@sonde/agent 0.2.5 → 0.2.6

package/.turbo/turbo-build.log

@@ -1,4 +1,4 @@
 
-> @sonde/agent@0.2.4 build
+> @sonde/agent@0.2.5 build
 > tsc
 

package/.turbo/turbo-test.log

@@ -1,23 +1,23 @@
 
-> @sonde/agent@0.2.4 test
+> @sonde/agent@0.2.5 test
 > vitest run
 
 
  RUN  v2.1.9 /Users/joshowen/Library/CloudStorage/ProtonDrive-joshowen@protonmail.com-folder/AI/ClaudeCode/sonde/packages/agent
 
- ✓ src/cli/mcp-bridge.test.ts (5 tests) 2ms
- ✓ src/runtime/scrubber.test.ts (11 tests) 4ms
- ✓ src/system/scanner.test.ts (10 tests) 5ms
- ✓ src/runtime/audit.test.ts (5 tests) 4ms
- ✓ src/cli/update.test.ts (9 tests) 3ms
- ✓ src/runtime/privilege.test.ts (4 tests) 80ms
- ✓ src/runtime/attestation.test.ts (8 tests) 2ms
- ✓ src/cli/packs.test.ts (11 tests) 4ms
- ✓ src/runtime/executor.test.ts (7 tests) 3ms
- ✓ src/runtime/connection.test.ts (11 tests) 12ms
+ ✓ src/cli/mcp-bridge.test.ts (5 tests) 3ms
+ ✓ src/runtime/scrubber.test.ts (11 tests) 5ms
+ ✓ src/runtime/audit.test.ts (5 tests) 6ms
+ ✓ src/runtime/privilege.test.ts (4 tests) 29ms
+ ✓ src/system/scanner.test.ts (10 tests) 4ms
+ ✓ src/cli/update.test.ts (9 tests) 5ms
+ ✓ src/runtime/attestation.test.ts (8 tests) 4ms
+ ✓ src/cli/packs.test.ts (17 tests) 6ms
+ ✓ src/runtime/executor.test.ts (7 tests) 7ms
+ ✓ src/runtime/connection.test.ts (11 tests) 23ms
 
  Test Files  10 passed (10)
-      Tests  81 passed (81)
-   Start at  15:54:24
-   Duration  2.37s (transform 1.89s, setup 0ms, collect 6.78s, tests 120ms, environment 1ms, prepare 3.41s)
+      Tests  87 passed (87)
+   Start at  10:01:38
+   Duration  2.99s (transform 2.29s, setup 0ms, collect 8.24s, tests 91ms, environment 1ms, prepare 4.29s)
 

package/CHANGELOG.md

@@ -1,5 +1,15 @@
 # @sonde/agent
 
+## 0.2.6
+
+### Patch Changes
+
+- updates
+
+- Updated dependencies []:
+  - @sonde/shared@0.1.3
+  - @sonde/packs@0.1.3
+
 ## 0.2.5
 
 ### Patch Changes

package/dist/cli/packs.d.ts

@@ -1,5 +1,10 @@
 import type { Pack } from '@sonde/packs';
 import { type PermissionCheck, type ScanResult, type SystemChecker } from '../system/scanner.js';
+/**
+ * Build a pack map filtered by a disabled list.
+ * Used by both the CLI commands and ProbeExecutor creation.
+ */
+export declare function buildEnabledPacks(registry: ReadonlyMap<string, Pack>, disabledPacks: string[]): Map<string, Pack>;
 export interface PackState {
     /** Packs currently loaded/active on this agent */
     installed: Map<string, Pack>;
@@ -11,6 +16,7 @@ export interface PackCommandDeps {
     checker: SystemChecker;
     getUserGroups: () => string[];
     log: (msg: string) => void;
+    persist: (disabledPacks: string[]) => void;
 }
 export declare function cmdPacksList(deps?: PackCommandDeps): void;
 export declare function cmdPacksScan(deps?: PackCommandDeps): ScanResult[];

package/dist/cli/packs.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"packs.d.ts","sourceRoot":"","sources":["../../src/cli/packs.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,IAAI,EAAE,MAAM,cAAc,CAAC;AAGzC,OAAO,EACL,KAAK,eAAe,EACpB,KAAK,UAAU,EACf,KAAK,aAAa,EAInB,MAAM,sBAAsB,CAAC;AAE9B,MAAM,WAAW,SAAS;IACxB,kDAAkD;IAClD,SAAS,EAAE,GAAG,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC;IAC7B,4CAA4C;IAC5C,SAAS,EAAE,WAAW,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC;CACtC;AAED,MAAM,WAAW,eAAe;IAC9B,KAAK,EAAE,SAAS,CAAC;IACjB,OAAO,EAAE,aAAa,CAAC;IACvB,aAAa,EAAE,MAAM,MAAM,EAAE,CAAC;IAC9B,GAAG,EAAE,CAAC,GAAG,EAAE,MAAM,KAAK,IAAI,CAAC;CAC5B;AA4BD,wBAAgB,YAAY,CAAC,IAAI,CAAC,EAAE,eAAe,GAAG,IAAI,CAmBzD;AAED,wBAAgB,YAAY,CAAC,IAAI,CAAC,EAAE,eAAe,GAAG,UAAU,EAAE,CAmCjE;AAED,wBAAgB,eAAe,CAC7B,IAAI,EAAE,MAAM,EACZ,IAAI,CAAC,EAAE,eAAe,GACrB;IAAE,OAAO,EAAE,OAAO,CAAC;IAAC,WAAW,CAAC,EAAE,eAAe,CAAA;CAAE,CA0CrD;AAED,wBAAgB,iBAAiB,CAAC,IAAI,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,eAAe,GAAG,OAAO,CAW/E;AAED,wBAAgB,kBAAkB,CAAC,OAAO,EAAE,MAAM,EAAE,GAAG,IAAI,CA2C1D"}
+{"version":3,"file":"packs.d.ts","sourceRoot":"","sources":["../../src/cli/packs.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,IAAI,EAAE,MAAM,cAAc,CAAC;AAIzC,OAAO,EACL,KAAK,eAAe,EACpB,KAAK,UAAU,EACf,KAAK,aAAa,EAInB,MAAM,sBAAsB,CAAC;AAE9B;;;GAGG;AACH,wBAAgB,iBAAiB,CAC/B,QAAQ,EAAE,WAAW,CAAC,MAAM,EAAE,IAAI,CAAC,EACnC,aAAa,EAAE,MAAM,EAAE,GACtB,GAAG,CAAC,MAAM,EAAE,IAAI,CAAC,CASnB;AAED,MAAM,WAAW,SAAS;IACxB,kDAAkD;IAClD,SAAS,EAAE,GAAG,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC;IAC7B,4CAA4C;IAC5C,SAAS,EAAE,WAAW,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC;CACtC;AAED,MAAM,WAAW,eAAe;IAC9B,KAAK,EAAE,SAAS,CAAC;IACjB,OAAO,EAAE,aAAa,CAAC;IACvB,aAAa,EAAE,MAAM,MAAM,EAAE,CAAC;IAC9B,GAAG,EAAE,CAAC,GAAG,EAAE,MAAM,KAAK,IAAI,CAAC;IAC3B,OAAO,EAAE,CAAC,aAAa,EAAE,MAAM,EAAE,KAAK,IAAI,CAAC;CAC5C;AAsCD,wBAAgB,YAAY,CAAC,IAAI,CAAC,EAAE,eAAe,GAAG,IAAI,CAsBzD;AAED,wBAAgB,YAAY,CAAC,IAAI,CAAC,EAAE,eAAe,GAAG,UAAU,EAAE,CAmCjE;AAED,wBAAgB,eAAe,CAC7B,IAAI,EAAE,MAAM,EACZ,IAAI,CAAC,EAAE,eAAe,GACrB;IAAE,OAAO,EAAE,OAAO,CAAC;IAAC,WAAW,CAAC,EAAE,eAAe,CAAA;CAAE,CAgDrD;AAED,wBAAgB,iBAAiB,CAC/B,IAAI,EAAE,MAAM,EACZ,IAAI,CAAC,EAAE,eAAe,GACrB,OAAO,CAcT;AAED,wBAAgB,kBAAkB,CAAC,OAAO,EAAE,MAAM,EAAE,GAAG,IAAI,CA4C1D"}

package/dist/cli/packs.js

@@ -1,14 +1,39 @@
 import { packRegistry } from '@sonde/packs';
+import { loadConfig, saveConfig } from '../config.js';
 import { checkPackPermissions, createSystemChecker, scanForSoftware, } from '../system/scanner.js';
+/**
+ * Build a pack map filtered by a disabled list.
+ * Used by both the CLI commands and ProbeExecutor creation.
+ */
+export function buildEnabledPacks(registry, disabledPacks) {
+    const disabled = new Set(disabledPacks);
+    const result = new Map();
+    for (const [name, pack] of registry) {
+        if (!disabled.has(name)) {
+            result.set(name, pack);
+        }
+    }
+    return result;
+}
 function createDefaultDeps() {
+    const config = loadConfig();
+    const disabledPacks = config?.disabledPacks ?? [];
     return {
         state: {
-            installed: new Map(packRegistry),
+            installed: buildEnabledPacks(packRegistry, disabledPacks),
             available: packRegistry,
         },
         checker: createSystemChecker(),
         getUserGroups: getProcessUserGroups,
         log: console.log,
+        persist: (disabled) => {
+            const current = loadConfig();
+            if (current) {
+                current.disabledPacks =
+                    disabled.length > 0 ? disabled : undefined;
+                saveConfig(current);
+            }
+        },
     };
 }
 function getProcessUserGroups() {
@@ -31,17 +56,19 @@ export function cmdPacksList(deps) {
         log('No packs installed.');
         return;
     }
+    const bold = (s) => `\x1b[1m${s}\x1b[0m`;
     log('Installed packs:');
     log('');
     for (const [name, pack] of state.installed) {
         const probeCount = pack.manifest.probes.length;
-        log(`  ${name} v${pack.manifest.version} (${probeCount} probes)`);
+        log(`  ${bold(name)} v${pack.manifest.version} (${probeCount} probes)`);
         log(`    ${pack.manifest.description}`);
         for (const probe of pack.manifest.probes) {
             log(`    - ${name}.${probe.name}: ${probe.description}`);
         }
         log('');
     }
+    log(`  Manage: sonde packs install ${bold('<name>')} | uninstall ${bold('<name>')}`);
 }
 export function cmdPacksScan(deps) {
     const { state, checker, log } = deps ?? createDefaultDeps();
@@ -77,7 +104,7 @@ export function cmdPacksScan(deps) {
     return results;
 }
 export function cmdPacksInstall(name, deps) {
-    const { state, checker, getUserGroups, log } = deps ?? createDefaultDeps();
+    const { state, checker, getUserGroups, log, persist } = deps ?? createDefaultDeps();
     const pack = state.available.get(name);
     if (!pack) {
         log(`Error: Pack "${name}" not found.`);
@@ -110,28 +137,35 @@ export function cmdPacksInstall(name, deps) {
         return { success: false, permissions };
     }
     state.installed.set(name, pack);
+    const disabled = [...state.available.keys()]
+        .filter((k) => !state.installed.has(k));
+    persist(disabled);
     log(`Pack "${name}" installed successfully.`);
     log(`  ${pack.manifest.probes.length} probes now available.`);
     return { success: true, permissions };
 }
 export function cmdPacksUninstall(name, deps) {
-    const { state, log } = deps ?? createDefaultDeps();
+    const { state, log, persist } = deps ?? createDefaultDeps();
     if (!state.installed.has(name)) {
         log(`Error: Pack "${name}" is not installed.`);
         return false;
     }
     state.installed.delete(name);
+    const disabled = [...state.available.keys()]
+        .filter((k) => !state.installed.has(k));
+    persist(disabled);
     log(`Pack "${name}" uninstalled.`);
     return true;
 }
 export function handlePacksCommand(subArgs) {
     const subcommand = subArgs[0];
+    const deps = createDefaultDeps();
     switch (subcommand) {
         case 'list':
-            cmdPacksList();
+            cmdPacksList(deps);
             break;
         case 'scan':
-            cmdPacksScan();
+            cmdPacksScan(deps);
             break;
         case 'install': {
             const name = subArgs[1];
@@ -139,7 +173,7 @@ export function handlePacksCommand(subArgs) {
                 console.error('Usage: sonde packs install <name>');
                 process.exit(1);
             }
-            const result = cmdPacksInstall(name);
+            const result = cmdPacksInstall(name, deps);
             if (!result.success)
                 process.exit(1);
             break;
@@ -150,7 +184,7 @@ export function handlePacksCommand(subArgs) {
                 console.error('Usage: sonde packs uninstall <name>');
                 process.exit(1);
             }
-            if (!cmdPacksUninstall(name))
+            if (!cmdPacksUninstall(name, deps))
                 process.exit(1);
             break;
         }

package/dist/cli/packs.js.map

@@ -1 +1 @@
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package/dist/cli/packs.test.js

@@ -1,5 +1,5 @@
 import { describe, expect, it, vi } from 'vitest';
-import { cmdPacksInstall, cmdPacksList, cmdPacksScan, cmdPacksUninstall, } from './packs.js';
+import { buildEnabledPacks, cmdPacksInstall, cmdPacksList, cmdPacksScan, cmdPacksUninstall, } from './packs.js';
 function createMockPack(name, overrides) {
     return {
         manifest: {
@@ -39,6 +39,7 @@ function createDeps(overrides = {}) {
         checker: createMockChecker(),
         getUserGroups: () => [],
         log: vi.fn(),
+        persist: vi.fn(),
         ...overrides,
     };
 }
@@ -167,5 +168,59 @@ describe('cmdPacksUninstall', () => {
         const log = deps.log;
         expect(log).toHaveBeenCalledWith('Error: Pack "docker" is not installed.');
     });
+    it('persists disabled packs on uninstall', () => {
+        const deps = createDeps();
+        cmdPacksUninstall('system', deps);
+        const persist = deps.persist;
+        expect(persist).toHaveBeenCalledTimes(1);
+        const firstCall = persist.mock.calls[0];
+        const disabled = firstCall[0];
+        expect(disabled).toContain('system');
+        expect(disabled).toContain('docker');
+    });
+});
+describe('cmdPacksInstall persistence', () => {
+    it('persists disabled packs on install', () => {
+        const deps = createDeps();
+        cmdPacksInstall('docker', deps);
+        const persist = deps.persist;
+        expect(persist).toHaveBeenCalledTimes(1);
+        const firstCall = persist.mock.calls[0];
+        const disabled = firstCall[0];
+        expect(disabled).not.toContain('docker');
+        expect(disabled).not.toContain('system');
+    });
+    it('does not persist when install fails', () => {
+        const deps = createDeps();
+        cmdPacksInstall('nonexistent', deps);
+        const persist = deps.persist;
+        expect(persist).not.toHaveBeenCalled();
+    });
+});
+describe('buildEnabledPacks', () => {
+    it('returns all packs when none disabled', () => {
+        const registry = new Map([
+            ['system', createMockPack('system')],
+            ['docker', createMockPack('docker')],
+        ]);
+        const result = buildEnabledPacks(registry, []);
+        expect([...result.keys()]).toEqual(['system', 'docker']);
+    });
+    it('filters out disabled packs', () => {
+        const registry = new Map([
+            ['system', createMockPack('system')],
+            ['docker', createMockPack('docker')],
+            ['nginx', createMockPack('nginx')],
+        ]);
+        const result = buildEnabledPacks(registry, ['docker', 'nginx']);
+        expect([...result.keys()]).toEqual(['system']);
+    });
+    it('ignores disabled names not in registry', () => {
+        const registry = new Map([
+            ['system', createMockPack('system')],
+        ]);
+        const result = buildEnabledPacks(registry, ['nonexistent']);
+        expect([...result.keys()]).toEqual(['system']);
+    });
 });
 //# sourceMappingURL=packs.test.js.map

package/dist/cli/packs.test.js.map

@@ -1 +1 @@
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package/dist/config.d.ts

@@ -9,6 +9,7 @@ export interface AgentConfig {
     caCertPath?: string;
     scrubPatterns?: string[];
     allowUnsignedPacks?: boolean;
+    disabledPacks?: string[];
 }
 export declare function getConfigPath(): string;
 export declare function loadConfig(): AgentConfig | undefined;
@@ -16,4 +17,16 @@ export declare function saveConfig(config: AgentConfig): void;
 export declare function getConfigDir(): string;
 /** Save cert/key/ca PEM files to ~/.sonde/ and update config paths. */
 export declare function saveCerts(config: AgentConfig, certPem: string, keyPem: string, caCertPem: string): void;
+export declare function writePidFile(pid: number): void;
+/**
+ * Read PID file and verify the process is still alive.
+ * Returns undefined if file missing or process is dead.
+ */
+export declare function readPidFile(): number | undefined;
+export declare function removePidFile(): void;
+/**
+ * Stop a running background agent if one exists.
+ * Returns true if an agent was stopped.
+ */
+export declare function stopRunningAgent(): boolean;
 //# sourceMappingURL=config.d.ts.map

package/dist/config.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"config.d.ts","sourceRoot":"","sources":["../src/config.ts"],"names":[],"mappings":"AAIA,MAAM,WAAW,WAAW;IAC1B,MAAM,EAAE,MAAM,CAAC;IACf,MAAM,EAAE,MAAM,CAAC;IACf,SAAS,EAAE,MAAM,CAAC;IAClB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,aAAa,CAAC,EAAE,MAAM,EAAE,CAAC;IACzB,kBAAkB,CAAC,EAAE,OAAO,CAAC;CAC9B;AAKD,wBAAgB,aAAa,IAAI,MAAM,CAEtC;AAED,wBAAgB,UAAU,IAAI,WAAW,GAAG,SAAS,CAoBpD;AAED,wBAAgB,UAAU,CAAC,MAAM,EAAE,WAAW,GAAG,IAAI,CAGpD;AAED,wBAAgB,YAAY,IAAI,MAAM,CAErC;AAED,uEAAuE;AACvE,wBAAgB,SAAS,CACvB,MAAM,EAAE,WAAW,EACnB,OAAO,EAAE,MAAM,EACf,MAAM,EAAE,MAAM,EACd,SAAS,EAAE,MAAM,GAChB,IAAI,CAcN"}
+{"version":3,"file":"config.d.ts","sourceRoot":"","sources":["../src/config.ts"],"names":[],"mappings":"AAIA,MAAM,WAAW,WAAW;IAC1B,MAAM,EAAE,MAAM,CAAC;IACf,MAAM,EAAE,MAAM,CAAC;IACf,SAAS,EAAE,MAAM,CAAC;IAClB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,aAAa,CAAC,EAAE,MAAM,EAAE,CAAC;IACzB,kBAAkB,CAAC,EAAE,OAAO,CAAC;IAC7B,aAAa,CAAC,EAAE,MAAM,EAAE,CAAC;CAC1B;AAMD,wBAAgB,aAAa,IAAI,MAAM,CAEtC;AAED,wBAAgB,UAAU,IAAI,WAAW,GAAG,SAAS,CAoBpD;AAED,wBAAgB,UAAU,CAAC,MAAM,EAAE,WAAW,GAAG,IAAI,CAGpD;AAED,wBAAgB,YAAY,IAAI,MAAM,CAErC;AAED,uEAAuE;AACvE,wBAAgB,SAAS,CACvB,MAAM,EAAE,WAAW,EACnB,OAAO,EAAE,MAAM,EACf,MAAM,EAAE,MAAM,EACd,SAAS,EAAE,MAAM,GAChB,IAAI,CAcN;AAED,wBAAgB,YAAY,CAAC,GAAG,EAAE,MAAM,GAAG,IAAI,CAG9C;AAED;;;GAGG;AACH,wBAAgB,WAAW,IAAI,MAAM,GAAG,SAAS,CAmBhD;AAED,wBAAgB,aAAa,IAAI,IAAI,CAMpC;AAED;;;GAGG;AACH,wBAAgB,gBAAgB,IAAI,OAAO,CAW1C"}

package/dist/config.js

@@ -3,6 +3,7 @@ import os from 'node:os';
 import path from 'node:path';
 const CONFIG_DIR = path.join(os.homedir(), '.sonde');
 const CONFIG_FILE = path.join(CONFIG_DIR, 'config.json');
+const PID_FILE = path.join(CONFIG_DIR, 'agent.pid');
 export function getConfigPath() {
     return CONFIG_FILE;
 }
@@ -49,4 +50,58 @@ export function saveCerts(config, certPem, keyPem, caCertPem) {
     config.keyPath = keyPath;
     config.caCertPath = caCertPath;
 }
+export function writePidFile(pid) {
+    fs.mkdirSync(CONFIG_DIR, { recursive: true });
+    fs.writeFileSync(PID_FILE, String(pid), 'utf-8');
+}
+/**
+ * Read PID file and verify the process is still alive.
+ * Returns undefined if file missing or process is dead.
+ */
+export function readPidFile() {
+    let raw;
+    try {
+        raw = fs.readFileSync(PID_FILE, 'utf-8').trim();
+    }
+    catch {
+        return undefined;
+    }
+    const pid = Number.parseInt(raw, 10);
+    if (Number.isNaN(pid))
+        return undefined;
+    try {
+        process.kill(pid, 0);
+        return pid;
+    }
+    catch {
+        // Process is dead — clean up stale PID file
+        removePidFile();
+        return undefined;
+    }
+}
+export function removePidFile() {
+    try {
+        fs.unlinkSync(PID_FILE);
+    }
+    catch {
+        // Ignore if already removed
+    }
+}
+/**
+ * Stop a running background agent if one exists.
+ * Returns true if an agent was stopped.
+ */
+export function stopRunningAgent() {
+    const pid = readPidFile();
+    if (pid === undefined)
+        return false;
+    try {
+        process.kill(pid, 'SIGTERM');
+    }
+    catch {
+        // Process already gone
+    }
+    removePidFile();
+    return true;
+}
 //# sourceMappingURL=config.js.map

package/dist/config.js.map

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package/dist/index.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";AAOA,OAAO,EACL,KAAK,WAAW,EAOjB,MAAM,aAAa,CAAC;AACrB,OAAO,EAAE,eAAe,EAAE,KAAK,gBAAgB,EAAiB,MAAM,yBAAyB,CAAC;AAChG,OAAO,EAAE,aAAa,EAAE,MAAM,uBAAuB,CAAC;AA4CtD,UAAU,OAAO;IACf,MAAM,EAAE,WAAW,CAAC;IACpB,QAAQ,EAAE,aAAa,CAAC;IACxB,UAAU,EAAE,eAAe,CAAC;CAC7B;AAED,iBAAS,aAAa,CAAC,MAAM,EAAE,gBAAgB,GAAG,OAAO,CAgBxD;AAwSD,OAAO,EAAE,aAAa,EAAE,CAAC;AACzB,YAAY,EAAE,OAAO,EAAE,CAAC"}

package/dist/index.js

@@ -1,12 +1,15 @@
 #!/usr/bin/env node
+import { spawn } from 'node:child_process';
 import os from 'node:os';
-import { handlePacksCommand } from './cli/packs.js';
+import { packRegistry } from '@sonde/packs';
+import { buildEnabledPacks, handlePacksCommand } from './cli/packs.js';
 import { checkForUpdate, performUpdate } from './cli/update.js';
-import { getConfigPath, loadConfig, saveConfig } from './config.js';
+import { getConfigPath, loadConfig, removePidFile, saveConfig, stopRunningAgent, writePidFile, } from './config.js';
 import { AgentConnection, enrollWithHub } from './runtime/connection.js';
 import { ProbeExecutor } from './runtime/executor.js';
 import { checkNotRoot } from './runtime/privilege.js';
 import { buildPatterns } from './runtime/scrubber.js';
+import { createSystemChecker, scanForSoftware } from './system/scanner.js';
 import { VERSION } from './version.js';
 const args = process.argv.slice(2);
 const command = args[0];
@@ -21,6 +24,8 @@ function printUsage() {
     console.log('  install   Interactive guided setup (enroll + scan + packs)');
     console.log('  enroll    Enroll this agent with a hub');
     console.log('  start     Start the agent (TUI by default, --headless for daemon)');
+    console.log('  stop      Stop the background agent');
+    console.log('  restart   Restart the agent in background');
     console.log('  status    Show agent status');
     console.log('  packs     Manage packs (list, scan, install, uninstall)');
     console.log('  update    Check for and install agent updates');
@@ -48,7 +53,8 @@ function createRuntime(events) {
         console.error('Error: Agent not enrolled. Run "sonde enroll" first.');
         process.exit(1);
     }
-    const executor = new ProbeExecutor(undefined, undefined, buildPatterns(config.scrubPatterns));
+    const enabledPacks = buildEnabledPacks(packRegistry, config.disabledPacks ?? []);
+    const executor = new ProbeExecutor(enabledPacks, undefined, buildPatterns(config.scrubPatterns));
     const connection = new AgentConnection(config, executor, events);
     return { config, executor, connection };
 }
@@ -96,6 +102,18 @@ async function cmdEnroll() {
     // Clear the one-time token after use
     config.enrollmentToken = undefined;
     saveConfig(config);
+    // Auto-detect packs
+    const manifests = [...packRegistry.values()].map((p) => p.manifest);
+    const checker = createSystemChecker();
+    const scanResults = scanForSoftware(manifests, checker);
+    const detectedNames = scanResults
+        .filter((r) => r.detected)
+        .map((r) => r.packName);
+    const allNames = manifests.map((m) => m.name);
+    const enabledNames = ['system', ...detectedNames.filter((n) => n !== 'system')];
+    const disabledNames = allNames.filter((n) => !enabledNames.includes(n));
+    config.disabledPacks = disabledNames;
+    saveConfig(config);
     console.log('Agent enrolled successfully.');
     console.log(`  Hub:      ${hubUrl}`);
     console.log(`  Name:     ${agentName}`);
@@ -105,6 +123,14 @@ async function cmdEnroll() {
         console.log('  mTLS:     Client certificate issued and saved');
     }
     console.log('');
+    console.log('Pack detection:');
+    for (const name of enabledNames) {
+        console.log(`  ✓ ${name}`);
+    }
+    for (const name of disabledNames) {
+        console.log(`  ✗ ${name} (not detected)`);
+    }
+    console.log('');
     console.log('Run "sonde start" to connect.');
 }
 function cmdStart() {
@@ -131,21 +157,56 @@ function cmdStart() {
     console.log(`  Hub:  ${config.hubUrl}`);
     console.log('');
     connection.start();
+    writePidFile(process.pid);
     process.stdin.unref();
     const shutdown = () => {
         console.log('\nShutting down...');
         connection.stop();
+        removePidFile();
         process.exit(0);
     };
     process.on('SIGINT', shutdown);
     process.on('SIGTERM', shutdown);
 }
+function spawnBackgroundAgent() {
+    const child = spawn(process.execPath, [process.argv[1], 'start', '--headless'], {
+        detached: true,
+        stdio: 'ignore',
+    });
+    child.unref();
+    return child.pid;
+}
 async function cmdManager() {
+    stopRunningAgent();
+    let detached = false;
     const { render } = await import('ink');
     const { createElement } = await import('react');
     const { ManagerApp } = await import('./tui/manager/ManagerApp.js');
-    const { waitUntilExit } = render(createElement(ManagerApp, { createRuntime }));
+    const onDetach = () => {
+        detached = true;
+        spawnBackgroundAgent();
+    };
+    const { waitUntilExit } = render(createElement(ManagerApp, { createRuntime, onDetach }));
     await waitUntilExit();
+    if (detached) {
+        console.log('Agent detached to background.');
+        console.log('  sonde stop     — stop the background agent');
+        console.log('  sonde start    — reattach the TUI');
+        console.log('  sonde restart  — restart in background');
+    }
+}
+function cmdStop() {
+    if (stopRunningAgent()) {
+        console.log('Agent stopped.');
+    }
+    else {
+        console.log('No running agent found.');
+    }
+}
+function cmdRestart() {
+    stopRunningAgent();
+    const pid = spawnBackgroundAgent();
+    console.log(`Agent restarted in background (PID: ${pid}).`);
 }
 function cmdStatus() {
     const config = loadConfig();
@@ -154,7 +215,7 @@ function cmdStatus() {
         console.log(`Run "sonde enroll" to get started.`);
         return;
     }
-    console.log('Sonde Agent Status');
+    console.log(`Sonde Agent v${VERSION}`);
     console.log(`  Name:     ${config.agentName}`);
     console.log(`  Hub:      ${config.hubUrl}`);
     console.log(`  Agent ID: ${config.agentId ?? '(not yet assigned)'}`);
@@ -213,6 +274,12 @@ switch (command) {
             });
         }
         break;
+    case 'stop':
+        cmdStop();
+        break;
+    case 'restart':
+        cmdRestart();
+        break;
     case 'status':
         cmdStatus();
         break;