          const Database = (await import('better-sqlite3')).default;\n          const db = new Database(dbPath, { readonly: true });\n          const tables = db\n            .prepare(\"SELECT name FROM sqlite_master WHERE type='table'\")\n            .all() as { name: string }[];\n          db.close();\n\n          const hasFrames = tables.some((t) => t.name === 'frames');\n          if (hasFrames) {\n            results.push({\n              name: 'Database Integrity',\n              status: 'ok',\n              message: `Database has ${tables.length} tables`,\n            });\n          } else {\n            results.push({\n              name: 'Database Integrity',\n              status: 'warn',\n              message: 'Database exists but missing expected tables',\n              fix: 'Run: stackmemory init --interactive',\n            });\n          }\n        } catch (error) {\n          results.push({\n            name: 'Database Integrity',\n            status: 'error',\n            message: `Database error: ${(error as Error).message}`,\n            fix: 'Remove .stackmemory/context.db and run: stackmemory init',\n          });\n        }\n      }\n\n      // 3. Check MCP configuration\n      if (existsSync(MCP_CONFIG_FILE)) {\n        try {\n          const config = JSON.parse(readFileSync(MCP_CONFIG_FILE, 'utf8'));\n          if (config.mcpServers?.stackmemory) {\n            results.push({\n              name: 'MCP Configuration',\n              status: 'ok',\n              message: 'MCP server configured',\n            });\n          } else {\n            results.push({\n              name: 'MCP Configuration',\n              status: 'warn',\n              message:\n                'MCP config file exists but stackmemory server not configured',\n              fix: 'Run: stackmemory setup-mcp',\n            });\n          }\n        } catch {\n          results.push({\n            name: 'MCP Configuration',\n            status: 'error',\n            message: 'Invalid MCP configuration file',\n            fix: 'Run: stackmemory setup-mcp --reset',\n          });\n        }\n      } else {\n        results.push({\n          name: 'MCP Configuration',\n          status: 'warn',\n          message: 'MCP not configured for Claude Code',\n          fix: 'Run: stackmemory setup-mcp',\n        });\n      }\n\n      // 4. Check Claude hooks\n      if (existsSync(HOOKS_JSON)) {\n        try {\n          const hooks = JSON.parse(readFileSync(HOOKS_JSON, 'utf8'));\n          const hasTraceHook = !!hooks['tool-use-approval'];\n          if (hasTraceHook) {\n            results.push({\n              name: 'Claude Hooks',\n              status: 'ok',\n              message: 'Tool tracing hook installed',\n            });\n          } else {\n            results.push({\n              name: 'Claude Hooks',\n              status: 'warn',\n              message: 'Hooks file exists but tracing not configured',\n              fix: 'Run: stackmemory hooks install',\n            });\n          }\n        } catch {\n          results.push({\n            name: 'Claude Hooks',\n            status: 'warn',\n            message: 'Could not read hooks.json',\n          });\n        }\n      } else {\n        results.push({\n          name: 'Claude Hooks',\n          status: 'warn',\n          message: 'Claude hooks not installed (optional)',\n          fix: 'Run: stackmemory hooks install',\n        });\n      }\n\n      // 5. Check environment variables\n      const envChecks = [\n        { key: 'LINEAR_API_KEY', name: 'Linear API Key', optional: true },\n      ];\n\n      for (const check of envChecks) {\n        const value = process.env[check.key];\n        if (value) {\n          results.push({\n            name: check.name,\n            status: 'ok',\n            message: 'Environment variable set',\n          });\n        } else if (!check.optional) {\n          results.push({\n            name: check.name,\n            status: 'error',\n            message: 'Required environment variable not set',\n            fix: `Set ${check.key} in your .env file`,\n          });\n        }\n        // Skip optional env vars that aren't set\n      }\n\n      // 6. Check file permissions\n      const homeStackmemory = join(homedir(), '.stackmemory');\n      if (existsSync(homeStackmemory)) {\n        try {\n          const testFile = join(homeStackmemory, '.write-test');\n          writeFileSync(testFile, 'test');\n          const { unlinkSync } = await import('fs');\n          unlinkSync(testFile);\n          results.push({\n            name: 'File Permissions',\n            status: 'ok',\n            message: '~/.stackmemory is writable',\n          });\n        } catch {\n          results.push({\n            name: 'File Permissions',\n            status: 'error',\n            message: '~/.stackmemory is not writable',\n            fix: 'Run: chmod 700 ~/.stackmemory',\n          });\n        }\n      }\n\n      // Display results\n      let hasErrors = false;\n      let hasWarnings = false;\n\n      for (const result of results) {\n        const icon =\n          result.status === 'ok'\n            ? chalk.green('[OK]')\n            : result.status === 'warn'\n              ? chalk.yellow('[WARN]')\n              : chalk.red('[ERROR]');\n\n        console.log(`${icon} ${result.name}`);\n        console.log(chalk.gray(`    ${result.message}`));\n\n        if (result.fix) {\n          console.log(chalk.cyan(`    Fix: ${result.fix}`));\n\n          if (options.fix && result.status !== 'ok') {\n            // Auto-fix logic for specific issues\n            if (result.fix.includes('stackmemory setup-mcp')) {\n              console.log(chalk.gray('    Attempting auto-fix...'));\n              try {\n                execSync('stackmemory setup-mcp', { stdio: 'inherit' });\n              } catch {\n                console.log(chalk.red('    Auto-fix failed'));\n              }\n            }\n          }\n        }\n\n        if (result.status === 'error') hasErrors = true;\n        if (result.status === 'warn') hasWarnings = true;\n      }\n\n      // Summary\n      console.log('');\n      if (hasErrors) {\n        console.log(\n          chalk.red('Some issues need attention. Run suggested fixes above.')\n        );\n        process.exit(1);\n      } else if (hasWarnings) {\n        console.log(\n          chalk.yellow(\n            'StackMemory is working but some optional features are not configured.'\n          )\n        );\n      } else {\n        console.log(\n          chalk.green('All checks passed! StackMemory is properly configured.')\n        );\n      }\n    });\n}\n\n/**\n * Create setup-plugins command\n */\nexport function createSetupPluginsCommand(): Command {\n  const cmd = new Command('setup-plugins');\n\n  cmd\n    .description('Install StackMemory plugins for Claude Code')\n    .option('--force', 'Overwrite existing plugins')\n    .action(async (options) => {\n      console.log(\n        chalk.cyan('Installing StackMemory plugins for Claude Code...\\n')\n      );\n\n      const pluginsDir = join(CLAUDE_DIR, 'plugins');\n\n      // Ensure plugins directory exists\n      if (!existsSync(pluginsDir)) {\n        mkdirSync(pluginsDir, { recursive: true });\n        console.log(chalk.gray(`Created: ${pluginsDir}`));\n      }\n\n      // Find the plugins source directory\n      // Check multiple locations: local dev, global npm, local npm\n      const possiblePaths = [\n        join(process.cwd(), 'plugins'),\n        join(__dirname, '..', '..', '..', 'plugins'),\n        join(homedir(), '.stackmemory', 'plugins'),\n      ];\n\n      // Try to find via npm root\n      try {\n        const globalRoot = execSync('npm root -g', {\n          encoding: 'utf-8',\n        }).trim();\n        possiblePaths.push(\n          join(globalRoot, '@stackmemoryai', 'stackmemory', 'plugins')\n        );\n      } catch {\n        // npm not available or failed\n      }\n\n      let sourcePluginsDir: string | undefined;\n      for (const p of possiblePaths) {\n        if (existsSync(p) && existsSync(join(p, 'stackmemory'))) {\n          sourcePluginsDir = p;\n          break;\n        }\n      }\n\n      if (!sourcePluginsDir) {\n        console.log(chalk.red('Could not find StackMemory plugins directory'));\n        console.log(chalk.gray('Searched:'));\n        possiblePaths.forEach((p) => console.log(chalk.gray(`  - ${p}`)));\n        process.exit(1);\n      }\n\n      console.log(chalk.gray(`Source: ${sourcePluginsDir}\\n`));\n\n      // List of plugins to install\n      const plugins = ['stackmemory', 'ralph-wiggum'];\n      let installed = 0;\n\n      for (const plugin of plugins) {\n        const sourcePath = join(sourcePluginsDir, plugin);\n        const targetPath = join(pluginsDir, plugin);\n\n        if (!existsSync(sourcePath)) {\n          console.log(chalk.yellow(`  [SKIP] ${plugin} - not found in source`));\n          continue;\n        }\n\n        if (existsSync(targetPath)) {\n          if (options.force) {\n            // Remove existing\n            try {\n              execSync(`rm -rf \"${targetPath}\"`, { encoding: 'utf-8' });\n            } catch {\n              console.log(\n                chalk.red(`  [ERROR] ${plugin} - could not remove existing`)\n              );\n              continue;\n            }\n          } else {\n            console.log(\n              chalk.gray(`  [EXISTS] ${plugin} - use --force to overwrite`)\n            );\n            continue;\n          }\n        }\n\n        // Create symlink\n        try {\n          execSync(`ln -s \"${sourcePath}\" \"${targetPath}\"`, {\n            encoding: 'utf-8',\n          });\n          console.log(chalk.green(`  [OK] ${plugin}`));\n          installed++;\n        } catch (err) {\n          console.log(\n            chalk.red(`  [ERROR] ${plugin} - ${(err as Error).message}`)\n          );\n        }\n      }\n\n      console.log('');\n      if (installed > 0) {\n        console.log(chalk.green(`Installed ${installed} plugin(s)`));\n        console.log(chalk.gray('\\nAvailable commands in Claude Code:'));\n        console.log(\n          chalk.white('  /sm-status    ') +\n            chalk.gray('Show StackMemory status')\n        );\n        console.log(\n          chalk.white('  /sm-capture   ') +\n            chalk.gray('Capture work for handoff')\n        );\n        console.log(\n          chalk.white('  /sm-restore   ') +\n            chalk.gray('Restore from last handoff')\n        );\n        console.log(\n          chalk.white('  /sm-decision  ') + chalk.gray('Record a decision')\n        );\n        console.log(\n          chalk.white('  /sm-help      ') + chalk.gray('Show all commands')\n        );\n        console.log(\n          chalk.white('  /ralph-loop   ') +\n            chalk.gray('Start Ralph iteration loop')\n        );\n      } else {\n        console.log(chalk.yellow('No plugins installed'));\n      }\n    });\n\n  return cmd;\n}\n\n/**\n * Create setup-remote command for remote MCP server auto-start\n */\nexport function createSetupRemoteCommand(): Command {\n  const cmd = new Command('setup-remote');\n\n  cmd\n    .description('Configure remote MCP server to auto-start on boot')\n    .option('--port <number>', 'Port for remote server', '3847')\n    .option('--project <path>', 'Project root directory')\n    .option('--uninstall', 'Remove the auto-start service')\n    .option('--status', 'Check service status')\n    .action(async (options) => {\n      const home = homedir();\n      const platform = process.platform;\n\n      // Service configuration\n      const serviceName =\n        platform === 'darwin'\n          ? 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       try {\n                const health = execSync(\n                  `curl -s http://localhost:${options.port}/health 2>/dev/null`,\n                  { encoding: 'utf-8' }\n                );\n                const data = JSON.parse(health);\n                console.log(chalk.gray(`  Project: ${data.projectId}`));\n                console.log(\n                  chalk.gray(`  URL: http://localhost:${options.port}/sse`)\n                );\n              } catch {\n                console.log(\n                  chalk.yellow('  Server not responding to health check')\n                );\n              }\n            } else {\n              console.log(chalk.yellow('[STOPPED]') + ' Service not running');\n            }\n          } catch {\n            console.log(chalk.yellow('[UNKNOWN]') + ' Could not check status');\n          }\n        } else if (platform === 'linux') {\n          try {\n            execSync(`systemctl --user is-active ${serviceName}`, {\n              stdio: 'pipe',\n            });\n            console.log(chalk.green('[RUNNING]') + ' Service is active');\n          } catch {\n            console.log(chalk.yellow('[STOPPED]') + ' Service not running');\n          }\n        }\n\n        console.log(chalk.gray(`\\nService file: ${serviceFile}`));\n        console.log(chalk.gray(`Logs: ${logDir}/remote-mcp.log`));\n        return;\n      }\n\n      // Handle uninstall\n      if (options.uninstall) {\n        console.log(chalk.cyan('\\nUninstalling Remote MCP Server Service\\n'));\n\n        if (platform === 'darwin') {\n          try {\n            execSync(`launchctl unload \"${serviceFile}\"`, { stdio: 'pipe' });\n            console.log(chalk.green('[OK]') + ' Service unloaded');\n          } catch {\n            console.log(chalk.gray('[SKIP]') + ' Service was not loaded');\n          }\n\n          if (existsSync(serviceFile)) {\n            const fs = await import('fs/promises');\n            await fs.unlink(serviceFile);\n            console.log(chalk.green('[OK]') + ' Service file removed');\n          }\n        } else if (platform === 'linux') {\n          try {\n            execSync(`systemctl --user stop ${serviceName}`, { stdio: 'pipe' });\n            execSync(`systemctl --user disable ${serviceName}`, {\n              stdio: 'pipe',\n            });\n            console.log(chalk.green('[OK]') + ' Service stopped and disabled');\n          } catch {\n            console.log(chalk.gray('[SKIP]') + ' Service was not running');\n          }\n\n          if (existsSync(serviceFile)) {\n            const fs = await import('fs/promises');\n            await fs.unlink(serviceFile);\n            execSync('systemctl --user daemon-reload', { stdio: 'pipe' });\n            console.log(chalk.green('[OK]') + ' Service file removed');\n          }\n        }\n\n        console.log(chalk.green('\\nRemote MCP service uninstalled'));\n        return;\n      }\n\n      // Install service\n      console.log(chalk.cyan('\\nSetting up Remote MCP Server Auto-Start\\n'));\n\n      if (platform !== 'darwin' && platform !== 'linux') {\n        console.log(\n          chalk.red('Auto-start is only supported on macOS and Linux')\n        );\n        console.log(chalk.gray('\\nManual start: stackmemory mcp-remote'));\n        return;\n      }\n\n      // Create directories\n      if (!existsSync(serviceDir)) {\n        mkdirSync(serviceDir, { recursive: true });\n      }\n      if (!existsSync(logDir)) {\n        mkdirSync(logDir, { recursive: true });\n      }\n\n      // Find node and stackmemory paths\n      let nodePath: string;\n      try {\n        nodePath = execSync('which node', { encoding: 'utf-8' }).trim();\n      } catch {\n        nodePath = '/usr/local/bin/node';\n      }\n\n      // Find stackmemory CLI path\n      let stackmemoryPath: string;\n      try {\n        stackmemoryPath = execSync('which stackmemory', {\n          encoding: 'utf-8',\n        }).trim();\n      } catch {\n        // Try npm global path\n        try {\n          const npmRoot = execSync('npm root -g', { encoding: 'utf-8' }).trim();\n          stackmemoryPath = join(\n            npmRoot,\n            '@stackmemoryai',\n            'stackmemory',\n            'dist',\n            'cli',\n            'index.js'\n          );\n        } catch {\n          stackmemoryPath = 'npx stackmemory';\n        }\n      }\n\n      const projectPath = options.project || home;\n      const port = options.port || '3847';\n\n      if (platform === 'darwin') {\n        // Generate macOS launchd plist\n        const plist = `<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n<!DOCTYPE plist PUBLIC \"-//Apple//DTD PLIST 1.0//EN\" \"http://www.apple.com/DTDs/PropertyList-1.0.dtd\">\n<plist version=\"1.0\">\n<dict>\n    <key>Label</key>\n    <string>${serviceName}</string>\n\n    <key>ProgramArguments</key>\n    <array>\n        <string>${stackmemoryPath.includes('npx') ? 'npx' : nodePath}</string>\n        ${stackmemoryPath.includes('npx') ? '<string>stackmemory</string>' : `<string>${stackmemoryPath}</string>`}\n        <string>mcp-remote</string>\n        <string>--port</string>\n        <string>${port}</string>\n        <string>--project</string>\n        <string>${projectPath}</string>\n    </array>\n\n    <key>RunAtLoad</key>\n    <true/>\n\n    <key>KeepAlive</key>\n    <dict>\n        <key>SuccessfulExit</key>\n        <false/>\n    </dict>\n\n    <key>WorkingDirectory</key>\n    <string>${projectPath}</string>\n\n    <key>StandardOutPath</key>\n    <string>${logDir}/remote-mcp.log</string>\n\n    <key>StandardErrorPath</key>\n    <string>${logDir}/remote-mcp.error.log</string>\n\n    <key>EnvironmentVariables</key>\n    <dict>\n        <key>HOME</key>\n        <string>${home}</string>\n        <key>PATH</key>\n        <string>/usr/local/bin:/opt/homebrew/bin:/usr/bin:/bin</string>\n        <key>NODE_ENV</key>\n        <string>production</string>\n    </dict>\n\n    <key>ThrottleInterval</key>\n    <integer>10</integer>\n</dict>\n</plist>`;\n\n        writeFileSync(serviceFile, plist);\n        console.log(chalk.green('[OK]') + ' Created launchd service file');\n\n        // Unload if already loaded\n        try {\n          execSync(`launchctl unload \"${serviceFile}\" 2>/dev/null`, {\n            stdio: 'pipe',\n          });\n        } catch {\n          // Not loaded, ignore\n        }\n\n        // Load the service\n        try {\n          execSync(`launchctl load -w \"${serviceFile}\"`, { stdio: 'pipe' });\n          console.log(chalk.green('[OK]') + ' Service loaded and started');\n        } catch (err) {\n          console.log(chalk.red('[ERROR]') + ` Failed to load service: ${err}`);\n          return;\n        }\n      } else if (platform === 'linux') {\n        // Generate systemd service\n        const service = `[Unit]\nDescription=StackMemory Remote MCP Server\nDocumentation=https://github.com/stackmemoryai/stackmemory\nAfter=network.target\n\n[Service]\nType=simple\nExecStart=${stackmemoryPath.includes('npx') ? 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   "names": []
 }

package/dist/src/cli/index.js

@@ -17,7 +17,7 @@ import { UpdateChecker } from "../core/utils/update-checker.js";
 import { ProgressTracker } from "../core/monitoring/progress-tracker.js";
 import { registerProjectCommands } from "./commands/projects.js";
 import { createSessionCommands } from "./commands/session.js";
-import { isFeatureEnabled, isLocalOnly } from "../core/config/feature-flags.js";
+import { isFeatureEnabled } from "../core/config/feature-flags.js";
 import { registerWorktreeCommands } from "./commands/worktree.js";
 import { registerOnboardingCommand } from "./commands/onboard.js";
 import { createTaskCommands } from "./commands/tasks.js";
@@ -46,7 +46,6 @@ import { createShellCommand } from "./commands/shell.js";
 import { createAPICommand } from "./commands/api.js";
 import { createCleanupProcessesCommand } from "./commands/cleanup-processes.js";
 import { createAutoBackgroundCommand } from "./commands/auto-background.js";
-import { createSettingsCommand } from "./commands/settings.js";
 import { createRetrievalCommands } from "./commands/retrieval.js";
 import { createDiscoveryCommands } from "./commands/discovery.js";
 import { createModelCommand } from "./commands/model.js";
@@ -61,8 +60,6 @@ import { join } from "path";
 import { existsSync, mkdirSync } from "fs";
 import inquirer from "inquirer";
 import { enableChromaDB } from "../core/config/storage-config.js";
-import { spawn } from "child_process";
-import { homedir } from "os";
 import { createRequire } from "module";
 import { fileURLToPath } from "url";
 import * as pathModule from "path";
@@ -91,64 +88,6 @@ function isTestEnv() {
 }
 UpdateChecker.checkForUpdates(VERSION, true).catch(() => {
 });
-async function startNotificationServices() {
-  if (isLocalOnly() || !isFeatureEnabled("whatsapp")) return;
-  try {
-    const { loadSMSConfig } = await import("../hooks/sms-notify.js");
-    const config = loadSMSConfig();
-    if (!config.enabled) return;
-    const WEBHOOK_PORT = 3456;
-    let webhookStarted = false;
-    let ngrokStarted = false;
-    const webhookRunning = await fetch(
-      `http://localhost:${WEBHOOK_PORT}/health`
-    ).then((r) => r.ok).catch(() => false);
-    if (!webhookRunning) {
-      const webhookPath = join(__dirname, "../hooks/sms-webhook.js");
-      const webhookProcess = spawn("node", [webhookPath], {
-        detached: true,
-        stdio: "ignore",
-        env: { ...process.env, SMS_WEBHOOK_PORT: String(WEBHOOK_PORT) }
-      });
-      webhookProcess.unref();
-      webhookStarted = true;
-    }
-    const ngrokRunning = await fetch("http://localhost:4040/api/tunnels").then((r) => r.ok).catch(() => false);
-    if (!ngrokRunning) {
-      const ngrokProcess = spawn("ngrok", ["http", String(WEBHOOK_PORT)], {
-        detached: true,
-        stdio: "ignore"
-      });
-      ngrokProcess.unref();
-      ngrokStarted = true;
-    }
-    if (webhookStarted || ngrokStarted) {
-      setTimeout(async () => {
-        try {
-          const tunnels = await fetch("http://localhost:4040/api/tunnels").then(
-            (r) => r.json()
-          );
-          const publicUrl = tunnels?.tunnels?.[0]?.public_url;
-          if (publicUrl) {
-            const configDir = join(homedir(), ".stackmemory");
-            const configPath = join(configDir, "ngrok-url.txt");
-            const { writeFileSync, mkdirSync: mkdirSync2, existsSync: existsSync2 } = await import("fs");
-            if (!existsSync2(configDir)) {
-              mkdirSync2(configDir, { recursive: true });
-            }
-            writeFileSync(configPath, publicUrl);
-            console.log(
-              chalk.gray(`[notify] Webhook: ${publicUrl}/sms/incoming`)
-            );
-          }
-        } catch {
-        }
-      }, 4e3);
-    }
-  } catch {
-  }
-}
-startNotificationServices();
 program.name("stackmemory").description(
   "Lossless memory runtime for AI coding tools - organizes context as a call stack instead of linear chat logs, with team collaboration and infinite retention"
 ).version(VERSION);
@@ -604,16 +543,7 @@ program.addCommand(createShellCommand());
 program.addCommand(createAPICommand());
 program.addCommand(createCleanupProcessesCommand());
 program.addCommand(createAutoBackgroundCommand());
-program.addCommand(createSettingsCommand());
 program.addCommand(createPingCommand());
-if (isFeatureEnabled("whatsapp")) {
-  lazyCommands.push(
-    import("./commands/sms-notify.js").then(
-      ({ createSMSNotifyCommand }) => program.addCommand(createSMSNotifyCommand())
-    ).catch(() => {
-    })
-  );
-}
 program.addCommand(createRetrievalCommands());
 program.addCommand(createDiscoveryCommands());
 program.addCommand(createModelCommand());