@sparkleideas/neural 3.5.2-patch.1

package/README.md

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+# @claude-flow/neural
+
+[![npm version](https://img.shields.io/npm/v/@claude-flow/neural.svg)](https://www.npmjs.com/package/@claude-flow/neural)
+[![npm downloads](https://img.shields.io/npm/dm/@claude-flow/neural.svg)](https://www.npmjs.com/package/@claude-flow/neural)
+[![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](https://opensource.org/licenses/MIT)
+[![TypeScript](https://img.shields.io/badge/TypeScript-5.0+-blue.svg)](https://www.typescriptlang.org/)
+[![AI Learning](https://img.shields.io/badge/AI-Self--Learning-purple.svg)](https://github.com/ruvnet/claude-flow)
+
+> Self-Optimizing Neural Architecture (SONA) module for Claude Flow V3 - adaptive learning, trajectory tracking, and pattern-based optimization.
+
+## Features
+
+- **SONA Learning** - Self-Optimizing Neural Architecture with <0.05ms adaptation time
+- **5 Learning Modes** - Real-time, Balanced, Research, Edge, and Batch modes
+- **9 RL Algorithms** - PPO, A2C, DQN, Q-Learning, SARSA, Decision Transformer, and more
+- **LoRA Integration** - Low-Rank Adaptation for efficient fine-tuning
+- **EWC++ Memory** - Elastic Weight Consolidation for continual learning without forgetting
+- **Trajectory Tracking** - Record and learn from agent execution paths
+- **Pattern Recognition** - Automatic pattern extraction and reuse
+
+## Installation
+
+```bash
+npm install @claude-flow/neural
+```
+
+## Quick Start
+
+```typescript
+import { SONAManager, createSONAManager } from '@claude-flow/neural';
+
+// Create SONA manager
+const sona = createSONAManager('balanced');
+await sona.initialize();
+
+// Begin trajectory tracking
+const trajectoryId = sona.beginTrajectory('code-review-task', 'development');
+
+// Record steps
+sona.recordStep(trajectoryId, 'analyze-code', 0.8, stateEmbedding, {
+  filesAnalyzed: 5,
+  issuesFound: 2
+});
+
+sona.recordStep(trajectoryId, 'generate-feedback', 0.9, newStateEmbedding);
+
+// Complete trajectory
+const trajectory = sona.completeTrajectory(trajectoryId);
+
+// Find similar patterns for guidance
+const patterns = await sona.findSimilarPatterns(contextEmbedding, 3);
+```
+
+## Learning Modes
+
+| Mode | Adaptation | Quality | Memory | Use Case |
+|------|------------|---------|--------|----------|
+| **real-time** | <0.5ms | 70%+ | 25MB | Production, low-latency |
+| **balanced** | <18ms | 75%+ | 50MB | General purpose |
+| **research** | <100ms | 95%+ | 100MB | Deep exploration |
+| **edge** | <1ms | 80%+ | 5MB | Resource-constrained |
+| **batch** | <50ms | 85%+ | 75MB | High-throughput |
+
+```typescript
+// Switch modes dynamically
+await sona.setMode('research');
+
+// Get current configuration
+const { mode, config, optimizations } = sona.getConfig();
+```
+
+## API Reference
+
+### SONA Manager
+
+```typescript
+import { SONAManager } from '@claude-flow/neural';
+
+const sona = new SONAManager('balanced');
+await sona.initialize();
+
+// Trajectory Management
+const trajectoryId = sona.beginTrajectory(context, domain);
+sona.recordStep(trajectoryId, action, reward, stateEmbedding, metadata);
+const trajectory = sona.completeTrajectory(trajectoryId, finalQuality);
+
+// Pattern Matching
+const patterns = await sona.findSimilarPatterns(embedding, k);
+const pattern = sona.storePattern({ name, strategy, embedding, domain });
+sona.updatePatternUsage(patternId, quality);
+
+// Learning
+await sona.triggerLearning('manual');
+const output = await sona.applyAdaptations(input, domain);
+
+// Statistics
+const stats = sona.getStats();
+```
+
+### RL Algorithms
+
+```typescript
+import { PPO, A2C, DQN, QLearning, SARSA, DecisionTransformer } from '@claude-flow/neural';
+
+// Proximal Policy Optimization
+const ppo = new PPO({
+  learningRate: 0.0003,
+  epsilon: 0.2,
+  valueCoef: 0.5
+});
+
+// Advantage Actor-Critic
+const a2c = new A2C({
+  learningRate: 0.001,
+  gamma: 0.99,
+  entropyCoef: 0.01
+});
+
+// Deep Q-Network
+const dqn = new DQN({
+  learningRate: 0.001,
+  gamma: 0.99,
+  epsilon: 0.1,
+  targetUpdateFreq: 100
+});
+
+// Decision Transformer
+const dt = new DecisionTransformer({
+  contextLength: 20,
+  embeddingDim: 256,
+  numHeads: 4
+});
+```
+
+### LoRA Configuration
+
+```typescript
+// Get LoRA config for current mode
+const loraConfig = sona.getLoRAConfig();
+// {
+//   rank: 4,
+//   alpha: 8,
+//   dropout: 0.05,
+//   targetModules: ['q_proj', 'v_proj', 'k_proj', 'o_proj'],
+//   microLoRA: false
+// }
+
+// Initialize LoRA weights for a domain
+const weights = sona.initializeLoRAWeights('code-generation');
+```
+
+### EWC++ (Elastic Weight Consolidation)
+
+```typescript
+// Get EWC config
+const ewcConfig = sona.getEWCConfig();
+// {
+//   lambda: 2000,
+//   decay: 0.9,
+//   fisherSamples: 100,
+//   minFisher: 1e-8,
+//   online: true
+// }
+
+// Consolidate after learning a new task
+sona.consolidateEWC();
+```
+
+### Event System
+
+```typescript
+// Subscribe to neural events
+sona.addEventListener((event) => {
+  switch (event.type) {
+    case 'trajectory_started':
+      console.log(`Started: ${event.trajectoryId}`);
+      break;
+    case 'trajectory_completed':
+      console.log(`Completed with quality: ${event.qualityScore}`);
+      break;
+    case 'pattern_matched':
+      console.log(`Pattern ${event.patternId} matched`);
+      break;
+    case 'learning_triggered':
+      console.log(`Learning: ${event.reason}`);
+      break;
+    case 'mode_changed':
+      console.log(`Mode: ${event.fromMode} -> ${event.toMode}`);
+      break;
+  }
+});
+```
+
+## Mode Configurations
+
+```typescript
+// Real-time mode (ultra-fast)
+{
+  loraRank: 2,
+  learningRate: 0.001,
+  batchSize: 32,
+  trajectoryCapacity: 1000,
+  qualityThreshold: 0.7,
+  maxLatencyMs: 0.5
+}
+
+// Research mode (high quality)
+{
+  loraRank: 16,
+  learningRate: 0.002,
+  batchSize: 64,
+  trajectoryCapacity: 10000,
+  qualityThreshold: 0.2,
+  maxLatencyMs: 100
+}
+```
+
+## Performance Targets
+
+| Metric | Target | Typical |
+|--------|--------|---------|
+| Adaptation latency | <0.05ms | 0.02ms |
+| Pattern retrieval | <1ms | 0.5ms |
+| Learning step | <10ms | 5ms |
+| Quality improvement | +55% | +40-60% |
+| Memory overhead | <50MB | 25-75MB |
+
+## TypeScript Types
+
+```typescript
+import type {
+  SONAMode,
+  SONAModeConfig,
+  Trajectory,
+  TrajectoryStep,
+  Pattern,
+  PatternMatch,
+  NeuralStats,
+  NeuralEvent,
+  LoRAConfig,
+  LoRAWeights,
+  EWCConfig,
+  RLAlgorithm
+} from '@claude-flow/neural';
+```
+
+## Dependencies
+
+- [@claude-flow/memory](../memory) - Memory integration
+- `@ruvector/sona` - SONA learning engine
+
+## Related Packages
+
+- [@claude-flow/memory](../memory) - Vector memory for patterns
+- [@claude-flow/integration](../integration) - agentic-flow integration
+- [@claude-flow/performance](../performance) - Benchmarking
+
+## License
+
+MIT

package/__tests__/README.md

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+# Neural Module Test Suite
+
+Comprehensive test coverage for the V3 neural module with **106 tests** across 3 test files.
+
+## Test Files
+
+### 1. `sona.test.ts` (23 tests)
+Tests for SONA Learning Engine integration with `@ruvector/sona`:
+
+**Initialization (5 tests)**
+- Balanced mode initialization
+- Real-time mode initialization
+- Research mode initialization
+- Edge mode initialization
+- Batch mode initialization
+
+**Learning from Trajectories (5 tests)**
+- Learning from complete trajectory
+- Performance target validation (<0.05ms)
+- Handling empty trajectories
+- Multi-step trajectory learning
+- Learning time tracking
+
+**Adaptation (6 tests)**
+- Behavior adaptation based on context
+- Performance target validation (<0.1ms)
+- Finding similar patterns
+- Route inference from patterns
+- Handling no patterns found
+- Adaptation time tracking
+
+**Mode Switching (2 tests)**
+- Switching between modes
+- Resetting learning state
+
+**Statistics and Monitoring (3 tests)**
+- Engine statistics retrieval
+- Learning time tracking
+- Adaptation time tracking
+
+**Engine Control (2 tests)**
+- Enable/disable engine
+- Force learning and background ticking
+- Pattern finding by embedding
+
+---
+
+### 2. `algorithms.test.ts` (44 tests)
+Tests for reinforcement learning algorithms:
+
+#### Q-Learning (8 tests)
+- Initialization
+- Q-value updates from trajectory
+- Performance target (<1ms)
+- Exploration rate decay
+- Epsilon-greedy action selection
+- Q-value retrieval
+- Eligibility traces support
+- Q-table pruning
+- Reset functionality
+
+#### SARSA (8 tests)
+- Initialization
+- SARSA rule updates
+- Expected SARSA variant
+- Action probability distribution
+- Epsilon-greedy policy
+- Eligibility traces (SARSA-lambda)
+- Short trajectory handling
+- Reset functionality
+
+#### DQN (9 tests)
+- Initialization
+- Experience replay buffer
+- DQN update mechanism
+- Performance target (<10ms)
+- Double DQN support
+- Epsilon-greedy action selection
+- Q-value retrieval
+- Target network updates
+- Circular buffer handling
+
+#### PPO (7 tests)
+- Initialization
+- Experience collection
+- PPO update with clipping
+- Performance target (<10ms for small batches)
+- GAE advantage computation
+- Policy action sampling
+- Multiple training epochs
+- Buffer clearing after update
+
+#### Decision Transformer (12 tests)
+- Initialization
+- Trajectory buffer management
+- Incomplete trajectory handling
+- Training on buffered trajectories
+- Performance target (<10ms per batch)
+- Return-conditioned action generation
+- Causal attention masking
+- Bounded trajectory buffer
+- Varying trajectory lengths
+- Returns-to-go computation
+
+---
+
+### 3. `patterns.test.ts` (39 tests)
+Tests for pattern learning and ReasoningBank:
+
+#### Pattern Extraction (9 tests)
+- Initialization
+- Trajectory storage
+- Trajectory retrieval
+- Successful trajectory judgment
+- Failed trajectory judgment
+- Strength identification
+- Weakness identification
+- Improvement suggestion generation
+- Incomplete trajectory error handling
+
+#### Memory Distillation (8 tests)
+- Successful trajectory distillation
+- Low-quality trajectory filtering
+- Automatic judgment before distillation
+- Strategy extraction
+- Key learnings extraction
+- Aggregate embedding computation
+- Distillation performance tracking
+- Memory-trajectory linking
+
+#### Retrieval with MMR (6 tests)
+- Top-k similar memory retrieval
+- MMR diversity application
+- Retrieval result structure
+- Retrieval performance tracking
+- Empty bank handling
+- K parameter respect
+
+#### Consolidation (6 tests)
+- Memory deduplication
+- Contradiction detection
+- Pattern merging
+- Old pattern pruning
+- Consolidation result structure
+- Consolidation event emission
+
+#### Pattern Management (7 tests)
+- Memory to pattern conversion
+- Pattern evolution with new experience
+- Pattern usage tracking
+- Success rate updates
+- Quality history maintenance (max 100)
+- Pattern evolution events
+- Getting all patterns
+
+#### Event System (3 tests)
+- Adding/removing event listeners
+- Consolidation event emission
+- Pattern evolution event emission
+
+---
+
+## Performance Targets
+
+All tests validate against these performance targets:
+
+| Operation | Target | Test Coverage |
+|-----------|--------|---------------|
+| SONA learn() | <0.05ms | ✓ |
+| SONA adapt() | <0.1ms | ✓ |
+| Q-Learning update | <1ms | ✓ |
+| SARSA update | <1ms | ✓ |
+| DQN update | <10ms | ✓ |
+| PPO update | <10ms | ✓ |
+| Decision Transformer train | <10ms | ✓ |
+| ReasoningBank retrieval | <10ms | ✓ |
+| ReasoningBank distillation | <10ms | ✓ |
+
+## Running Tests
+
+```bash
+# Run all tests
+npm run test
+
+# Run with coverage
+npm run test -- --coverage
+
+# Run specific test file
+npm run test sona.test.ts
+npm run test algorithms.test.ts
+npm run test patterns.test.ts
+
+# Watch mode
+npm run test -- --watch
+```
+
+## Test Coverage Goals
+
+- **Statements**: >80%
+- **Branches**: >75%
+- **Functions**: >80%
+- **Lines**: >80%
+
+## Algorithm Correctness
+
+Tests validate core algorithm implementations:
+
+1. **Q-Learning**: TD error computation, Q-table updates, exploration decay
+2. **SARSA**: On-policy updates, expected SARSA variant, eligibility traces
+3. **DQN**: Experience replay, target networks, double DQN, dueling architecture
+4. **PPO**: Clipped surrogate objective, GAE, value clipping, entropy bonus
+5. **Decision Transformer**: Sequence modeling, causal attention, return conditioning
+
+## Pattern Learning Pipeline
+
+Tests validate the 4-step ReasoningBank pipeline:
+
+1. **RETRIEVE**: Top-k memory injection with MMR diversity (6 tests)
+2. **JUDGE**: LLM-as-judge trajectory evaluation (9 tests)
+3. **DISTILL**: Extract strategy memories from trajectories (8 tests)
+4. **CONSOLIDATE**: Dedup, detect contradictions, prune patterns (6 tests)
+
+## Mocking Strategy
+
+- **@ruvector/sona**: Mocked to isolate SONA integration tests
+- **All algorithms**: Pure TypeScript, no mocking needed
+- **ReasoningBank**: Pure TypeScript, no mocking needed
+
+## Notes
+
+- Tests use Vitest for fast execution
+- All tests are isolated with `beforeEach` setup
+- Performance tests allow overhead for mocking/setup
+- Helper functions generate realistic test trajectories
+- Tests cover edge cases (empty trajectories, incomplete data, etc.)