@spikedpunch/mast 0.2.0 → 0.4.0

package/dist/cli/status.js

@@ -20,12 +20,14 @@ export async function buildStatus(options = {}) {
     if (meta === null) {
         return {
             state_dir: config.resolved_state_dir,
+            project_root: config.resolved_project_root,
             initialised: false,
             schema_version: CURRENT_SCHEMA_VERSION,
             last_indexed: null,
             indexed_files: null,
             chunk_count: null,
             stale_files: null,
+            stale_breakdown: null,
             parse_errors: null,
             write_errors: null,
             index_fresh: false,
@@ -37,26 +39,32 @@ export async function buildStatus(options = {}) {
     // above, because the `meta === null` branch has already returned for a state
     // dir that was never indexed.
     const db = openDatabase(config.resolved_state_dir);
-    let staleCount;
+    let freshness;
     try {
-        staleCount = (await measureFreshness(config, db)).total;
+        freshness = await measureFreshness(config, db);
     }
     finally {
         await db.destroy();
     }
     return {
         state_dir: config.resolved_state_dir,
+        project_root: config.resolved_project_root,
         initialised: true,
         // From the binary, never from index.json — see StatusResult.schema_version.
         schema_version: CURRENT_SCHEMA_VERSION,
         last_indexed: meta.last_indexed ?? null,
         indexed_files: meta.file_count ?? 0,
         chunk_count: meta.chunk_count ?? 0,
-        stale_files: staleCount,
+        stale_files: freshness.total,
+        stale_breakdown: {
+            changed: freshness.stale,
+            unindexed: freshness.unindexed,
+            deleted: freshness.deleted,
+        },
         parse_errors: meta.parse_errors ?? 0,
         write_errors: meta.write_errors ?? 0,
-        index_fresh: staleCount === 0,
-        freshness_cause: freshnessCause(staleCount),
+        index_fresh: freshness.total === 0,
+        freshness_cause: freshnessCause(freshness),
         seed_commit: meta.seed_commit,
     };
 }
@@ -89,18 +97,36 @@ export function registerStatusCommand(program) {
         const ago = status.last_indexed != null
             ? ` (${formatAge(new Date(status.last_indexed))} ago)`
             : '';
+        // The split is printed inline rather than on its own line: `stale_files`
+        // names one of the three things it counts, and the total alone has been
+        // read as "3391 files changed" when it was one changed file and 3390
+        // paths belonging to another tree (D049).
+        const b = status.stale_breakdown;
+        const split = b !== null && (status.stale_files ?? 0) > 0
+            ? `  (changed ${String(b.changed)}, unindexed ${String(b.unindexed)}, deleted ${String(b.deleted)})`
+            : '';
         process.stdout.write([
             `state_dir:      ${status.state_dir}`,
+            `project_root:   ${status.project_root}`,
             `schema_version: ${status.schema_version}`,
             `last_indexed:   ${status.last_indexed ?? 'never'}${ago}`,
             `indexed_files:  ${String(status.indexed_files)}`,
             `chunk_count:    ${String(status.chunk_count)}`,
-            `stale_files:    ${String(status.stale_files)}`,
+            `stale_files:    ${String(status.stale_files)}${split}`,
             `parse_errors:   ${String(status.parse_errors)}`,
             `write_errors:   ${String(status.write_errors)}`,
             `index_fresh:    ${String(status.index_fresh)}`,
             `freshness_cause: ${status.freshness_cause ?? 'none'}`,
             ...(status.seed_commit != null ? [`seed_commit:    ${status.seed_commit}`] : []),
+            ...(status.freshness_cause === 'root_mismatch' ? [
+                '',
+                `! This index does not describe the tree at ${status.project_root}.`,
+                '  Most files here are unknown to it, and most files it lists are not here —',
+                '  it was built for a different project root, so reindexing will not move',
+                '  these numbers. Check the path argument and --state-dir: a relative',
+                '  --state-dir resolves against the path argument, not the shell\'s',
+                '  working directory.',
+            ] : []),
         ].join('\n') + '\n');
     });
 }

package/dist/cli/status.js.map

@@ -1 +1 @@
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package/dist/cli/upgrade-cmd.d.ts

@@ -1,4 +1,5 @@
 import type { Command } from 'commander';
+import { type InstalledArtifacts } from './installed-artifacts.js';
 /**
  * `mast upgrade` — checks and instructs. It deliberately does NOT perform the upgrade.
  *
@@ -26,6 +27,8 @@ export interface UpgradeFacts {
     /** Schema recorded in the user's index, or `null` if never indexed. */
     readonly indexedSchema: string | null;
     readonly chunkCount: number | null;
+    /** What of mast's hooks, rules files and skill blocks is installed here and under the user's home. */
+    readonly installed: InstalledArtifacts;
 }
 /** Semver compare, prerelease-aware. Returns <0, 0, or >0. */
 export declare function compareVersions(a: string, b: string): number;
@@ -40,9 +43,10 @@ export declare function buildUpgradeReport(f: UpgradeFacts): string;
 /** Registry lookup, injected so tests never depend on the network. */
 export type LatestVersionLookup = () => Promise<string | null>;
 export declare const fetchLatestFromNpm: LatestVersionLookup;
-export declare function gatherUpgradeFacts(options?: {
+export declare function gatherUpgradeFacts(options: {
     path?: string;
     stateDir?: string;
+    home: string;
 }, lookup?: LatestVersionLookup): Promise<UpgradeFacts>;
 export declare function registerUpgradeCommand(program: Command): void;
 //# sourceMappingURL=upgrade-cmd.d.ts.map

package/dist/cli/upgrade-cmd.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"upgrade-cmd.d.ts","sourceRoot":"","sources":["../../src/cli/upgrade-cmd.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAIzC;;;;;;;;;;;;;;GAcG;AAEH,MAAM,MAAM,WAAW,GAAG,OAAO,GAAG,QAAQ,GAAG,QAAQ,CAAC;AACxD,MAAM,MAAM,cAAc,GAAG,MAAM,GAAG,KAAK,GAAG,MAAM,CAAC;AAErD,MAAM,WAAW,YAAY;IAC3B,QAAQ,CAAC,OAAO,EAAE,MAAM,CAAC;IACzB,sFAAsF;IACtF,QAAQ,CAAC,MAAM,EAAE,MAAM,GAAG,IAAI,CAAC;IAC/B,QAAQ,CAAC,WAAW,EAAE,WAAW,CAAC;IAClC,QAAQ,CAAC,cAAc,EAAE,cAAc,CAAC;IACxC,QAAQ,CAAC,aAAa,EAAE,MAAM,CAAC;IAC/B,uEAAuE;IACvE,QAAQ,CAAC,aAAa,EAAE,MAAM,GAAG,IAAI,CAAC;IACtC,QAAQ,CAAC,UAAU,EAAE,MAAM,GAAG,IAAI,CAAC;CACpC;AAED,8DAA8D;AAC9D,wBAAgB,eAAe,CAAC,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,GAAG,MAAM,CAe5D;AAED;;;;GAIG;AACH,wBAAgB,iBAAiB,CAAC,SAAS,EAAE,MAAM,EAAE,WAAW,EAAE,MAAM,GAAG,WAAW,CAIrF;AAED,wBAAgB,iBAAiB,CAAC,IAAI,EAAE,WAAW,EAAE,EAAE,EAAE,cAAc,GAAG,MAAM,CAU/E;AAED,wBAAgB,kBAAkB,CAAC,CAAC,EAAE,YAAY,GAAG,MAAM,CAuB1D;AAED,sEAAsE;AACtE,MAAM,MAAM,mBAAmB,GAAG,MAAM,OAAO,CAAC,MAAM,GAAG,IAAI,CAAC,CAAC;AAE/D,eAAO,MAAM,kBAAkB,EAAE,mBAahC,CAAC;AASF,wBAAsB,kBAAkB,CACtC,OAAO,GAAE;IAAE,IAAI,CAAC,EAAE,MAAM,CAAC;IAAC,QAAQ,CAAC,EAAE,MAAM,CAAA;CAAO,EAClD,MAAM,GAAE,mBAAwC,GAC/C,OAAO,CAAC,YAAY,CAAC,CAqBvB;AAED,wBAAgB,sBAAsB,CAAC,OAAO,EAAE,OAAO,GAAG,IAAI,CAa7D"}
+{"version":3,"file":"upgrade-cmd.d.ts","sourceRoot":"","sources":["../../src/cli/upgrade-cmd.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAGzC,OAAO,EAA0C,KAAK,kBAAkB,EAAE,MAAM,0BAA0B,CAAC;AAG3G;;;;;;;;;;;;;;GAcG;AAEH,MAAM,MAAM,WAAW,GAAG,OAAO,GAAG,QAAQ,GAAG,QAAQ,CAAC;AACxD,MAAM,MAAM,cAAc,GAAG,MAAM,GAAG,KAAK,GAAG,MAAM,CAAC;AAErD,MAAM,WAAW,YAAY;IAC3B,QAAQ,CAAC,OAAO,EAAE,MAAM,CAAC;IACzB,sFAAsF;IACtF,QAAQ,CAAC,MAAM,EAAE,MAAM,GAAG,IAAI,CAAC;IAC/B,QAAQ,CAAC,WAAW,EAAE,WAAW,CAAC;IAClC,QAAQ,CAAC,cAAc,EAAE,cAAc,CAAC;IACxC,QAAQ,CAAC,aAAa,EAAE,MAAM,CAAC;IAC/B,uEAAuE;IACvE,QAAQ,CAAC,aAAa,EAAE,MAAM,GAAG,IAAI,CAAC;IACtC,QAAQ,CAAC,UAAU,EAAE,MAAM,GAAG,IAAI,CAAC;IACnC,sGAAsG;IACtG,QAAQ,CAAC,SAAS,EAAE,kBAAkB,CAAC;CACxC;AAED,8DAA8D;AAC9D,wBAAgB,eAAe,CAAC,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,GAAG,MAAM,CAe5D;AAED;;;;GAIG;AACH,wBAAgB,iBAAiB,CAAC,SAAS,EAAE,MAAM,EAAE,WAAW,EAAE,MAAM,GAAG,WAAW,CAIrF;AAED,wBAAgB,iBAAiB,CAAC,IAAI,EAAE,WAAW,EAAE,EAAE,EAAE,cAAc,GAAG,MAAM,CAU/E;AAED,wBAAgB,kBAAkB,CAAC,CAAC,EAAE,YAAY,GAAG,MAAM,CAwB1D;AAwBD,sEAAsE;AACtE,MAAM,MAAM,mBAAmB,GAAG,MAAM,OAAO,CAAC,MAAM,GAAG,IAAI,CAAC,CAAC;AAE/D,eAAO,MAAM,kBAAkB,EAAE,mBAahC,CAAC;AASF,wBAAsB,kBAAkB,CACtC,OAAO,EAAE;IAAE,IAAI,CAAC,EAAE,MAAM,CAAC;IAAC,QAAQ,CAAC,EAAE,MAAM,CAAC;IAAC,IAAI,EAAE,MAAM,CAAA;CAAE,EAC3D,MAAM,GAAE,mBAAwC,GAC/C,OAAO,CAAC,YAAY,CAAC,CAsBvB;AAED,wBAAgB,sBAAsB,CAAC,OAAO,EAAE,OAAO,GAAG,IAAI,CAa7D"}

package/dist/cli/upgrade-cmd.js

@@ -2,6 +2,8 @@ import { readFileSync } from 'node:fs';
 import { fileURLToPath } from 'node:url';
 import { dirname, join, relative, isAbsolute } from 'node:path';
 import { CLI_VERSION, PACKAGE_NAME } from './version.js';
+import { homedir } from 'node:os';
+import { findInstalledArtifacts, readFileOrNull } from './installed-artifacts.js';
 import { resolveConfig, CURRENT_SCHEMA_VERSION } from '../store/config.js';
 /** Semver compare, prerelease-aware. Returns <0, 0, or >0. */
 export function compareVersions(a, b) {
@@ -63,8 +65,30 @@ export function buildUpgradeReport(f) {
         const size = f.chunkCount === null ? 'your whole project' : `${f.chunkCount.toLocaleString('en-US')} chunks`;
         out.push(`Your index was built under schema ${f.indexedSchema}; this build expects ${f.currentSchema}.`, `The next \`mast serve\` or \`mast index\` will discard it and reindex ${size} from scratch.`, 'Nothing is lost that cannot be rebuilt — the index is derived state — but budget the time.', '');
     }
+    out.push(...afterUpgradingLines(f.installed));
     return out.join('\n').trimEnd();
 }
+const SETUP_ORDER = ['claude', 'cursor', 'vscode', 'windsurf', 'zed'];
+/**
+ * Hooks and rules files are written by a specific version, and this binary cannot tell what
+ * the next one would write. So the report names the commands that can: `--check` exits 1 on
+ * a file that differs from what the installed version would write.
+ */
+function afterUpgradingLines(i) {
+    const projectHarnesses = new Set([...i.projectHooks, ...i.rulesHarnesses, ...(i.zedOnlyBlockFiles.length > 0 ? ['zed'] : [])]);
+    const commands = [
+        ...SETUP_ORDER.filter((h) => projectHarnesses.has(h)).map((h) => `  mast setup ${h} --check`),
+        ...SETUP_ORDER.filter((h) => i.globalHooks.some((g) => g === h)).map((h) => `  mast setup ${h} --global --check`),
+        ...(i.skillBlockFiles.length > 0 ? [`  mast skill --install        # refreshes the block in ${i.skillBlockFiles.join(', ')}`] : []),
+    ];
+    if (commands.length === 0)
+        return [];
+    return [
+        'After upgrading, from the project root, re-check what mast installed earlier:',
+        ...commands,
+        'A --check that exits 1 means that file no longer matches; run the same command without --check to update it.', '',
+    ];
+}
 export const fetchLatestFromNpm = async () => {
     try {
         const res = await fetch(`https://registry.npmjs.org/${PACKAGE_NAME}/latest`, {
@@ -89,7 +113,7 @@ function detectPackageManager() {
         return 'yarn';
     return 'pnpm';
 }
-export async function gatherUpgradeFacts(options = {}, lookup = fetchLatestFromNpm) {
+export async function gatherUpgradeFacts(options, lookup = fetchLatestFromNpm) {
     const config = resolveConfig({ projectRoot: options.path, stateDirOverride: options.stateDir });
     let indexedSchema = null;
     let chunkCount = null;
@@ -109,16 +133,17 @@ export async function gatherUpgradeFacts(options = {}, lookup = fetchLatestFromN
         currentSchema: CURRENT_SCHEMA_VERSION,
         indexedSchema,
         chunkCount,
+        installed: findInstalledArtifacts(config.resolved_project_root, options.home, readFileOrNull),
     };
 }
 export function registerUpgradeCommand(program) {
     program
         .command('upgrade [path]')
-        .description('Check for a newer release and print how to install it, including any reindex it will cost')
+        .description('Check for a newer release and print how to install it, including any reindex it will cost and any installed hooks to re-check')
         .option('--state-dir <dir>', 'State directory')
         .action(async (path, opts) => {
         try {
-            process.stdout.write(buildUpgradeReport(await gatherUpgradeFacts({ path, stateDir: opts.stateDir })) + '\n');
+            process.stdout.write(buildUpgradeReport(await gatherUpgradeFacts({ path, stateDir: opts.stateDir, home: homedir() })) + '\n');
         }
         catch (err) {
             process.stderr.write(`${err instanceof Error ? err.message : String(err)}\n`);

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package/dist/indexer/freshness.d.ts

@@ -36,6 +36,16 @@ export interface IndexFreshness {
     readonly deleted: number;
     /** `stale + unindexed + deleted` — what both surfaces report as `stale_files`. */
     readonly total: number;
+    /**
+     * Indexable files this walk found, whatever their index state — the
+     * denominator the three counts above are drawn against.
+     *
+     * Carried so a caller can tell "some of this tree is unindexed" from "none of
+     * this tree is indexed", which is the difference between a stale index and an
+     * index built for a different project root (D048). Without it `unindexed` is
+     * a bare count with nothing to compare it to.
+     */
+    readonly walked: number;
 }
 /**
  * Measure the index against the working tree.

package/dist/indexer/freshness.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"freshness.d.ts","sourceRoot":"","sources":["../../src/indexer/freshness.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;GA0BG;AAIH,OAAO,KAAK,EAAE,EAAE,EAAE,MAAM,gBAAgB,CAAC;AACzC,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,oBAAoB,CAAC;AAGzD,MAAM,WAAW,cAAc;IAC7B,yEAAyE;IACzE,QAAQ,CAAC,KAAK,EAAE,MAAM,CAAC;IACvB,qEAAqE;IACrE,QAAQ,CAAC,SAAS,EAAE,MAAM,CAAC;IAC3B,6CAA6C;IAC7C,QAAQ,CAAC,OAAO,EAAE,MAAM,CAAC;IACzB,kFAAkF;IAClF,QAAQ,CAAC,KAAK,EAAE,MAAM,CAAC;CACxB;AAED;;;;;;GAMG;AACH,wBAAsB,gBAAgB,CAAC,MAAM,EAAE,cAAc,EAAE,EAAE,EAAE,EAAE,GAAG,OAAO,CAAC,cAAc,CAAC,CAiC9F"}
+{"version":3,"file":"freshness.d.ts","sourceRoot":"","sources":["../../src/indexer/freshness.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;GA0BG;AAIH,OAAO,KAAK,EAAE,EAAE,EAAE,MAAM,gBAAgB,CAAC;AACzC,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,oBAAoB,CAAC;AAGzD,MAAM,WAAW,cAAc;IAC7B,yEAAyE;IACzE,QAAQ,CAAC,KAAK,EAAE,MAAM,CAAC;IACvB,qEAAqE;IACrE,QAAQ,CAAC,SAAS,EAAE,MAAM,CAAC;IAC3B,6CAA6C;IAC7C,QAAQ,CAAC,OAAO,EAAE,MAAM,CAAC;IACzB,kFAAkF;IAClF,QAAQ,CAAC,KAAK,EAAE,MAAM,CAAC;IACvB;;;;;;;;OAQG;IACH,QAAQ,CAAC,MAAM,EAAE,MAAM,CAAC;CACzB;AAED;;;;;;GAMG;AACH,wBAAsB,gBAAgB,CAAC,MAAM,EAAE,cAAc,EAAE,EAAE,EAAE,EAAE,GAAG,OAAO,CAAC,cAAc,CAAC,CAuC9F"}

package/dist/indexer/freshness.js

@@ -67,6 +67,12 @@ export async function measureFreshness(config, db) {
     for (const path of indexed.keys())
         if (!onDisk.has(path))
             gone.add(path);
-    return { stale, unindexed, deleted: gone.size, total: stale + unindexed + gone.size };
+    return {
+        stale,
+        unindexed,
+        deleted: gone.size,
+        total: stale + unindexed + gone.size,
+        walked: onDisk.size,
+    };
 }
 //# sourceMappingURL=freshness.js.map

package/dist/indexer/freshness.js.map

@@ -1 +1 @@
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package/dist/indexer/import-resolver.js

@@ -90,24 +90,36 @@ function buildResolver(projectRoot) {
     };
     /** Resolve a base path (possibly without extension) to a real indexed file. */
     const probe = (base, ctx) => {
-        // NodeNext source-first precedence: when the specifier carries a compiled
-        // JS extension (`./x.js`), prefer the TypeScript source (`x.ts`) that would
-        // emit it, ahead of any literal `x.js` on disk (see JS_TO_TS_EXTS).
-        for (const [jsExt, tsExts] of JS_TO_TS_EXTS) {
-            if (base.endsWith(jsExt)) {
-                const stem = base.slice(0, -jsExt.length);
-                for (const tsExt of tsExts) {
-                    if (isFile(stem + tsExt))
-                        return toRel(stem + tsExt, ctx);
+        // D047: a specifier written with a trailing slash names a DIRECTORY and
+        // nothing else — `require.resolve('./routes/')` throws MODULE_NOT_FOUND
+        // when only `routes.ts` exists. `base` cannot carry that intent, because
+        // `path.resolve`/`join` normalise the slash away before we are called, so
+        // it is read off the specifier the caller preserved on `ctx`. Without this
+        // the sibling probes below win over the directory the author explicitly
+        // asked for: `Routes.ts` importing `./routes/` resolved to *itself* on a
+        // case-insensitive filesystem, and `routes/index.ts` — which had a live
+        // importer — was recorded with none.
+        const directoryOnly = ctx.specifier.endsWith('/');
+        if (!directoryOnly) {
+            // NodeNext source-first precedence: when the specifier carries a compiled
+            // JS extension (`./x.js`), prefer the TypeScript source (`x.ts`) that would
+            // emit it, ahead of any literal `x.js` on disk (see JS_TO_TS_EXTS).
+            for (const [jsExt, tsExts] of JS_TO_TS_EXTS) {
+                if (base.endsWith(jsExt)) {
+                    const stem = base.slice(0, -jsExt.length);
+                    for (const tsExt of tsExts) {
+                        if (isFile(stem + tsExt))
+                            return toRel(stem + tsExt, ctx);
+                    }
+                    break; // a base ends in at most one of these extensions
                 }
-                break; // a base ends in at most one of these extensions
             }
-        }
-        if (isFile(base))
-            return toRel(base, ctx);
-        for (const ext of CANDIDATE_EXTS) {
-            if (isFile(base + ext))
-                return toRel(base + ext, ctx);
+            if (isFile(base))
+                return toRel(base, ctx);
+            for (const ext of CANDIDATE_EXTS) {
+                if (isFile(base + ext))
+                    return toRel(base + ext, ctx);
+            }
         }
         for (const ext of CANDIDATE_EXTS) {
             const idx = join(base, `index${ext}`);

package/dist/indexer/import-resolver.js.map

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package/dist/indexer/index.d.ts

@@ -6,6 +6,7 @@ import type { WriteSpansMs } from '../graph/populate.js';
 import { extractFile } from '../ast/extract.js';
 import { type MiscasedImportReport } from './import-resolver.js';
 import type { IndexMeta, FreshnessCause } from '../ast/types.js';
+import type { IndexFreshness } from './freshness.js';
 export interface IndexResult {
     readonly filesIndexed: number;
     readonly filesSkipped: number;
@@ -226,15 +227,49 @@ export interface IndexOptions {
  */
 export declare function runIndex(config: ResolvedConfig, options: IndexOptions): Promise<IndexResult>;
 /**
- * Derive the `freshness_cause` discriminator (§9 mast_status) from the stale
- * file count. Stage 7.2 (IMPLEMENTATION_PLAN.md "Stage 7: Vector-store
+ * Derive the `freshness_cause` discriminator (§9 mast_status) from the measured
+ * freshness. Stage 7.2 (IMPLEMENTATION_PLAN.md "Stage 7: Vector-store
  * deletion") dropped the second parameter this used to take
  * (`pendingEmbeddings`) along with the `'embedding_backlog'`/`'both'` cases —
  * the Phase 2 embedder that could produce a backlog distinct from Phase 1
  * staleness was excised in Stage 7.1, so a two-cause signature asserted a
  * distinction the code could no longer draw.
+ *
+ * It took the bare total from then until 2026-09-01 (D049), which asserted the
+ * opposite error: `'phase1_stale'` for any non-zero count, including counts
+ * with no stale file in them at all. It now takes the whole measurement,
+ * because every distinction it draws is one `measureFreshness` already counted.
+ *
+ * `root_mismatch` is tested first and is the only compound condition. Let
+ * `matched` be the files on disk the index actually knows (`walked -
+ * unindexed`); the index describes a different tree when it disagrees with this
+ * one in *both* directions more than it agrees in either — more unknown files
+ * here than known ones, and more files listed that are absent than known ones.
+ *
+ * Both halves are load-bearing, and each excludes a different neighbour:
+ * dropping the `unindexed` half would call a mass deletion a root mismatch
+ * (many `deleted`, but every remaining file still matches); dropping the
+ * `deleted` half would call a never-indexed project one (everything unknown,
+ * but the index claims no files elsewhere).
+ *
+ * Stated as strict majorities against `matched` rather than as a ratio against
+ * a tuned constant, and deliberately NOT as `unindexed === walked`: that was the
+ * first form, and on the 1822-file index this was written for it did not fire,
+ * because exactly one walked path coincidentally matched an indexed one and
+ * `1569 === 1570` is false. A guard that a single accidental collision defeats
+ * is the shape this ledger calls S-02.
+ *
+ * It is decided from counted content rather than by comparing the project root
+ * against the one in the persisted state config: that path is recorded from a
+ * previous process and is meaningless under the shared-volume mounts
+ * `pickStateConfigCustomization` exists to survive.
+ *
+ * The remaining three are ordered by what a caller should do about them, not by
+ * size: `phase1_stale` first because it is the one JIT re-parse silently
+ * corrects on read, so it is the least alarming reading of a mixed count. The
+ * exact split always travels beside it in `stale_breakdown`.
  */
-export declare function freshnessCause(staleFiles: number): FreshnessCause;
+export declare function freshnessCause(freshness: IndexFreshness): FreshnessCause;
 /**
  * Load `index.json` from the state directory, or return null if absent.
  *

package/dist/indexer/index.d.ts.map

@@ -1 +1 @@
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package/dist/indexer/index.js

@@ -528,16 +528,59 @@ function symbolSignature(symbols) {
 // Freshness diagnostics (mast_status, `mast status`)
 // ---------------------------------------------------------------------------
 /**
- * Derive the `freshness_cause` discriminator (§9 mast_status) from the stale
- * file count. Stage 7.2 (IMPLEMENTATION_PLAN.md "Stage 7: Vector-store
+ * Derive the `freshness_cause` discriminator (§9 mast_status) from the measured
+ * freshness. Stage 7.2 (IMPLEMENTATION_PLAN.md "Stage 7: Vector-store
  * deletion") dropped the second parameter this used to take
  * (`pendingEmbeddings`) along with the `'embedding_backlog'`/`'both'` cases —
  * the Phase 2 embedder that could produce a backlog distinct from Phase 1
  * staleness was excised in Stage 7.1, so a two-cause signature asserted a
  * distinction the code could no longer draw.
+ *
+ * It took the bare total from then until 2026-09-01 (D049), which asserted the
+ * opposite error: `'phase1_stale'` for any non-zero count, including counts
+ * with no stale file in them at all. It now takes the whole measurement,
+ * because every distinction it draws is one `measureFreshness` already counted.
+ *
+ * `root_mismatch` is tested first and is the only compound condition. Let
+ * `matched` be the files on disk the index actually knows (`walked -
+ * unindexed`); the index describes a different tree when it disagrees with this
+ * one in *both* directions more than it agrees in either — more unknown files
+ * here than known ones, and more files listed that are absent than known ones.
+ *
+ * Both halves are load-bearing, and each excludes a different neighbour:
+ * dropping the `unindexed` half would call a mass deletion a root mismatch
+ * (many `deleted`, but every remaining file still matches); dropping the
+ * `deleted` half would call a never-indexed project one (everything unknown,
+ * but the index claims no files elsewhere).
+ *
+ * Stated as strict majorities against `matched` rather than as a ratio against
+ * a tuned constant, and deliberately NOT as `unindexed === walked`: that was the
+ * first form, and on the 1822-file index this was written for it did not fire,
+ * because exactly one walked path coincidentally matched an indexed one and
+ * `1569 === 1570` is false. A guard that a single accidental collision defeats
+ * is the shape this ledger calls S-02.
+ *
+ * It is decided from counted content rather than by comparing the project root
+ * against the one in the persisted state config: that path is recorded from a
+ * previous process and is meaningless under the shared-volume mounts
+ * `pickStateConfigCustomization` exists to survive.
+ *
+ * The remaining three are ordered by what a caller should do about them, not by
+ * size: `phase1_stale` first because it is the one JIT re-parse silently
+ * corrects on read, so it is the least alarming reading of a mixed count. The
+ * exact split always travels beside it in `stale_breakdown`.
  */
-export function freshnessCause(staleFiles) {
-    return staleFiles > 0 ? 'phase1_stale' : null;
+export function freshnessCause(freshness) {
+    if (freshness.total === 0)
+        return null;
+    const matched = freshness.walked - freshness.unindexed;
+    if (freshness.unindexed > matched && freshness.deleted > matched)
+        return 'root_mismatch';
+    if (freshness.stale > 0)
+        return 'phase1_stale';
+    if (freshness.unindexed > 0)
+        return 'unindexed_files';
+    return 'deleted_files';
 }
 /**
  * Load `index.json` from the state directory, or return null if absent.

package/dist/indexer/index.js.map

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