@specship/specship-darwin-arm64 0.29.0 → 0.30.0

package/lib/dist/server/routes/projects.js

@@ -16,10 +16,85 @@ import { writeSseHead } from './sse.js';
 import { promises as fs, watch } from 'node:fs';
 import os from 'node:os';
 import path from 'node:path';
-import { createSlugResolver } from '../ingest/project-paths.js';
+import { createSlugResolver, encodeProjectSlug } from '../ingest/project-paths.js';
+import { recordedProjects } from '../ingest/recorded-projects.js';
+import { transcriptAdapters } from '../ingest/transcripts/index.js';
+import { CLAUDE_PROFILE } from '../host-profiles.js';
 const projectsBus = new EventEmitter();
 projectsBus.setMaxListeners(0); // many SSE subscribers + internal
 export async function enumerate(claudeRoot, resolverOpts) {
+    const fromTranscripts = await enumerateTranscriptProjects(claudeRoot, resolverOpts);
+    // Projects any agent has SpecShip installed in (REQ-AGENTSWITCH-011) — the
+    // only source for an agent whose session folders cannot be mapped back to a
+    // path. Listed once: a project already found above keeps that entry.
+    const seen = new Set(fromTranscripts.map((p) => p.path));
+    // Agents that keep their own project list (REQ-AGENTSWITCH-019.A1).
+    const fromAgents = [];
+    const home = resolverOpts?.home ?? os.homedir();
+    for (const adapter of transcriptAdapters()) {
+        let found = [];
+        try {
+            found = adapter.listProjects?.(home) ?? [];
+        }
+        catch { /* one agent's files never block another's */ }
+        for (const p of found) {
+            if (seen.has(p.path))
+                continue;
+            seen.add(p.path);
+            fromAgents.push({ ...(await projectState(p.path)), slug: encodeProjectSlug(p.path), path: p.path, sessionCount: p.sessionCount, lastModifiedMs: p.lastModifiedMs, driftCount: null });
+        }
+    }
+    const fromRecord = [];
+    for (const rec of recordedProjects(resolverOpts?.recordPath)) {
+        if (seen.has(rec.path))
+            continue;
+        seen.add(rec.path);
+        let exists = false;
+        let initialized = false;
+        try {
+            exists = (await fs.stat(rec.path)).isDirectory();
+        }
+        catch { /* gone */ }
+        if (exists) {
+            try {
+                initialized = (await fs.stat(path.join(rec.path, '.specship'))).isDirectory();
+            }
+            catch { /* not initialized */ }
+        }
+        fromRecord.push({
+            slug: encodeProjectSlug(rec.path),
+            path: rec.path,
+            exists,
+            initialized,
+            sessionCount: 0,
+            lastModifiedMs: rec.recordedAtMs,
+            driftCount: null,
+        });
+    }
+    return [...fromTranscripts, ...fromAgents, ...fromRecord].sort(byRecency);
+}
+async function projectState(p) {
+    let exists = false;
+    let initialized = false;
+    try {
+        exists = (await fs.stat(p)).isDirectory();
+    }
+    catch { /* gone */ }
+    if (exists) {
+        try {
+            initialized = (await fs.stat(path.join(p, '.specship'))).isDirectory();
+        }
+        catch { /* not initialized */ }
+    }
+    return { exists, initialized };
+}
+/** Recent activity first; ties broken by path. */
+function byRecency(a, b) {
+    if (b.lastModifiedMs !== a.lastModifiedMs)
+        return b.lastModifiedMs - a.lastModifiedMs;
+    return a.path.localeCompare(b.path);
+}
+async function enumerateTranscriptProjects(claudeRoot, resolverOpts) {
     let entries;
     try {
         entries = await fs.readdir(claudeRoot, { withFileTypes: true });
@@ -71,11 +146,7 @@ export async function enumerate(claudeRoot, resolverOpts) {
         out.push({ slug, path: decoded, exists, initialized, sessionCount, lastModifiedMs, driftCount: null });
     }
     // Recent activity first; ties broken by path.
-    out.sort((a, b) => {
-        if (b.lastModifiedMs !== a.lastModifiedMs)
-            return b.lastModifiedMs - a.lastModifiedMs;
-        return a.path.localeCompare(b.path);
-    });
+    out.sort(byRecency);
     return out;
 }
 /**
@@ -167,7 +238,7 @@ function stopWatcher() {
 }
 // --- Route registration -----------------------------------------------------
 export async function registerProjectsRoutes(app) {
-    const claudeRoot = path.join(os.homedir(), '.claude', 'projects');
+    const claudeRoot = path.join(os.homedir(), CLAUDE_PROFILE.configDir, 'projects');
     startWatcher(claudeRoot, false);
     app.addHook('onClose', async () => { stopWatcher(); });
     const driftSource = (slug) => app.projects.getBySlug(slug);

package/lib/dist/server/routes/spec.js

@@ -7,6 +7,7 @@
  * boot-time primary). Returns 409 / `no_project` when neither is selectable.
  */
 import * as fs from 'node:fs';
+import * as os from 'node:os';
 import * as path from 'node:path';
 /**
  * Resolve a project-relative path to an absolute path under the project
@@ -85,6 +86,119 @@ function atomicWriteFile(targetPath, content) {
     fs.writeFileSync(tmp, content, 'utf-8');
     fs.renameSync(tmp, targetPath);
 }
+const PLAN_DRIFT_STATES = ['drifted', 'broken', 'orphaned'];
+const metaString = (meta, key) => {
+    const v = meta?.[key];
+    return typeof v === 'string' && v.trim() ? v.trim() : null;
+};
+/**
+ * The JIRA base URL for issue links — and ONLY that. Reads
+ * `SPECSHIP_JIRA_BASE_URL`, else the `baseUrl` field of the user-level JIRA
+ * config (`SPECSHIP_JIRA_CONFIG` or `~/.specship/jira.json`). That file also
+ * holds credentials; nothing but `baseUrl` is ever read out of the parsed
+ * object, returned or logged. No JIRA request is made (REQ-DASHSIMPLE-003.A4).
+ */
+export function readJiraBaseUrl() {
+    const fromEnv = process.env.SPECSHIP_JIRA_BASE_URL;
+    let base = fromEnv && fromEnv.trim() ? fromEnv.trim() : null;
+    if (!base) {
+        const file = process.env.SPECSHIP_JIRA_CONFIG ?? path.join(os.homedir(), '.specship', 'jira.json');
+        try {
+            const parsed = JSON.parse(fs.readFileSync(file, 'utf-8'));
+            const v = parsed && typeof parsed === 'object' ? parsed.baseUrl : undefined;
+            if (typeof v === 'string' && v.trim())
+                base = v.trim();
+        }
+        catch { /* absent or malformed → no links, plain-text keys */ }
+    }
+    if (!base || !/^https?:\/\//i.test(base))
+        return null;
+    return base.replace(/\/+$/, '');
+}
+const byFileOrder = (a, b) => a.sourcePath < b.sourcePath ? -1 : a.sourcePath > b.sourcePath ? 1 : (a.startLine ?? 0) - (b.startLine ?? 0);
+/**
+ * Epic → story → task from the indexed specs alone (REQ-DASHSIMPLE-003).
+ * `epicKey` and `jira_issue_<REQ>` come from each document's stored metadata
+ * (its frontmatter, as indexed) — the spec files are not re-parsed here.
+ * Documents sharing an `epicKey` merge into one epic in file order; a document
+ * without one is its own group titled after the document.
+ */
+// @implements REQ-DASHSIMPLE-003
+export function buildPlan(cg, jiraBaseUrl) {
+    const sq = cg.getSpecQueries();
+    const all = sq.getAllSpecs();
+    const coverage = new Map(cg.getSpecCoverage().requirements.map((r) => [r.specId, r]));
+    const docs = all.filter((s) => s.kind === 'document').sort(byFileOrder);
+    const docIds = new Set(docs.map((d) => d.id));
+    const reqsByDoc = new Map();
+    const looseByFile = new Map();
+    for (const s of all) {
+        if (s.kind !== 'requirement')
+            continue;
+        if (s.parentId && docIds.has(s.parentId)) {
+            const arr = reqsByDoc.get(s.parentId) ?? [];
+            arr.push(s);
+            reqsByDoc.set(s.parentId, arr);
+        }
+        else {
+            // A requirement outside any document still belongs in the plan.
+            const arr = looseByFile.get(s.sourcePath) ?? [];
+            arr.push(s);
+            looseByFile.set(s.sourcePath, arr);
+        }
+    }
+    const story = (s, meta) => {
+        const cov = coverage.get(s.id) ?? null;
+        return {
+            specId: s.id,
+            title: s.title,
+            body: s.body ?? '',
+            jiraKey: metaString(meta, `jira_issue_${s.id}`),
+            coverage: cov,
+            tasks: (cov?.criteria ?? []).map((c) => ({ specId: c.specId, title: c.title, verdict: c.verdict })),
+        };
+    };
+    const entries = [];
+    for (const d of docs) {
+        const reqs = (reqsByDoc.get(d.id) ?? []).sort(byFileOrder);
+        entries.push({
+            key: metaString(d.metadata, 'epicKey'),
+            title: d.title,
+            sourcePath: d.sourcePath,
+            startLine: d.startLine,
+            doc: { id: d.id, title: d.title, stories: reqs.map((r) => story(r, d.metadata)) },
+        });
+    }
+    for (const [file, reqs] of looseByFile) {
+        entries.push({
+            key: null, title: file, sourcePath: file,
+            doc: { id: file, title: file, stories: reqs.sort(byFileOrder).map((r) => story(r, undefined)) },
+        });
+    }
+    entries.sort(byFileOrder);
+    const epics = [];
+    const byKey = new Map();
+    for (const e of entries) {
+        if (e.key) {
+            const hit = byKey.get(e.key);
+            if (hit) {
+                hit.docs.push(e.doc);
+                continue;
+            }
+            const epic = { key: e.key, title: e.title, docs: [e.doc] };
+            byKey.set(e.key, epic);
+            epics.push(epic);
+        }
+        else {
+            epics.push({ key: null, title: e.title, docs: [e.doc] });
+        }
+    }
+    const titles = new Map(all.map((s) => [s.id, s.title]));
+    const driftLinks = sq
+        .getLinksByState([...PLAN_DRIFT_STATES])
+        .map((l) => ({ ...l, specTitle: titles.get(l.specId) ?? null }));
+    return { jiraBaseUrl, epics, driftLinks };
+}
 async function resolveCg(app, req, reply) {
     const cg = await app.activeCg(req);
     if (!cg) {
@@ -148,6 +262,17 @@ export async function registerSpecRoutes(app) {
         const scope = req.query.spec && req.query.spec.length > 0 ? req.query.spec : undefined;
         return cg.getSpecCoverage(scope);
     });
+    /**
+     * GET /api/spec/plan — epic → story → task for the Plan reader
+     * (REQ-DASHSIMPLE-003). Read-only, no JIRA call; the only JIRA config field
+     * it exposes is the base URL.
+     */
+    app.get('/api/spec/plan', async (req, reply) => {
+        const cg = await resolveCg(app, req, reply);
+        if (!cg)
+            return;
+        return buildPlan(cg, readJiraBaseUrl());
+    });
     app.get('/api/spec/:id', async (req, reply) => {
         const cg = await resolveCg(app, req, reply);
         if (!cg)

package/lib/dist/server/server.js

@@ -190,10 +190,16 @@ export async function createServer(options) {
         const primaryPath = options.projectRoot ?? null;
         const isPrimary = primaryPath ? primaryProjectMatcher(primaryPath) : () => false;
         const resolveGraph = (projectPath) => primaryPath && isPrimary(projectPath) ? primaryCg : null;
-        watcher = startWatcher(dbHandle, { verbose, resolveGraph });
+        // projectPaths lets hash-keyed transcripts (Gemini CLI) resolve to the
+        // primary project's real path (REQ-AGENTSWITCH-004).
+        watcher = startWatcher(dbHandle, {
+            verbose,
+            resolveGraph,
+            projectPaths: primaryPath ? [primaryPath] : [],
+        });
         ownedWatcher = true;
         if (verbose)
-            console.error('[specship-server] JSONL ingest watcher started');
+            console.error('[specship-server] transcript ingest watcher started');
         // The specship-impact boot backfill is gone with the engine it fed
         // (REQ-SURF-005) — nothing reads displaced_files/resolution any more.
         // Re-cost prompts ingested while their model family was unpriced,

package/lib/dist/skills/spec-author/SKILL.md

@@ -132,7 +132,7 @@ Next steps:
 
 ## When to use the workflow instead of the skill directly
 
-This skill is the **lightweight path** — runs conversationally in Claude Code, no formal approval gates. For team contexts that want the same discipline `spec-implement` enforces, point the user at:
+This skill is the **lightweight path** — runs conversationally in your coding agent, no formal approval gates. For team contexts that want the same discipline `spec-implement` enforces, point the user at:
 
 ```
 specship workflow run spec-author --input DESCRIPTION="..."

package/lib/dist/skills/spec-author/references/gap-questions.md

@@ -102,7 +102,7 @@ In SpecShip itself (and in any project whose `CLAUDE.md` states equivalents), th
 | Surface the spec touches | What the spec must account for |
 |---|---|
 | **MCP tools** (`src/mcp/`) — new tool, changed output, changed budget | Explore budgets are **monotonic**: a change may not shrink what a given budget returns. And `src/mcp/server-instructions.ts` is the **single source of truth** for agent-facing tool guidance — a spec that changes how the agent should use a tool must say that file is updated, not that guidance is duplicated elsewhere. |
-| **Installer** (`src/installer/`) — new asset, new target, changed layout | Name **which targets** are affected (Claude Code is the only default target; Gemini CLI is opt-in and MCP-entry-only). Say how **markers** are handled, so install is idempotent and uninstall fully reverses. Require a **CHANGELOG entry** — installer regressions break every new install silently. |
+| **Installer** (`src/installer/`) — new asset, new target, changed layout | Name **which targets** are affected (Claude Code and Gemini CLI both get the full surface — MCP entry, steering, hooks, commands, skills, subagent — except the Claude-only status line; `specship install` with no target wires the agent it runs under). Say how **markers** are handled, so install is idempotent and uninstall fully reverses. Require a **CHANGELOG entry** — installer regressions break every new install silently. |
 | **Retrieval** — anything that changes how an answer is assembled | The budget is **tool-call count + wall-clock latency**, not tokens. A flow question must still resolve in 1–5 specship calls with zero Read/Grep. An acceptance bullet that lets the answer get slower or need more calls is a regression, however good the output looks. |
 | **Extraction** (`src/extraction/`) — new language, new node/edge type | Use the **exact `NodeKind` / `EdgeKind` strings** from `src/types.ts`; inventing a kind silently drops the data. Any new SQL or grammar `.wasm` must be added to **`copy-assets`** or it won't ship in the package. |
 

package/lib/dist/spec-lint/lint.d.ts

@@ -20,7 +20,7 @@ export type LintSeverity = 'error' | 'warning';
  * code (`spec_missing_id`, `spec_stranded_id`, `spec_bare_path_ref`,
  * `spec_acceptance_parent_mismatch`) so one vocabulary spans both layers.
  */
-export type LintCode = 'spec_duplicate_id' | 'spec_orphan_acceptance_parent' | 'spec_requirement_without_acceptance' | 'spec_needs_review_marker' | 'spec_unknown_evidence_kind' | 'spec_external_fact_missing_provenance' | 'spec_malformed_enforced_rule' | 'spec_no_negative_case' | 'spec_missing_non_goals' | 'spec_missing_test_plan' | 'spec_requirement_without_rfc2119' | string;
+export type LintCode = 'spec_duplicate_id' | 'spec_duplicate_id_cross_file' | 'spec_orphan_acceptance_parent' | 'spec_requirement_without_acceptance' | 'spec_needs_review_marker' | 'spec_unknown_evidence_kind' | 'spec_external_fact_missing_provenance' | 'spec_malformed_enforced_rule' | 'spec_no_negative_case' | 'spec_missing_non_goals' | 'spec_missing_test_plan' | 'spec_requirement_without_rfc2119' | string;
 export interface LintFinding {
     code: LintCode;
     severity: LintSeverity;
@@ -47,6 +47,31 @@ export interface LintReport {
     /** The exit-code predicate (A3): errors fail, warnings alone do not. */
     hasErrors: boolean;
 }
+/**
+ * Every `<!-- id: X -->` declaration in a spec file, in line order (1-indexed).
+ * A brief or design transcript declares nothing — it is not a spec, so its
+ * markers (quoted from elsewhere) must not collide with real ones.
+ */
+export declare function collectIdDeclarations(filePath: string, source: string): Array<{
+    id: string;
+    line: number;
+}>;
+/** Where one id is declared: a project-relative file and a 1-indexed line. */
+export interface IdDeclarationSite {
+    filePath: string;
+    line: number;
+}
+/**
+ * Ids declared in more than one spec file (REQ-MULTIDEV-001). The persistence
+ * layer upserts by id, so after a merge where two branches picked the same id
+ * in different files, one section silently replaces the other. Repeats inside a
+ * single file are `spec_duplicate_id`'s job and are not reported here.
+ *
+ * Emits one error per colliding id per declaring file, anchored at that file's
+ * first declaration, with every `path:line` listed (sorted) in the message.
+ * Callers decide which of the returned findings belong to a linted file.
+ */
+export declare function findCrossFileDuplicates(decls: Map<string, IdDeclarationSite[]>): LintFinding[];
 /**
  * Lint one spec file's source. `filePath` is used verbatim in findings, so
  * callers should pass a project-relative path.

package/lib/dist/spec-lint/lint.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"lint.d.ts","sourceRoot":"","sources":["../../src/spec-lint/lint.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;GAeG;AASH,MAAM,MAAM,YAAY,GAAG,OAAO,GAAG,SAAS,CAAC;AAE/C;;;;GAIG;AACH,MAAM,MAAM,QAAQ,GAEhB,mBAAmB,GACnB,8BAA8B,GAC9B,+BAA+B,GAC/B,qCAAqC,GACrC,0BAA0B,GAC1B,4BAA4B,GAC5B,uCAAuC,GACvC,8BAA8B,GAE9B,uBAAuB,GACvB,wBAAwB,GACxB,wBAAwB,GACxB,kCAAkC,GAElC,MAAM,CAAC;AAEX,MAAM,WAAW,WAAW;IAC1B,IAAI,EAAE,QAAQ,CAAC;IACf,QAAQ,EAAE,YAAY,CAAC;IACvB,8CAA8C;IAC9C,QAAQ,EAAE,MAAM,CAAC;IACjB,gDAAgD;IAChD,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,yDAAyD;IACzD,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,cAAc;IAC7B,QAAQ,EAAE,MAAM,CAAC;IACjB,QAAQ,EAAE,WAAW,EAAE,CAAC;IACxB,UAAU,EAAE,MAAM,CAAC;IACnB,YAAY,EAAE,MAAM,CAAC;CACtB;AAED,MAAM,WAAW,UAAU;IACzB,4EAA4E;IAC5E,KAAK,EAAE,cAAc,EAAE,CAAC;IACxB,YAAY,EAAE,MAAM,CAAC;IACrB,UAAU,EAAE,MAAM,CAAC;IACnB,YAAY,EAAE,MAAM,CAAC;IACrB,wEAAwE;IACxE,SAAS,EAAE,OAAO,CAAC;CACpB;AAkHD;;;;GAIG;AACH,wBAAgB,qBAAqB,CAAC,QAAQ,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,KAAK,CAAC;IAAE,EAAE,EAAE,MAAM,CAAC;IAAC,IAAI,EAAE,MAAM,CAAA;CAAE,CAAC,CAS3G;AAED,8EAA8E;AAC9E,MAAM,WAAW,iBAAiB;IAChC,QAAQ,EAAE,MAAM,CAAC;IACjB,IAAI,EAAE,MAAM,CAAC;CACd;AAED;;;;;;;;;GASG;AACH,wBAAgB,uBAAuB,CAAC,KAAK,EAAE,GAAG,CAAC,MAAM,EAAE,iBAAiB,EAAE,CAAC,GAAG,WAAW,EAAE,CAkB9F;AAED;;;GAGG;AACH,wBAAgB,cAAc,CAAC,QAAQ,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,WAAW,EAAE,CAwK9E;AA+DD,MAAM,WAAW,WAAW;IAC1B,iFAAiF;IACjF,WAAW,CAAC,EAAE,MAAM,CAAC;CACtB;AAED;;;;GAIG;AACH,wBAAgB,SAAS,CAAC,KAAK,EAAE,MAAM,EAAE,EAAE,OAAO,GAAE,WAAgB,GAAG,UAAU,CA0GhF;AAED;;;;GAIG;AACH,wBAAgB,gBAAgB,CAAC,MAAM,EAAE,UAAU,GAAG,MAAM,CAc3D;AAED;;;;;;GAMG;AACH,wBAAgB,UAAU,CACxB,IAAI,GAAE,MAAM,EAAO,EACnB,OAAO,GAAE,WAAgB,GACxB;IAAE,MAAM,EAAE,MAAM,CAAC;IAAC,QAAQ,EAAE,MAAM,CAAA;CAAE,CAQtC"}

package/lib/dist/spec-lint/lint.js

@@ -49,6 +49,8 @@ var __importStar = (this && this.__importStar) || (function () {
     };
 })();
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.collectIdDeclarations = collectIdDeclarations;
+exports.findCrossFileDuplicates = findCrossFileDuplicates;
 exports.lintSpecSource = lintSpecSource;
 exports.lintSpecs = lintSpecs;
 exports.formatLintReport = formatLintReport;
@@ -152,6 +154,54 @@ function lintDomainFact(specs, source, add) {
         });
     }
 }
+/**
+ * Every `<!-- id: X -->` declaration in a spec file, in line order (1-indexed).
+ * A brief or design transcript declares nothing — it is not a spec, so its
+ * markers (quoted from elsewhere) must not collide with real ones.
+ */
+function collectIdDeclarations(filePath, source) {
+    if (isNonSpecArtifact(filePath))
+        return [];
+    const out = [];
+    const lines = source.split(/\r?\n/);
+    for (let i = 0; i < lines.length; i++) {
+        const id = (lines[i] ?? '').match(ID_COMMENT_LINE)?.[1];
+        if (id)
+            out.push({ id, line: i + 1 });
+    }
+    return out;
+}
+/**
+ * Ids declared in more than one spec file (REQ-MULTIDEV-001). The persistence
+ * layer upserts by id, so after a merge where two branches picked the same id
+ * in different files, one section silently replaces the other. Repeats inside a
+ * single file are `spec_duplicate_id`'s job and are not reported here.
+ *
+ * Emits one error per colliding id per declaring file, anchored at that file's
+ * first declaration, with every `path:line` listed (sorted) in the message.
+ * Callers decide which of the returned findings belong to a linted file.
+ */
+function findCrossFileDuplicates(decls) {
+    const out = [];
+    for (const [id, sites] of decls) {
+        const byFile = new Map();
+        for (const s of sites) {
+            const first = byFile.get(s.filePath);
+            if (first === undefined || s.line < first)
+                byFile.set(s.filePath, s.line);
+        }
+        if (byFile.size < 2)
+            continue;
+        const listed = [...sites]
+            .sort((a, b) => a.filePath.localeCompare(b.filePath) || a.line - b.line)
+            .map((s) => `${s.filePath}:${s.line}`);
+        const message = `ID ${id} is declared in ${byFile.size} files: ${listed.join(', ')}. Ids are global — the index keeps only one of these sections, so rename all but one.`;
+        for (const [filePath, line] of byFile) {
+            out.push({ code: 'spec_duplicate_id_cross_file', severity: 'error', filePath, line, specId: id, message });
+        }
+    }
+    return out;
+}
 /**
  * Lint one spec file's source. `filePath` is used verbatim in findings, so
  * callers should pass a project-relative path.
@@ -180,23 +230,19 @@ function lintSpecSource(filePath, source) {
     // 2. Duplicate ids within the file (A1). The persistence layer upserts by id,
     //    so the LAST occurrence wins and the earlier section silently vanishes.
     const seen = new Map();
-    for (let i = 0; i < lines.length; i++) {
-        const m = (lines[i] ?? '').match(ID_COMMENT_LINE);
-        const id = m?.[1];
-        if (!id)
-            continue;
+    for (const { id, line } of collectIdDeclarations(filePath, source)) {
         const first = seen.get(id);
         if (first !== undefined) {
             add({
                 code: 'spec_duplicate_id',
                 severity: 'error',
-                line: i + 1,
+                line,
                 specId: id,
                 message: `Duplicate id ${id} (first declared on line ${first}). The last occurrence overwrites earlier ones, so the earlier section is lost.`,
             });
         }
         else {
-            seen.set(id, i + 1);
+            seen.set(id, line);
         }
     }
     // A domain fact keeps the extractor's verdict (its frontmatter can genuinely
@@ -388,6 +434,16 @@ function collectSpecFiles(target, out) {
 function lintSpecs(paths, options = {}) {
     const projectRoot = options.projectRoot ?? process.cwd();
     const files = [];
+    const decls = new Map();
+    const recordDeclarations = (rel, source) => {
+        for (const { id, line } of collectIdDeclarations(rel, source)) {
+            const sites = decls.get(id);
+            if (sites)
+                sites.push({ filePath: rel, line });
+            else
+                decls.set(id, [{ filePath: rel, line }]);
+        }
+    };
     const targets = paths.length > 0 ? paths : [path.join(projectRoot, 'specs')];
     const absFiles = [];
     for (const target of targets) {
@@ -433,6 +489,7 @@ function lintSpecs(paths, options = {}) {
             continue;
         }
         const findings = lintSpecSource(rel, source);
+        recordDeclarations(rel, source);
         files.push({
             filePath: rel,
             findings,
@@ -440,6 +497,38 @@ function lintSpecs(paths, options = {}) {
             warningCount: findings.filter((f) => f.severity === 'warning').length,
         });
     }
+    // Cross-file duplicate ids (REQ-MULTIDEV-001). The rest of the checkout's
+    // specs/ is scanned for declarations even when only a subset was linted
+    // (A4), so a linted file colliding with an unlinted one still fails; the
+    // unlinted file only contributes sites and gets no report entry.
+    const linted = new Set(absFiles);
+    const corpus = [];
+    collectSpecFiles(path.join(projectRoot, 'specs'), corpus);
+    for (const abs of [...new Set(corpus)].sort()) {
+        if (linted.has(abs))
+            continue;
+        let source;
+        try {
+            source = fs.readFileSync(abs, 'utf-8');
+        }
+        catch {
+            continue;
+        }
+        recordDeclarations(path.relative(projectRoot, abs) || abs, source);
+    }
+    const reportsByPath = new Map(files.map((f) => [f.filePath, f]));
+    const touched = new Set();
+    for (const finding of findCrossFileDuplicates(decls)) {
+        const report = reportsByPath.get(finding.filePath);
+        if (!report)
+            continue; // an unlinted file — named in the message only
+        report.findings.push(finding);
+        touched.add(report);
+    }
+    for (const report of touched) {
+        report.findings = sortFindings(report.findings);
+        report.errorCount = report.findings.filter((f) => f.severity === 'error').length;
+    }
     files.sort((a, b) => a.filePath.localeCompare(b.filePath));
     const errorCount = files.reduce((n, f) => n + f.errorCount, 0);
     const warningCount = files.reduce((n, f) => n + f.warningCount, 0);

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package/lib/dist/sync/worktree.d.ts

@@ -51,4 +51,52 @@ export declare function worktreeMismatchWarning(m: WorktreeIndexMismatch): strin
  * the agent is already reading — a multi-line block would bury the result.
  */
 export declare function worktreeMismatchNotice(m: WorktreeIndexMismatch): string;
+/**
+ * The checkout's current HEAD: commit sha plus branch name (`null` on a
+ * detached HEAD). Returns null outside a git repo, when git is missing, or
+ * when the repo has no commit yet. Never throws.
+ */
+export declare function readGitHead(dir: string): {
+    branch: string | null;
+    commit: string;
+} | null;
+/**
+ * Fingerprint of the uncommitted tracked state under `dir` (outside
+ * `.specship/`): a hash over `git status --porcelain --untracked-files=no`
+ * plus `git diff HEAD`. Two calls return the same value exactly when the
+ * working tree's tracked changes are identical — so an index synced after an
+ * edit is fresh until the edits change again. Null when git can't answer.
+ */
+export declare function uncommittedTrackedFingerprint(dir: string): string | null;
+export type IndexStaleReason = 'commit-moved' | 'uncommitted-changes';
+export interface IndexFreshness {
+    /** Branch the index was built on; null when built on a detached HEAD. */
+    indexedBranch: string | null;
+    indexedCommit: string;
+    /** Branch currently checked out; null on a detached HEAD. */
+    headBranch: string | null;
+    headCommit: string;
+    stale: boolean;
+    reasons: IndexStaleReason[];
+}
+/**
+ * Pure staleness verdict. `worktreeChanged` is true when the checkout's
+ * uncommitted tracked changes differ from those present at index time.
+ */
+export declare function computeIndexFreshness(recorded: {
+    branch: string | null;
+    commit: string;
+}, head: {
+    branch: string | null;
+    commit: string;
+}, worktreeChanged: boolean): IndexFreshness;
+/** One-line staleness notice naming `specship sync` as the fix. */
+export declare function indexStaleNotice(f: IndexFreshness): string;
+/** `ref (branch)` / `ref (detached)` label for human output. */
+export declare function formatRevision(branch: string | null, commit: string): string;
+/**
+ * The `specship status --json` fields for a freshness verdict. Empty when
+ * freshness is null (no git / nothing recorded), so the keys are absent.
+ */
+export declare function indexFreshnessJsonFields(f: IndexFreshness | null): Record<string, unknown>;
 //# sourceMappingURL=worktree.d.ts.map

package/lib/dist/sync/worktree.d.ts.map

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