@soleri/core 2.0.1 → 2.0.2

package/dist/brain/brain.d.ts

@@ -1,9 +1,7 @@
 import type { Vault } from '../vault/vault.js';
 import type { IntelligenceEntry } from '../intelligence/types.js';
-import type { CogneeClient } from '../cognee/client.js';
 export interface ScoringWeights {
     semantic: number;
-    vector: number;
     severity: number;
     recency: number;
     tagOverlap: number;
@@ -11,7 +9,6 @@ export interface ScoringWeights {
 }
 export interface ScoreBreakdown {
     semantic: number;
-    vector: number;
     severity: number;
     recency: number;
     tagOverlap: number;
@@ -52,11 +49,10 @@ export interface QueryContext {
 }
 export declare class Brain {
     private vault;
-    private cognee;
     private vocabulary;
     private weights;
-    constructor(vault: Vault, cognee?: CogneeClient);
-    intelligentSearch(query: string, options?: SearchOptions): Promise<RankedResult[]>;
+    constructor(vault: Vault);
+    intelligentSearch(query: string, options?: SearchOptions): RankedResult[];
     enrichAndCapture(entry: Partial<IntelligenceEntry> & {
         id: string;
         type: IntelligenceEntry['type'];
@@ -66,11 +62,7 @@ export declare class Brain {
         description: string;
     }): CaptureResult;
     recordFeedback(query: string, entryId: string, action: 'accepted' | 'dismissed'): void;
-    getRelevantPatterns(context: QueryContext): Promise<RankedResult[]>;
-    syncToCognee(): Promise<{
-        synced: number;
-        cognified: boolean;
-    }>;
+    getRelevantPatterns(context: QueryContext): RankedResult[];
     rebuildVocabulary(): void;
     getStats(): BrainStats;
     getVocabularySize(): number;
@@ -79,7 +71,6 @@ export declare class Brain {
     private detectDuplicate;
     private updateVocabularyIncremental;
     private persistVocabulary;
-    private getCogneeWeights;
     private recomputeWeights;
 }
 //# sourceMappingURL=brain.d.ts.map

package/dist/brain/brain.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"brain.d.ts","sourceRoot":"","sources":["../../src/brain/brain.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,mBAAmB,CAAC;AAE/C,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,0BAA0B,CAAC;AAWlE,MAAM,WAAW,cAAc;IAC7B,QAAQ,EAAE,MAAM,CAAC;IACjB,QAAQ,EAAE,MAAM,CAAC;IACjB,OAAO,EAAE,MAAM,CAAC;IAChB,UAAU,EAAE,MAAM,CAAC;IACnB,WAAW,EAAE,MAAM,CAAC;CACrB;AAED,MAAM,WAAW,cAAc;IAC7B,QAAQ,EAAE,MAAM,CAAC;IACjB,QAAQ,EAAE,MAAM,CAAC;IACjB,OAAO,EAAE,MAAM,CAAC;IAChB,UAAU,EAAE,MAAM,CAAC;IACnB,WAAW,EAAE,MAAM,CAAC;IACpB,KAAK,EAAE,MAAM,CAAC;CACf;AAED,MAAM,WAAW,YAAY;IAC3B,KAAK,EAAE,iBAAiB,CAAC;IACzB,KAAK,EAAE,MAAM,CAAC;IACd,SAAS,EAAE,cAAc,CAAC;CAC3B;AAED,MAAM,WAAW,aAAa;IAC5B,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,IAAI,CAAC,EAAE,MAAM,EAAE,CAAC;CACjB;AAED,MAAM,WAAW,aAAa;IAC5B,QAAQ,EAAE,OAAO,CAAC;IAClB,EAAE,EAAE,MAAM,CAAC;IACX,QAAQ,EAAE,MAAM,EAAE,CAAC;IACnB,SAAS,CAAC,EAAE;QAAE,EAAE,EAAE,MAAM,CAAC;QAAC,UAAU,EAAE,MAAM,CAAA;KAAE,CAAC;IAC/C,OAAO,CAAC,EAAE,OAAO,CAAC;CACnB;AAED,MAAM,WAAW,UAAU;IACzB,cAAc,EAAE,MAAM,CAAC;IACvB,aAAa,EAAE,MAAM,CAAC;IACtB,OAAO,EAAE,cAAc,CAAC;CACzB;AAED,MAAM,WAAW,YAAY;IAC3B,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,IAAI,CAAC,EAAE,MAAM,EAAE,CAAC;CACjB;AA0BD,qBAAa,KAAK;IAChB,OAAO,CAAC,KAAK,CAAQ;IACrB,OAAO,CAAC,UAAU,CAAkC;IACpD,OAAO,CAAC,OAAO,CAA0C;gBAE7C,KAAK,EAAE,KAAK;IAMxB,iBAAiB,CAAC,KAAK,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,aAAa,GAAG,YAAY,EAAE;IA0BzE,gBAAgB,CACd,KAAK,EAAE,OAAO,CAAC,iBAAiB,CAAC,GAAG;QAClC,EAAE,EAAE,MAAM,CAAC;QACX,IAAI,EAAE,iBAAiB,CAAC,MAAM,CAAC,CAAC;QAChC,MAAM,EAAE,MAAM,CAAC;QACf,KAAK,EAAE,MAAM,CAAC;QACd,QAAQ,EAAE,iBAAiB,CAAC,UAAU,CAAC,CAAC;QACxC,WAAW,EAAE,MAAM,CAAC;KACrB,GACA,aAAa;IA+ChB,cAAc,CAAC,KAAK,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,UAAU,GAAG,WAAW,GAAG,IAAI;IAUtF,mBAAmB,CAAC,OAAO,EAAE,YAAY,GAAG,YAAY,EAAE;IAO1D,iBAAiB,IAAI,IAAI;IA6BzB,QAAQ,IAAI,UAAU;IAYtB,iBAAiB,IAAI,MAAM;IAM3B,OAAO,CAAC,UAAU;IAyClB,OAAO,CAAC,YAAY;IAgBpB,OAAO,CAAC,eAAe;IA0CvB,OAAO,CAAC,2BAA2B;IAkBnC,OAAO,CAAC,iBAAiB;IAezB,OAAO,CAAC,gBAAgB;CAwCzB"}

package/dist/brain/brain.js

@@ -1,161 +1,4 @@
-// ─── Stopwords ─────────────────────────────────────────────────────
-const STOPWORDS = new Set([
-    'a',
-    'an',
-    'the',
-    'and',
-    'or',
-    'but',
-    'in',
-    'on',
-    'at',
-    'to',
-    'for',
-    'of',
-    'with',
-    'by',
-    'from',
-    'as',
-    'is',
-    'was',
-    'are',
-    'were',
-    'been',
-    'be',
-    'have',
-    'has',
-    'had',
-    'do',
-    'does',
-    'did',
-    'will',
-    'would',
-    'could',
-    'should',
-    'may',
-    'might',
-    'shall',
-    'can',
-    'need',
-    'must',
-    'it',
-    'its',
-    'this',
-    'that',
-    'these',
-    'those',
-    'i',
-    'you',
-    'he',
-    'she',
-    'we',
-    'they',
-    'me',
-    'him',
-    'her',
-    'us',
-    'them',
-    'my',
-    'your',
-    'his',
-    'our',
-    'their',
-    'what',
-    'which',
-    'who',
-    'whom',
-    'when',
-    'where',
-    'why',
-    'how',
-    'all',
-    'each',
-    'every',
-    'both',
-    'few',
-    'more',
-    'most',
-    'other',
-    'some',
-    'such',
-    'no',
-    'not',
-    'only',
-    'same',
-    'so',
-    'than',
-    'too',
-    'very',
-    'just',
-    'because',
-    'if',
-    'then',
-    'else',
-    'about',
-    'up',
-    'out',
-    'into',
-]);
-// ─── Text Processing (pure functions) ────────────────────────────
-function tokenize(text) {
-    return text
-        .toLowerCase()
-        .replace(/[^a-z0-9\s-]/g, ' ')
-        .split(/\s+/)
-        .filter((t) => t.length > 2 && !STOPWORDS.has(t));
-}
-function calculateTf(tokens) {
-    const tf = new Map();
-    for (const token of tokens) {
-        tf.set(token, (tf.get(token) ?? 0) + 1);
-    }
-    const len = tokens.length || 1;
-    for (const [term, count] of tf) {
-        tf.set(term, count / len);
-    }
-    return tf;
-}
-function calculateTfIdf(tokens, vocabulary) {
-    const tf = calculateTf(tokens);
-    const tfidf = new Map();
-    for (const [term, tfValue] of tf) {
-        const idf = vocabulary.get(term) ?? 0;
-        if (idf > 0) {
-            tfidf.set(term, tfValue * idf);
-        }
-    }
-    return tfidf;
-}
-function cosineSimilarity(a, b) {
-    let dot = 0;
-    let normA = 0;
-    let normB = 0;
-    for (const [term, valA] of a) {
-        normA += valA * valA;
-        const valB = b.get(term);
-        if (valB !== undefined) {
-            dot += valA * valB;
-        }
-    }
-    for (const [, valB] of b) {
-        normB += valB * valB;
-    }
-    const denom = Math.sqrt(normA) * Math.sqrt(normB);
-    return denom === 0 ? 0 : dot / denom;
-}
-function jaccardSimilarity(a, b) {
-    if (a.length === 0 && b.length === 0)
-        return 0;
-    const setA = new Set(a);
-    const setB = new Set(b);
-    let intersection = 0;
-    for (const item of setA) {
-        if (setB.has(item))
-            intersection++;
-    }
-    const union = new Set([...a, ...b]).size;
-    return union === 0 ? 0 : intersection / union;
-}
+import { tokenize, calculateTf, calculateTfIdf, cosineSimilarity, jaccardSimilarity, } from '../text/similarity.js';
 // ─── Severity scoring ──────────────────────────────────────────────
 const SEVERITY_SCORES = {
     critical: 1.0,
@@ -165,20 +8,11 @@ const SEVERITY_SCORES = {
 // ─── Brain Class ─────────────────────────────────────────────────
 const DEFAULT_WEIGHTS = {
     semantic: 0.4,
-    vector: 0.0,
     severity: 0.15,
     recency: 0.15,
     tagOverlap: 0.15,
     domainMatch: 0.15,
 };
-const COGNEE_WEIGHTS = {
-    semantic: 0.25,
-    vector: 0.35,
-    severity: 0.1,
-    recency: 0.1,
-    tagOverlap: 0.1,
-    domainMatch: 0.1,
-};
 const WEIGHT_BOUND = 0.15;
 const FEEDBACK_THRESHOLD = 30;
 const DUPLICATE_BLOCK_THRESHOLD = 0.8;
@@ -186,16 +20,14 @@ const DUPLICATE_WARN_THRESHOLD = 0.6;
 const RECENCY_HALF_LIFE_DAYS = 365;
 export class Brain {
     vault;
-    cognee;
     vocabulary = new Map();
     weights = { ...DEFAULT_WEIGHTS };
-    constructor(vault, cognee) {
+    constructor(vault) {
         this.vault = vault;
-        this.cognee = cognee;
         this.rebuildVocabulary();
         this.recomputeWeights();
     }
-    async intelligentSearch(query, options) {
+    intelligentSearch(query, options) {
         const limit = options?.limit ?? 10;
         const rawResults = this.vault.search(query, {
             domain: options?.domain,
@@ -203,104 +35,15 @@ export class Brain {
             severity: options?.severity,
             limit: Math.max(limit * 3, 30),
         });
-        // Cognee vector search (parallel, with timeout fallback)
-        let cogneeScoreMap = new Map();
-        const cogneeAvailable = this.cognee?.isAvailable ?? false;
-        if (cogneeAvailable && this.cognee) {
-            try {
-                const cogneeResults = await this.cognee.search(query, { limit: Math.max(limit * 2, 20) });
-                // Build title → entryIds reverse index from FTS results for text-based matching.
-                // Cognee assigns its own UUIDs to chunks and may strip embedded metadata during
-                // chunking, so we need multiple strategies to cross-reference results.
-                // Multiple entries can share a title, so map to arrays of IDs.
-                const titleToIds = new Map();
-                for (const r of rawResults) {
-                    const key = r.entry.title.toLowerCase().trim();
-                    const ids = titleToIds.get(key) ?? [];
-                    ids.push(r.entry.id);
-                    titleToIds.set(key, ids);
-                }
-                const vaultIdPattern = /\[vault-id:([^\]]+)\]/;
-                const unmatchedCogneeResults = [];
-                for (const cr of cogneeResults) {
-                    const text = cr.text ?? '';
-                    // Strategy 1: Extract vault ID from [vault-id:XXX] prefix (if Cognee preserved it)
-                    const vaultIdMatch = text.match(vaultIdPattern);
-                    if (vaultIdMatch) {
-                        const vaultId = vaultIdMatch[1];
-                        cogneeScoreMap.set(vaultId, Math.max(cogneeScoreMap.get(vaultId) ?? 0, cr.score));
-                        continue;
-                    }
-                    // Strategy 2: Match first line of chunk text against known entry titles.
-                    // serializeEntry() puts the title on the first line after the [vault-id:] prefix,
-                    // and Cognee's chunking typically preserves this as the chunk start.
-                    const firstLine = text.split('\n')[0]?.trim().toLowerCase() ?? '';
-                    const matchedIds = firstLine ? titleToIds.get(firstLine) : undefined;
-                    if (matchedIds) {
-                        for (const id of matchedIds) {
-                            cogneeScoreMap.set(id, Math.max(cogneeScoreMap.get(id) ?? 0, cr.score));
-                        }
-                        continue;
-                    }
-                    // Strategy 3: Check if any known title appears as a substring in the chunk.
-                    // Handles cases where the title isn't on the first line (mid-document chunks).
-                    const textLower = text.toLowerCase();
-                    let found = false;
-                    for (const [title, ids] of titleToIds) {
-                        if (title.length >= 8 && textLower.includes(title)) {
-                            for (const id of ids) {
-                                cogneeScoreMap.set(id, Math.max(cogneeScoreMap.get(id) ?? 0, cr.score));
-                            }
-                            found = true;
-                            break;
-                        }
-                    }
-                    if (!found && text.length > 0) {
-                        unmatchedCogneeResults.push({ text, score: cr.score });
-                    }
-                }
-                // Strategy 4: For Cognee-only semantic matches (not in FTS results),
-                // use the first line as a vault FTS query to find the source entry.
-                // Preserve caller filters (domain/type/severity) to avoid reintroducing
-                // entries the original query excluded.
-                for (const unmatched of unmatchedCogneeResults) {
-                    const searchTerm = unmatched.text.split('\n')[0]?.trim();
-                    if (!searchTerm || searchTerm.length < 3)
-                        continue;
-                    const vaultHits = this.vault.search(searchTerm, {
-                        domain: options?.domain,
-                        type: options?.type,
-                        severity: options?.severity,
-                        limit: 1,
-                    });
-                    if (vaultHits.length > 0) {
-                        const id = vaultHits[0].entry.id;
-                        cogneeScoreMap.set(id, Math.max(cogneeScoreMap.get(id) ?? 0, unmatched.score));
-                        // Also add to FTS results pool if not already present
-                        if (!rawResults.some((r) => r.entry.id === id)) {
-                            rawResults.push(vaultHits[0]);
-                        }
-                    }
-                }
-            }
-            catch {
-                // Cognee failed — fall back to FTS5 only
-                cogneeScoreMap = new Map();
-            }
-        }
         if (rawResults.length === 0)
             return [];
         const queryTokens = tokenize(query);
         const queryTags = options?.tags ?? [];
         const queryDomain = options?.domain;
         const now = Math.floor(Date.now() / 1000);
-        // Use cognee-aware weights only if at least one ranked candidate has a vector score
-        const hasVectorCandidate = rawResults.some((r) => cogneeScoreMap.has(r.entry.id));
-        const activeWeights = hasVectorCandidate ? this.getCogneeWeights() : this.weights;
         const ranked = rawResults.map((result) => {
             const entry = result.entry;
-            const vectorScore = cogneeScoreMap.get(entry.id) ?? 0;
-            const breakdown = this.scoreEntry(entry, queryTokens, queryTags, queryDomain, now, vectorScore, activeWeights);
+            const breakdown = this.scoreEntry(entry, queryTokens, queryTags, queryDomain, now);
             return { entry, score: breakdown.total, breakdown };
         });
         ranked.sort((a, b) => b.score - a.score);
@@ -335,10 +78,6 @@ export class Brain {
         };
         this.vault.add(fullEntry);
         this.updateVocabularyIncremental(fullEntry);
-        // Fire-and-forget Cognee sync
-        if (this.cognee?.isAvailable) {
-            this.cognee.addEntries([fullEntry]).catch(() => { });
-        }
         const result = {
             captured: true,
             id: entry.id,
@@ -354,35 +93,12 @@ export class Brain {
         db.prepare('INSERT INTO brain_feedback (query, entry_id, action) VALUES (?, ?, ?)').run(query, entryId, action);
         this.recomputeWeights();
     }
-    async getRelevantPatterns(context) {
+    getRelevantPatterns(context) {
         return this.intelligentSearch(context.query, {
             domain: context.domain,
             tags: context.tags,
         });
     }
-    async syncToCognee() {
-        if (!this.cognee?.isAvailable)
-            return { synced: 0, cognified: false };
-        const batchSize = 1000;
-        let offset = 0;
-        let totalSynced = 0;
-        while (true) {
-            const batch = this.vault.list({ limit: batchSize, offset });
-            if (batch.length === 0)
-                break;
-            const { added } = await this.cognee.addEntries(batch);
-            totalSynced += added;
-            offset += batch.length;
-            if (batch.length < batchSize)
-                break;
-        }
-        if (totalSynced === 0)
-            return { synced: 0, cognified: false };
-        let cognified = false;
-        const cognifyResult = await this.cognee.cognify();
-        cognified = cognifyResult.status === 'ok';
-        return { synced: totalSynced, cognified };
-    }
     rebuildVocabulary() {
         const entries = this.vault.list({ limit: 100000 });
         const docCount = entries.length;
@@ -419,8 +135,7 @@ export class Brain {
         return this.vocabulary.size;
     }
     // ─── Private methods ─────────────────────────────────────────────
-    scoreEntry(entry, queryTokens, queryTags, queryDomain, now, vectorScore = 0, activeWeights) {
-        const w = activeWeights ?? this.weights;
+    scoreEntry(entry, queryTokens, queryTags, queryDomain, now) {
         let semantic = 0;
         if (this.vocabulary.size > 0 && queryTokens.length > 0) {
             const entryText = [
@@ -440,14 +155,12 @@ export class Brain {
         const recency = entryAge > 0 ? Math.exp((-Math.LN2 * entryAge) / halfLifeSeconds) : 1;
         const tagOverlap = queryTags.length > 0 ? jaccardSimilarity(queryTags, entry.tags) : 0;
         const domainMatch = queryDomain && entry.domain === queryDomain ? 1.0 : 0;
-        const vector = vectorScore;
-        const total = w.semantic * semantic +
-            w.vector * vector +
-            w.severity * severity +
-            w.recency * recency +
-            w.tagOverlap * tagOverlap +
-            w.domainMatch * domainMatch;
-        return { semantic, vector, severity, recency, tagOverlap, domainMatch, total };
+        const total = this.weights.semantic * semantic +
+            this.weights.severity * severity +
+            this.weights.recency * recency +
+            this.weights.tagOverlap * tagOverlap +
+            this.weights.domainMatch * domainMatch;
+        return { semantic, severity, recency, tagOverlap, domainMatch, total };
     }
     generateTags(title, description, context) {
         const text = [title, description, context ?? ''].join(' ');
@@ -528,9 +241,6 @@ export class Brain {
         });
         tx();
     }
-    getCogneeWeights() {
-        return { ...COGNEE_WEIGHTS };
-    }
     recomputeWeights() {
         const db = this.vault.getDb();
         const feedbackCount = db.prepare('SELECT COUNT(*) as count FROM brain_feedback').get().count;
@@ -545,9 +255,7 @@ export class Brain {
         const semanticDelta = (acceptRate - 0.5) * WEIGHT_BOUND * 2;
         const newWeights = { ...DEFAULT_WEIGHTS };
         newWeights.semantic = clamp(DEFAULT_WEIGHTS.semantic + semanticDelta, DEFAULT_WEIGHTS.semantic - WEIGHT_BOUND, DEFAULT_WEIGHTS.semantic + WEIGHT_BOUND);
-        // vector stays 0 in base weights (only active during hybrid search)
-        newWeights.vector = 0;
-        const remaining = 1.0 - newWeights.semantic - newWeights.vector;
+        const remaining = 1.0 - newWeights.semantic;
         const otherSum = DEFAULT_WEIGHTS.severity +
             DEFAULT_WEIGHTS.recency +
             DEFAULT_WEIGHTS.tagOverlap +

package/dist/brain/brain.js.map

@@ -1 +1 @@
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package/dist/curator/curator.d.ts

@@ -0,0 +1,28 @@
+import type { Vault } from '../vault/vault.js';
+import type { CuratorStatus, TagNormalizationResult, CanonicalTag, DuplicateDetectionResult, Contradiction, ContradictionStatus, GroomResult, GroomAllResult, ConsolidationOptions, ConsolidationResult, ChangelogEntry, HealthAuditResult } from './types.js';
+export declare class Curator {
+    private vault;
+    constructor(vault: Vault);
+    private initializeTables;
+    private seedDefaultAliases;
+    getStatus(): CuratorStatus;
+    normalizeTag(tag: string): TagNormalizationResult;
+    normalizeTags(entryId: string): TagNormalizationResult[];
+    addTagAlias(alias: string, canonical: string): void;
+    getCanonicalTags(): CanonicalTag[];
+    private countTagUsage;
+    detectDuplicates(entryId?: string, threshold?: number): DuplicateDetectionResult[];
+    detectContradictions(threshold?: number): Contradiction[];
+    getContradictions(status?: ContradictionStatus): Contradiction[];
+    resolveContradiction(id: number, resolution: 'resolved' | 'dismissed'): Contradiction | null;
+    groomEntry(entryId: string): GroomResult | null;
+    groomAll(): GroomAllResult;
+    consolidate(options?: ConsolidationOptions): ConsolidationResult;
+    getEntryHistory(entryId: string, limit?: number): ChangelogEntry[];
+    healthAudit(): HealthAuditResult;
+    private buildVocabulary;
+    private logChange;
+    private rowToContradiction;
+    private rowToChangelog;
+}
+//# sourceMappingURL=curator.d.ts.map

package/dist/curator/curator.d.ts.map

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