@soleri/core 9.5.0 → 9.6.0

package/dist/vault/linking.js

@@ -118,45 +118,54 @@ export class LinkManager {
     /**
      * Walk the link graph from a starting entry up to `depth` hops.
      * BFS — walks both outgoing and incoming links (undirected).
+     * Batch-loads all links per frontier level to avoid N+1 queries.
      */
     traverse(entryId, depth = 2) {
         const visited = new Set([entryId]);
         const result = [];
         let frontier = [entryId];
         for (let d = 0; d < depth && frontier.length > 0; d++) {
+            // Batch-load all links for entire frontier in one query
+            const allLinks = this.getAllLinksForEntries(frontier);
+            // Collect unvisited neighbor IDs
+            const neighborMap = new Map();
+            for (const link of allLinks) {
+                // Outgoing: source is in frontier, target is the neighbor
+                if (frontier.includes(link.sourceId) && !visited.has(link.targetId)) {
+                    if (!neighborMap.has(link.targetId)) {
+                        neighborMap.set(link.targetId, { link, direction: 'outgoing' });
+                    }
+                }
+                // Incoming: target is in frontier, source is the neighbor
+                if (frontier.includes(link.targetId) && !visited.has(link.sourceId)) {
+                    if (!neighborMap.has(link.sourceId)) {
+                        neighborMap.set(link.sourceId, { link, direction: 'incoming' });
+                    }
+                }
+            }
+            if (neighborMap.size === 0)
+                break;
+            // Batch-load entry metadata for all neighbors in one query
+            const neighborIds = [...neighborMap.keys()];
+            const metaMap = this.getEntryMetaBatch(neighborIds);
             const nextFrontier = [];
-            for (const currentId of frontier) {
-                this.collectNeighbors(currentId, visited, nextFrontier, result);
+            for (const [neighborId, { link, direction }] of neighborMap) {
+                visited.add(neighborId);
+                nextFrontier.push(neighborId);
+                const entry = metaMap.get(neighborId);
+                if (!entry)
+                    continue;
+                result.push({
+                    ...entry,
+                    linkType: link.linkType,
+                    linkDirection: direction,
+                    linkNote: link.note,
+                });
             }
             frontier = nextFrontier;
         }
         return result;
     }
-    /** Collect unvisited outgoing and incoming neighbors for BFS. */
-    collectNeighbors(currentId, visited, nextFrontier, result) {
-        for (const link of this.getLinks(currentId)) {
-            this.visitNeighbor(link.targetId, link, 'outgoing', visited, nextFrontier, result);
-        }
-        for (const link of this.getBacklinks(currentId)) {
-            this.visitNeighbor(link.sourceId, link, 'incoming', visited, nextFrontier, result);
-        }
-    }
-    /** Visit a single neighbor node if not already visited. */
-    visitNeighbor(neighborId, link, direction, visited, nextFrontier, result) {
-        if (visited.has(neighborId))
-            return;
-        visited.add(neighborId);
-        nextFrontier.push(neighborId);
-        const entry = this.getEntryMeta(neighborId);
-        if (!entry)
-            return;
-        result.push({
-            ...entry,
-            linkType: link.linkType,
-            linkDirection: direction,
-            linkNote: link.note,
-        });
-    }
     // ── Bulk Queries ────────────────────────────────────────────────────
     /** Get all links where either source or target is in the given ID set. */
     getAllLinksForEntries(entryIds) {
@@ -231,18 +240,39 @@ export class LinkManager {
         const dryRun = opts?.dryRun ?? false;
         const batchSize = opts?.batchSize ?? 50;
         const start = Date.now();
-        const orphans = this.getOrphans(10000);
         let processed = 0;
         let linksCreated = 0;
         const preview = [];
-        for (let i = 0; i < orphans.length; i += batchSize) {
-            const batch = orphans.slice(i, i + batchSize);
-            for (const entry of batch) {
+        // Estimate total for progress reporting (single COUNT query)
+        let totalEstimate = 0;
+        try {
+            const countRow = this.provider.get(`SELECT COUNT(*) as count FROM entries
+         WHERE id NOT IN (SELECT source_id FROM vault_links)
+           AND id NOT IN (SELECT target_id FROM vault_links)`);
+            totalEstimate = countRow?.count ?? 0;
+        }
+        catch {
+            // fall through with 0
+        }
+        // Process orphans in batches of batchSize instead of loading all at once.
+        // After each batch, successfully linked entries are no longer orphans,
+        // so the next getOrphans() call returns the next set.
+        // For dry-run mode, we must track processed IDs to avoid re-fetching the same orphans.
+        const processedIds = new Set();
+        // eslint-disable-next-line no-constant-condition
+        while (true) {
+            const batch = this.getOrphans(batchSize);
+            // Filter out already-processed entries (relevant for dry-run where orphan status doesn't change)
+            const unprocessed = batch.filter((e) => !processedIds.has(e.id));
+            if (unprocessed.length === 0)
+                break;
+            for (const entry of unprocessed) {
+                processedIds.add(entry.id);
                 const created = this.processOrphan(entry.id, threshold, maxLinks, dryRun, preview);
                 linksCreated += created;
                 processed++;
             }
-            opts?.onProgress?.({ processed, total: orphans.length, linksCreated });
+            opts?.onProgress?.({ processed, total: totalEstimate, linksCreated });
         }
         return {
             processed,
@@ -280,6 +310,23 @@ export class LinkManager {
             return null;
         }
     }
+    /** Batch-load entry metadata for multiple IDs in a single query. */
+    getEntryMetaBatch(entryIds) {
+        const result = new Map();
+        if (entryIds.length === 0)
+            return result;
+        try {
+            const placeholders = entryIds.map(() => '?').join(',');
+            const rows = this.provider.all(`SELECT id, title, type, domain FROM entries WHERE id IN (${placeholders})`, entryIds);
+            for (const row of rows) {
+                result.set(row.id, row);
+            }
+        }
+        catch {
+            // graceful degradation
+        }
+        return result;
+    }
 }
 // ── Free-standing helpers ─────────────────────────────────────────────
 function rowToVaultLink(row) {

package/dist/vault/linking.js.map

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package/dist/vault/vault-maintenance.d.ts.map

@@ -1 +1 @@
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package/dist/vault/vault-maintenance.js

@@ -80,20 +80,13 @@ export function archive(provider, options) {
     const cutoff = Math.floor(Date.now() / 1000) - options.olderThanDays * 86400;
     const reason = options.reason ?? `Archived: older than ${options.olderThanDays} days`;
     return provider.transaction(() => {
-        const candidates = provider.all('SELECT id FROM entries WHERE updated_at < ?', [
-            cutoff,
-        ]);
-        if (candidates.length === 0)
-            return { archived: 0 };
-        let archived = 0;
-        for (const { id } of candidates) {
-            provider.run(`INSERT OR IGNORE INTO entries_archive (id, type, domain, title, severity, description, context, example, counter_example, why, tags, applies_to, created_at, updated_at, valid_from, valid_until, archive_reason)
-         SELECT id, type, domain, title, severity, description, context, example, counter_example, why, tags, applies_to, created_at, updated_at, valid_from, valid_until, ?
-         FROM entries WHERE id = ?`, [reason, id]);
-            const result = provider.run('DELETE FROM entries WHERE id = ?', [id]);
-            archived += result.changes;
-        }
-        return { archived };
+        // Bulk INSERT INTO ... SELECT — copies all matching entries to archive in one query
+        provider.run(`INSERT OR IGNORE INTO entries_archive (id, type, domain, title, severity, description, context, example, counter_example, why, tags, applies_to, created_at, updated_at, valid_from, valid_until, archive_reason)
+       SELECT id, type, domain, title, severity, description, context, example, counter_example, why, tags, applies_to, created_at, updated_at, valid_from, valid_until, ?
+       FROM entries WHERE updated_at < ?`, [reason, cutoff]);
+        // Bulk DELETE — removes all archived entries in one query
+        const result = provider.run('DELETE FROM entries WHERE updated_at < ?', [cutoff]);
+        return { archived: result.changes };
     });
 }
 export function restore(provider, id) {

package/dist/vault/vault-maintenance.js.map

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package/dist/vault/vault-memories.d.ts.map

@@ -1 +1 @@
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package/dist/vault/vault-memories.js

@@ -209,15 +209,25 @@ export function memoryTopics(provider) {
         .sort((a, b) => b.count - a.count);
 }
 export function memoriesByProject(provider) {
-    const rows = provider.all('SELECT project_path as project, COUNT(*) as count FROM memories WHERE archived_at IS NULL GROUP BY project_path ORDER BY count DESC');
-    return rows.map((row) => {
-        const mems = provider.all('SELECT * FROM memories WHERE project_path = ? AND archived_at IS NULL ORDER BY created_at DESC', [row.project]);
-        return {
-            project: row.project,
-            count: row.count,
-            memories: mems.map(rowToMemory),
-        };
-    });
+    // Single query fetching all non-archived memories, grouped client-side by project
+    const allRows = provider.all('SELECT * FROM memories WHERE archived_at IS NULL ORDER BY project_path, created_at DESC');
+    const projectMap = new Map();
+    for (const row of allRows) {
+        const memory = rowToMemory(row);
+        const project = memory.projectPath;
+        if (!projectMap.has(project)) {
+            projectMap.set(project, []);
+        }
+        projectMap.get(project).push(memory);
+    }
+    // Sort by count descending (matching original behavior)
+    return [...projectMap.entries()]
+        .map(([project, memories]) => ({
+        project,
+        count: memories.length,
+        memories,
+    }))
+        .sort((a, b) => b.count - a.count);
 }
 // ── Helper ──────────────────────────────────────────────────────────────
 export function rowToMemory(row) {

package/dist/vault/vault-memories.js.map

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package/dist/vault/vault-schema.d.ts

@@ -6,4 +6,5 @@ import type { PersistenceProvider } from '../persistence/types.js';
 export declare const VAULT_FORMAT_VERSION = 1;
 export declare function checkFormatVersion(provider: PersistenceProvider): void;
 export declare function initializeSchema(provider: PersistenceProvider): void;
+export declare function migratePerformanceIndexes(provider: PersistenceProvider): void;
 //# sourceMappingURL=vault-schema.d.ts.map

package/dist/vault/vault-schema.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"vault-schema.d.ts","sourceRoot":"","sources":["../../src/vault/vault-schema.ts"],"names":[],"mappings":"AAAA;;;GAGG;AACH,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,yBAAyB,CAAC;AAGnE,eAAO,MAAM,oBAAoB,IAAI,CAAC;AAEtC,wBAAgB,kBAAkB,CAAC,QAAQ,EAAE,mBAAmB,GAAG,IAAI,CAWtE;AAED,wBAAgB,gBAAgB,CAAC,QAAQ,EAAE,mBAAmB,GAAG,IAAI,CAOpE"}
+{"version":3,"file":"vault-schema.d.ts","sourceRoot":"","sources":["../../src/vault/vault-schema.ts"],"names":[],"mappings":"AAAA;;;GAGG;AACH,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,yBAAyB,CAAC;AAGnE,eAAO,MAAM,oBAAoB,IAAI,CAAC;AAEtC,wBAAgB,kBAAkB,CAAC,QAAQ,EAAE,mBAAmB,GAAG,IAAI,CAWtE;AAED,wBAAgB,gBAAgB,CAAC,QAAQ,EAAE,mBAAmB,GAAG,IAAI,CAQpE;AAkND,wBAAgB,yBAAyB,CAAC,QAAQ,EAAE,mBAAmB,GAAG,IAAI,CAkB7E"}

package/dist/vault/vault-schema.js

@@ -18,6 +18,7 @@ export function initializeSchema(provider) {
     migrateOriginColumn(provider);
     migrateContentHash(provider);
     migrateTierColumn(provider);
+    migratePerformanceIndexes(provider);
 }
 function createCoreTables(provider) {
     provider.execSql(`
@@ -202,4 +203,23 @@ function migrateTierColumn(provider) {
     }
     provider.execSql('CREATE INDEX IF NOT EXISTS idx_entries_tier ON entries(tier) WHERE tier IS NOT NULL');
 }
+export function migratePerformanceIndexes(provider) {
+    provider.execSql(`
+    CREATE INDEX IF NOT EXISTS idx_memories_archived_at ON memories(archived_at);
+    CREATE INDEX IF NOT EXISTS idx_entries_updated_at ON entries(updated_at);
+    CREATE INDEX IF NOT EXISTS idx_brain_feedback_entry_id ON brain_feedback(entry_id);
+    CREATE INDEX IF NOT EXISTS idx_entries_valid_until ON entries(valid_until) WHERE valid_until IS NOT NULL;
+    CREATE INDEX IF NOT EXISTS idx_entries_valid_from ON entries(valid_from) WHERE valid_from IS NOT NULL;
+  `);
+    // brain_sessions may not exist yet if intelligence module hasn't initialized
+    try {
+        provider.execSql(`
+      CREATE INDEX IF NOT EXISTS idx_brain_sessions_plan_id ON brain_sessions(plan_id) WHERE plan_id IS NOT NULL;
+      CREATE INDEX IF NOT EXISTS idx_brain_sessions_started_at ON brain_sessions(started_at);
+    `);
+    }
+    catch {
+        /* brain_sessions table doesn't exist yet — indexes will be created on next init */
+    }
+}
 //# sourceMappingURL=vault-schema.js.map

package/dist/vault/vault-schema.js.map

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package/dist/vault/vault.d.ts.map

@@ -1 +1 @@
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package/dist/vault/vault.js

@@ -3,6 +3,12 @@ import { initializeSchema, checkFormatVersion, VAULT_FORMAT_VERSION } from './va
 import * as entries from './vault-entries.js';
 import * as memories from './vault-memories.js';
 import * as maintenance from './vault-maintenance.js';
+/** Apply critical PRAGMAs that every vault database must have. */
+function applyVaultPragmas(provider) {
+    provider.run('PRAGMA journal_mode = WAL');
+    provider.run('PRAGMA foreign_keys = ON');
+    provider.run('PRAGMA synchronous = NORMAL');
+}
 export class Vault {
     provider;
     sqliteProvider;
@@ -14,15 +20,13 @@ export class Vault {
             const sqlite = new SQLitePersistenceProvider(providerOrPath);
             this.provider = sqlite;
             this.sqliteProvider = sqlite;
-            this.provider.run('PRAGMA journal_mode = WAL');
-            this.provider.run('PRAGMA foreign_keys = ON');
-            this.provider.run('PRAGMA synchronous = NORMAL');
         }
         else {
             this.provider = providerOrPath;
             this.sqliteProvider =
                 providerOrPath instanceof SQLitePersistenceProvider ? providerOrPath : null;
         }
+        applyVaultPragmas(this.provider);
         initializeSchema(this.provider);
         checkFormatVersion(this.provider);
     }

package/dist/vault/vault.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@soleri/core",
-  "version": "9.5.0",
+  "version": "9.6.0",
   "description": "Shared engine for Soleri agents — vault, brain, planner, LLM utilities, and facade infrastructure.",
   "keywords": [
     "agent",
@@ -35,6 +35,10 @@
     "./module-manifest": {
       "types": "./dist/engine/module-manifest.d.ts",
       "import": "./dist/engine/module-manifest.js"
+    },
+    "./personas": {
+      "types": "./dist/persona/defaults.d.ts",
+      "import": "./dist/persona/defaults.js"
     }
   },
   "publishConfig": {
@@ -48,10 +52,12 @@
     "test:coverage": "vitest run --coverage"
   },
   "dependencies": {
-    "better-sqlite3": "^11.8.1",
     "yaml": "^2.7.0",
     "zod": "^3.24.2"
   },
+  "optionalDependencies": {
+    "better-sqlite3": "^11.8.1"
+  },
   "devDependencies": {
     "@types/better-sqlite3": "^7.6.13",
     "@types/pdf-parse": "^1.1.5",