@soleri/cli 9.14.3 → 9.15.0

package/dist/main.js

@@ -29,6 +29,8 @@ import { registerVault } from './commands/vault.js';
 import { registerYolo } from './commands/yolo.js';
 import { registerDream } from './commands/dream.js';
 import { registerUpdate } from './commands/update.js';
+import { registerBrain } from './commands/brain.js';
+import { registerValidateSkills } from './commands/validate-skills.js';
 const require = createRequire(import.meta.url);
 const { version } = require('../package.json');
 const RESET = '\x1b[0m';
@@ -88,5 +90,7 @@ registerVault(program);
 registerYolo(program);
 registerDream(program);
 registerUpdate(program);
+registerBrain(program);
+registerValidateSkills(program);
 program.parse();
 //# sourceMappingURL=main.js.map

package/dist/main.js.map

@@ -1 +1 @@
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+{"version":3,"file":"main.js","sourceRoot":"","sources":["../src/main.ts"],"names":[],"mappings":";AAEA,MAAM,CAAC,KAAK,CAAC,GAAG,OAAO,CAAC,QAAQ,CAAC,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC;AAC7D,IAAI,KAAK,GAAG,EAAE,EAAE,CAAC;IACf,OAAO,CAAC,KAAK,CACX,yDAAyD,OAAO,CAAC,QAAQ,CAAC,IAAI,sCAAsC,CACrH,CAAC;IACF,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;AAClB,CAAC;AAED,OAAO,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAC5C,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AACpC,OAAO,EAAE,cAAc,EAAE,MAAM,sBAAsB,CAAC;AACtD,OAAO,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAC;AAClD,OAAO,EAAE,iBAAiB,EAAE,MAAM,0BAA0B,CAAC;AAC7D,OAAO,EAAE,eAAe,EAAE,MAAM,wBAAwB,CAAC;AACzD,OAAO,EAAE,wBAAwB,EAAE,MAAM,iCAAiC,CAAC;AAC3E,OAAO,EAAE,WAAW,EAAE,MAAM,mBAAmB,CAAC;AAChD,OAAO,EAAE,cAAc,EAAE,MAAM,sBAAsB,CAAC;AACtD,OAAO,EAAE,aAAa,EAAE,MAAM,qBAAqB,CAAC;AACpD,OAAO,EAAE,kBAAkB,EAAE,MAAM,0BAA0B,CAAC;AAC9D,OAAO,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAC;AAClD,OAAO,EAAE,eAAe,EAAE,MAAM,uBAAuB,CAAC;AACxD,OAAO,EAAE,cAAc,EAAE,MAAM,sBAAsB,CAAC;AACtD,OAAO,EAAE,eAAe,EAAE,MAAM,uBAAuB,CAAC;AACxD,OAAO,EAAE,iBAAiB,EAAE,MAAM,yBAAyB,CAAC;AAC5D,OAAO,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAC;AAClD,OAAO,EAAE,cAAc,EAAE,MAAM,sBAAsB,CAAC;AACtD,OAAO,EAAE,aAAa,EAAE,MAAM,qBAAqB,CAAC;AACpD,OAAO,EAAE,gBAAgB,EAAE,MAAM,wBAAwB,CAAC;AAC1D,OAAO,EAAE,eAAe,EAAE,MAAM,uBAAuB,CAAC;AACxD,OAAO,EAAE,aAAa,EAAE,MAAM,qBAAqB,CAAC;AACpD,OAAO,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAC;AAClD,OAAO,EAAE,aAAa,EAAE,MAAM,qBAAqB,CAAC;AACpD,OAAO,EAAE,cAAc,EAAE,MAAM,sBAAsB,CAAC;AACtD,OAAO,EAAE,aAAa,EAAE,MAAM,qBAAqB,CAAC;AACpD,OAAO,EAAE,sBAAsB,EAAE,MAAM,+BAA+B,CAAC;AAEvE,MAAM,OAAO,GAAG,aAAa,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;AAC/C,MAAM,EAAE,OAAO,EAAE,GAAG,OAAO,CAAC,iBAAiB,CAAC,CAAC;AAE/C,MAAM,KAAK,GAAG,SAAS,CAAC;AACxB,MAAM,IAAI,GAAG,SAAS,CAAC;AACvB,MAAM,GAAG,GAAG,SAAS,CAAC;AACtB,MAAM,IAAI,GAAG,UAAU,CAAC;AACxB,MAAM,KAAK,GAAG,UAAU,CAAC;AACzB,MAAM,MAAM,GAAG,UAAU,CAAC;AAE1B,SAAS,WAAW;IAClB,OAAO,CAAC,GAAG,EAAE,CAAC;IACd,OAAO,CAAC,GAAG,CAAC,KAAK,IAAI,GAAG,IAAI,SAAS,KAAK,IAAI,GAAG,IAAI,OAAO,GAAG,KAAK,EAAE,CAAC,CAAC;IACxE,OAAO,CAAC,GAAG,CAAC,KAAK,GAAG,kBAAkB,KAAK,EAAE,CAAC,CAAC;IAC/C,OAAO,CAAC,GAAG,EAAE,CAAC;IACd,OAAO,CAAC,GAAG,CAAC,KAAK,KAAK,cAAc,KAAK,EAAE,CAAC,CAAC;IAC7C,OAAO,CAAC,GAAG,CAAC,OAAO,IAAI,gBAAgB,KAAK,8BAA8B,CAAC,CAAC;IAC5E,OAAO,CAAC,GAAG,CAAC,OAAO,IAAI,gBAAgB,KAAK,6BAA6B,CAAC,CAAC;IAC3E,OAAO,CAAC,GAAG,EAAE,CAAC;IACd,OAAO,CAAC,GAAG,CAAC,KAAK,MAAM,sBAAsB,KAAK,EAAE,CAAC,CAAC;IACtD,OAAO,CAAC,GAAG,CAAC,OAAO,IAAI,aAAa,KAAK,oCAAoC,CAAC,CAAC;IAC/E,OAAO,CAAC,GAAG,CAAC,OAAO,IAAI,cAAc,KAAK,2BAA2B,CAAC,CAAC;IACvE,OAAO,CAAC,GAAG,CAAC,OAAO,IAAI,oBAAoB,KAAK,4BAA4B,CAAC,CAAC;IAC9E,OAAO,CAAC,GAAG,CAAC,OAAO,IAAI,eAAe,KAAK,8BAA8B,CAAC,CAAC;IAC3E,OAAO,CAAC,GAAG,CAAC,OAAO,IAAI,iBAAiB,KAAK,qCAAqC,CAAC,CAAC;IACpF,OAAO,CAAC,GAAG,CAAC,OAAO,IAAI,mBAAmB,KAAK,oCAAoC,CAAC,CAAC;IACrF,OAAO,CAAC,GAAG,EAAE,CAAC;IACd,OAAO,CAAC,GAAG,CAAC,KAAK,GAAG,OAAO,IAAI,gBAAgB,KAAK,GAAG,GAAG,oBAAoB,KAAK,EAAE,CAAC,CAAC;IACvF,OAAO,CAAC,GAAG,EAAE,CAAC;AAChB,CAAC;AAED,MAAM,OAAO,GAAG,IAAI,OAAO,EAAE,CAAC;AAE9B,OAAO;KACJ,IAAI,CAAC,QAAQ,CAAC;KACd,WAAW,CAAC,0DAA0D,CAAC;KACvE,OAAO,CAAC,OAAO,CAAC;KAChB,MAAM,CAAC,GAAG,EAAE;IACX,WAAW,EAAE,CAAC;AAChB,CAAC,CAAC,CAAC;AAEL,cAAc,CAAC,OAAO,CAAC,CAAC;AACxB,YAAY,CAAC,OAAO,CAAC,CAAC;AACtB,iBAAiB,CAAC,OAAO,CAAC,CAAC;AAC3B,eAAe,CAAC,OAAO,CAAC,CAAC;AACzB,wBAAwB,CAAC,OAAO,CAAC,CAAC;AAClC,WAAW,CAAC,OAAO,CAAC,CAAC;AACrB,cAAc,CAAC,OAAO,CAAC,CAAC;AACxB,aAAa,CAAC,OAAO,CAAC,CAAC;AACvB,kBAAkB,CAAC,OAAO,CAAC,CAAC;AAC5B,YAAY,CAAC,OAAO,CAAC,CAAC;AACtB,eAAe,CAAC,OAAO,CAAC,CAAC;AACzB,cAAc,CAAC,OAAO,CAAC,CAAC;AACxB,eAAe,CAAC,OAAO,CAAC,CAAC;AACzB,iBAAiB,CAAC,OAAO,CAAC,CAAC;AAC3B,YAAY,CAAC,OAAO,CAAC,CAAC;AACtB,cAAc,CAAC,OAAO,CAAC,CAAC;AACxB,aAAa,CAAC,OAAO,CAAC,CAAC;AACvB,gBAAgB,CAAC,OAAO,CAAC,CAAC;AAC1B,eAAe,CAAC,OAAO,CAAC,CAAC;AACzB,aAAa,CAAC,OAAO,CAAC,CAAC;AACvB,YAAY,CAAC,OAAO,CAAC,CAAC;AACtB,aAAa,CAAC,OAAO,CAAC,CAAC;AACvB,cAAc,CAAC,OAAO,CAAC,CAAC;AACxB,aAAa,CAAC,OAAO,CAAC,CAAC;AACvB,sBAAsB,CAAC,OAAO,CAAC,CAAC;AAChC,OAAO,CAAC,KAAK,EAAE,CAAC"}

package/dist/utils/checks.js

@@ -4,8 +4,9 @@
 import { existsSync, readFileSync, readdirSync } from 'node:fs';
 import { join } from 'node:path';
 import { execFileSync } from 'node:child_process';
-import { homedir } from 'node:os';
 import { detectAgent } from './agent-context.js';
+import { detectArtifacts } from './agent-artifacts.js';
+import { resolveCorePackageJsonPath } from './core-resolver.js';
 import { getInstalledPacks } from '../hook-packs/registry.js';
 export function checkNodeVersion() {
     const [major] = process.versions.node.split('.').map(Number);
@@ -150,49 +151,33 @@ export function checkInstructionsDir(agentPath) {
     }
 }
 export function checkEngineReachable() {
-    try {
-        require.resolve('@soleri/core/package.json');
+    if (resolveCorePackageJsonPath() !== null) {
         return { status: 'pass', label: 'Engine', detail: '@soleri/core reachable' };
     }
-    catch {
-        return {
-            status: 'fail',
-            label: 'Engine',
-            detail: '@soleri/core not found — engine is required for file-tree agents',
-        };
-    }
+    return {
+        status: 'fail',
+        label: 'Engine',
+        detail: '@soleri/core not found — engine is required for file-tree agents',
+    };
 }
 function checkMcpRegistration(dir) {
     const ctx = detectAgent(dir);
     if (!ctx)
         return { status: 'warn', label: 'MCP registration', detail: 'no agent detected' };
-    const claudeJsonPath = join(homedir(), '.claude.json');
-    if (!existsSync(claudeJsonPath)) {
-        return {
-            status: 'warn',
-            label: 'MCP registration',
-            detail: '~/.claude.json not found',
-        };
-    }
-    try {
-        const config = JSON.parse(readFileSync(claudeJsonPath, 'utf-8'));
-        const servers = config.mcpServers ?? {};
-        if (ctx.agentId in servers) {
-            return {
-                status: 'pass',
-                label: 'MCP registration',
-                detail: `registered as "${ctx.agentId}"`,
-            };
-        }
+    const artifacts = detectArtifacts(ctx.agentId, ctx.agentPath);
+    if (artifacts.mcpServerEntries.length === 0) {
         return {
             status: 'warn',
             label: 'MCP registration',
-            detail: `"${ctx.agentId}" not found in ~/.claude.json`,
+            detail: `not found in ~/.claude.json, ~/.codex/config.toml, or ~/.config/opencode/opencode.json`,
         };
     }
-    catch {
-        return { status: 'fail', label: 'MCP registration', detail: 'failed to parse ~/.claude.json' };
-    }
+    const targets = [...new Set(artifacts.mcpServerEntries.map((entry) => entry.target))];
+    return {
+        status: 'pass',
+        label: 'MCP registration',
+        detail: `registered in ${targets.join(', ')}`,
+    };
 }
 function checkCognee() {
     const url = process.env.COGNEE_URL ?? 'http://localhost:8000/';

package/dist/utils/checks.js.map

@@ -1 +1 @@
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package/dist/utils/core-resolver.d.ts

@@ -0,0 +1,3 @@
+export declare function resolveCorePackageJsonPath(): string | null;
+export declare function readInstalledCoreVersion(): string | null;
+export declare function resolveInstalledEngineBin(): string | null;

package/dist/utils/core-resolver.js

@@ -0,0 +1,38 @@
+import { existsSync, readFileSync } from 'node:fs';
+import { dirname, join } from 'node:path';
+import { fileURLToPath } from 'node:url';
+function resolveCoreEntryPath() {
+    try {
+        return fileURLToPath(import.meta.resolve('@soleri/core'));
+    }
+    catch {
+        return null;
+    }
+}
+export function resolveCorePackageJsonPath() {
+    const entryPath = resolveCoreEntryPath();
+    if (!entryPath)
+        return null;
+    const packageJsonPath = join(dirname(entryPath), '..', 'package.json');
+    return existsSync(packageJsonPath) ? packageJsonPath : null;
+}
+export function readInstalledCoreVersion() {
+    const packageJsonPath = resolveCorePackageJsonPath();
+    if (!packageJsonPath)
+        return null;
+    try {
+        const pkg = JSON.parse(readFileSync(packageJsonPath, 'utf-8'));
+        return typeof pkg.version === 'string' ? pkg.version : null;
+    }
+    catch {
+        return null;
+    }
+}
+export function resolveInstalledEngineBin() {
+    const entryPath = resolveCoreEntryPath();
+    if (!entryPath)
+        return null;
+    const engineBinPath = join(dirname(entryPath), 'engine', 'bin', 'soleri-engine.js');
+    return existsSync(engineBinPath) ? engineBinPath : null;
+}
+//# sourceMappingURL=core-resolver.js.map

package/dist/utils/core-resolver.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"core-resolver.js","sourceRoot":"","sources":["../../src/utils/core-resolver.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,YAAY,EAAE,MAAM,SAAS,CAAC;AACnD,OAAO,EAAE,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AAC1C,OAAO,EAAE,aAAa,EAAE,MAAM,UAAU,CAAC;AAEzC,SAAS,oBAAoB;IAC3B,IAAI,CAAC;QACH,OAAO,aAAa,CAAC,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,cAAc,CAAC,CAAC,CAAC;IAC5D,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,IAAI,CAAC;IACd,CAAC;AACH,CAAC;AAED,MAAM,UAAU,0BAA0B;IACxC,MAAM,SAAS,GAAG,oBAAoB,EAAE,CAAC;IACzC,IAAI,CAAC,SAAS;QAAE,OAAO,IAAI,CAAC;IAE5B,MAAM,eAAe,GAAG,IAAI,CAAC,OAAO,CAAC,SAAS,CAAC,EAAE,IAAI,EAAE,cAAc,CAAC,CAAC;IACvE,OAAO,UAAU,CAAC,eAAe,CAAC,CAAC,CAAC,CAAC,eAAe,CAAC,CAAC,CAAC,IAAI,CAAC;AAC9D,CAAC;AAED,MAAM,UAAU,wBAAwB;IACtC,MAAM,eAAe,GAAG,0BAA0B,EAAE,CAAC;IACrD,IAAI,CAAC,eAAe;QAAE,OAAO,IAAI,CAAC;IAElC,IAAI,CAAC;QACH,MAAM,GAAG,GAAG,IAAI,CAAC,KAAK,CAAC,YAAY,CAAC,eAAe,EAAE,OAAO,CAAC,CAA0B,CAAC;QACxF,OAAO,OAAO,GAAG,CAAC,OAAO,KAAK,QAAQ,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,IAAI,CAAC;IAC9D,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,IAAI,CAAC;IACd,CAAC;AACH,CAAC;AAED,MAAM,UAAU,yBAAyB;IACvC,MAAM,SAAS,GAAG,oBAAoB,EAAE,CAAC;IACzC,IAAI,CAAC,SAAS;QAAE,OAAO,IAAI,CAAC;IAE5B,MAAM,aAAa,GAAG,IAAI,CAAC,OAAO,CAAC,SAAS,CAAC,EAAE,QAAQ,EAAE,KAAK,EAAE,kBAAkB,CAAC,CAAC;IACpF,OAAO,UAAU,CAAC,aAAa,CAAC,CAAC,CAAC,CAAC,aAAa,CAAC,CAAC,CAAC,IAAI,CAAC;AAC1D,CAAC"}

package/dist/utils/vault-db.d.ts

@@ -0,0 +1,5 @@
+/**
+ * Resolve the vault DB path for a given agent.
+ * Checks the current path first, then falls back to the legacy dot-prefixed path.
+ */
+export declare function resolveVaultDbPath(agentId: string): string | null;

package/dist/utils/vault-db.js

@@ -0,0 +1,17 @@
+import { existsSync } from 'node:fs';
+import { join } from 'node:path';
+import { SOLERI_HOME } from '@soleri/core';
+/**
+ * Resolve the vault DB path for a given agent.
+ * Checks the current path first, then falls back to the legacy dot-prefixed path.
+ */
+export function resolveVaultDbPath(agentId) {
+    const newDbPath = join(SOLERI_HOME, agentId, 'vault.db');
+    const legacyDbPath = join(SOLERI_HOME, '..', `.${agentId}`, 'vault.db');
+    if (existsSync(newDbPath))
+        return newDbPath;
+    if (existsSync(legacyDbPath))
+        return legacyDbPath;
+    return null;
+}
+//# sourceMappingURL=vault-db.js.map

package/dist/utils/vault-db.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"vault-db.js","sourceRoot":"","sources":["../../src/utils/vault-db.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,SAAS,CAAC;AACrC,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AACjC,OAAO,EAAE,WAAW,EAAE,MAAM,cAAc,CAAC;AAE3C;;;GAGG;AACH,MAAM,UAAU,kBAAkB,CAAC,OAAe;IAChD,MAAM,SAAS,GAAG,IAAI,CAAC,WAAW,EAAE,OAAO,EAAE,UAAU,CAAC,CAAC;IACzD,MAAM,YAAY,GAAG,IAAI,CAAC,WAAW,EAAE,IAAI,EAAE,IAAI,OAAO,EAAE,EAAE,UAAU,CAAC,CAAC;IACxE,IAAI,UAAU,CAAC,SAAS,CAAC;QAAE,OAAO,SAAS,CAAC;IAC5C,IAAI,UAAU,CAAC,YAAY,CAAC;QAAE,OAAO,YAAY,CAAC;IAClD,OAAO,IAAI,CAAC;AACd,CAAC"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@soleri/cli",
-  "version": "9.14.3",
+  "version": "9.15.0",
   "description": "Developer CLI for creating and managing Soleri AI agents.",
   "keywords": [
     "agent",

package/src/__tests__/doctor.test.ts

@@ -104,7 +104,7 @@ describe('doctor command', () => {
   describe('runAllChecks', () => {
     it('should return array of check results', { timeout: 20_000 }, () => {
       const results = runAllChecks(tempDir);
-      expect(results.length).toBeGreaterThan(0);
+      expect(results.length).toBe(9); // 4 common + 2 non-filetree (nodeModules + agentBuild) + 3 shared (mcpReg + hookPacks + cognee)
       for (const r of results) {
         expect(['pass', 'fail', 'warn']).toContain(r.status);
         expect(r.label).toBeTruthy();
@@ -117,5 +117,50 @@ describe('doctor command', () => {
       expect(labels).toContain('Node.js');
       expect(labels).toContain('npm');
     });
+
+    it('should detect Codex MCP registration for file-tree agents', { timeout: 20_000 }, () => {
+      const originalHome = process.env.HOME ?? '';
+      const originalUserProfile = process.env.USERPROFILE ?? '';
+      process.env.HOME = tempDir;
+      process.env.USERPROFILE = tempDir;
+
+      try {
+        const agentDir = join(tempDir, 'agent');
+        mkdirSync(join(agentDir, 'instructions'), { recursive: true });
+        mkdirSync(join(tempDir, '.codex'), { recursive: true });
+
+        writeFileSync(
+          join(agentDir, 'agent.yaml'),
+          [
+            'id: test-agent',
+            'name: Test Agent',
+            'role: A test agent',
+            'description: A minimal file-tree agent for doctor testing',
+            'domains: []',
+            'principles: []',
+            '',
+          ].join('\n'),
+        );
+        writeFileSync(join(agentDir, 'instructions', 'usage.md'), '# Usage');
+        writeFileSync(
+          join(tempDir, '.codex', 'config.toml'),
+          [
+            '[mcp_servers.test-agent]',
+            'command = "node"',
+            'args = ["engine.js", "--agent", "agent.yaml"]',
+            '',
+          ].join('\n'),
+        );
+
+        const results = runAllChecks(agentDir);
+        const registration = results.find((r) => r.label === 'MCP registration');
+        expect(registration).toBeDefined();
+        expect(registration!.status).toBe('pass');
+        expect(registration!.detail).toContain('codex');
+      } finally {
+        process.env.HOME = originalHome;
+        process.env.USERPROFILE = originalUserProfile;
+      }
+    });
   });
 });

package/src/__tests__/install-verify.test.ts

@@ -98,7 +98,7 @@ describe('verifyInstall', () => {
     const checks = verifyInstall('test-agent', agentDir, 'claude');
 
     expect(Array.isArray(checks)).toBe(true);
-    expect(checks.length).toBeGreaterThan(0);
+    expect(checks.length).toBe(3); // claude config entry + engine binary + agent.yaml
     for (const check of checks) {
       expect(check).toHaveProperty('label');
       expect(check).toHaveProperty('passed');

package/src/__tests__/install.test.ts

@@ -1,5 +1,5 @@
 import { describe, it, expect, beforeEach, afterEach, vi } from 'vitest';
-import { mkdirSync, rmSync, writeFileSync, readFileSync } from 'node:fs';
+import { mkdirSync, rmSync, readFileSync } from 'node:fs';
 import { join } from 'node:path';
 import { tmpdir } from 'node:os';
 import { toPosix, getNextStepMessage, resolveEngineBin } from '../commands/install.js';
@@ -82,20 +82,17 @@ describe('resolveEngineBin', () => {
 describe('npx fallback warning', () => {
   afterEach(() => {
     vi.resetModules();
-    vi.doUnmock('node:module');
+    vi.doUnmock('../utils/core-resolver.js');
   });
 
   it('returns npx fallback when core resolution fails', async () => {
-    vi.doMock('node:module', async () => {
-      const actual = await vi.importActual<typeof import('node:module')>('node:module');
+    vi.doMock('../utils/core-resolver.js', async () => {
+      const actual = await vi.importActual<typeof import('../utils/core-resolver.js')>(
+        '../utils/core-resolver.js',
+      );
       return {
         ...actual,
-        createRequire: () =>
-          ({
-            resolve: () => {
-              throw new Error('MODULE_NOT_FOUND');
-            },
-          }) as ReturnType<typeof import('node:module').createRequire>,
+        resolveInstalledEngineBin: () => null,
       };
     });
 

package/src/commands/agent.ts

@@ -6,7 +6,6 @@
  */
 
 import { join, dirname } from 'node:path';
-import { createRequire } from 'node:module';
 import {
   existsSync,
   readFileSync,
@@ -26,6 +25,7 @@ import { PackLockfile, checkNpmVersion, checkVersionCompat, SOLERI_HOME } from '
 import {
   generateClaudeMdTemplate,
   generateInjectClaudeMd,
+  generateAgentsMd,
   generateSkills,
 } from '@soleri/forge/lib';
 import { composeClaudeMd, getModularEngineRules, AgentYamlSchema } from '@soleri/forge/lib';
@@ -48,6 +48,42 @@ function readEngineFeatures(agentPath: string): EngineFeature[] | undefined {
   }
 }
 
+function readFileTreeAgentConfig(agentPath: string): AgentConfig | null {
+  try {
+    const yamlPath = join(agentPath, 'agent.yaml');
+    if (!existsSync(yamlPath)) return null;
+
+    const parsed = AgentYamlSchema.parse(parseYaml(readFileSync(yamlPath, 'utf-8')));
+    return {
+      id: parsed.id,
+      name: parsed.name,
+      role: parsed.role,
+      description: parsed.description,
+      domains: parsed.domains,
+      principles: parsed.principles,
+      tone: parsed.tone,
+      greeting: parsed.greeting,
+      persona: parsed.persona,
+      vaults: parsed.vaults,
+      setupTarget: parsed.setup?.target ?? 'claude',
+    } as AgentConfig;
+  } catch {
+    return null;
+  }
+}
+
+function readAgentCoreVersion(agentPath: string): string | null {
+  const corePkgPath = join(agentPath, 'node_modules', '@soleri', 'core', 'package.json');
+  if (!existsSync(corePkgPath)) return null;
+
+  try {
+    const pkg = JSON.parse(readFileSync(corePkgPath, 'utf-8')) as { version?: unknown };
+    return typeof pkg.version === 'string' ? pkg.version : null;
+  } catch {
+    return null;
+  }
+}
+
 export function registerAgent(program: Command): void {
   const agent = program.command('agent').description('Agent lifecycle management');
 
@@ -83,14 +119,7 @@ export function registerAgent(program: Command): void {
         }
 
         // Resolve engine version via require.resolve
-        let engineVersion = 'not installed';
-        try {
-          const req = createRequire(join(ctx.agentPath, 'package.json'));
-          const corePkgPath = req.resolve('@soleri/core/package.json');
-          engineVersion = JSON.parse(readFileSync(corePkgPath, 'utf-8')).version || 'unknown';
-        } catch {
-          engineVersion = 'not installed';
-        }
+        const engineVersion = readAgentCoreVersion(ctx.agentPath) ?? 'not installed';
 
         // Check for core update
         const latestCore = checkNpmVersion('@soleri/core');
@@ -219,14 +248,7 @@ export function registerAgent(program: Command): void {
       // ─── File-tree agent (v7+) ────────────────────────────────
       if (ctx.format === 'filetree') {
         // Resolve installed @soleri/core version
-        let installedVersion: string | null = null;
-        try {
-          const req = createRequire(import.meta.url);
-          const corePkgPath = req.resolve('@soleri/core/package.json');
-          installedVersion = JSON.parse(readFileSync(corePkgPath, 'utf-8')).version ?? null;
-        } catch {
-          // @soleri/core not resolvable — will show as unknown
-        }
+        const installedVersion = readAgentCoreVersion(ctx.agentPath);
 
         // Check latest version on npm
         const latestCore = checkNpmVersion('@soleri/core');
@@ -382,6 +404,14 @@ export function registerAgent(program: Command): void {
       if (ctx.format === 'filetree') {
         const enginePath = join(ctx.agentPath, 'instructions', '_engine.md');
         const claudeMdPath = join(ctx.agentPath, 'CLAUDE.md');
+        const agentsMdPath = join(ctx.agentPath, 'AGENTS.md');
+        const config = readFileTreeAgentConfig(ctx.agentPath);
+
+        if (!config) {
+          p.log.error('Could not parse agent.yaml for AGENTS.md regeneration.');
+          process.exit(1);
+          return;
+        }
 
         // Generate skills from latest forge templates
         const skillFiles = opts.skipSkills
@@ -391,6 +421,7 @@ export function registerAgent(program: Command): void {
         if (opts.dryRun) {
           p.log.info(`Would regenerate: ${enginePath}`);
           p.log.info(`Would regenerate: ${claudeMdPath}`);
+          p.log.info(`Would regenerate: ${agentsMdPath}`);
           if (skillFiles.length > 0) {
             const newSkills = skillFiles.filter(
               ([relPath]) => !existsSync(join(ctx.agentPath, relPath)),
@@ -442,6 +473,11 @@ export function registerAgent(program: Command): void {
         p.log.success(
           `Regenerated ${claudeMdPath} (${result.sources.length} sources, ${result.content.length} bytes)`,
         );
+
+        // 4. Regenerate AGENTS.md for Codex/OpenCode
+        const agentsMd = generateAgentsMd(config);
+        writeFileSync(agentsMdPath, agentsMd, 'utf-8');
+        p.log.success(`Regenerated ${agentsMdPath} (${agentsMd.length} bytes)`);
         return;
       }
 

package/src/commands/brain.ts

@@ -0,0 +1,93 @@
+/**
+ * Brain CLI — brain session management.
+ *
+ * `soleri brain close-orphans`              — close orphaned sessions (default: --max-age 1h)
+ * `soleri brain close-orphans --max-age 2h` — close sessions older than 2h
+ */
+
+import type { Command } from 'commander';
+import { detectAgent } from '../utils/agent-context.js';
+import { pass, fail, info, heading } from '../utils/logger.js';
+import { resolveVaultDbPath } from '../utils/vault-db.js';
+
+function parseMaxAge(value: string): number {
+  const match = value.match(/^(\d+)(h|m|s)$/);
+  if (!match) throw new Error(`Invalid --max-age format "${value}". Use e.g. 1h, 30m, 90s`);
+  const n = parseInt(match[1], 10);
+  const unit = match[2];
+  if (unit === 'h') return n * 60 * 60 * 1000;
+  if (unit === 'm') return n * 60 * 1000;
+  return n * 1000;
+}
+
+export function registerBrain(program: Command): void {
+  const brain = program.command('brain').description('Brain session management');
+
+  brain
+    .command('close-orphans')
+    .description('Close orphaned brain sessions that were never completed')
+    .option('--max-age <duration>', 'Close sessions older than this age (e.g. 1h, 30m)', '1h')
+    .action(async (opts: { maxAge: string }) => {
+      const agent = detectAgent();
+      if (!agent) {
+        fail('Not in a Soleri agent project', 'Run from an agent directory');
+        process.exit(1);
+      }
+
+      const dbPath = resolveVaultDbPath(agent.agentId);
+      if (!dbPath) {
+        info('Vault DB not found — no sessions to close.');
+        process.exit(0);
+      }
+
+      let maxAgeMs: number;
+      try {
+        maxAgeMs = parseMaxAge(opts.maxAge);
+      } catch (e: unknown) {
+        fail(
+          e instanceof Error ? e.message : String(e),
+          'Example: soleri brain close-orphans --max-age 1h',
+        );
+        process.exit(1);
+      }
+
+      const { Vault, Brain, BrainIntelligence } = await import('@soleri/core');
+      const vault = new Vault(dbPath);
+
+      try {
+        const brainInstance = new Brain(vault);
+        const intelligence = new BrainIntelligence(vault, brainInstance);
+
+        const cutoff = new Date(Date.now() - maxAgeMs).toISOString().replace('T', ' ').slice(0, 19);
+        const activeSessions = intelligence.listSessions({ active: true, limit: 1000 });
+        const orphans = activeSessions.filter((s) => s.startedAt < cutoff);
+
+        if (orphans.length === 0) {
+          info(`No orphaned sessions older than ${opts.maxAge}.`);
+          process.exit(0);
+        }
+
+        heading('Brain — Close Orphans');
+
+        let closed = 0;
+        for (const s of orphans) {
+          try {
+            intelligence.lifecycle({
+              action: 'end',
+              sessionId: s.id,
+              planOutcome: 'abandoned',
+              context: `auto-closed via CLI: no completion after ${opts.maxAge}`,
+            });
+            closed++;
+          } catch {
+            // best-effort — never block on failures
+          }
+        }
+
+        pass(`Closed ${closed} orphaned session${closed === 1 ? '' : 's'}`);
+        process.exit(0);
+      } finally {
+        vault.close();
+      }
+    });
+}

package/src/commands/dream.ts

@@ -7,20 +7,10 @@
  * `soleri dream status`                 — show dream status + cron info
  */
 
-import { existsSync } from 'node:fs';
-import { join } from 'node:path';
 import type { Command } from 'commander';
 import { detectAgent } from '../utils/agent-context.js';
 import { pass, fail, info, heading, dim } from '../utils/logger.js';
-import { SOLERI_HOME } from '@soleri/core';
-
-function resolveVaultDbPath(agentId: string): string | null {
-  const newDbPath = join(SOLERI_HOME, agentId, 'vault.db');
-  const legacyDbPath = join(SOLERI_HOME, '..', `.${agentId}`, 'vault.db');
-  if (existsSync(newDbPath)) return newDbPath;
-  if (existsSync(legacyDbPath)) return legacyDbPath;
-  return null;
-}
+import { resolveVaultDbPath } from '../utils/vault-db.js';
 
 export function registerDream(program: Command): void {
   const dream = program.command('dream').description('Vault memory consolidation');

package/src/commands/install.ts

@@ -1,5 +1,4 @@
 import type { Command } from 'commander';
-import { createRequire } from 'node:module';
 import {
   accessSync,
   constants as fsConstants,
@@ -13,6 +12,7 @@ import { homedir } from 'node:os';
 import * as p from '@clack/prompts';
 import { detectAgent } from '../utils/agent-context.js';
 import { detectArtifacts } from '../utils/agent-artifacts.js';
+import { resolveInstalledEngineBin } from '../utils/core-resolver.js';
 
 /** Default parent directory for agents: ~/.soleri/ */
 const SOLERI_HOME = process.env.SOLERI_HOME ?? join(homedir(), '.soleri');
@@ -27,13 +27,8 @@ export const toPosix = (p: string): string => p.replace(/\\/g, '/');
  * Falls back to `npx @soleri/engine` if resolution fails (e.g. not installed globally).
  */
 export function resolveEngineBin(): { command: string; bin: string } {
-  try {
-    const require = createRequire(import.meta.url);
-    const bin = require.resolve('@soleri/core/dist/engine/bin/soleri-engine.js');
-    return { command: 'node', bin };
-  } catch {
-    return { command: 'npx', bin: '@soleri/engine' };
-  }
+  const bin = resolveInstalledEngineBin();
+  return bin ? { command: 'node', bin } : { command: 'npx', bin: '@soleri/engine' };
 }
 
 /** MCP server entry for file-tree agents (resolved engine path, no npx) */