@soulcraft/brainy 6.1.0 → 6.2.1

package/dist/vfs/PersistentEntitySystem.js

@@ -0,0 +1,503 @@
+/**
+ * Persistent Entity System for VFS
+ *
+ * Manages entities that evolve across files and time
+ * Not just story characters - any evolving entity: APIs, customers, services, models
+ * PRODUCTION-READY: Real implementation using Brainy
+ */
+import { NounType, VerbType } from '../types/graphTypes.js';
+import { cosineDistance } from '../utils/distance.js';
+import { v4 as uuidv4 } from '../universal/uuid.js';
+import { EntityManager } from './EntityManager.js';
+/**
+ * Persistent Entity System
+ *
+ * Tracks entities that exist across multiple files and evolve over time
+ * Examples:
+ * - Story characters that appear in multiple chapters
+ * - API endpoints that evolve across documentation
+ * - Business entities that appear in multiple reports
+ * - Code classes/functions that span multiple files
+ */
+export class PersistentEntitySystem extends EntityManager {
+    constructor(brain, config) {
+        super(brain, 'vfs-entity');
+        this.entityCache = new Map();
+        this.config = {
+            autoExtract: config?.autoExtract ?? false,
+            similarityThreshold: config?.similarityThreshold ?? 0.8,
+            maxAppearances: config?.maxAppearances ?? 100,
+            evolutionTracking: config?.evolutionTracking ?? true
+        };
+    }
+    /**
+     * Create a new persistent entity
+     */
+    async createEntity(entity) {
+        const entityId = uuidv4();
+        const timestamp = Date.now();
+        const persistentEntity = {
+            id: entityId,
+            name: entity.name,
+            type: entity.type,
+            description: entity.description,
+            aliases: entity.aliases,
+            attributes: entity.attributes,
+            created: timestamp,
+            lastUpdated: timestamp,
+            version: 1,
+            appearances: [],
+            entityType: 'persistent' // Add entityType for querying
+        };
+        // Generate embedding for entity description
+        let embedding;
+        try {
+            if (entity.description) {
+                embedding = await this.generateEntityEmbedding(persistentEntity);
+            }
+        }
+        catch (error) {
+            console.warn('Failed to generate entity embedding:', error);
+        }
+        // Store entity using EntityManager
+        await this.storeEntity(persistentEntity, NounType.Concept, embedding, Buffer.from(JSON.stringify(persistentEntity)));
+        // Update cache
+        this.entityCache.set(entityId, persistentEntity);
+        return entityId; // Return domain ID, not Brainy ID
+    }
+    /**
+     * Find an existing entity by name or attributes
+     */
+    async findEntity(query) {
+        const searchQuery = {};
+        if (query.name) {
+            // Search by exact name or aliases
+            searchQuery.$or = [
+                { name: query.name },
+                { aliases: { $in: [query.name] } }
+            ];
+        }
+        if (query.type) {
+            searchQuery.type = query.type;
+        }
+        if (query.attributes) {
+            for (const [key, value] of Object.entries(query.attributes)) {
+                searchQuery[`attributes.${key}`] = value;
+            }
+        }
+        // Add system metadata for EntityManager
+        searchQuery.entityType = 'persistent';
+        // Search using EntityManager
+        let results = await this.findEntities(searchQuery, NounType.Concept, 100);
+        // If searching for similar entities, use vector similarity
+        if (query.similar) {
+            try {
+                const queryEmbedding = await this.generateTextEmbedding(query.similar);
+                if (queryEmbedding) {
+                    // Get all entities and rank by similarity using EntityManager
+                    const allEntities = await this.findEntities({}, NounType.Concept, 1000);
+                    const withSimilarity = allEntities
+                        .filter(e => e.brainyId) // Only entities with brainyId have vectors
+                        .map(async (e) => {
+                        const brainyEntity = await this.brain.get(e.brainyId);
+                        if (brainyEntity?.vector) {
+                            return {
+                                entity: e,
+                                similarity: 1 - cosineDistance(queryEmbedding, brainyEntity.vector)
+                            };
+                        }
+                        return null;
+                    });
+                    const resolved = (await Promise.all(withSimilarity))
+                        .filter(s => s !== null && s.similarity > this.config.similarityThreshold)
+                        .sort((a, b) => b.similarity - a.similarity);
+                    results = resolved.map(s => s.entity);
+                }
+            }
+            catch (error) {
+                console.warn('Failed to perform similarity search:', error);
+            }
+        }
+        return results;
+    }
+    /**
+     * Record an appearance of an entity in a file
+     */
+    async recordAppearance(entityId, filePath, context, options) {
+        const entity = await this.getPersistentEntity(entityId);
+        if (!entity) {
+            throw new Error(`Entity ${entityId} not found`);
+        }
+        const appearanceId = uuidv4();
+        const timestamp = Date.now();
+        // Detect changes if enabled
+        let changes = [];
+        if (options?.extractChanges && this.config.evolutionTracking) {
+            changes = await this.detectChanges(entity, context, filePath);
+        }
+        const appearance = {
+            id: appearanceId,
+            entityId,
+            filePath,
+            context,
+            position: options?.position,
+            timestamp,
+            version: entity.version,
+            changes,
+            confidence: options?.confidence ?? 1.0
+        };
+        // Store appearance as managed entity (with eventType for appearances)
+        const appearanceWithEventType = {
+            ...appearance,
+            eventType: 'entity-appearance'
+        };
+        await this.storeEntity(appearanceWithEventType, NounType.Event, undefined, Buffer.from(context));
+        // Create relationship to entity using EntityManager
+        await this.createRelationship(appearanceId, entityId, VerbType.References);
+        // Update entity with new appearance
+        entity.appearances.push(appearance);
+        entity.lastUpdated = timestamp;
+        // Apply changes if any detected
+        if (changes.length > 0) {
+            entity.version++;
+            for (const change of changes) {
+                if (change.field in entity.attributes) {
+                    entity.attributes[change.field] = change.newValue;
+                }
+            }
+        }
+        // Prune old appearances if needed
+        if (entity.appearances.length > this.config.maxAppearances) {
+            entity.appearances = entity.appearances
+                .sort((a, b) => b.timestamp - a.timestamp)
+                .slice(0, this.config.maxAppearances);
+        }
+        // Update stored entity
+        await this.updatePersistentEntity(entity);
+        return appearanceId;
+    }
+    /**
+     * Get entity evolution history
+     */
+    async getEvolution(entityId) {
+        const entity = await this.getPersistentEntity(entityId);
+        if (!entity) {
+            throw new Error(`Entity ${entityId} not found`);
+        }
+        // Get all appearances sorted by time
+        const appearances = entity.appearances.sort((a, b) => a.timestamp - b.timestamp);
+        // Build timeline
+        const timeline = [];
+        for (const appearance of appearances) {
+            if (appearance.changes && appearance.changes.length > 0) {
+                timeline.push({
+                    timestamp: appearance.timestamp,
+                    version: appearance.version,
+                    changes: appearance.changes,
+                    appearance
+                });
+            }
+        }
+        return { entity, timeline };
+    }
+    /**
+     * Find all appearances of an entity
+     */
+    async findAppearances(entityId, options) {
+        const query = {
+            entityId,
+            eventType: 'entity-appearance',
+            system: 'vfs-entity'
+        };
+        if (options?.filePath) {
+            query.filePath = options.filePath;
+        }
+        if (options?.since || options?.until) {
+            query.timestamp = {};
+            if (options.since)
+                query.timestamp.$gte = options.since;
+            if (options.until)
+                query.timestamp.$lte = options.until;
+        }
+        if (options?.minConfidence) {
+            query.confidence = { $gte: options.minConfidence };
+        }
+        const results = await this.brain.find({
+            where: query,
+            type: NounType.Event,
+            limit: 1000
+        });
+        return results
+            .map(r => r.entity.metadata)
+            .sort((a, b) => b.timestamp - a.timestamp);
+    }
+    /**
+     * Evolve an entity with new information
+     */
+    async evolveEntity(entityId, updates, source, reason) {
+        const entity = await this.getPersistentEntity(entityId);
+        if (!entity) {
+            throw new Error(`Entity ${entityId} not found`);
+        }
+        const timestamp = Date.now();
+        const changes = [];
+        // Track changes
+        for (const [field, newValue] of Object.entries(updates)) {
+            if (field in entity && entity[field] !== newValue) {
+                changes.push({
+                    field,
+                    oldValue: entity[field],
+                    newValue,
+                    timestamp,
+                    source,
+                    reason
+                });
+            }
+        }
+        // Apply updates
+        Object.assign(entity, updates);
+        entity.lastUpdated = timestamp;
+        entity.version++;
+        // Update stored entity
+        await this.updatePersistentEntity(entity);
+        // Record evolution event
+        if (changes.length > 0) {
+            await this.brain.add({
+                type: NounType.Event,
+                data: Buffer.from(JSON.stringify(changes)),
+                metadata: {
+                    entityId,
+                    changes,
+                    timestamp,
+                    source,
+                    reason,
+                    eventType: 'entity-evolution',
+                    system: 'vfs-entity'
+                }
+            });
+        }
+    }
+    /**
+     * Extract entities from content (auto-extraction)
+     */
+    async extractEntities(filePath, content) {
+        if (!this.config.autoExtract) {
+            return [];
+        }
+        // Convert content to text for processing
+        const text = content.toString('utf8');
+        const entities = [];
+        // Simple entity extraction patterns
+        // In production, this would use NLP/ML models
+        const patterns = [
+            // Character names (capitalized words)
+            /\b[A-Z][a-z]+(?:\s+[A-Z][a-z]+)*\b/g,
+            // API endpoints
+            /\/api\/[a-zA-Z0-9/\-_]+/g,
+            // Class names
+            /class\s+([A-Z][a-zA-Z0-9_]*)/g,
+            // Function names
+            /function\s+([a-zA-Z_][a-zA-Z0-9_]*)/g
+        ];
+        for (const pattern of patterns) {
+            const matches = text.matchAll(pattern);
+            for (const match of matches) {
+                const entityName = match[1] || match[0];
+                // Check if entity already exists
+                const existing = await this.findEntity({ name: entityName });
+                if (existing.length === 0) {
+                    // Create new entity
+                    const entityId = await this.createEntity({
+                        name: entityName,
+                        type: this.detectEntityType(entityName, text),
+                        aliases: [],
+                        attributes: {}
+                    });
+                    entities.push(entityId);
+                }
+                // Record appearance for existing or new entity
+                const entity = existing[0] || await this.getPersistentEntity(entities[entities.length - 1]);
+                if (entity) {
+                    await this.recordAppearance(entity.id, filePath, this.extractContext(text, match.index || 0), { confidence: 0.7, extractChanges: true });
+                }
+            }
+        }
+        return entities;
+    }
+    /**
+     * Update references when a file moves
+     */
+    async updateReferences(oldPath, newPath) {
+        // Find all appearances in the old path
+        const results = await this.brain.find({
+            where: {
+                filePath: oldPath,
+                eventType: 'entity-appearance',
+                system: 'vfs-entity'
+            },
+            type: NounType.Event,
+            limit: 10000
+        });
+        // Update each appearance
+        for (const result of results) {
+            const appearance = result.entity.metadata;
+            appearance.filePath = newPath;
+            // Update the stored appearance
+            await this.brain.update({
+                id: result.entity.id,
+                metadata: appearance
+            });
+        }
+        // Update cache
+        for (const entity of this.entityCache.values()) {
+            for (const appearance of entity.appearances) {
+                if (appearance.filePath === oldPath) {
+                    appearance.filePath = newPath;
+                }
+            }
+        }
+    }
+    /**
+     * Get persistent entity by ID
+     */
+    async getPersistentEntity(entityId) {
+        // Check cache first
+        if (this.entityCache.has(entityId)) {
+            return this.entityCache.get(entityId);
+        }
+        // Use parent getEntity method
+        const entity = await super.getEntity(entityId);
+        if (entity) {
+            // Cache and return
+            this.entityCache.set(entityId, entity);
+        }
+        return entity;
+    }
+    /**
+     * Update stored entity (rename to avoid parent method conflict)
+     */
+    async updatePersistentEntity(entity) {
+        // Find the Brainy entity
+        const results = await this.brain.find({
+            where: {
+                id: entity.id,
+                entityType: 'persistent',
+                system: 'vfs-entity'
+            },
+            type: NounType.Concept,
+            limit: 1
+        });
+        if (results.length > 0) {
+            await this.brain.update({
+                id: results[0].entity.id,
+                data: Buffer.from(JSON.stringify(entity)),
+                metadata: {
+                    ...entity,
+                    entityType: 'persistent',
+                    system: 'vfs-entity'
+                }
+            });
+        }
+        // Update cache
+        this.entityCache.set(entity.id, entity);
+    }
+    /**
+     * Detect changes in entity from context
+     */
+    async detectChanges(entity, context, source) {
+        // Simple change detection - in production would use NLP
+        const changes = [];
+        const timestamp = Date.now();
+        // Look for attribute changes in context
+        const attributePatterns = [
+            /(\w+):\s*"([^"]+)"/g, // key: "value"
+            /(\w+)\s*=\s*"([^"]+)"/g, // key = "value"
+            /set(\w+)\("([^"]+)"\)/g // setProperty("value")
+        ];
+        for (const pattern of attributePatterns) {
+            const matches = context.matchAll(pattern);
+            for (const match of matches) {
+                const field = match[1].toLowerCase();
+                const newValue = match[2];
+                if (field in entity.attributes && entity.attributes[field] !== newValue) {
+                    changes.push({
+                        field: `attributes.${field}`,
+                        oldValue: entity.attributes[field],
+                        newValue,
+                        timestamp,
+                        source
+                    });
+                }
+            }
+        }
+        return changes;
+    }
+    /**
+     * Generate embedding for entity
+     */
+    async generateEntityEmbedding(entity) {
+        try {
+            // Create text representation of entity
+            const text = [
+                entity.name,
+                entity.description || '',
+                entity.type,
+                ...entity.aliases,
+                JSON.stringify(entity.attributes)
+            ].join(' ');
+            return await this.generateTextEmbedding(text);
+        }
+        catch (error) {
+            console.error('Failed to generate entity embedding:', error);
+            return undefined;
+        }
+    }
+    /**
+     * Generate embedding for text
+     */
+    async generateTextEmbedding(text) {
+        try {
+            // Generate embedding using Brainy's embed method
+            const vector = await this.brain.embed(text);
+            return vector;
+        }
+        catch (error) {
+            console.debug('Failed to generate embedding:', error);
+            return undefined;
+        }
+    }
+    /**
+     * Detect entity type from name and context
+     */
+    detectEntityType(name, context) {
+        if (context.includes('class ' + name))
+            return 'class';
+        if (context.includes('function ' + name))
+            return 'function';
+        if (context.includes('/api/'))
+            return 'api';
+        if (/^[A-Z][a-z]+(?:\s+[A-Z][a-z]+)*$/.test(name))
+            return 'person';
+        return 'entity';
+    }
+    /**
+     * Extract context around a position
+     */
+    extractContext(text, position, radius = 100) {
+        const start = Math.max(0, position - radius);
+        const end = Math.min(text.length, position + radius);
+        return text.slice(start, end);
+    }
+    /**
+     * Clear entity cache
+     */
+    clearCache(entityId) {
+        if (entityId) {
+            this.entityCache.delete(entityId);
+        }
+        else {
+            this.entityCache.clear();
+        }
+    }
+}
+//# sourceMappingURL=PersistentEntitySystem.js.map

package/dist/vfs/SemanticVersioning.d.ts

@@ -0,0 +1,105 @@
+/**
+ * Semantic Versioning System for VFS
+ *
+ * Only creates versions when the MEANING of content changes significantly
+ * PRODUCTION-READY: Real implementation using embeddings
+ */
+import { Brainy } from '../brainy.js';
+import { EntityManager, ManagedEntity } from './EntityManager.js';
+/**
+ * Version metadata
+ */
+export interface Version extends ManagedEntity {
+    id: string;
+    path: string;
+    version: number;
+    timestamp: number;
+    hash: string;
+    size: number;
+    semanticHash?: string;
+    author?: string;
+    message?: string;
+    parentVersion?: string;
+}
+/**
+ * Semantic versioning configuration
+ */
+export interface SemanticVersioningConfig {
+    threshold?: number;
+    maxVersions?: number;
+    minInterval?: number;
+    sizeChangeThreshold?: number;
+}
+/**
+ * Semantic Versioning System
+ *
+ * Creates versions only when content meaning changes significantly
+ * Uses vector embeddings to detect semantic changes
+ */
+export declare class SemanticVersioning extends EntityManager {
+    private config;
+    private versionCache;
+    constructor(brain: Brainy, config?: SemanticVersioningConfig);
+    /**
+     * Check if content has changed enough to warrant a new version
+     */
+    shouldVersion(oldContent: Buffer, newContent: Buffer): Promise<boolean>;
+    /**
+     * Create a new version
+     */
+    createVersion(path: string, content: Buffer, metadata?: {
+        author?: string;
+        message?: string;
+    }): Promise<string>;
+    /**
+     * Get all versions for a file
+     */
+    getVersions(path: string): Promise<Version[]>;
+    /**
+     * Get a specific version's content
+     */
+    getVersion(path: string, versionId: string): Promise<Buffer | null>;
+    /**
+     * Restore a file to a specific version
+     */
+    restoreVersion(path: string, versionId: string): Promise<Buffer | null>;
+    /**
+     * Get version history with diffs
+     */
+    getVersionHistory(path: string, limit?: number): Promise<Array<{
+        version: Version;
+        changes?: {
+            additions: number;
+            deletions: number;
+            semanticChange: number;
+        };
+    }>>;
+    /**
+     * Prune old versions beyond the limit
+     */
+    private pruneVersions;
+    /**
+     * Calculate semantic distance between two pieces of content
+     */
+    private calculateSemanticDistance;
+    /**
+     * Generate embedding for content
+     */
+    private generateEmbedding;
+    /**
+     * Hash content for quick comparison
+     */
+    private hashContent;
+    /**
+     * Hash embedding for quick comparison
+     */
+    private hashEmbedding;
+    /**
+     * Estimate semantic change from hashes (rough approximation)
+     */
+    private estimateSemanticChange;
+    /**
+     * Clear version cache for a file
+     */
+    clearCache(path?: string): void;
+}