@sofatutor/agent-bridge 0.14.0 → 0.15.0

package/README.md

@@ -14,7 +14,7 @@ That's it. The wizard walks you through three questions:
 
 1. **Tools** — VS Code, Cursor, Claude, Pi, or a custom folder.
 2. **Sources** — a Git URL (or local path) that holds your shared skills, e.g. `https://github.com/sofatutor/ai-hub.git`.
-3. **Domains** — tick the folders you want from each source. Optionally pick single skills/agents/files.
+3. **What to sync** — a tree of every domain in each source. Tick a domain to take all of it, or open it and tick single skills, agents or files.
 
 It saves `.agent-bridge/config.yml`, offers to install git hooks, and syncs immediately.
 

package/dist/index.mjs

@@ -7,6 +7,7 @@ import yaml from "js-yaml";
 import { z } from "zod";
 import { execFileSync, execSync } from "node:child_process";
 import fsExtra from "fs-extra";
+import { Prompt, isCancel } from "@clack/core";
 //#region src/lib/config.ts
 const SAFE_NAME_RE = /^[A-Za-z0-9._-]+$/;
 const safeName = z.string().min(1).refine((v) => SAFE_NAME_RE.test(v) && v !== "." && v !== "..", { message: "Only [A-Za-z0-9._-] characters allowed, cannot be . or .." });
@@ -940,8 +941,188 @@ function detectToolRootDuplicates(entries) {
 	return duplicates;
 }
 //#endregion
+//#region src/lib/tree.ts
+var TreeModel = class {
+	selected = /* @__PURE__ */ new Set();
+	expanded = /* @__PURE__ */ new Set();
+	cursor = 0;
+	constructor(roots, opts = {}) {
+		this.roots = roots;
+		const depth = opts.expandDepth ?? 1;
+		const expand = (nodes, d) => {
+			if (d >= depth) return;
+			for (const n of nodes) if (n.children?.length) {
+				this.expanded.add(n);
+				expand(n.children, d + 1);
+			}
+		};
+		expand(roots, 0);
+		for (const v of opts.initialSelected ?? []) this.selected.add(v);
+	}
+	/** Visible rows in display order, honoring collapsed nodes. */
+	rows() {
+		const out = [];
+		const walk = (nodes, depth, parent) => {
+			for (const node of nodes) {
+				out.push({
+					node,
+					depth,
+					parent
+				});
+				if (node.children?.length && this.expanded.has(node)) walk(node.children, depth + 1, node);
+			}
+		};
+		walk(this.roots, 0);
+		return out;
+	}
+	current() {
+		return this.rows()[this.cursor];
+	}
+	isExpanded(node) {
+		return this.expanded.has(node);
+	}
+	leaves(node) {
+		if (!node.children?.length) return node.value !== void 0 ? [node.value] : [];
+		return node.children.flatMap((c) => this.leaves(c));
+	}
+	state(node) {
+		const leaves = this.leaves(node);
+		if (leaves.length === 0) return "none";
+		const n = leaves.filter((l) => this.selected.has(l)).length;
+		return n === 0 ? "none" : n === leaves.length ? "all" : "some";
+	}
+	/** Space: leaf toggles; parent selects all descendants unless already all. */
+	toggle() {
+		const row = this.current();
+		if (!row) return;
+		const leaves = this.leaves(row.node);
+		if (this.state(row.node) === "all") for (const l of leaves) this.selected.delete(l);
+		else for (const l of leaves) this.selected.add(l);
+	}
+	move(delta) {
+		const n = this.rows().length;
+		if (n === 0) return;
+		this.cursor = (this.cursor + delta + n) % n;
+	}
+	/** Right: expand. On a leaf or an open node, nothing happens. */
+	expand() {
+		const row = this.current();
+		if (row?.node.children?.length) this.expanded.add(row.node);
+	}
+	/** Left: collapse an open node; on a closed node or leaf, jump to its parent. */
+	collapse() {
+		const row = this.current();
+		if (!row) return;
+		if (row.node.children?.length && this.expanded.has(row.node)) {
+			this.expanded.delete(row.node);
+			return;
+		}
+		if (row.parent) {
+			const idx = this.rows().findIndex((r) => r.node === row.parent);
+			if (idx >= 0) this.cursor = idx;
+		}
+	}
+	toggleExpand() {
+		const row = this.current();
+		if (!row?.node.children?.length) return;
+		if (this.expanded.has(row.node)) this.expanded.delete(row.node);
+		else this.expanded.add(row.node);
+	}
+};
+//#endregion
+//#region src/lib/tree-prompt.ts
+const tty = process.stdout.isTTY && !process.env.NO_COLOR;
+const paint = (code, s) => tty ? `\x1b[${code}m${s}\x1b[39m` : s;
+const dim = (s) => tty ? `\x1b[2m${s}\x1b[22m` : s;
+const cyan = (s) => paint(36, s);
+const green = (s) => paint(32, s);
+const yellow = (s) => paint(33, s);
+const red = (s) => paint(31, s);
+const gray = (s) => paint(90, s);
+const S_BAR = "│";
+const S_BAR_END = "└";
+const CHECK = {
+	none: "◻",
+	some: yellow("◧"),
+	all: green("◼")
+};
+function symbol(state) {
+	if (state === "cancel") return red("■");
+	if (state === "error") return yellow("▲");
+	if (state === "submit") return green("◇");
+	return cyan("◆");
+}
+/**
+* A checkbox tree. Space toggles the node under the cursor (a parent toggles
+* everything beneath it), ←/→ collapse/expand, Enter confirms.
+* Resolves to the selected leaf values, or the clack cancel symbol.
+*/
+async function treeSelect(opts) {
+	const model = new TreeModel(opts.tree, {
+		expandDepth: opts.expandDepth,
+		initialSelected: opts.initialValues
+	});
+	const maxItems = Math.max(5, opts.maxItems ?? (process.stdout.rows || 24) - 6);
+	const prompt = new Prompt({
+		validate: () => {
+			if (opts.required !== false && model.selected.size === 0) return "Select at least one item.";
+		},
+		render() {
+			const title = `${gray(S_BAR)}\n${symbol(this.state)}  ${opts.message}\n`;
+			if (this.state === "submit") {
+				const n = model.selected.size;
+				return `${title}${gray(S_BAR)}  ${dim(`${n} item${n === 1 ? "" : "s"} selected`)}`;
+			}
+			if (this.state === "cancel") return `${title}${gray(S_BAR)}  ${dim("cancelled")}\n${gray(S_BAR)}`;
+			const rows = model.rows();
+			let start = 0;
+			if (rows.length > maxItems) start = Math.min(Math.max(0, model.cursor - Math.floor(maxItems / 2)), rows.length - maxItems);
+			const end = Math.min(rows.length, start + maxItems);
+			const lines = [];
+			if (start > 0) lines.push(`${cyan(S_BAR)}  ${dim("…")}`);
+			for (let i = start; i < end; i++) {
+				const { node, depth } = rows[i];
+				const active = i === model.cursor;
+				const arrow = !!node.children?.length ? model.isExpanded(node) ? "▾" : "▸" : " ";
+				const box = CHECK[model.state(node)];
+				const indent = "  ".repeat(depth);
+				let label = active ? node.label : dim(node.label);
+				if (node.hint) label += ` ${dim(node.hint)}`;
+				lines.push(`${cyan(S_BAR)}  ${indent}${dim(arrow)} ${box} ${label}`);
+			}
+			if (end < rows.length) lines.push(`${cyan(S_BAR)}  ${dim("…")}`);
+			const footer = this.state === "error" ? `${yellow(S_BAR_END)}  ${yellow(this.error)}` : `${cyan(S_BAR_END)}  ${dim("space toggle · ←/→ collapse/expand · enter confirm")}`;
+			return `${title}${lines.join("\n")}\n${footer}\n`;
+		}
+	}, false);
+	prompt.on("cursor", (key) => {
+		switch (key) {
+			case "up":
+				model.move(-1);
+				break;
+			case "down":
+				model.move(1);
+				break;
+			case "left":
+				model.collapse();
+				break;
+			case "right":
+				model.expand();
+				break;
+			case "space":
+				model.toggle();
+				break;
+		}
+		prompt.value = [...model.selected];
+	});
+	prompt.value = [...model.selected];
+	const result = await prompt.prompt();
+	if (isCancel(result)) return result;
+	return [...model.selected];
+}
+//#endregion
 //#region src/lib/version.ts
-const VERSION = "0.14.0";
+const VERSION = "0.15.0";
 //#endregion
 //#region src/lib/migrations/index.ts
 const migrations = [{
@@ -1609,11 +1790,15 @@ async function promptSources(repoRoot) {
 	return sources;
 }
 /**
-* Show every domain found in every source as one grouped checklist
-* (group = source). Returns the picked domain names per source.
+* One checkbox tree: source → domain → feature type → feature (plus a
+* `files` group per domain). Ticking a node ticks everything beneath it.
+* Returns, per source, the picked domains with their `include` lists
+* (`undefined` include = whole domain).
 */
-async function promptDomains(repoRoot, sources) {
-	const options = {};
+async function promptSelection(repoRoot, sources, toolNames) {
+	const SEP = "\0";
+	const contentsByKey = /* @__PURE__ */ new Map();
+	const tree = [];
 	for (const source of sources) {
 		const srcPath = resolveSourcePath(repoRoot, source);
 		const domains = await listDomains(srcPath);
@@ -1621,60 +1806,74 @@ async function promptDomains(repoRoot, sources) {
 			p.log.warn(`${source.name}: no domain folders found — nothing to select.`);
 			continue;
 		}
-		options[source.name] = [];
+		const domainNodes = [];
 		for (const domain of domains) {
-			const hint = (await listDomainContents(srcPath, domain, [])).featureTypes.filter((ft) => ft.features.length > 0).map((ft) => `${ft.features.length} ${ft.name}`).join(", ");
-			options[source.name].push({
-				value: `${source.name}/${domain}`,
+			const contents = await listDomainContents(srcPath, domain, toolNames);
+			contentsByKey.set(`${source.name}${SEP}${domain}`, contents);
+			const prefix = `${source.name}${SEP}${domain}${SEP}`;
+			const children = contents.featureTypes.filter((ft) => ft.features.length > 0).map((ft) => ({
+				label: ft.name,
+				hint: `(${ft.features.length})`,
+				children: ft.features.map((f) => ({
+					label: f,
+					value: `${prefix}${ft.name}/${f}`
+				}))
+			}));
+			if (contents.files.length > 0) children.push({
+				label: "files",
+				children: contents.files.map((f) => ({
+					label: f,
+					value: `${prefix}${f}`
+				}))
+			});
+			const hint = contents.featureTypes.filter((ft) => ft.features.length > 0).map((ft) => `${ft.features.length} ${ft.name}`).join(", ");
+			domainNodes.push(children.length > 0 ? {
 				label: domain,
-				hint: hint || void 0
+				hint: hint ? `(${hint})` : void 0,
+				children
+			} : {
+				label: domain,
+				hint: "(empty)",
+				value: prefix
 			});
 		}
+		tree.push({
+			label: source.name,
+			children: domainNodes
+		});
 	}
-	if (Object.keys(options).length === 0) {
+	if (tree.length === 0) {
 		p.cancel("No domains found in any source. Check the source layout: <source>/<domain>/<feature-type>/…");
 		process.exit(1);
 	}
-	const picked = await p.groupMultiselect({
-		message: "Which domains do you want to sync? (space = toggle, pick a source to toggle all its domains)",
-		options,
+	const picked = await treeSelect({
+		message: "What do you want to sync? Tick a domain to take all of it, or open it and pick pieces.",
+		tree,
+		expandDepth: 1,
 		required: true
 	});
 	cancelled(picked);
-	const bySource = /* @__PURE__ */ new Map();
+	const byDomain = /* @__PURE__ */ new Map();
 	for (const value of picked) {
-		const idx = value.indexOf("/");
-		const sourceName = value.slice(0, idx);
-		const domain = value.slice(idx + 1);
-		bySource.set(sourceName, [...bySource.get(sourceName) ?? [], domain]);
+		const [sourceName, domain, rel] = value.split(SEP);
+		const key = `${sourceName}${SEP}${domain}`;
+		const set = byDomain.get(key) ?? /* @__PURE__ */ new Set();
+		if (rel) set.add(rel);
+		byDomain.set(key, set);
+	}
+	const result = /* @__PURE__ */ new Map();
+	for (const [key, rels] of byDomain) {
+		const [sourceName, domain] = key.split(SEP);
+		const contents = contentsByKey.get(key);
+		const include = rels.size === 0 ? void 0 : buildInclude(contents, rels);
+		const list = result.get(sourceName) ?? [];
+		list.push(include ? {
+			name: domain,
+			include
+		} : { name: domain });
+		result.set(sourceName, list);
 	}
-	return bySource;
-}
-/** Let the user deselect individual features / files inside one domain. */
-async function promptInclude(srcPath, sourceName, domain, toolNames) {
-	const contents = await listDomainContents(srcPath, domain, toolNames);
-	const options = {};
-	for (const ft of contents.featureTypes) {
-		if (ft.features.length === 0) continue;
-		options[ft.name] = ft.features.map((f) => ({
-			value: `${ft.name}/${f}`,
-			label: f
-		}));
-	}
-	if (contents.files.length > 0) options["files"] = contents.files.map((f) => ({
-		value: f,
-		label: f
-	}));
-	if (Object.keys(options).length === 0) return void 0;
-	const all = Object.values(options).flatMap((o) => o.map((x) => x.value));
-	const picked = await p.groupMultiselect({
-		message: `${sourceName}/${domain}: deselect what you don't want`,
-		options,
-		initialValues: all,
-		required: true
-	});
-	cancelled(picked);
-	return buildInclude(contents, new Set(picked));
+	return result;
 }
 async function initCommand(cwd, opts) {
 	const repoRoot = cwd ?? findRepoRoot();
@@ -1721,24 +1920,8 @@ async function initCommand(cwd, opts) {
 	const tools = await promptTools();
 	const sources = await promptSources(repoRoot);
 	await fetchSources(repoRoot, sources);
-	const pickedDomains = await promptDomains(repoRoot, sources);
-	const everything = await p.confirm({
-		message: "Sync everything inside the selected domains? (No = pick individual skills, agents, files…)",
-		initialValue: true
-	});
-	cancelled(everything);
-	const toolNames = tools.map((t) => t.name);
-	for (const source of sources) {
-		const domains = pickedDomains.get(source.name) ?? [];
-		source.domains = [];
-		for (const domain of domains) {
-			const include = everything ? void 0 : await promptInclude(resolveSourcePath(repoRoot, source), source.name, domain, toolNames);
-			source.domains.push(include ? {
-				name: domain,
-				include
-			} : { name: domain });
-		}
-	}
+	const picked = await promptSelection(repoRoot, sources, tools.map((t) => t.name));
+	for (const source of sources) source.domains = picked.get(source.name) ?? [];
 	const activeSources = sources.filter((s) => (s.domains?.length ?? 0) > 0);
 	for (const s of sources) if (!activeSources.includes(s)) p.log.warn(`${s.name}: no domains selected — source dropped from config.`);
 	await saveConfig(repoRoot, {

package/dist/index.mjs.map

@@ -1 +1 @@
-{"version":3,"file":"index.mjs","names":["pkg.version"],"sources":["../src/lib/config.ts","../src/lib/git.ts","../src/lib/fs.ts","../src/lib/sources.ts","../src/lib/manifest.ts","../package.json","../src/lib/version.ts","../src/lib/migrations/index.ts","../src/lib/sync.ts","../src/commands/sync.ts","../src/commands/init.ts","../src/commands/opt-out.ts","../src/index.ts"],"sourcesContent":["import { readFile, writeFile, access, mkdir, rm } from 'node:fs/promises';\nimport { join, isAbsolute } from 'node:path';\nimport yaml from 'js-yaml';\nimport { z } from 'zod';\n\n// ---------------------------------------------------------------------------\n// Zod Schemas\n// ---------------------------------------------------------------------------\n\nconst SAFE_NAME_RE = /^[A-Za-z0-9._-]+$/;\n\nconst safeName = z\n  .string()\n  .min(1)\n  .refine((v) => SAFE_NAME_RE.test(v) && v !== '.' && v !== '..', {\n    message: 'Only [A-Za-z0-9._-] characters allowed, cannot be . or ..',\n  });\n\nconst safeRelativeFolder = z\n  .string()\n  .min(1)\n  .refine(\n    (value) => {\n      if (isAbsolute(value) || value.includes('\\0')) return false;\n      const segments = value.split(/[\\\\/]/).filter((s) => s.length > 0);\n      if (segments.length === 0) return false;\n      return segments.every(\n        (seg) => seg !== '..' && seg !== '.' && /^\\.?[A-Za-z0-9._-]+$/.test(seg)\n      );\n    },\n    { message: 'Must be a relative path using only [A-Za-z0-9._-]' }\n  );\n\nconst toolConfigSchema = z.object({\n  name: safeName.refine((v) => !v.includes('--'), {\n    message: \"Must not contain '--' (reserved for tool-prefix routing)\",\n  }),\n  folder: safeRelativeFolder,\n});\n\nconst sourceConfigSchema = z.object({\n  name: safeName,\n  source: z.string().min(1).refine((v) => !v.startsWith('-'), {\n    message: \"Must not start with '-'\",\n  }),\n  branch: z\n    .string()\n    .refine((v) => /^[A-Za-z0-9._/-]+$/.test(v) && !v.startsWith('-'), {\n      message: \"Must match [A-Za-z0-9._/-] and not start with '-'\",\n    })\n    .optional(),\n});\n\n/**\n * A path inside a domain that should be synced. One or two segments:\n *   `skills`            → the whole feature type\n *   `skills/deploy`     → a single feature (folder or file)\n *   `AGENTS.md`         → a flat file at the domain root\n */\nconst includePath = z\n  .string()\n  .min(1)\n  .refine(\n    (v) => {\n      const segs = v.split('/');\n      return (\n        segs.length <= 2 &&\n        segs.every((seg) => SAFE_NAME_RE.test(seg) && seg !== '.' && seg !== '..')\n      );\n    },\n    { message: 'Must be <feature-type>, <feature-type>/<feature> or <file> using [A-Za-z0-9._-]' }\n  );\n\nconst domainObjectSchema = z.object({\n  name: safeName,\n  /** Paths to sync from this domain. Omitted = everything. */\n  include: z.array(includePath).optional(),\n});\n\n/** Domains are written as objects; a bare string (`- shared`) is accepted as shorthand. */\nconst domainConfigSchema = z.union([\n  safeName.transform((name): { name: string; include?: string[] } => ({ name })),\n  domainObjectSchema,\n]);\n\nconst bridgeConfigSchema = z\n  .object({\n    version: z.string().optional(),\n    /**\n     * Legacy (< 0.14): domains applied to every source. Still honored as the\n     * fallback for sources without their own `domains`.\n     */\n    domains: z.array(safeName).optional(),\n    tools: z.array(toolConfigSchema).min(1, \"'tools' must be a non-empty array\"),\n    sources: z\n      .array(sourceConfigSchema.extend({ domains: z.array(domainConfigSchema).optional() }))\n      .min(1, \"'sources' must be a non-empty array\"),\n  })\n  .superRefine((data, ctx) => {\n    data.sources.forEach((s, i) => {\n      const domains = s.domains ?? data.domains;\n      if (!domains || domains.length === 0) {\n        ctx.addIssue({\n          code: z.ZodIssueCode.custom,\n          message: `Source '${s.name}' has no domains (set 'sources[].domains' or top-level 'domains')`,\n          path: ['sources', i, 'domains'],\n        });\n      }\n      const seen = new Set<string>();\n      for (const d of s.domains ?? []) {\n        if (seen.has(d.name)) {\n          ctx.addIssue({\n            code: z.ZodIssueCode.custom,\n            message: `Duplicate domain '${d.name}' in source '${s.name}'`,\n            path: ['sources', i, 'domains'],\n          });\n        }\n        seen.add(d.name);\n      }\n    });\n\n    // Check unique tool names\n    const toolNames = new Set<string>();\n    const toolFolders = new Set<string>();\n    data.tools.forEach((t, i) => {\n      if (toolNames.has(t.name)) {\n        ctx.addIssue({\n          code: z.ZodIssueCode.custom,\n          message: `Duplicate tool name: '${t.name}'`,\n          path: ['tools', i, 'name'],\n        });\n      }\n      toolNames.add(t.name);\n      if (toolFolders.has(t.folder)) {\n        ctx.addIssue({\n          code: z.ZodIssueCode.custom,\n          message: `Duplicate tool folder: '${t.folder}'`,\n          path: ['tools', i, 'folder'],\n        });\n      }\n      toolFolders.add(t.folder);\n    });\n\n    // Check unique source names and branch validity\n    const sourceNames = new Set<string>();\n    data.sources.forEach((s, i) => {\n      if (sourceNames.has(s.name)) {\n        ctx.addIssue({\n          code: z.ZodIssueCode.custom,\n          message: `Duplicate source name: '${s.name}'`,\n          path: ['sources', i, 'name'],\n        });\n      }\n      sourceNames.add(s.name);\n\n      const isRemote =\n        s.source.startsWith('https://') ||\n        s.source.startsWith('http://') ||\n        s.source.startsWith('file://') ||\n        /^[\\w.-]+@[\\w.-]+:/.test(s.source);\n\n      if (s.branch && !isRemote) {\n        ctx.addIssue({\n          code: z.ZodIssueCode.custom,\n          message: \"'branch' is only valid for remote sources\",\n          path: ['sources', i, 'branch'],\n        });\n      }\n      if (!isRemote && !isAbsolute(s.source)) {\n        ctx.addIssue({\n          code: z.ZodIssueCode.custom,\n          message: 'Local source paths must be absolute',\n          path: ['sources', i, 'source'],\n        });\n      }\n    });\n  });\n\n// ---------------------------------------------------------------------------\n// Types (inferred from Zod schemas)\n// ---------------------------------------------------------------------------\n\nexport type SourceType = 'git-https' | 'git-ssh' | 'local';\nexport type ToolConfig = z.infer<typeof toolConfigSchema>;\nexport type DomainConfig = z.infer<typeof domainObjectSchema>;\nexport type SourceConfig = z.infer<typeof sourceConfigSchema> & { domains?: DomainConfig[] };\nexport type BridgeConfig = z.infer<typeof bridgeConfigSchema>;\n\n// ---------------------------------------------------------------------------\n// Domain resolution & include filtering\n// ---------------------------------------------------------------------------\n\n/**\n * Domains to scan for a source: its own `domains`, falling back to the legacy\n * top-level `domains` list (everything included).\n */\nexport function sourceDomains(config: BridgeConfig, source: SourceConfig): DomainConfig[] {\n  if (source.domains) return source.domains;\n  return (config.domains ?? []).map((name) => ({ name }));\n}\n\n/**\n * Whether `relPath` (relative to the domain root, e.g. `skills`,\n * `skills/deploy`, `AGENTS.md`) is selected by the domain's `include` list.\n * No `include` means everything is selected.\n */\nexport function isIncluded(domain: DomainConfig, relPath: string): boolean {\n  const inc = domain.include;\n  if (!inc) return true;\n  return inc.some((entry) => entry === relPath || relPath.startsWith(entry + '/') || entry.startsWith(relPath + '/'));\n}\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\nexport const BRIDGE_DIR = '.agent-bridge';\nexport const CONFIG_FILENAME = 'config.yml';\n\n/**\n * Tombstone written by `opt-out`. It lives inside `.agent-bridge/` so it's\n * gitignored by default (the directory's `.gitignore` ignores everything but\n * `config.yml`), keeping opt-out local to a machine. `init`/`sync` honor it so\n * a `postinstall` guard doesn't silently reinstall Agent Bridge on the next\n * `npm install`. Force-add it (`git add -f`) to commit a repo-wide opt-out.\n */\nexport const OPT_OUT_MARKER = join(BRIDGE_DIR, 'optout');\n\n// ---------------------------------------------------------------------------\n// Source type detection\n// ---------------------------------------------------------------------------\n\nexport function detectSourceType(source: string): SourceType {\n  if (\n    source.startsWith('https://') ||\n    source.startsWith('http://') ||\n    source.startsWith('file://')\n  ) {\n    return 'git-https';\n  }\n  if (/^[\\w.-]+@[\\w.-]+:/.test(source)) {\n    return 'git-ssh';\n  }\n  return 'local';\n}\n\nexport function isRemoteSource(source: string): boolean {\n  const type = detectSourceType(source);\n  return type === 'git-https' || type === 'git-ssh';\n}\n\n// ---------------------------------------------------------------------------\n// Paths\n// ---------------------------------------------------------------------------\n\nexport function bridgeDir(repoRoot: string): string {\n  return join(repoRoot, BRIDGE_DIR);\n}\n\nexport function configPath(repoRoot: string): string {\n  return join(repoRoot, BRIDGE_DIR, CONFIG_FILENAME);\n}\n\nexport function sourceDir(repoRoot: string, sourceName: string): string {\n  return join(repoRoot, BRIDGE_DIR, sourceName);\n}\n\nexport function optOutMarkerPath(repoRoot: string): string {\n  return join(repoRoot, OPT_OUT_MARKER);\n}\n\n/** Whether an opt-out tombstone is present at the repo root. */\nexport async function isOptedOut(repoRoot: string): Promise<boolean> {\n  try {\n    await access(optOutMarkerPath(repoRoot));\n    return true;\n  } catch {\n    return false;\n  }\n}\n\n/**\n * Write the opt-out tombstone inside `.agent-bridge/`. Recreates the directory\n * (opt-out deletes it) and its `.gitignore` so the marker is ignored by default.\n */\nexport async function writeOptOutMarker(repoRoot: string): Promise<void> {\n  const dir = bridgeDir(repoRoot);\n  await mkdir(dir, { recursive: true });\n  // Same ignore rules init/sync write: ignore everything but the config.\n  await writeFile(\n    join(dir, '.gitignore'),\n    ['# Ignore cloned sources', '*', '!config.yml', '!.gitignore'].join('\\n') + '\\n',\n    'utf-8'\n  );\n  await writeFile(\n    optOutMarkerPath(repoRoot),\n    '# Agent Bridge opt-out marker. Remove this file (or run `agent-bridge init --force`) to re-enable.\\n',\n    'utf-8'\n  );\n}\n\n/** Remove the opt-out tombstone if present (idempotent). */\nexport async function removeOptOutMarker(repoRoot: string): Promise<void> {\n  await rm(optOutMarkerPath(repoRoot), { force: true });\n}\n\n// ---------------------------------------------------------------------------\n// Config I/O\n// ---------------------------------------------------------------------------\n\nexport async function configExists(repoRoot: string): Promise<boolean> {\n  try {\n    await access(configPath(repoRoot));\n    return true;\n  } catch {\n    return false;\n  }\n}\n\nexport async function loadConfig(repoRoot: string): Promise<BridgeConfig> {\n  const raw = await readFile(configPath(repoRoot), 'utf-8');\n  const data = yaml.load(raw);\n\n  const result = bridgeConfigSchema.safeParse(data);\n  if (!result.success) {\n    const errors = result.error.issues.map(\n      (i) => `${i.path.join('.')}: ${i.message}`\n    );\n    throw new Error(`Invalid config: ${errors.join('; ')}`);\n  }\n\n  return result.data;\n}\n\nexport async function saveConfig(\n  repoRoot: string,\n  config: BridgeConfig\n): Promise<void> {\n  const dir = bridgeDir(repoRoot);\n  await mkdir(dir, { recursive: true });\n  const content = yaml.dump(config, { lineWidth: -1, noRefs: true, skipInvalid: true });\n  await writeFile(configPath(repoRoot), content, 'utf-8');\n}\n\n// ---------------------------------------------------------------------------\n// Validation (legacy interface for tests)\n// ---------------------------------------------------------------------------\n\nexport interface ConfigValidationResult {\n  ok: boolean;\n  errors: string[];\n}\n\nexport function validateConfig(config: unknown): ConfigValidationResult {\n  const result = bridgeConfigSchema.safeParse(config);\n  if (result.success) {\n    return { ok: true, errors: [] };\n  }\n  const errors = result.error.issues.map(\n    (i) => `${i.path.join('.')}: ${i.message}`\n  );\n  return { ok: false, errors };\n}\n","import { execSync } from 'node:child_process';\nimport { mkdir, writeFile, chmod, readFile, access } from 'node:fs/promises';\nimport { join } from 'node:path';\n\nexport function findRepoRoot(): string {\n  try {\n    return execSync('git rev-parse --show-toplevel', {\n      encoding: 'utf-8',\n      stdio: 'pipe',\n    }).trim();\n  } catch {\n    return process.cwd();\n  }\n}\n\n/**\n * Check if a directory is inside a Git repository.\n */\nexport function isInGitRepo(cwd?: string): boolean {\n  try {\n    execSync('git rev-parse --is-inside-work-tree', {\n      encoding: 'utf-8',\n      stdio: 'pipe',\n      cwd,\n    });\n    return true;\n  } catch {\n    return false;\n  }\n}\n\n/**\n * Get the path to the .git/hooks directory.\n */\nexport function getGitHooksDir(repoRoot: string): string {\n  return join(repoRoot, '.git', 'hooks');\n}\n\n/**\n * The hook names that Agent Bridge will install.\n */\nexport const AGENT_BRIDGE_HOOKS = ['post-checkout', 'post-merge'] as const;\nexport type AgentBridgeHook = (typeof AGENT_BRIDGE_HOOKS)[number];\n\n/**\n * Marker comment to identify Agent Bridge hooks.\n */\nconst HOOK_MARKER = '# agent-bridge-hook';\n\n/**\n * Generate the hook script content.\n * Runs sync in the background, logging to `.agent-bridge/hook.log`\n * (trimmed to the last ~200 lines) so failures are diagnosable.\n */\nexport function generateHookScript(): string {\n  return `#!/bin/sh\n${HOOK_MARKER}\n# This hook was installed by Agent Bridge.\n# It runs 'agent-bridge sync' in the background to keep your AI agent\n# configurations up to date.\n\nREPO_ROOT=\"$(git rev-parse --show-toplevel 2>/dev/null)\"\nLOG_DIR=\"\\${REPO_ROOT:-.}/.agent-bridge\"\nLOG_FILE=\"\\${LOG_DIR}/hook.log\"\n\nmkdir -p \"\\$LOG_DIR\" 2>/dev/null\n\n(\n  # Wait a moment for git to finish\n  sleep 1\n\n  {\n    echo \"--- $(date '+%Y-%m-%dT%H:%M:%S%z') agent-bridge hook ---\"\n    if command -v agent-bridge >/dev/null 2>&1; then\n      agent-bridge sync\n    elif command -v npx >/dev/null 2>&1; then\n      npx @sofatutor/agent-bridge sync\n    else\n      echo \"agent-bridge not found (install globally or ensure npx is available)\"\n    fi\n  } >>\"\\$LOG_FILE\" 2>&1\n\n  # Keep the log from growing without bound.\n  if [ -f \"\\$LOG_FILE\" ]; then\n    tail -n 200 \"\\$LOG_FILE\" >\"\\$LOG_FILE.tmp\" && mv \"\\$LOG_FILE.tmp\" \"\\$LOG_FILE\"\n  fi\n) </dev/null >/dev/null 2>&1 &\n`;\n}\n\n/**\n * Check if a hook file contains the Agent Bridge marker.\n */\nexport async function hasAgentBridgeHook(hookPath: string): Promise<boolean> {\n  try {\n    const content = await readFile(hookPath, 'utf-8');\n    return content.includes(HOOK_MARKER);\n  } catch {\n    return false;\n  }\n}\n\n/**\n * Check if a hook file exists.\n */\nasync function hookExists(hookPath: string): Promise<boolean> {\n  try {\n    await access(hookPath);\n    return true;\n  } catch {\n    return false;\n  }\n}\n\nexport interface InstallHooksResult {\n  installed: AgentBridgeHook[];\n  skipped: AgentBridgeHook[];\n  errors: Array<{ hook: AgentBridgeHook; error: string }>;\n}\n\n/**\n * Install Agent Bridge git hooks in the repository.\n * \n * @param repoRoot - The root of the git repository\n * @param force - If true, overwrite existing hooks that don't have the marker\n * @returns Result with installed, skipped, and errored hooks\n */\nexport async function installGitHooks(\n  repoRoot: string,\n  force = false\n): Promise<InstallHooksResult> {\n  const result: InstallHooksResult = {\n    installed: [],\n    skipped: [],\n    errors: [],\n  };\n\n  if (!isInGitRepo(repoRoot)) {\n    for (const hook of AGENT_BRIDGE_HOOKS) {\n      result.errors.push({ hook, error: 'Not a git repository' });\n    }\n    return result;\n  }\n\n  const hooksDir = getGitHooksDir(repoRoot);\n\n  // Ensure hooks directory exists\n  try {\n    await mkdir(hooksDir, { recursive: true });\n  } catch (err) {\n    for (const hook of AGENT_BRIDGE_HOOKS) {\n      result.errors.push({ hook, error: `Failed to create hooks directory: ${err}` });\n    }\n    return result;\n  }\n\n  const hookContent = generateHookScript();\n\n  for (const hookName of AGENT_BRIDGE_HOOKS) {\n    const hookPath = join(hooksDir, hookName);\n\n    try {\n      const exists = await hookExists(hookPath);\n      \n      if (exists) {\n        const hasMarker = await hasAgentBridgeHook(hookPath);\n        \n        if (hasMarker) {\n          // Already installed, update it\n          await writeFile(hookPath, hookContent, 'utf-8');\n          await chmod(hookPath, 0o755);\n          result.installed.push(hookName);\n        } else if (force) {\n          // Force overwrite\n          await writeFile(hookPath, hookContent, 'utf-8');\n          await chmod(hookPath, 0o755);\n          result.installed.push(hookName);\n        } else {\n          // Skip - existing hook without marker\n          result.skipped.push(hookName);\n        }\n      } else {\n        // Create new hook\n        await writeFile(hookPath, hookContent, 'utf-8');\n        await chmod(hookPath, 0o755);\n        result.installed.push(hookName);\n      }\n    } catch (err) {\n      result.errors.push({ hook: hookName, error: String(err) });\n    }\n  }\n\n  return result;\n}\n\n/**\n * Rewrite hooks that Agent Bridge installed earlier with the current script.\n * Hooks we did not install (no marker) and missing hooks are left alone.\n */\nexport async function refreshGitHooks(repoRoot: string): Promise<AgentBridgeHook[]> {\n  const refreshed: AgentBridgeHook[] = [];\n  if (!isInGitRepo(repoRoot)) return refreshed;\n\n  const hooksDir = getGitHooksDir(repoRoot);\n  for (const hookName of AGENT_BRIDGE_HOOKS) {\n    const hookPath = join(hooksDir, hookName);\n    if (!(await hasAgentBridgeHook(hookPath))) continue;\n    await writeFile(hookPath, generateHookScript(), 'utf-8');\n    await chmod(hookPath, 0o755);\n    refreshed.push(hookName);\n  }\n  return refreshed;\n}\n\n/**\n * Remove Agent Bridge git hooks from the repository.\n * Only removes hooks that have the Agent Bridge marker.\n */\nexport async function removeGitHooks(repoRoot: string): Promise<AgentBridgeHook[]> {\n  const removed: AgentBridgeHook[] = [];\n\n  if (!isInGitRepo(repoRoot)) {\n    return removed;\n  }\n\n  const hooksDir = getGitHooksDir(repoRoot);\n\n  for (const hookName of AGENT_BRIDGE_HOOKS) {\n    const hookPath = join(hooksDir, hookName);\n    \n    try {\n      if (await hasAgentBridgeHook(hookPath)) {\n        const { unlink } = await import('node:fs/promises');\n        await unlink(hookPath);\n        removed.push(hookName);\n      }\n    } catch {\n      // Ignore errors\n    }\n  }\n\n  return removed;\n}\n","import { readdir, copyFile, stat } from 'node:fs/promises';\nimport { join, dirname } from 'node:path';\nimport fsExtra from 'fs-extra';\n\nconst { pathExists, remove, outputFile, readFile: fsReadFile, ensureDir } = fsExtra;\n\n/** Name of the marker file placed inside every synced feature folder. */\nexport const MARKER_FILENAME = '.agentbridge';\n\nexport async function dirExists(p: string): Promise<boolean> {\n  try {\n    const s = await stat(p);\n    return s.isDirectory();\n  } catch {\n    return false;\n  }\n}\n\nexport async function fileExists(p: string): Promise<boolean> {\n  return pathExists(p);\n}\n\nexport async function listFilesRecursive(dir: string): Promise<string[]> {\n  const files: string[] = [];\n  const entries = await readdir(dir, { withFileTypes: true });\n  for (const entry of entries) {\n    // Skip symlinks entirely: never follow them out of the source tree,\n    // and don't attempt to replicate them (keeps the destination simple\n    // and avoids symlink-escape vulnerabilities).\n    if (entry.isSymbolicLink()) continue;\n    // Skip Agent Bridge marker files that may exist in source repos.\n    if (entry.name === MARKER_FILENAME) continue;\n    if (entry.isDirectory()) {\n      const subFiles = await listFilesRecursive(join(dir, entry.name));\n      files.push(...subFiles.map((f) => join(entry.name, f)));\n    } else if (entry.isFile()) {\n      files.push(entry.name);\n    }\n  }\n  return files;\n}\n\n/**\n * Copy all files from `srcDir` into `destDir`, preserving nested structure.\n * Overwrites existing files. Creates directories as needed.\n */\nexport async function copyDirContents(srcDir: string, destDir: string): Promise<void> {\n  const files = await listFilesRecursive(srcDir);\n  for (const relFile of files) {\n    const srcFile = join(srcDir, relFile);\n    const destFile = join(destDir, relFile);\n    await ensureDir(dirname(destFile));\n    await copyFile(srcFile, destFile);\n  }\n}\n\n/**\n * Write the `.agentbridge` marker file into a feature folder.\n */\nexport async function writeMarker(featureDir: string): Promise<void> {\n  await outputFile(join(featureDir, MARKER_FILENAME), '');\n}\n\n/**\n * Check whether a directory contains the `.agentbridge` marker.\n */\nexport async function hasMarker(featureDir: string): Promise<boolean> {\n  return pathExists(join(featureDir, MARKER_FILENAME));\n}\n\n/**\n * Remove a directory and all its contents.\n */\nexport async function removeDir(dir: string): Promise<void> {\n  await remove(dir);\n}\n\n/**\n * Remove a single file.\n */\nexport async function removeFile(filePath: string): Promise<void> {\n  await remove(filePath);\n}\n\n// ---------------------------------------------------------------------------\n// Manifest helpers (single .agentbridge per feature-type directory)\n// ---------------------------------------------------------------------------\n\n/**\n * Read the manifest file in a directory. Returns list of managed entries.\n * Entries ending with '/' are folders, others are files.\n */\nexport async function readManifest(dir: string): Promise<string[]> {\n  const manifestPath = join(dir, MARKER_FILENAME);\n  try {\n    const content = await fsReadFile(manifestPath, 'utf-8');\n    return content.split('\\n').filter((line) => line.trim().length > 0);\n  } catch {\n    return [];\n  }\n}\n\n/**\n * Check if an entry in the manifest is a folder (ends with /).\n */\nexport function isManifestFolder(entry: string): boolean {\n  return entry.endsWith('/');\n}\n\n/**\n * Get the base name from a manifest entry (strips trailing / for folders).\n */\nexport function manifestEntryName(entry: string): string {\n  return entry.endsWith('/') ? entry.slice(0, -1) : entry;\n}\n\n/**\n * Write a manifest file listing managed entries.\n */\nexport async function writeManifest(dir: string, entries: string[]): Promise<void> {\n  const manifestPath = join(dir, MARKER_FILENAME);\n  const content = entries.length > 0 ? entries.join('\\n') + '\\n' : '';\n  await outputFile(manifestPath, content);\n}\n\n/**\n * Add an entry to the manifest. Creates manifest if it doesn't exist.\n * Use trailing '/' for folders.\n */\nexport async function addToManifest(dir: string, entry: string): Promise<void> {\n  const existing = await readManifest(dir);\n  if (!existing.includes(entry)) {\n    existing.push(entry);\n    await writeManifest(dir, existing);\n  }\n}\n\n/**\n * Remove an entry from the manifest.\n * Deletes the manifest file entirely if it becomes empty.\n */\nexport async function removeFromManifest(dir: string, entry: string): Promise<void> {\n  const existing = await readManifest(dir);\n  const updated = existing.filter((e) => e !== entry);\n  if (updated.length !== existing.length) {\n    if (updated.length === 0) {\n      // Remove manifest file when empty\n      await remove(join(dir, MARKER_FILENAME));\n    } else {\n      await writeManifest(dir, updated);\n    }\n  }\n}\n\n/**\n * Check if an entry is tracked in the manifest.\n */\nexport async function isInManifest(dir: string, entry: string): Promise<boolean> {\n  const entries = await readManifest(dir);\n  return entries.includes(entry);\n}\n","import { execFileSync } from 'node:child_process';\nimport { mkdir, readdir, rm, writeFile, access } from 'node:fs/promises';\nimport { join, isAbsolute, resolve } from 'node:path';\nimport {\n  type SourceConfig,\n  type BridgeConfig,\n  bridgeDir,\n  sourceDir,\n  isRemoteSource,\n} from './config.js';\nimport { dirExists } from './fs.js';\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/**\n * Marker file written inside every directory Agent Bridge manages under\n * `.agent-bridge/`. Used to gate destructive cleanup so we never delete\n * user-placed content.\n */\nconst SOURCE_MARKER = '.agent-bridge-managed';\n\nfunction git(args: string[], cwd?: string): string {\n  return execFileSync('git', args, {\n    cwd,\n    encoding: 'utf-8',\n    stdio: 'pipe',\n  }).trim();\n}\n\n/**\n * Branch names must not contain shell metacharacters or leading dashes\n * (which could be mistaken for git flags). Conservative but safe.\n */\nfunction assertSafeBranch(branch: string, sourceName: string): void {\n  if (!/^[A-Za-z0-9._/-]+$/.test(branch) || branch.startsWith('-')) {\n    throw new Error(\n      `Source '${sourceName}': invalid branch name '${branch}'. ` +\n        `Branch must match [A-Za-z0-9._/-]+ and not start with '-'.`\n    );\n  }\n}\n\n/**\n * Reject source URLs that begin with '-' to prevent them being interpreted\n * as CLI flags by git.\n */\nfunction assertSafeSourceUrl(source: string, sourceName: string): void {\n  if (source.startsWith('-')) {\n    throw new Error(\n      `Source '${sourceName}': URL must not start with '-' (got '${source}').`\n    );\n  }\n}\n\nasync function writeSourceMarker(dest: string): Promise<void> {\n  await writeFile(\n    join(dest, SOURCE_MARKER),\n    'This directory is managed by agent-bridge. Do not edit manually.\\n',\n    'utf-8'\n  );\n}\n\nasync function hasSourceMarker(dir: string): Promise<boolean> {\n  try {\n    await access(join(dir, SOURCE_MARKER));\n    return true;\n  } catch {\n    return false;\n  }\n}\n\n// ---------------------------------------------------------------------------\n// Git operations for a single remote source\n// ---------------------------------------------------------------------------\n\nexport async function cloneSource(\n  repoRoot: string,\n  source: SourceConfig\n): Promise<void> {\n  assertSafeSourceUrl(source.source, source.name);\n  if (source.branch) assertSafeBranch(source.branch, source.name);\n\n  const dest = sourceDir(repoRoot, source.name);\n\n  await mkdir(bridgeDir(repoRoot), { recursive: true });\n\n  const args = ['clone', '--depth', '1'];\n  if (source.branch) {\n    args.push('--single-branch', '--branch', source.branch);\n  }\n  // '--' terminates option parsing so the URL / dest can never be read as flags.\n  args.push('--', source.source, dest);\n\n  execFileSync('git', args, { stdio: 'pipe' });\n\n  await writeSourceMarker(dest);\n}\n\nexport async function fetchSource(\n  repoRoot: string,\n  source: SourceConfig\n): Promise<void> {\n  assertSafeSourceUrl(source.source, source.name);\n  if (source.branch) assertSafeBranch(source.branch, source.name);\n\n  const dest = sourceDir(repoRoot, source.name);\n\n  git(['fetch', '--prune', 'origin'], dest);\n\n  if (source.branch) {\n    const currentBranch = git(['rev-parse', '--abbrev-ref', 'HEAD'], dest);\n    if (currentBranch !== source.branch) {\n      // Branch changed in config — ensure we have the ref then check it out.\n      // A shallow --single-branch clone only has one branch, so fetch the\n      // new branch explicitly before checkout.\n      try {\n        git(['fetch', '--depth', '1', 'origin', source.branch], dest);\n      } catch {\n        // If fetch fails, let checkout surface the real error.\n      }\n      git(['checkout', source.branch], dest);\n    }\n  }\n\n  try {\n    git(['pull', '--ff-only'], dest);\n  } catch {\n    // pull may fail for tags or detached HEAD — that's okay after fetch\n  }\n\n  // Refresh marker (in case the directory was restored from backup without it).\n  await writeSourceMarker(dest);\n}\n\n// ---------------------------------------------------------------------------\n// Local source resolution\n// ---------------------------------------------------------------------------\n\nexport function resolveLocalSource(\n  repoRoot: string,\n  source: SourceConfig\n): string {\n  const raw = source.source;\n  if (isAbsolute(raw)) return raw;\n  return resolve(repoRoot, raw);\n}\n\n// ---------------------------------------------------------------------------\n// Resolve the effective filesystem path for a source\n// ---------------------------------------------------------------------------\n\nexport function resolveSourcePath(\n  repoRoot: string,\n  source: SourceConfig\n): string {\n  if (isRemoteSource(source.source)) {\n    return sourceDir(repoRoot, source.name);\n  }\n  return resolveLocalSource(repoRoot, source);\n}\n\n// ---------------------------------------------------------------------------\n// Sync all sources\n// ---------------------------------------------------------------------------\n\nexport interface SourceSyncResult {\n  name: string;\n  action: 'cloned' | 'updated' | 'local';\n  error?: string;\n}\n\nexport async function syncSource(\n  repoRoot: string,\n  source: SourceConfig\n): Promise<SourceSyncResult> {\n  if (!isRemoteSource(source.source)) {\n    const resolved = resolveLocalSource(repoRoot, source);\n    if (!(await dirExists(resolved))) {\n      return {\n        name: source.name,\n        action: 'local',\n        error: `Local source path does not exist: ${resolved}\\n  Update the path in .agent-bridge/config.yml or run \"agent-bridge init\" to reconfigure.`,\n      };\n    }\n    return { name: source.name, action: 'local' };\n  }\n\n  const dest = sourceDir(repoRoot, source.name);\n\n  if (await dirExists(dest)) {\n    try {\n      await fetchSource(repoRoot, source);\n      return { name: source.name, action: 'updated' };\n    } catch (err) {\n      return {\n        name: source.name,\n        action: 'updated',\n        error: err instanceof Error ? err.message : String(err),\n      };\n    }\n  }\n\n  try {\n    await cloneSource(repoRoot, source);\n    return { name: source.name, action: 'cloned' };\n  } catch (err) {\n    return {\n      name: source.name,\n      action: 'cloned',\n      error: err instanceof Error ? err.message : String(err),\n    };\n  }\n}\n\nexport async function syncAllSources(\n  repoRoot: string,\n  config: BridgeConfig\n): Promise<SourceSyncResult[]> {\n  await ensureBridgeGitignore(repoRoot);\n  return Promise.all(config.sources.map((source) => syncSource(repoRoot, source)));\n}\n\n// ---------------------------------------------------------------------------\n// Ensure .gitignore in .agent-bridge/\n// ---------------------------------------------------------------------------\n\n/**\n * Write a `.gitignore` inside `.agent-bridge/` that ignores cloned source\n * directories (which are nested git repos) while keeping `config.yml` tracked.\n * Without this, git sees the nested repos as gitlinks/submodules and creates\n * phantom dirty-state changes.\n */\nexport async function ensureBridgeGitignore(repoRoot: string): Promise<void> {\n  const bridge = bridgeDir(repoRoot);\n  await mkdir(bridge, { recursive: true });\n\n  const gitignorePath = join(bridge, '.gitignore');\n  const lines = ['# Ignore cloned sources', '*', '!config.yml', '!.gitignore'];\n  const content = lines.join('\\n') + '\\n';\n\n  await writeFile(gitignorePath, content, 'utf-8');\n}\n\n// ---------------------------------------------------------------------------\n// Remove sources that no longer exist in config\n// ---------------------------------------------------------------------------\n\n/**\n * Remove cloned source directories under `.agent-bridge/` that are no longer\n * referenced in config. Only directories carrying the Agent Bridge marker\n * file are eligible for deletion — user-placed content is always preserved.\n *\n * For backwards compatibility with clones created before the marker existed,\n * directories containing a `.git` folder are also treated as stale.\n */\nexport async function removeStaleSourceDirs(\n  repoRoot: string,\n  config: BridgeConfig\n): Promise<string[]> {\n  const bridge = bridgeDir(repoRoot);\n  if (!(await dirExists(bridge))) return [];\n\n  const entries = await readdir(bridge, { withFileTypes: true });\n\n  const configuredNames = new Set(\n    config.sources.filter((s) => isRemoteSource(s.source)).map((s) => s.name)\n  );\n\n  const removed: string[] = [];\n  for (const entry of entries) {\n    if (!entry.isDirectory()) continue;\n    if (configuredNames.has(entry.name)) continue;\n\n    const candidate = join(bridge, entry.name);\n\n    if (\n      (await hasSourceMarker(candidate)) ||\n      (await dirExists(join(candidate, '.git')))\n    ) {\n      await rm(candidate, { recursive: true, force: true });\n      removed.push(entry.name);\n    }\n  }\n\n  return removed;\n}\n","import { readdir } from 'node:fs/promises';\nimport { join } from 'node:path';\nimport { type BridgeConfig, type DomainConfig, sourceDomains, isIncluded } from './config.js';\nimport { dirExists, fileExists } from './fs.js';\nimport { resolveSourcePath } from './sources.js';\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\nconst TOOL_PREFIX_SEPARATOR = '--';\n\nexport interface Feature {\n  name: string;\n  /** Raw feature-type directory name (may contain tool prefix) */\n  type: string;\n  /** Display type with tool prefix stripped (used for destination dir) */\n  displayType: string;\n  source: string;\n  domain: string;\n  /** Absolute path to the feature (directory or file) */\n  absolutePath: string;\n  /** Tool prefix if present (e.g. \"cursor\" from \"cursor--instructions\") */\n  toolPrefix?: string;\n  /** True if feature is a single file, false if a directory */\n  isFile: boolean;\n}\n\nexport interface DuplicateConflict {\n  name: string;\n  type: string;\n  paths: string[];\n}\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\nexport { dirExists } from './fs.js';\n\n\nexport function parseToolPrefix(name: string): {\n  toolPrefix?: string;\n  baseName: string;\n} {\n  const idx = name.indexOf(TOOL_PREFIX_SEPARATOR);\n  if (idx > 0) {\n    return {\n      toolPrefix: name.substring(0, idx),\n      baseName: name.substring(idx + TOOL_PREFIX_SEPARATOR.length),\n    };\n  }\n  return { baseName: name };\n}\n\nexport function featureMatchesTool(\n  feature: Feature,\n  toolName: string\n): boolean {\n  if (!feature.toolPrefix) return true;\n  return feature.toolPrefix === toolName;\n}\n\nexport function featureName(feature: Feature): string {\n  if (feature.toolPrefix) {\n    return parseToolPrefix(feature.name).baseName;\n  }\n  return feature.name;\n}\n\n/** @deprecated Use featureName instead */\n/** @deprecated Use featureName directly */\nexport const syncName = featureName;\n\n// ---------------------------------------------------------------------------\n// Discovery\n// ---------------------------------------------------------------------------\n\n/**\n * Discover all feature types across all sources and domains.\n */\nexport async function discoverFeatureTypes(\n  repoRoot: string,\n  config: BridgeConfig\n): Promise<string[]> {\n  const types = new Set<string>();\n\n  for (const source of config.sources) {\n    const srcPath = resolveSourcePath(repoRoot, source);\n    for (const domain of sourceDomains(config, source)) {\n      const domainDir = join(srcPath, domain.name);\n      if (!(await dirExists(domainDir))) continue;\n\n      const entries = await readdir(domainDir, { withFileTypes: true });\n      for (const entry of entries) {\n        if (entry.isDirectory() && isIncluded(domain, entry.name)) {\n          types.add(entry.name);\n        }\n      }\n    }\n  }\n\n  return [...types].sort();\n}\n\n/**\n * Scan all features across sources × domains × feature types.\n *\n * Structure: `<source-path>/<domain>/<feature-type>/<feature>/` (folder-based)\n *         or `<source-path>/<domain>/<feature-type>/<feature.ext>` (file-based)\n */\nexport async function scanFeatures(\n  repoRoot: string,\n  config: BridgeConfig,\n  featureTypes: string[]\n): Promise<Feature[]> {\n  const features: Feature[] = [];\n\n  for (const source of config.sources) {\n    const srcPath = resolveSourcePath(repoRoot, source);\n\n    for (const domain of sourceDomains(config, source)) {\n      for (const ft of featureTypes) {\n        if (!isIncluded(domain, ft)) continue;\n        const { toolPrefix: typeToolPrefix, baseName: baseType } =\n          parseToolPrefix(ft);\n        const ftDir = join(srcPath, domain.name, ft);\n\n        if (!(await dirExists(ftDir))) continue;\n\n        const entries = await readdir(ftDir, { withFileTypes: true });\n        for (const entry of entries) {\n          const isFile = entry.isFile();\n          const isDir = entry.isDirectory();\n          if (!isFile && !isDir) continue;\n          if (!isIncluded(domain, `${ft}/${entry.name}`)) continue;\n\n          const { toolPrefix: itemToolPrefix } = parseToolPrefix(entry.name);\n          const toolPrefix = itemToolPrefix ?? typeToolPrefix;\n\n          features.push({\n            name: entry.name,\n            type: ft,\n            displayType: baseType,\n            source: source.name,\n            domain: domain.name,\n            absolutePath: join(ftDir, entry.name),\n            toolPrefix,\n            isFile,\n          });\n        }\n      }\n    }\n  }\n\n  return features;\n}\n\n// ---------------------------------------------------------------------------\n// Source browsing (used by `init` to offer domains and their contents)\n// ---------------------------------------------------------------------------\n\n/** Top-level directories of a source that can act as domains. */\nexport async function listDomains(srcPath: string): Promise<string[]> {\n  if (!(await dirExists(srcPath))) return [];\n  const entries = await readdir(srcPath, { withFileTypes: true });\n  return entries\n    .filter((e) => e.isDirectory() && !e.name.startsWith('.') && e.name !== 'node_modules')\n    .map((e) => e.name)\n    .sort();\n}\n\nexport interface DomainContents {\n  /** Feature-type folders and the features inside them. */\n  featureTypes: Array<{ name: string; features: string[] }>;\n  /** Flat files sync would pick up: well-known root files and `<tool>--` files. */\n  files: string[];\n}\n\n/**\n * List what `sync` would consider inside a domain, so the user can pick a\n * subset. `toolNames` filters `<tool>--file` entries to configured tools.\n */\nexport async function listDomainContents(\n  srcPath: string,\n  domain: string,\n  toolNames: Iterable<string>\n): Promise<DomainContents> {\n  const domainDir = join(srcPath, domain);\n  const tools = new Set(toolNames);\n  const result: DomainContents = { featureTypes: [], files: [] };\n  if (!(await dirExists(domainDir))) return result;\n\n  const entries = await readdir(domainDir, { withFileTypes: true });\n  for (const entry of entries) {\n    if (entry.name.startsWith('.')) continue;\n    if (entry.isDirectory()) {\n      const features = (await readdir(join(domainDir, entry.name), { withFileTypes: true }))\n        .filter((f) => (f.isFile() || f.isDirectory()) && !f.name.startsWith('.'))\n        .map((f) => f.name)\n        .sort();\n      result.featureTypes.push({ name: entry.name, features });\n    } else if (entry.isFile()) {\n      const { toolPrefix } = parseToolPrefix(entry.name);\n      if ((ROOT_FILES as readonly string[]).includes(entry.name) || (toolPrefix && tools.has(toolPrefix))) {\n        result.files.push(entry.name);\n      }\n    }\n  }\n  result.featureTypes.sort((a, b) => a.name.localeCompare(b.name));\n  result.files.sort();\n  return result;\n}\n\n/** Type re-export so callers don't need to import config.js just for this. */\nexport type { DomainConfig };\n\n// ---------------------------------------------------------------------------\n// Duplicate detection\n// ---------------------------------------------------------------------------\n\nexport function detectDuplicates(features: Feature[]): DuplicateConflict[] {\n  const byKey = new Map<string, Feature[]>();\n\n  for (const f of features) {\n    const linkName = featureName(f);\n    const key = `${f.displayType}/${linkName}`;\n    const group = byKey.get(key) ?? [];\n    group.push(f);\n    byKey.set(key, group);\n  }\n\n  const conflicts: DuplicateConflict[] = [];\n  for (const [, group] of byKey) {\n    if (group.length > 1) {\n      conflicts.push({\n        name: featureName(group[0]),\n        type: group[0].type,\n        paths: group.map((f) => f.absolutePath),\n      });\n    }\n  }\n\n  return conflicts;\n}\n\n// ---------------------------------------------------------------------------\n// Root file scanning\n// ---------------------------------------------------------------------------\n\n/**\n * Well-known root files that live at the domain root and should be synced to the\n * workspace root. When a source contains `<domain>/AGENTS.md` (etc.), Agent Bridge\n * copies it to the project root.\n */\nexport const ROOT_FILES = ['AGENTS.md', 'CLAUDE.md', 'SYSTEM.md'] as const;\nexport type RootFileName = (typeof ROOT_FILES)[number];\n\nexport interface RootFile {\n  /** The well-known filename (e.g. \"AGENTS.md\") */\n  fileName: RootFileName;\n  /** Source that provides this file */\n  source: string;\n  /** Domain where it was found */\n  domain: string;\n  /** Absolute path to the source file */\n  absolutePath: string;\n}\n\nexport interface RootFileDuplicate {\n  fileName: RootFileName;\n  paths: string[];\n}\n\n/**\n * Scan all sources × domains for well-known root files.\n * Returns one entry per found file.\n */\nexport async function scanRootFiles(\n  repoRoot: string,\n  config: BridgeConfig\n): Promise<RootFile[]> {\n  const found: RootFile[] = [];\n\n  for (const source of config.sources) {\n    const srcPath = resolveSourcePath(repoRoot, source);\n    for (const domain of sourceDomains(config, source)) {\n      for (const fileName of ROOT_FILES) {\n        if (!isIncluded(domain, fileName)) continue;\n        const filePath = join(srcPath, domain.name, fileName);\n        if (await fileExists(filePath)) {\n          found.push({\n            fileName,\n            source: source.name,\n            domain: domain.name,\n            absolutePath: filePath,\n          });\n        }\n      }\n    }\n  }\n\n  return found;\n}\n\n/**\n * Detect duplicate root files (same filename provided by multiple sources/domains).\n */\nexport function detectRootFileDuplicates(\n  rootFiles: RootFile[]\n): RootFileDuplicate[] {\n  const byName = new Map<RootFileName, RootFile[]>();\n  for (const rf of rootFiles) {\n    const group = byName.get(rf.fileName) ?? [];\n    group.push(rf);\n    byName.set(rf.fileName, group);\n  }\n\n  const duplicates: RootFileDuplicate[] = [];\n  for (const [fileName, group] of byName) {\n    if (group.length > 1) {\n      duplicates.push({\n        fileName,\n        paths: group.map((rf) => rf.absolutePath),\n      });\n    }\n  }\n\n  return duplicates;\n}\n\n// ---------------------------------------------------------------------------\n// Tool root file scanning (tool-prefixed flat files at domain level)\n// ---------------------------------------------------------------------------\n\nexport interface ToolRootEntry {\n  /** The tool name this entry targets (e.g. \"pi\") */\n  toolName: string;\n  /** Destination filename (e.g. \"settings.json\" from \"cursor--settings.json\") */\n  name: string;\n  /** Source that provides this entry */\n  source: string;\n  /** Domain where it was found */\n  domain: string;\n  /** Absolute path to the source file */\n  absolutePath: string;\n}\n\nexport interface ToolRootDuplicate {\n  /** The tool name */\n  toolName: string;\n  /** Name of the duplicate entry */\n  name: string;\n  /** Paths where the duplicates were found */\n  paths: string[];\n}\n\n/**\n * Scan all sources × domains for tool-prefixed flat files at the domain level.\n * A file named `cursor--settings.json` targets the tool \"cursor\" with\n * destination filename \"settings.json\".\n */\nexport async function scanToolRootEntries(\n  repoRoot: string,\n  config: BridgeConfig\n): Promise<ToolRootEntry[]> {\n  const entries: ToolRootEntry[] = [];\n  const toolNames = new Set(config.tools.map((t) => t.name));\n\n  for (const source of config.sources) {\n    const srcPath = resolveSourcePath(repoRoot, source);\n    for (const domain of sourceDomains(config, source)) {\n      const domainDir = join(srcPath, domain.name);\n      if (!(await dirExists(domainDir))) continue;\n\n      const domainEntries = await readdir(domainDir, { withFileTypes: true });\n      for (const entry of domainEntries) {\n        if (!entry.isFile() || !isIncluded(domain, entry.name)) continue;\n\n        const { toolPrefix, baseName } = parseToolPrefix(entry.name);\n        if (!toolPrefix || !toolNames.has(toolPrefix)) continue;\n\n        entries.push({\n          toolName: toolPrefix,\n          name: baseName,\n          source: source.name,\n          domain: domain.name,\n          absolutePath: join(domainDir, entry.name),\n        });\n      }\n    }\n  }\n\n  return entries;\n}\n\n/**\n * Detect duplicate tool root entries (same tool + name from multiple sources/domains).\n */\nexport function detectToolRootDuplicates(\n  entries: ToolRootEntry[]\n): ToolRootDuplicate[] {\n  const byKey = new Map<string, ToolRootEntry[]>();\n  for (const entry of entries) {\n    const key = `${entry.toolName}/${entry.name}`;\n    const group = byKey.get(key) ?? [];\n    group.push(entry);\n    byKey.set(key, group);\n  }\n\n  const duplicates: ToolRootDuplicate[] = [];\n  for (const [, group] of byKey) {\n    if (group.length > 1) {\n      duplicates.push({\n        toolName: group[0].toolName,\n        name: group[0].name,\n        paths: group.map((e) => e.absolutePath),\n      });\n    }\n  }\n\n  return duplicates;\n}\n","","import pkg from '../../package.json' with { type: 'json' };\n\nexport const VERSION: string = pkg.version;\n","import { type BridgeConfig, saveConfig, loadConfig } from '../config.js';\nimport { refreshGitHooks } from '../git.js';\nimport { VERSION } from '../version.js';\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/**\n * A migration function receives the repo root and current config,\n * and returns the (possibly modified) config. It may also perform\n * filesystem operations (rename dirs, update files, etc.).\n */\nexport type MigrationFn = (\n  repoRoot: string,\n  config: BridgeConfig\n) => Promise<BridgeConfig>;\n\nexport interface Migration {\n  /** Semver version this migration upgrades TO (e.g. \"0.6.0\"). */\n  version: string;\n  /** Human-readable description shown when running. */\n  description: string;\n  /** The migration logic. */\n  migrate: MigrationFn;\n}\n\nexport interface MigrationResult {\n  fromVersion: string;\n  toVersion: string;\n  applied: string[];\n}\n\n// ---------------------------------------------------------------------------\n// Registry — add new migrations here in semver order\n// ---------------------------------------------------------------------------\n\nexport const migrations: Migration[] = [\n  {\n    version: '0.14.0',\n    description: 'move top-level domains into each source; git hooks run `sync` only',\n    migrate: async (repoRoot, config) => {\n      // Legacy configs list domains once for all sources. Give every source its\n      // own copy (everything included) so the top-level key can go away.\n      const { domains, ...rest } = config;\n      const sources = config.sources.map((s) =>\n        s.domains ? s : { ...s, domains: (domains ?? []).map((name) => ({ name })) }\n      );\n      // `update` was merged into `sync`; rewrite hooks we installed earlier.\n      await refreshGitHooks(repoRoot);\n      return { ...rest, sources };\n    },\n  },\n];\n\n// ---------------------------------------------------------------------------\n// Semver helpers (minimal — no external dep needed)\n// ---------------------------------------------------------------------------\n\n/** Parse \"1.2.3\" or \"1.2.3-beta.1\" into [major, minor, patch]. */\nexport function parseSemver(version: string): [number, number, number] {\n  const clean = version.replace(/^v/, '').split('-')[0];\n  const parts = clean.split('.').map(Number);\n  return [parts[0] ?? 0, parts[1] ?? 0, parts[2] ?? 0];\n}\n\n/** Returns -1 | 0 | 1 comparing a to b (ignores prerelease). */\nexport function compareSemver(a: string, b: string): number {\n  const [aMaj, aMin, aPat] = parseSemver(a);\n  const [bMaj, bMin, bPat] = parseSemver(b);\n\n  if (aMaj !== bMaj) return aMaj < bMaj ? -1 : 1;\n  if (aMin !== bMin) return aMin < bMin ? -1 : 1;\n  if (aPat !== bPat) return aPat < bPat ? -1 : 1;\n  return 0;\n}\n\n// ---------------------------------------------------------------------------\n// Migration runner\n// ---------------------------------------------------------------------------\n\n/**\n * Find migrations that should run when upgrading from `fromVersion` to\n * `toVersion`. Returns them sorted in ascending version order.\n */\nexport function pendingMigrations(\n  fromVersion: string,\n  toVersion: string\n): Migration[] {\n  return migrations\n    .filter(\n      (m) =>\n        compareSemver(m.version, fromVersion) > 0 &&\n        compareSemver(m.version, toVersion) <= 0\n    )\n    .sort((a, b) => compareSemver(a.version, b.version));\n}\n\n/**\n * Run all pending migrations between the config's version and the\n * currently installed VERSION. Updates and saves the config afterwards.\n *\n * Returns null if no migration was needed.\n */\nexport async function runMigrations(\n  repoRoot: string\n): Promise<MigrationResult | null> {\n  let config = await loadConfig(repoRoot);\n  const configVersion = config.version ?? '0.0.0';\n\n  const cmp = compareSemver(configVersion, VERSION);\n\n  // Already current\n  if (cmp === 0) return null;\n\n  // Config is newer than installed package (downgrade)\n  if (cmp > 0) return null;\n\n  // Config is older — find and run migrations\n  const pending = pendingMigrations(configVersion, VERSION);\n  const applied: string[] = [];\n\n  for (const migration of pending) {\n    config = await migration.migrate(repoRoot, config);\n    applied.push(migration.version);\n  }\n\n  // Always update the version, even if no migrations ran\n  // (e.g. patch bump with no structural changes)\n  config = { ...config, version: VERSION };\n  await saveConfig(repoRoot, config);\n\n  return {\n    fromVersion: configVersion,\n    toVersion: VERSION,\n    applied,\n  };\n}\n","import { readdir, mkdir, rmdir, copyFile, readFile, writeFile } from 'node:fs/promises';\nimport { join, dirname, basename } from 'node:path';\nimport type { BridgeConfig } from './config.js';\nimport {\n  dirExists,\n  fileExists,\n  copyDirContents,\n  removeDir,\n  removeFile,\n  readManifest,\n  writeManifest,\n  addToManifest,\n  removeFromManifest,\n  isManifestFolder,\n  manifestEntryName,\n  MARKER_FILENAME,\n} from './fs.js';\nimport {\n  type Feature,\n  type RootFile,\n  type ToolRootEntry,\n  ROOT_FILES,\n  featureMatchesTool,\n  featureName,\n} from './manifest.js';\n\n// ---------------------------------------------------------------------------\n// Feature path helpers\n// ---------------------------------------------------------------------------\n\n/**\n * Compute the destination path for a feature inside a tool's folder.\n * For folder-based features: returns the folder path.\n * For file-based features: returns the file path.\n */\nexport function featureDestPath(\n  repoRoot: string,\n  toolFolder: string,\n  featureType: string,\n  featureName: string\n): string {\n  return join(repoRoot, toolFolder, featureType, featureName);\n}\n\n// ---------------------------------------------------------------------------\n// Conflict detection\n// ---------------------------------------------------------------------------\n\n/**\n * Check whether a folder-based feature destination conflicts with existing user content.\n * Returns `true` when the folder exists and is not tracked in the manifest.\n */\nexport async function checkFolderConflict(featureTypeDir: string, folderName: string): Promise<boolean> {\n  const destPath = join(featureTypeDir, folderName);\n  if (!(await dirExists(destPath))) return false;\n  \n  const manifest = await readManifest(featureTypeDir);\n  return !manifest.includes(folderName + '/');\n}\n\n/**\n * Check whether a file-based feature destination conflicts with existing user content.\n * Returns `true` when the file exists and is not tracked in the manifest.\n */\nexport async function checkFileConflict(featureTypeDir: string, fileName: string): Promise<boolean> {\n  const filePath = join(featureTypeDir, fileName);\n  if (!(await fileExists(filePath))) return false;\n  \n  const manifest = await readManifest(featureTypeDir);\n  return !manifest.includes(fileName);\n}\n\n/**\n * Check whether a feature destination conflicts with existing user content.\n * Handles both folder-based and file-based features.\n */\nexport async function checkPathConflict(\n  featureTypeDir: string,\n  featureName: string,\n  isFile: boolean\n): Promise<boolean> {\n  if (isFile) {\n    return checkFileConflict(featureTypeDir, featureName);\n  } else {\n    return checkFolderConflict(featureTypeDir, featureName);\n  }\n}\n\n// ---------------------------------------------------------------------------\n// Single feature sync\n// ---------------------------------------------------------------------------\n\n/**\n * Sync a folder-based feature: clear destination, copy files, add to manifest.\n */\nexport async function syncFolderFeature(\n  sourcePath: string,\n  featureTypeDir: string,\n  folderName: string\n): Promise<'created' | 'updated'> {\n  const destPath = join(featureTypeDir, folderName);\n  const existed = await dirExists(destPath);\n\n  if (existed) {\n    await removeDir(destPath);\n  }\n\n  await mkdir(destPath, { recursive: true });\n  await copyDirContents(sourcePath, destPath);\n  await addToManifest(featureTypeDir, folderName + '/');\n\n  return existed ? 'updated' : 'created';\n}\n\n/**\n * Sync a file-based feature: copy file, add to manifest.\n */\nexport async function syncFileFeature(\n  sourcePath: string,\n  featureTypeDir: string,\n  fileName: string\n): Promise<'created' | 'updated'> {\n  const destPath = join(featureTypeDir, fileName);\n  const existed = await fileExists(destPath);\n\n  await mkdir(featureTypeDir, { recursive: true });\n  await copyFile(sourcePath, destPath);\n  await addToManifest(featureTypeDir, fileName);\n\n  return existed ? 'updated' : 'created';\n}\n\n/**\n * Sync a feature (folder or file based).\n * @deprecated Use syncFolderFeature or syncFileFeature directly\n */\nexport async function syncFeature(\n  sourcePath: string,\n  destPath: string\n): Promise<'created' | 'updated'> {\n  const featureTypeDir = dirname(destPath);\n  const folderName = basename(destPath);\n  return syncFolderFeature(sourcePath, featureTypeDir, folderName);\n}\n\n// ---------------------------------------------------------------------------\n// Empty directory cleanup\n// ---------------------------------------------------------------------------\n\nexport async function removeEmptyParents(\n  dirPath: string,\n  stopAt: string\n): Promise<void> {\n  let current = dirPath;\n  while (current !== stopAt && current.startsWith(stopAt)) {\n    try {\n      const entries = await readdir(current);\n      if (entries.length > 0) break;\n      await rmdir(current);\n      current = dirname(current);\n    } catch {\n      break;\n    }\n  }\n}\n\n// ---------------------------------------------------------------------------\n// Collect all managed entries from manifests\n// ---------------------------------------------------------------------------\n\ninterface ManagedEntry {\n  /** Full path to the file or folder */\n  path: string;\n  /** Directory containing the manifest (feature-type dir) */\n  manifestDir: string;\n  /** Entry as it appears in manifest (with trailing / for folders) */\n  manifestEntry: string;\n  /** True if folder, false if file */\n  isFolder: boolean;\n}\n\n/**\n * Recursively collect all managed entries (files and folders) from manifests.\n * Scans for .agentbridge files and reads their contents.\n */\nasync function collectManagedEntries(dir: string): Promise<ManagedEntry[]> {\n  if (!(await dirExists(dir))) return [];\n\n  const result: ManagedEntry[] = [];\n  const entries = await readdir(dir, { withFileTypes: true });\n\n  // Check if this directory has a manifest\n  const manifestEntries = await readManifest(dir);\n  for (const entry of manifestEntries) {\n    const isFolder = isManifestFolder(entry);\n    const name = manifestEntryName(entry);\n    result.push({\n      path: join(dir, name),\n      manifestDir: dir,\n      manifestEntry: entry,\n      isFolder,\n    });\n  }\n\n  // Recurse into subdirectories (to find manifests in nested feature-type dirs)\n  for (const entry of entries) {\n    if (!entry.isDirectory()) continue;\n    if (entry.name === MARKER_FILENAME) continue;\n    \n    const fullPath = join(dir, entry.name);\n    const sub = await collectManagedEntries(fullPath);\n    result.push(...sub);\n  }\n\n  return result;\n}\n\n// ---------------------------------------------------------------------------\n// Reconciliation (high-level)\n// ---------------------------------------------------------------------------\n\nexport interface ReconcileResult {\n  added: number;\n  updated: number;\n  removed: number;\n  errors: Array<{ path: string; error: string }>;\n}\n\ninterface ExpectedFeature {\n  sourcePath: string;\n  featureTypeDir: string;\n  name: string;\n  manifestEntry: string;\n  isFile: boolean;\n}\n\nexport async function reconcileFeatures(\n  repoRoot: string,\n  config: BridgeConfig,\n  features: Feature[]\n): Promise<ReconcileResult> {\n  let added = 0;\n  let updated = 0;\n  let removed = 0;\n  const errors: Array<{ path: string; error: string }> = [];\n\n  // Phase 1: Compute all expected features\n  // Key = full destination path\n  const expectedFeatures = new Map<string, ExpectedFeature>();\n\n  for (const tool of config.tools) {\n    for (const feature of features) {\n      if (!featureMatchesTool(feature, tool.name)) continue;\n\n      const name = featureName(feature);\n      const featureTypeDir = join(repoRoot, tool.folder, feature.displayType);\n      const destPath = join(featureTypeDir, name);\n      const manifestEntry = feature.isFile ? name : name + '/';\n\n      expectedFeatures.set(destPath, {\n        sourcePath: feature.absolutePath,\n        featureTypeDir,\n        name,\n        manifestEntry,\n        isFile: feature.isFile,\n      });\n    }\n  }\n\n  // Phase 2: Remove orphaned managed entries (previously synced but no longer expected)\n  for (const tool of config.tools) {\n    const toolDir = join(repoRoot, tool.folder);\n    const managedEntries = await collectManagedEntries(toolDir);\n\n    for (const entry of managedEntries) {\n      if (expectedFeatures.has(entry.path)) continue;\n\n      try {\n        if (entry.isFolder) {\n          await removeDir(entry.path);\n        } else {\n          await removeFile(entry.path);\n        }\n        await removeFromManifest(entry.manifestDir, entry.manifestEntry);\n        await removeEmptyParents(entry.manifestDir, toolDir);\n        removed++;\n      } catch (err) {\n        errors.push({\n          path: entry.path,\n          error: err instanceof Error ? err.message : String(err),\n        });\n      }\n    }\n  }\n\n  // Phase 3: Create / update features (isolate failures so one bad feature\n  // doesn't abort the entire sync).\n  for (const [destPath, expected] of expectedFeatures) {\n    try {\n      const result = expected.isFile\n        ? await syncFileFeature(\n            expected.sourcePath,\n            expected.featureTypeDir,\n            expected.name\n          )\n        : await syncFolderFeature(\n            expected.sourcePath,\n            expected.featureTypeDir,\n            expected.name\n          );\n\n      if (result === 'created') added++;\n      else if (result === 'updated') updated++;\n    } catch (err) {\n      errors.push({\n        path: destPath,\n        error: err instanceof Error ? err.message : String(err),\n      });\n    }\n  }\n\n  return { added, updated, removed, errors };\n}\n\n// ---------------------------------------------------------------------------\n// Root file sync\n// ---------------------------------------------------------------------------\n\nconst ROOT_FILE_MARKER = '<!-- Managed by Agent Bridge -->';\n\n/**\n * Check if a root file at `destPath` is managed by Agent Bridge.\n * A file is managed if it starts with the marker comment.\n */\nexport async function isRootFileManaged(destPath: string): Promise<boolean> {\n  if (!(await fileExists(destPath))) return false;\n  const content = await readFile(destPath, 'utf-8');\n  return content.startsWith(ROOT_FILE_MARKER);\n}\n\nexport interface RootFileSyncResult {\n  synced: string[];\n  removed: string[];\n  errors: Array<{ path: string; error: string }>;\n}\n\n/**\n * Sync root files: copy source root files to the workspace root, and clean up\n * managed root files that are no longer provided by any source.\n */\nexport async function syncRootFiles(\n  repoRoot: string,\n  rootFiles: RootFile[]\n): Promise<RootFileSyncResult> {\n  const synced: string[] = [];\n  const removed: string[] = [];\n  const errors: Array<{ path: string; error: string }> = [];\n\n  // Build map: fileName → rootFile (already deduplicated by caller)\n  const expected = new Map<string, RootFile>();\n  for (const rf of rootFiles) {\n    expected.set(rf.fileName, rf);\n  }\n\n  // Sync expected root files\n  for (const [fileName, rf] of expected) {\n    const destPath = join(repoRoot, fileName);\n    try {\n      // If file exists and is NOT managed by us, skip (don't overwrite user files)\n      if (await fileExists(destPath)) {\n        if (!(await isRootFileManaged(destPath))) {\n          continue;\n        }\n      }\n\n      const sourceContent = await readFile(rf.absolutePath, 'utf-8');\n      const managedContent = ROOT_FILE_MARKER + '\\n' + sourceContent;\n      await mkdir(dirname(destPath), { recursive: true });\n      await writeFile(destPath, managedContent, 'utf-8');\n      synced.push(fileName);\n    } catch (err) {\n      errors.push({\n        path: destPath,\n        error: err instanceof Error ? err.message : String(err),\n      });\n    }\n  }\n\n  // Remove managed root files no longer provided by any source\n  for (const fileName of ROOT_FILES) {\n    if (expected.has(fileName)) continue;\n    const destPath = join(repoRoot, fileName);\n    try {\n      if (await isRootFileManaged(destPath)) {\n        await removeFile(destPath);\n        removed.push(fileName);\n      }\n    } catch (err) {\n      errors.push({\n        path: destPath,\n        error: err instanceof Error ? err.message : String(err),\n      });\n    }\n  }\n\n  return { synced, removed, errors };\n}\n\n// ---------------------------------------------------------------------------\n// Tool root entry sync (tool-prefixed flat files)\n// ---------------------------------------------------------------------------\n\nexport interface ToolRootSyncResult {\n  added: number;\n  updated: number;\n  removed: number;\n  errors: Array<{ path: string; error: string }>;\n}\n\n/**\n * Reconcile tool root entries: sync expected entries and remove orphans.\n * Tool-prefixed flat files (e.g. `cursor--settings.json`) are copied directly\n * into the tool's root folder (e.g. `.cursor/settings.json`).\n */\nexport async function reconcileToolRootEntries(\n  repoRoot: string,\n  config: BridgeConfig,\n  entries: ToolRootEntry[]\n): Promise<ToolRootSyncResult> {\n  let added = 0;\n  let updated = 0;\n  let removed = 0;\n  const errors: Array<{ path: string; error: string }> = [];\n\n  // Build tool name → folder mapping\n  const toolFolders = new Map<string, string>();\n  for (const tool of config.tools) {\n    toolFolders.set(tool.name, tool.folder);\n  }\n\n  // Key = destination path, value = entry info\n  const expectedEntries = new Map<\n    string,\n    { sourcePath: string; name: string; toolDir: string }\n  >();\n\n  for (const entry of entries) {\n    const folder = toolFolders.get(entry.toolName);\n    if (!folder) continue;\n\n    const toolDir = join(repoRoot, folder);\n    const destPath = join(toolDir, entry.name);\n\n    expectedEntries.set(destPath, {\n      sourcePath: entry.absolutePath,\n      name: entry.name,\n      toolDir,\n    });\n  }\n\n  // Remove orphaned managed entries from tool root directories\n  for (const tool of config.tools) {\n    const toolDir = join(repoRoot, tool.folder);\n    const manifest = await readManifest(toolDir);\n\n    for (const manifestEntry of manifest) {\n      const isFolder = isManifestFolder(manifestEntry);\n      const name = manifestEntryName(manifestEntry);\n      const destPath = join(toolDir, name);\n\n      if (expectedEntries.has(destPath)) continue;\n\n      try {\n        if (isFolder) {\n          await removeDir(destPath);\n        } else {\n          await removeFile(destPath);\n        }\n        await removeFromManifest(toolDir, manifestEntry);\n        removed++;\n      } catch (err) {\n        errors.push({\n          path: destPath,\n          error: err instanceof Error ? err.message : String(err),\n        });\n      }\n    }\n  }\n\n  // Sync expected entries (always files)\n  for (const [, expected] of expectedEntries) {\n    try {\n      const result = await syncFileFeature(\n        expected.sourcePath,\n        expected.toolDir,\n        expected.name\n      );\n\n      if (result === 'created') added++;\n      else if (result === 'updated') updated++;\n    } catch (err) {\n      errors.push({\n        path: join(expected.toolDir, expected.name),\n        error: err instanceof Error ? err.message : String(err),\n      });\n    }\n  }\n\n  return { added, updated, removed, errors };\n}\n","import * as p from '@clack/prompts';\nimport { loadConfig, isOptedOut, OPT_OUT_MARKER } from '../lib/config.js';\nimport { findRepoRoot } from '../lib/git.js';\nimport { runMigrations } from '../lib/migrations/index.js';\nimport {\n  discoverFeatureTypes,\n  scanFeatures,\n  detectDuplicates,\n  scanRootFiles,\n  detectRootFileDuplicates,\n  scanToolRootEntries,\n  detectToolRootDuplicates,\n  featureMatchesTool,\n  featureName,\n} from '../lib/manifest.js';\nimport {\n  featureDestPath,\n  checkPathConflict,\n  reconcileFeatures,\n  syncRootFiles,\n  reconcileToolRootEntries,\n} from '../lib/sync.js';\nimport { syncAllSources, removeStaleSourceDirs } from '../lib/sources.js';\nimport { join } from 'node:path';\n\nexport async function syncCommand(cwd?: string, _opts?: unknown): Promise<void> {\n  const repoRoot = cwd ?? findRepoRoot();\n\n  p.intro('Agent Bridge Sync');\n\n  // Respect an opt-out tombstone so a postinstall guard doesn't re-sync.\n  if (await isOptedOut(repoRoot)) {\n    p.log.warn(`${OPT_OUT_MARKER} present — Agent Bridge is opted out. Skipping sync.`);\n    p.outro('Skipped (opted out).');\n    return;\n  }\n\n  const s = p.spinner();\n\n  // --- Phase 1: Load & validate config ---\n  s.start('Loading configuration…');\n\n  // Run pending migrations first so we work with the upgraded config\n  const migrationResult = await runMigrations(repoRoot);\n  if (migrationResult) {\n    p.log.info(\n      `Config upgraded ${migrationResult.fromVersion} → ${migrationResult.toVersion}` +\n        (migrationResult.applied.length > 0\n          ? ` (${migrationResult.applied.length} migration(s))`\n          : '')\n    );\n  }\n\n  const config = await loadConfig(repoRoot);\n  s.stop('Configuration valid');\n\n  // --- Phase 2: Fetch sources (clone new, pull existing) ---\n  s.start('Fetching sources…');\n\n  const sourceResults = await syncAllSources(repoRoot, config);\n  const sourceErrors = sourceResults.filter((r) => r.error);\n  if (sourceErrors.length > 0) {\n    s.stop('Some sources failed');\n    for (const err of sourceErrors) {\n      p.log.error(`${err.name}: ${err.error}`);\n    }\n    process.exit(1);\n  }\n\n  // Clean up stale source directories\n  const staleRemoved = await removeStaleSourceDirs(repoRoot, config);\n  if (staleRemoved.length > 0) {\n    for (const name of staleRemoved) {\n      p.log.info(`Removed stale source: ${name}`);\n    }\n  }\n\n  for (const r of sourceResults) {\n    if (r.action !== 'local') {\n      p.log.info(`${r.name}: ${r.action}`);\n    }\n  }\n\n  s.stop('Sources up to date');\n\n  // --- Phase 3: Discover & validate features ---\n  s.start('Discovering features…');\n\n  const featureTypes = await discoverFeatureTypes(repoRoot, config);\n  const features = await scanFeatures(repoRoot, config, featureTypes);\n  const rootFiles = await scanRootFiles(repoRoot, config);\n  const toolRootEntries = await scanToolRootEntries(repoRoot, config);\n\n  const duplicates = detectDuplicates(features);\n  if (duplicates.length > 0) {\n    s.stop('Duplicate features detected');\n    for (const dup of duplicates) {\n      p.log.error(\n        `Duplicate \"${dup.name}\" (${dup.type}): ${dup.paths.join(', ')}`\n      );\n    }\n    process.exit(1);\n  }\n\n  const rootDuplicates = detectRootFileDuplicates(rootFiles);\n  if (rootDuplicates.length > 0) {\n    s.stop('Duplicate root files detected');\n    for (const dup of rootDuplicates) {\n      p.log.error(\n        `Duplicate \"${dup.fileName}\": ${dup.paths.join(', ')}`\n      );\n    }\n    process.exit(1);\n  }\n\n  const toolRootDuplicates = detectToolRootDuplicates(toolRootEntries);\n  if (toolRootDuplicates.length > 0) {\n    s.stop('Duplicate tool root entries detected');\n    for (const dup of toolRootDuplicates) {\n      p.log.error(\n        `Duplicate \"${dup.name}\" for tool \"${dup.toolName}\": ${dup.paths.join(', ')}`\n      );\n    }\n    process.exit(1);\n  }\n\n  s.stop(`${features.length} features found${rootFiles.length > 0 ? `, ${rootFiles.length} root file(s)` : ''}${toolRootEntries.length > 0 ? `, ${toolRootEntries.length} tool root entr${toolRootEntries.length === 1 ? 'y' : 'ies'}` : ''}`);\n\n  // --- Phase 3b: Detect path conflicts ---\n  s.start('Checking for path conflicts…');\n\n  const conflicts: string[] = [];\n  for (const tool of config.tools) {\n    for (const feature of features) {\n      if (!featureMatchesTool(feature, tool.name)) continue;\n\n      const linkName = featureName(feature);\n      const featureTypeDir = join(repoRoot, tool.folder, feature.displayType);\n      const dest = featureDestPath(\n        repoRoot,\n        tool.folder,\n        feature.displayType,\n        linkName\n      );\n      if (await checkPathConflict(featureTypeDir, linkName, feature.isFile)) {\n        conflicts.push(dest);\n      }\n    }\n  }\n\n  if (conflicts.length > 0) {\n    s.stop('Path conflicts detected');\n    for (const c of conflicts) {\n      p.log.error(`Conflict: \"${c}\" exists as a real file or directory`);\n    }\n    p.log.info('Remove or rename the conflicting paths, then re-run sync.');\n    process.exit(1);\n  }\n\n  s.stop('No path conflicts');\n\n  // --- Phase 4: Reconcile features ---\n  s.start('Reconciling features…');\n\n  const result = await reconcileFeatures(repoRoot, config, features);\n\n  s.stop('Features reconciled');\n\n  p.log.info(\n    `Added: ${result.added}  Updated: ${result.updated}  Removed: ${result.removed}`\n  );\n\n  if (result.errors.length > 0) {\n    for (const err of result.errors) {\n      p.log.error(`${err.path}: ${err.error}`);\n    }\n    p.outro(`Sync completed with ${result.errors.length} error(s).`);\n    process.exit(1);\n  }\n\n  // --- Phase 5: Sync root files ---\n  if (rootFiles.length > 0) {\n    s.start('Syncing root files…');\n\n    const rootResult = await syncRootFiles(repoRoot, rootFiles);\n\n    for (const name of rootResult.synced) {\n      p.log.info(`Root file synced: ${name}`);\n    }\n    for (const name of rootResult.removed) {\n      p.log.info(`Root file removed: ${name}`);\n    }\n    for (const err of rootResult.errors) {\n      p.log.error(`${err.path}: ${err.error}`);\n    }\n\n    s.stop('Root files synced');\n  } else {\n    // Clean up any managed root files when no sources provide them\n    const rootResult = await syncRootFiles(repoRoot, []);\n    for (const name of rootResult.removed) {\n      p.log.info(`Root file removed: ${name}`);\n    }\n  }\n\n  // --- Phase 6: Sync tool root entries ---\n  s.start('Syncing tool root entries…');\n\n  const toolRootResult = await reconcileToolRootEntries(\n    repoRoot,\n    config,\n    toolRootEntries\n  );\n\n  if (\n    toolRootResult.added > 0 ||\n    toolRootResult.updated > 0 ||\n    toolRootResult.removed > 0\n  ) {\n    p.log.info(\n      `Tool root: Added: ${toolRootResult.added}  Updated: ${toolRootResult.updated}  Removed: ${toolRootResult.removed}`\n    );\n  }\n\n  if (toolRootResult.errors.length > 0) {\n    for (const err of toolRootResult.errors) {\n      p.log.error(`${err.path}: ${err.error}`);\n    }\n    s.stop('Tool root entries synced with errors');\n    p.outro(`Sync completed with ${toolRootResult.errors.length} error(s).`);\n    process.exit(1);\n  }\n\n  s.stop('Tool root entries synced');\n\n  p.outro('Sync complete.');\n}\n","import * as p from '@clack/prompts';\nimport { resolve } from 'node:path';\nimport {\n  configExists,\n  isRemoteSource,\n  loadConfig,\n  saveConfig,\n  isOptedOut,\n  removeOptOutMarker,\n  OPT_OUT_MARKER,\n  type BridgeConfig,\n  type DomainConfig,\n  type ToolConfig,\n  type SourceConfig,\n} from '../lib/config.js';\nimport { findRepoRoot, isInGitRepo, installGitHooks } from '../lib/git.js';\nimport { listDomains, listDomainContents } from '../lib/manifest.js';\nimport { syncSource, resolveSourcePath, ensureBridgeGitignore } from '../lib/sources.js';\nimport { VERSION } from '../lib/version.js';\nimport { syncCommand } from './sync.js';\n\nconst WELL_KNOWN_TOOLS = [\n  { value: { name: 'vscode', folder: '.github' }, label: 'VS Code (.github/)' },\n  { value: { name: 'cursor', folder: '.cursor' }, label: 'Cursor (.cursor/)' },\n  { value: { name: 'claude', folder: '.claude' }, label: 'Claude (.claude/)' },\n  { value: { name: 'pi', folder: '.pi' }, label: 'Pi (.pi/)' },\n];\n\nconst WELL_KNOWN_TOOL_MAP: Record<string, ToolConfig> = Object.fromEntries(\n  WELL_KNOWN_TOOLS.map((t) => [t.value.name, t.value])\n);\n\nconst CUSTOM_TOOL_SENTINEL: ToolConfig = { name: '__custom__', folder: '__custom__' };\n\nexport interface InitOptions {\n  force?: boolean;\n  domains?: string;\n  tools?: string;\n  source?: string[];\n  hooks?: boolean;\n}\n\n// ---------------------------------------------------------------------------\n// Argument parsing (shared by interactive and non-interactive mode)\n// ---------------------------------------------------------------------------\n\n/**\n * Derive a short source name from a URL or local path.\n *\n * Examples:\n *   https://github.com/org/repo.git  → repo\n *   git@github.com:org/repo.git      → repo\n *   file:///tmp/bare.git             → bare\n *   /path/to/my-folder               → my-folder\n */\nexport function deriveSourceName(source: string): string {\n  let segment = source;\n\n  // SSH: git@host:org/repo.git → org/repo.git\n  const sshMatch = segment.match(/^[\\w.-]+@[\\w.-]+:(.+)$/);\n  if (sshMatch) segment = sshMatch[1];\n\n  // Strip protocol + host for URLs\n  try {\n    const url = new URL(segment);\n    segment = url.pathname;\n  } catch {\n    // not a URL — keep as-is (local path or already stripped)\n  }\n\n  // Take the last path component, strip trailing slashes and .git suffix\n  const base = segment.replace(/\\/+$/, '').split('/').pop() ?? segment;\n  return base.replace(/\\.git$/, '') || 'source';\n}\n\n/**\n * Parse a comma-separated `--tools` argument into ToolConfig[].\n * Accepts well-known names (cursor, vscode, claude) or `name:folder` pairs.\n */\nexport function parseToolsArg(input: string): ToolConfig[] {\n  return input.split(',').map((t) => {\n    const trimmed = t.trim();\n    if (!trimmed) throw new Error('Empty tool name in --tools');\n\n    if (WELL_KNOWN_TOOL_MAP[trimmed]) return WELL_KNOWN_TOOL_MAP[trimmed];\n\n    const colonIdx = trimmed.indexOf(':');\n    if (colonIdx > 0) {\n      return { name: trimmed.slice(0, colonIdx), folder: trimmed.slice(colonIdx + 1) };\n    }\n\n    throw new Error(\n      `Unknown tool \"${trimmed}\". Use a known name (${Object.keys(WELL_KNOWN_TOOL_MAP).join(', ')}) or name:folder format.`\n    );\n  });\n}\n\n/**\n * Parse a single `--source` argument into a SourceConfig.\n * Supports `#branch` suffix for remote sources.\n */\nexport function parseSourceArg(input: string, repoRoot: string): SourceConfig {\n  let source = input.trim();\n  let branch: string | undefined;\n\n  const hashIdx = source.lastIndexOf('#');\n  if (hashIdx > 0) {\n    branch = source.slice(hashIdx + 1);\n    source = source.slice(0, hashIdx);\n  }\n\n  if (!source) throw new Error('Empty source in --source');\n\n  const name = deriveSourceName(source);\n  const entry: SourceConfig = { name, source };\n\n  if (!isRemoteSource(entry.source)) {\n    entry.source = resolve(repoRoot, entry.source);\n  }\n\n  if (branch) {\n    entry.branch = branch;\n  }\n\n  return entry;\n}\n\n/**\n * Turn a per-domain selection into the `include` list stored in config.\n * Returns `undefined` when everything is selected (= sync the whole domain).\n * A fully selected feature type collapses to its name (`skills`).\n */\nexport function buildInclude(\n  contents: { featureTypes: Array<{ name: string; features: string[] }>; files: string[] },\n  selected: Set<string>\n): string[] | undefined {\n  const include: string[] = [];\n  let everything = true;\n\n  for (const ft of contents.featureTypes) {\n    const picked = ft.features.filter((f) => selected.has(`${ft.name}/${f}`));\n    if (picked.length === ft.features.length) {\n      include.push(ft.name);\n    } else {\n      everything = false;\n      include.push(...picked.map((f) => `${ft.name}/${f}`));\n    }\n  }\n  for (const file of contents.files) {\n    if (selected.has(file)) include.push(file);\n    else everything = false;\n  }\n\n  return everything ? undefined : include;\n}\n\n// ---------------------------------------------------------------------------\n// Shared steps\n// ---------------------------------------------------------------------------\n\nfunction cancelled(value: unknown): value is symbol {\n  if (p.isCancel(value)) {\n    p.cancel('Setup cancelled.');\n    process.exit(1);\n  }\n  return false;\n}\n\n/** Clone remote sources / verify local ones. Exits on failure. */\nasync function fetchSources(repoRoot: string, sources: SourceConfig[]): Promise<void> {\n  await ensureBridgeGitignore(repoRoot);\n  const s = p.spinner();\n  s.start('Fetching sources…');\n  const results = await Promise.all(sources.map((src) => syncSource(repoRoot, src)));\n  const errors = results.filter((r) => r.error);\n  if (errors.length > 0) {\n    s.stop('Some sources failed');\n    for (const err of errors) p.log.error(`${err.name}: ${err.error}`);\n    p.cancel('Fix the source URL/path and run `agent-bridge init` again.');\n    process.exit(1);\n  }\n  s.stop(`${sources.length} source(s) ready`);\n}\n\nasync function maybeInstallHooks(repoRoot: string, force: boolean): Promise<void> {\n  const hookResult = await installGitHooks(repoRoot, force);\n  if (hookResult.installed.length > 0) {\n    p.log.success(`Installed git hooks: ${hookResult.installed.join(', ')}`);\n  }\n  if (hookResult.skipped.length > 0) {\n    p.log.warn(`Skipped hooks (existing non-Agent-Bridge hooks): ${hookResult.skipped.join(', ')}`);\n    p.log.info('Re-run `agent-bridge init --force` to overwrite, or integrate manually.');\n  }\n  for (const e of hookResult.errors) {\n    p.log.error(`Hook ${e.hook}: ${e.error}`);\n  }\n}\n\n// ---------------------------------------------------------------------------\n// Interactive prompts\n// ---------------------------------------------------------------------------\n\nasync function promptTools(): Promise<ToolConfig[]> {\n  const selected = await p.multiselect({\n    message: 'Which tools should receive synced files?',\n    options: [...WELL_KNOWN_TOOLS, { value: CUSTOM_TOOL_SENTINEL, label: 'Other (add custom tool)' }],\n    required: true,\n  });\n  cancelled(selected);\n\n  const tools = (selected as ToolConfig[]).filter((t) => t.name !== CUSTOM_TOOL_SENTINEL.name);\n  if (!(selected as ToolConfig[]).some((t) => t.name === CUSTOM_TOOL_SENTINEL.name)) return tools;\n\n  for (;;) {\n    const name = await p.text({\n      message: 'Custom tool name (used for <tool>-- prefix matching)',\n      placeholder: 'windsurf',\n      validate: (v) => {\n        if (!v.trim()) return 'Tool name cannot be empty';\n        if (tools.some((t) => t.name === v.trim())) return 'Tool name already used';\n      },\n    });\n    if (p.isCancel(name)) break;\n\n    const folder = await p.text({\n      message: `Target folder for \"${name}\"`,\n      placeholder: `.${name}`,\n      validate: (v) => {\n        if (!v.trim()) return 'Folder cannot be empty';\n        if (tools.some((t) => t.folder === v.trim())) return 'Folder already used by another tool';\n      },\n    });\n    if (p.isCancel(folder)) break;\n\n    tools.push({ name: name.trim(), folder: folder.trim() });\n\n    const more = await p.confirm({ message: 'Add another custom tool?', initialValue: false });\n    if (p.isCancel(more) || !more) break;\n  }\n\n  if (tools.length === 0) {\n    p.cancel('At least one tool is required.');\n    process.exit(1);\n  }\n  return tools;\n}\n\nasync function promptSources(repoRoot: string): Promise<SourceConfig[]> {\n  const sources: SourceConfig[] = [];\n  p.log.info('Add at least one source — a Git URL or a local folder that follows the domain layout.');\n\n  for (;;) {\n    const input = await p.text({\n      message: sources.length === 0 ? 'Source URL or local path' : 'Another source URL or local path',\n      placeholder: 'https://github.com/org/ai-hub.git',\n      validate: (v) => {\n        if (!v.trim()) return 'Source URL/path cannot be empty';\n        const derived = deriveSourceName(v.trim());\n        if (sources.some((s) => s.name === derived))\n          return `Source name \"${derived}\" (derived from URL) already used`;\n      },\n    });\n    if (p.isCancel(input)) {\n      if (sources.length === 0) cancelled(input);\n      break;\n    }\n\n    const entry = parseSourceArg(input, repoRoot);\n    if (isRemoteSource(entry.source) && !entry.branch) {\n      const branch = await p.text({\n        message: 'Branch (leave empty for the remote default)',\n        placeholder: 'main',\n        defaultValue: '',\n      });\n      cancelled(branch);\n      if ((branch as string).trim()) entry.branch = (branch as string).trim();\n    }\n    sources.push(entry);\n\n    const more = await p.confirm({ message: 'Add another source?', initialValue: false });\n    if (p.isCancel(more) || !more) break;\n  }\n  return sources;\n}\n\n/**\n * Show every domain found in every source as one grouped checklist\n * (group = source). Returns the picked domain names per source.\n */\nasync function promptDomains(\n  repoRoot: string,\n  sources: SourceConfig[]\n): Promise<Map<string, string[]>> {\n  const options: Record<string, Array<{ value: string; label: string; hint?: string }>> = {};\n  for (const source of sources) {\n    const srcPath = resolveSourcePath(repoRoot, source);\n    const domains = await listDomains(srcPath);\n    if (domains.length === 0) {\n      p.log.warn(`${source.name}: no domain folders found — nothing to select.`);\n      continue;\n    }\n    options[source.name] = [];\n    for (const domain of domains) {\n      const contents = await listDomainContents(srcPath, domain, []);\n      const hint = contents.featureTypes\n        .filter((ft) => ft.features.length > 0)\n        .map((ft) => `${ft.features.length} ${ft.name}`)\n        .join(', ');\n      options[source.name].push({ value: `${source.name}/${domain}`, label: domain, hint: hint || undefined });\n    }\n  }\n\n  if (Object.keys(options).length === 0) {\n    p.cancel('No domains found in any source. Check the source layout: <source>/<domain>/<feature-type>/…');\n    process.exit(1);\n  }\n\n  const picked = await p.groupMultiselect({\n    message: 'Which domains do you want to sync? (space = toggle, pick a source to toggle all its domains)',\n    options,\n    required: true,\n  });\n  cancelled(picked);\n\n  const bySource = new Map<string, string[]>();\n  for (const value of picked as string[]) {\n    const idx = value.indexOf('/');\n    const sourceName = value.slice(0, idx);\n    const domain = value.slice(idx + 1);\n    bySource.set(sourceName, [...(bySource.get(sourceName) ?? []), domain]);\n  }\n  return bySource;\n}\n\n/** Let the user deselect individual features / files inside one domain. */\nasync function promptInclude(\n  srcPath: string,\n  sourceName: string,\n  domain: string,\n  toolNames: string[]\n): Promise<string[] | undefined> {\n  const contents = await listDomainContents(srcPath, domain, toolNames);\n  const options: Record<string, Array<{ value: string; label: string }>> = {};\n  for (const ft of contents.featureTypes) {\n    if (ft.features.length === 0) continue;\n    options[ft.name] = ft.features.map((f) => ({ value: `${ft.name}/${f}`, label: f }));\n  }\n  if (contents.files.length > 0) {\n    options['files'] = contents.files.map((f) => ({ value: f, label: f }));\n  }\n  if (Object.keys(options).length === 0) return undefined;\n\n  const all = Object.values(options).flatMap((o) => o.map((x) => x.value));\n  const picked = await p.groupMultiselect({\n    message: `${sourceName}/${domain}: deselect what you don't want`,\n    options,\n    initialValues: all,\n    required: true,\n  });\n  cancelled(picked);\n\n  return buildInclude(contents, new Set(picked as string[]));\n}\n\n// ---------------------------------------------------------------------------\n// Command\n// ---------------------------------------------------------------------------\n\nexport async function initCommand(cwd?: string, opts?: InitOptions): Promise<void> {\n  const repoRoot = cwd ?? findRepoRoot();\n\n  // Respect an opt-out tombstone so a postinstall guard doesn't reinstall.\n  // `--force` clears it (deliberate re-opt-in).\n  if (await isOptedOut(repoRoot)) {\n    if (opts?.force) {\n      await removeOptOutMarker(repoRoot);\n    } else {\n      p.log.warn(\n        `${OPT_OUT_MARKER} present — Agent Bridge is opted out. ` +\n          `Skipping init. Delete the file or run with --force to re-enable.`\n      );\n      return;\n    }\n  }\n\n  const hasToolsArg = !!opts?.tools;\n  const hasSourceArg = !!(opts?.source && opts.source.length > 0);\n\n  if (hasToolsArg !== hasSourceArg) {\n    p.log.error('Both --tools and --source are required for non-interactive init.');\n    process.exit(1);\n  }\n\n  // --- Non-interactive mode ---\n  if (hasToolsArg && hasSourceArg) {\n    const tools = parseToolsArg(opts!.tools!);\n    const sources = opts!.source!.map((s) => parseSourceArg(s, repoRoot));\n\n    const seen = new Set<string>();\n    for (const s of sources) {\n      if (seen.has(s.name)) {\n        throw new Error(`Duplicate source name \"${s.name}\" derived from --source arguments`);\n      }\n      seen.add(s.name);\n    }\n\n    await fetchSources(repoRoot, sources);\n\n    const domainsArg = opts!.domains\n      ? opts!.domains.split(',').map((d) => d.trim()).filter(Boolean)\n      : undefined;\n    for (const source of sources) {\n      const names = domainsArg ?? (await listDomains(resolveSourcePath(repoRoot, source)));\n      source.domains = names.map((name): DomainConfig => ({ name }));\n      if (source.domains.length === 0) {\n        p.log.warn(`${source.name}: no domains found — add some or pass --domains.`);\n      }\n    }\n\n    const config: BridgeConfig = { version: VERSION, tools, sources };\n    await saveConfig(repoRoot, config);\n    p.log.success('Saved .agent-bridge/config.yml');\n\n    if (opts!.hooks && isInGitRepo(repoRoot)) {\n      await maybeInstallHooks(repoRoot, opts!.force === true);\n    }\n\n    p.outro('Done! Run `agent-bridge sync` to sync features.');\n    return;\n  }\n\n  // --- Interactive mode ---\n  p.intro('Agent Bridge — Project Setup');\n\n  if (await configExists(repoRoot)) {\n    const existing = await loadConfig(repoRoot);\n    p.log.info(\n      `Config already exists with ${existing.sources.length} source(s). Finishing this setup will overwrite it.`\n    );\n  }\n\n  // 1. Tools\n  const tools = await promptTools();\n\n  // 2. Sources (then fetch them so we can show what's inside)\n  const sources = await promptSources(repoRoot);\n  await fetchSources(repoRoot, sources);\n\n  // 3. Domains, grouped by source\n  const pickedDomains = await promptDomains(repoRoot, sources);\n\n  // 4. Optional fine-tuning inside each domain\n  const everything = await p.confirm({\n    message: 'Sync everything inside the selected domains? (No = pick individual skills, agents, files…)',\n    initialValue: true,\n  });\n  cancelled(everything);\n\n  const toolNames = tools.map((t) => t.name);\n  for (const source of sources) {\n    const domains = pickedDomains.get(source.name) ?? [];\n    source.domains = [];\n    for (const domain of domains) {\n      const include = everything\n        ? undefined\n        : await promptInclude(resolveSourcePath(repoRoot, source), source.name, domain, toolNames);\n      source.domains.push(include ? { name: domain, include } : { name: domain });\n    }\n  }\n  // Sources without any picked domain contribute nothing — drop them.\n  const activeSources = sources.filter((s) => (s.domains?.length ?? 0) > 0);\n  for (const s of sources) {\n    if (!activeSources.includes(s)) p.log.warn(`${s.name}: no domains selected — source dropped from config.`);\n  }\n\n  const config: BridgeConfig = { version: VERSION, tools, sources: activeSources };\n  await saveConfig(repoRoot, config);\n  p.log.success('Saved .agent-bridge/config.yml — commit this file.');\n\n  // 5. Git hooks\n  if (isInGitRepo(repoRoot)) {\n    const installHooks = await p.confirm({\n      message: 'Install git hooks to auto-sync after checkout/merge?',\n      initialValue: false,\n    });\n    if (!p.isCancel(installHooks) && installHooks) {\n      await maybeInstallHooks(repoRoot, opts?.force === true);\n    }\n  }\n\n  // 6. Sync right away\n  const syncNow = await p.confirm({ message: 'Run `agent-bridge sync` now?', initialValue: true });\n  if (!p.isCancel(syncNow) && syncNow) {\n    await syncCommand(repoRoot);\n    return;\n  }\n  p.outro('Done! Run `agent-bridge sync` whenever you want to pull the latest features.');\n}\n","import * as p from '@clack/prompts';\nimport {\n  bridgeDir,\n  configExists,\n  loadConfig,\n  writeOptOutMarker,\n  OPT_OUT_MARKER,\n  type BridgeConfig,\n} from '../lib/config.js';\nimport { removeDir, dirExists } from '../lib/fs.js';\nimport { findRepoRoot, isInGitRepo, removeGitHooks } from '../lib/git.js';\nimport { reconcileFeatures, reconcileToolRootEntries } from '../lib/sync.js';\n\nfunction summarizeTools(config: BridgeConfig): string {\n  return config.tools.map((t) => t.name).join(', ');\n}\n\nexport async function optOutCommand(\n  cwd?: string,\n  _opts?: unknown\n): Promise<void> {\n  const repoRoot = cwd ?? findRepoRoot();\n\n  p.intro('Agent Bridge Opt-out');\n\n  const hasConfig = await configExists(repoRoot);\n  let config: BridgeConfig | undefined;\n\n  if (hasConfig) {\n    config = await loadConfig(repoRoot);\n  }\n\n  const toolSummary = config ? summarizeTools(config) : 'unknown (no config found)';\n  p.log.info(\n    `Non-interactive opt-out: removing Agent Bridge managed files for tools: ${toolSummary}`\n  );\n\n  const s = p.spinner();\n\n  let featureErrors = 0;\n  let toolRootErrors = 0;\n\n  if (config) {\n    s.start('Removing synced Agent Bridge files…');\n\n    const featureResult = await reconcileFeatures(repoRoot, config, []);\n    const toolRootResult = await reconcileToolRootEntries(repoRoot, config, []);\n\n    featureErrors = featureResult.errors.length;\n    toolRootErrors = toolRootResult.errors.length;\n\n    s.stop('Synced files removed');\n\n    p.log.info(\n      `Features removed: ${featureResult.removed} (errors: ${featureErrors})`\n    );\n    p.log.info(\n      `Tool-root files removed: ${toolRootResult.removed} (errors: ${toolRootErrors})`\n    );\n    p.log.info('Root files are not removed by opt-out (manifest-only cleanup).');\n\n    for (const err of featureResult.errors) {\n      p.log.error(`${err.path}: ${err.error}`);\n    }\n    for (const err of toolRootResult.errors) {\n      p.log.error(`${err.path}: ${err.error}`);\n    }\n  } else {\n    p.log.warn('No .agent-bridge/config.yml found. Skipping synced file cleanup.');\n  }\n\n  s.start('Removing Agent Bridge git hooks…');\n  const removedHooks = isInGitRepo(repoRoot) ? await removeGitHooks(repoRoot) : [];\n  s.stop('Hooks cleanup complete');\n\n  if (removedHooks.length > 0) {\n    p.log.info(`Removed hooks: ${removedHooks.join(', ')}`);\n  } else if (isInGitRepo(repoRoot)) {\n    p.log.info('No Agent Bridge hooks found.');\n  } else {\n    p.log.info('Not a git repository; hook cleanup skipped.');\n  }\n\n  s.start('Removing .agent-bridge directory…');\n  const bridgePath = bridgeDir(repoRoot);\n  if (await dirExists(bridgePath)) {\n    await removeDir(bridgePath);\n    s.stop('.agent-bridge removed');\n  } else {\n    s.stop('.agent-bridge not found');\n  }\n\n  // Write a tombstone that survives `.agent-bridge/` deletion so a postinstall\n  // guard (or a manual init/sync) won't silently reinstall on the next install.\n  await writeOptOutMarker(repoRoot);\n  p.log.info(\n    `Wrote ${OPT_OUT_MARKER} (gitignored, local to this machine). ` +\n      'Force-add it (`git add -f`) for a repo-wide opt-out. ' +\n      'Run `agent-bridge init --force` to re-enable.'\n  );\n\n  const totalErrors = featureErrors + toolRootErrors;\n  if (totalErrors > 0) {\n    p.outro(`Opt-out completed with ${totalErrors} cleanup error(s).`);\n    process.exit(1);\n  }\n\n  p.outro('Opt-out complete. Agent Bridge is removed from this repository.');\n}\n","#!/usr/bin/env node\n\nimport { resolve } from 'node:path';\nimport { stat } from 'node:fs/promises';\nimport { Command } from 'commander';\nimport { initCommand } from './commands/init.js';\nimport { syncCommand } from './commands/sync.js';\nimport { optOutCommand } from './commands/opt-out.js';\nimport { VERSION } from './lib/version.js';\n\nexport interface CliOptions {\n  cwd?: string;\n  force?: boolean;\n  // Init-specific options (ignored by other commands)\n  domains?: string;\n  tools?: string;\n  source?: string[];\n  hooks?: boolean;\n}\n\nasync function assertCwdExists(cwd: string): Promise<void> {\n  try {\n    const s = await stat(cwd);\n    if (!s.isDirectory()) {\n      throw new Error(`--cwd path is not a directory: ${cwd}`);\n    }\n  } catch (err) {\n    if ((err as NodeJS.ErrnoException).code === 'ENOENT') {\n      throw new Error(`--cwd path does not exist: ${cwd}`);\n    }\n    throw err;\n  }\n}\n\nasync function withCwdValidation(\n  action: (cwd?: string, opts?: CliOptions) => Promise<void>\n): Promise<(opts: CliOptions) => Promise<void>> {\n  return async (opts: CliOptions) => {\n    if (opts.cwd) {\n      opts.cwd = resolve(opts.cwd);\n      await assertCwdExists(opts.cwd);\n    }\n    await action(opts.cwd, opts);\n  };\n}\n\nfunction collect(value: string, previous: string[]): string[] {\n  previous.push(value);\n  return previous;\n}\n\nconst program = new Command()\n  .name('agent-bridge')\n  .description('Manage AI tool configurations from multiple sources')\n  .version(VERSION, '-v, --version');\n\nprogram\n  .command('init')\n  .description('Set up Agent Bridge: pick tools, sources and domains (creates .agent-bridge/config.yml)')\n  .option('--cwd <path>', 'Override the working directory')\n  .option('--force', 'Overwrite existing non-Agent-Bridge git hooks')\n  .option('--domains <list>', 'Comma-separated domain list (default: every domain found in each source)')\n  .option('--tools <list>', 'Comma-separated tool names (cursor,vscode,claude) or name:folder pairs')\n  .option('-s, --source <url>', 'Source URL or path (repeatable, append #branch for branch)', collect, [])\n  .option('--hooks', 'Auto-install git hooks without prompting')\n  .action(await withCwdValidation(initCommand));\n\nprogram\n  .command('sync')\n  .description('Fetch the latest sources and sync features into your tool folders')\n  .option('--cwd <path>', 'Override the working directory')\n  .action(await withCwdValidation(syncCommand));\n\n// `update` was merged into `sync` (0.14.0). Kept hidden so hooks installed by\n// older versions (`agent-bridge update && agent-bridge sync`) keep working.\nprogram\n  .command('update', { hidden: true })\n  .option('--cwd <path>', 'Override the working directory')\n  .action(\n    await withCwdValidation(async (cwd) => {\n      console.error('`agent-bridge update` is deprecated — running `agent-bridge sync` instead (it fetches sources too).');\n      await syncCommand(cwd);\n    })\n  );\n\nprogram\n  .command('opt-out')\n  .description('Remove Agent Bridge hooks, synced files, and .agent-bridge state')\n  .option('--cwd <path>', 'Override the working directory')\n  .action(await 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[]) {\n        if (seen.has(d.name)) {\n          ctx.addIssue({\n            code: z.ZodIssueCode.custom,\n            message: `Duplicate domain '${d.name}' in source '${s.name}'`,\n            path: ['sources', i, 'domains'],\n          });\n        }\n        seen.add(d.name);\n      }\n    });\n\n    // Check unique tool names\n    const toolNames = new Set<string>();\n    const toolFolders = new Set<string>();\n    data.tools.forEach((t, i) => {\n      if (toolNames.has(t.name)) {\n        ctx.addIssue({\n          code: z.ZodIssueCode.custom,\n          message: `Duplicate tool name: '${t.name}'`,\n          path: ['tools', i, 'name'],\n        });\n      }\n      toolNames.add(t.name);\n      if (toolFolders.has(t.folder)) {\n        ctx.addIssue({\n          code: z.ZodIssueCode.custom,\n          message: `Duplicate tool folder: '${t.folder}'`,\n          path: ['tools', i, 'folder'],\n        });\n      }\n      toolFolders.add(t.folder);\n    });\n\n    // Check unique source names and branch validity\n    const sourceNames = new Set<string>();\n    data.sources.forEach((s, i) => {\n      if (sourceNames.has(s.name)) {\n        ctx.addIssue({\n          code: z.ZodIssueCode.custom,\n          message: `Duplicate source name: '${s.name}'`,\n          path: ['sources', i, 'name'],\n        });\n      }\n      sourceNames.add(s.name);\n\n      const isRemote =\n        s.source.startsWith('https://') ||\n        s.source.startsWith('http://') ||\n        s.source.startsWith('file://') ||\n        /^[\\w.-]+@[\\w.-]+:/.test(s.source);\n\n      if (s.branch && !isRemote) {\n        ctx.addIssue({\n          code: z.ZodIssueCode.custom,\n          message: \"'branch' is only valid for remote sources\",\n          path: ['sources', i, 'branch'],\n        });\n      }\n      if (!isRemote && !isAbsolute(s.source)) {\n        ctx.addIssue({\n          code: z.ZodIssueCode.custom,\n          message: 'Local source paths must be absolute',\n          path: ['sources', i, 'source'],\n        });\n      }\n    });\n  });\n\n// ---------------------------------------------------------------------------\n// Types (inferred from Zod schemas)\n// ---------------------------------------------------------------------------\n\nexport type SourceType = 'git-https' | 'git-ssh' | 'local';\nexport type ToolConfig = z.infer<typeof toolConfigSchema>;\nexport type DomainConfig = z.infer<typeof domainObjectSchema>;\nexport type SourceConfig = z.infer<typeof sourceConfigSchema> & { domains?: DomainConfig[] };\nexport type BridgeConfig = z.infer<typeof bridgeConfigSchema>;\n\n// ---------------------------------------------------------------------------\n// Domain resolution & include filtering\n// ---------------------------------------------------------------------------\n\n/**\n * Domains to scan for a source: its own `domains`, falling back to the legacy\n * top-level `domains` list (everything included).\n */\nexport function sourceDomains(config: BridgeConfig, source: SourceConfig): DomainConfig[] {\n  if (source.domains) return source.domains;\n  return (config.domains ?? []).map((name) => ({ name }));\n}\n\n/**\n * Whether `relPath` (relative to the domain root, e.g. `skills`,\n * `skills/deploy`, `AGENTS.md`) is selected by the domain's `include` list.\n * No `include` means everything is selected.\n */\nexport function isIncluded(domain: DomainConfig, relPath: string): boolean {\n  const inc = domain.include;\n  if (!inc) return true;\n  return inc.some((entry) => entry === relPath || relPath.startsWith(entry + '/') || entry.startsWith(relPath + '/'));\n}\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\nexport const BRIDGE_DIR = '.agent-bridge';\nexport const CONFIG_FILENAME = 'config.yml';\n\n/**\n * Tombstone written by `opt-out`. It lives inside `.agent-bridge/` so it's\n * gitignored by default (the directory's `.gitignore` ignores everything but\n * `config.yml`), keeping opt-out local to a machine. `init`/`sync` honor it so\n * a `postinstall` guard doesn't silently reinstall Agent Bridge on the next\n * `npm install`. Force-add it (`git add -f`) to commit a repo-wide opt-out.\n */\nexport const OPT_OUT_MARKER = join(BRIDGE_DIR, 'optout');\n\n// ---------------------------------------------------------------------------\n// Source type detection\n// ---------------------------------------------------------------------------\n\nexport function detectSourceType(source: string): SourceType {\n  if (\n    source.startsWith('https://') ||\n    source.startsWith('http://') ||\n    source.startsWith('file://')\n  ) {\n    return 'git-https';\n  }\n  if (/^[\\w.-]+@[\\w.-]+:/.test(source)) {\n    return 'git-ssh';\n  }\n  return 'local';\n}\n\nexport function isRemoteSource(source: string): boolean {\n  const type = detectSourceType(source);\n  return type === 'git-https' || type === 'git-ssh';\n}\n\n// ---------------------------------------------------------------------------\n// Paths\n// ---------------------------------------------------------------------------\n\nexport function bridgeDir(repoRoot: string): string {\n  return join(repoRoot, BRIDGE_DIR);\n}\n\nexport function configPath(repoRoot: string): string {\n  return join(repoRoot, BRIDGE_DIR, CONFIG_FILENAME);\n}\n\nexport function sourceDir(repoRoot: string, sourceName: string): string {\n  return join(repoRoot, BRIDGE_DIR, sourceName);\n}\n\nexport function optOutMarkerPath(repoRoot: string): string {\n  return join(repoRoot, OPT_OUT_MARKER);\n}\n\n/** Whether an opt-out tombstone is present at the repo root. */\nexport async function isOptedOut(repoRoot: string): Promise<boolean> {\n  try {\n    await access(optOutMarkerPath(repoRoot));\n    return true;\n  } catch {\n    return false;\n  }\n}\n\n/**\n * Write the opt-out tombstone inside `.agent-bridge/`. Recreates the directory\n * (opt-out deletes it) and its `.gitignore` so the marker is ignored by default.\n */\nexport async function writeOptOutMarker(repoRoot: string): Promise<void> {\n  const dir = bridgeDir(repoRoot);\n  await mkdir(dir, { recursive: true });\n  // Same ignore rules init/sync write: ignore everything but the config.\n  await writeFile(\n    join(dir, '.gitignore'),\n    ['# Ignore cloned sources', '*', '!config.yml', '!.gitignore'].join('\\n') + '\\n',\n    'utf-8'\n  );\n  await writeFile(\n    optOutMarkerPath(repoRoot),\n    '# Agent Bridge opt-out marker. Remove this file (or run `agent-bridge init --force`) to re-enable.\\n',\n    'utf-8'\n  );\n}\n\n/** Remove the opt-out tombstone if present (idempotent). */\nexport async function removeOptOutMarker(repoRoot: string): Promise<void> {\n  await rm(optOutMarkerPath(repoRoot), { force: true });\n}\n\n// ---------------------------------------------------------------------------\n// Config I/O\n// ---------------------------------------------------------------------------\n\nexport async function configExists(repoRoot: string): Promise<boolean> {\n  try {\n    await access(configPath(repoRoot));\n    return true;\n  } catch {\n    return false;\n  }\n}\n\nexport async function loadConfig(repoRoot: string): Promise<BridgeConfig> {\n  const raw = await readFile(configPath(repoRoot), 'utf-8');\n  const data = yaml.load(raw);\n\n  const result = bridgeConfigSchema.safeParse(data);\n  if (!result.success) {\n    const errors = result.error.issues.map(\n      (i) => `${i.path.join('.')}: ${i.message}`\n    );\n    throw new Error(`Invalid config: ${errors.join('; ')}`);\n  }\n\n  return result.data;\n}\n\nexport async function saveConfig(\n  repoRoot: string,\n  config: BridgeConfig\n): Promise<void> {\n  const dir = bridgeDir(repoRoot);\n  await mkdir(dir, { recursive: true });\n  const content = yaml.dump(config, { lineWidth: -1, noRefs: true, skipInvalid: true });\n  await writeFile(configPath(repoRoot), content, 'utf-8');\n}\n\n// ---------------------------------------------------------------------------\n// Validation (legacy interface for tests)\n// ---------------------------------------------------------------------------\n\nexport interface ConfigValidationResult {\n  ok: boolean;\n  errors: string[];\n}\n\nexport function validateConfig(config: unknown): ConfigValidationResult {\n  const result = bridgeConfigSchema.safeParse(config);\n  if (result.success) {\n    return { ok: true, errors: [] };\n  }\n  const errors = result.error.issues.map(\n    (i) => `${i.path.join('.')}: ${i.message}`\n  );\n  return { ok: false, errors };\n}\n","import { execSync } from 'node:child_process';\nimport { mkdir, writeFile, chmod, readFile, access } from 'node:fs/promises';\nimport { join } from 'node:path';\n\nexport function findRepoRoot(): string {\n  try {\n    return execSync('git rev-parse --show-toplevel', {\n      encoding: 'utf-8',\n      stdio: 'pipe',\n    }).trim();\n  } catch {\n    return process.cwd();\n  }\n}\n\n/**\n * Check if a directory is inside a Git repository.\n */\nexport function isInGitRepo(cwd?: string): boolean {\n  try {\n    execSync('git rev-parse --is-inside-work-tree', {\n      encoding: 'utf-8',\n      stdio: 'pipe',\n      cwd,\n    });\n    return true;\n  } catch {\n    return false;\n  }\n}\n\n/**\n * Get the path to the .git/hooks directory.\n */\nexport function getGitHooksDir(repoRoot: string): string {\n  return join(repoRoot, '.git', 'hooks');\n}\n\n/**\n * The hook names that Agent Bridge will install.\n */\nexport const AGENT_BRIDGE_HOOKS = ['post-checkout', 'post-merge'] as const;\nexport type AgentBridgeHook = (typeof AGENT_BRIDGE_HOOKS)[number];\n\n/**\n * Marker comment to identify Agent Bridge hooks.\n */\nconst HOOK_MARKER = '# agent-bridge-hook';\n\n/**\n * Generate the hook script content.\n * Runs sync in the background, logging to `.agent-bridge/hook.log`\n * (trimmed to the last ~200 lines) so failures are diagnosable.\n */\nexport function generateHookScript(): string {\n  return `#!/bin/sh\n${HOOK_MARKER}\n# This hook was installed by Agent Bridge.\n# It runs 'agent-bridge sync' in the background to keep your AI agent\n# configurations up to date.\n\nREPO_ROOT=\"$(git rev-parse --show-toplevel 2>/dev/null)\"\nLOG_DIR=\"\\${REPO_ROOT:-.}/.agent-bridge\"\nLOG_FILE=\"\\${LOG_DIR}/hook.log\"\n\nmkdir -p \"\\$LOG_DIR\" 2>/dev/null\n\n(\n  # Wait a moment for git to finish\n  sleep 1\n\n  {\n    echo \"--- $(date '+%Y-%m-%dT%H:%M:%S%z') agent-bridge hook ---\"\n    if command -v agent-bridge >/dev/null 2>&1; then\n      agent-bridge sync\n    elif command -v npx >/dev/null 2>&1; then\n      npx @sofatutor/agent-bridge sync\n    else\n      echo \"agent-bridge not found (install globally or ensure npx is available)\"\n    fi\n  } >>\"\\$LOG_FILE\" 2>&1\n\n  # Keep the log from growing without bound.\n  if [ -f \"\\$LOG_FILE\" ]; then\n    tail -n 200 \"\\$LOG_FILE\" >\"\\$LOG_FILE.tmp\" && mv \"\\$LOG_FILE.tmp\" \"\\$LOG_FILE\"\n  fi\n) </dev/null >/dev/null 2>&1 &\n`;\n}\n\n/**\n * Check if a hook file contains the Agent Bridge marker.\n */\nexport async function hasAgentBridgeHook(hookPath: string): Promise<boolean> {\n  try {\n    const content = await readFile(hookPath, 'utf-8');\n    return content.includes(HOOK_MARKER);\n  } catch {\n    return false;\n  }\n}\n\n/**\n * Check if a hook file exists.\n */\nasync function hookExists(hookPath: string): Promise<boolean> {\n  try {\n    await access(hookPath);\n    return true;\n  } catch {\n    return false;\n  }\n}\n\nexport interface InstallHooksResult {\n  installed: AgentBridgeHook[];\n  skipped: AgentBridgeHook[];\n  errors: Array<{ hook: AgentBridgeHook; error: string }>;\n}\n\n/**\n * Install Agent Bridge git hooks in the repository.\n * \n * @param repoRoot - The root of the git repository\n * @param force - If true, overwrite existing hooks that don't have the marker\n * @returns Result with installed, skipped, and errored hooks\n */\nexport async function installGitHooks(\n  repoRoot: string,\n  force = false\n): Promise<InstallHooksResult> {\n  const result: InstallHooksResult = {\n    installed: [],\n    skipped: [],\n    errors: [],\n  };\n\n  if (!isInGitRepo(repoRoot)) {\n    for (const hook of AGENT_BRIDGE_HOOKS) {\n      result.errors.push({ hook, error: 'Not a git repository' });\n    }\n    return result;\n  }\n\n  const hooksDir = getGitHooksDir(repoRoot);\n\n  // Ensure hooks directory exists\n  try {\n    await mkdir(hooksDir, { recursive: true });\n  } catch (err) {\n    for (const hook of AGENT_BRIDGE_HOOKS) {\n      result.errors.push({ hook, error: `Failed to create hooks directory: ${err}` });\n    }\n    return result;\n  }\n\n  const hookContent = generateHookScript();\n\n  for (const hookName of AGENT_BRIDGE_HOOKS) {\n    const hookPath = join(hooksDir, hookName);\n\n    try {\n      const exists = await hookExists(hookPath);\n      \n      if (exists) {\n        const hasMarker = await hasAgentBridgeHook(hookPath);\n        \n        if (hasMarker) {\n          // Already installed, update it\n          await writeFile(hookPath, hookContent, 'utf-8');\n          await chmod(hookPath, 0o755);\n          result.installed.push(hookName);\n        } else if (force) {\n          // Force overwrite\n          await writeFile(hookPath, hookContent, 'utf-8');\n          await chmod(hookPath, 0o755);\n          result.installed.push(hookName);\n        } else {\n          // Skip - existing hook without marker\n          result.skipped.push(hookName);\n        }\n      } else {\n        // Create new hook\n        await writeFile(hookPath, hookContent, 'utf-8');\n        await chmod(hookPath, 0o755);\n        result.installed.push(hookName);\n      }\n    } catch (err) {\n      result.errors.push({ hook: hookName, error: String(err) });\n    }\n  }\n\n  return result;\n}\n\n/**\n * Rewrite hooks that Agent Bridge installed earlier with the current script.\n * Hooks we did not install (no marker) and missing hooks are left alone.\n */\nexport async function refreshGitHooks(repoRoot: string): Promise<AgentBridgeHook[]> {\n  const refreshed: AgentBridgeHook[] = [];\n  if (!isInGitRepo(repoRoot)) return refreshed;\n\n  const hooksDir = getGitHooksDir(repoRoot);\n  for (const hookName of AGENT_BRIDGE_HOOKS) {\n    const hookPath = join(hooksDir, hookName);\n    if (!(await hasAgentBridgeHook(hookPath))) continue;\n    await writeFile(hookPath, generateHookScript(), 'utf-8');\n    await chmod(hookPath, 0o755);\n    refreshed.push(hookName);\n  }\n  return refreshed;\n}\n\n/**\n * Remove Agent Bridge git hooks from the repository.\n * Only removes hooks that have the Agent Bridge marker.\n */\nexport async function removeGitHooks(repoRoot: string): Promise<AgentBridgeHook[]> {\n  const removed: AgentBridgeHook[] = [];\n\n  if (!isInGitRepo(repoRoot)) {\n    return removed;\n  }\n\n  const hooksDir = getGitHooksDir(repoRoot);\n\n  for (const hookName of AGENT_BRIDGE_HOOKS) {\n    const hookPath = join(hooksDir, hookName);\n    \n    try {\n      if (await hasAgentBridgeHook(hookPath)) {\n        const { unlink } = await import('node:fs/promises');\n        await unlink(hookPath);\n        removed.push(hookName);\n      }\n    } catch {\n      // Ignore errors\n    }\n  }\n\n  return removed;\n}\n","import { readdir, copyFile, stat } from 'node:fs/promises';\nimport { join, dirname } from 'node:path';\nimport fsExtra from 'fs-extra';\n\nconst { pathExists, remove, outputFile, readFile: fsReadFile, ensureDir } = fsExtra;\n\n/** Name of the marker file placed inside every synced feature folder. */\nexport const MARKER_FILENAME = '.agentbridge';\n\nexport async function dirExists(p: string): Promise<boolean> {\n  try {\n    const s = await stat(p);\n    return s.isDirectory();\n  } catch {\n    return false;\n  }\n}\n\nexport async function fileExists(p: string): Promise<boolean> {\n  return pathExists(p);\n}\n\nexport async function listFilesRecursive(dir: string): Promise<string[]> {\n  const files: string[] = [];\n  const entries = await readdir(dir, { withFileTypes: true });\n  for (const entry of entries) {\n    // Skip symlinks entirely: never follow them out of the source tree,\n    // and don't attempt to replicate them (keeps the destination simple\n    // and avoids symlink-escape vulnerabilities).\n    if (entry.isSymbolicLink()) continue;\n    // Skip Agent Bridge marker files that may exist in source repos.\n    if (entry.name === MARKER_FILENAME) continue;\n    if (entry.isDirectory()) {\n      const subFiles = await listFilesRecursive(join(dir, entry.name));\n      files.push(...subFiles.map((f) => join(entry.name, f)));\n    } else if (entry.isFile()) {\n      files.push(entry.name);\n    }\n  }\n  return files;\n}\n\n/**\n * Copy all files from `srcDir` into `destDir`, preserving nested structure.\n * Overwrites existing files. Creates directories as needed.\n */\nexport async function copyDirContents(srcDir: string, destDir: string): Promise<void> {\n  const files = await listFilesRecursive(srcDir);\n  for (const relFile of files) {\n    const srcFile = join(srcDir, relFile);\n    const destFile = join(destDir, relFile);\n    await ensureDir(dirname(destFile));\n    await copyFile(srcFile, destFile);\n  }\n}\n\n/**\n * Write the `.agentbridge` marker file into a feature folder.\n */\nexport async function writeMarker(featureDir: string): Promise<void> {\n  await outputFile(join(featureDir, MARKER_FILENAME), '');\n}\n\n/**\n * Check whether a directory contains the `.agentbridge` marker.\n */\nexport async function hasMarker(featureDir: string): Promise<boolean> {\n  return pathExists(join(featureDir, MARKER_FILENAME));\n}\n\n/**\n * Remove a directory and all its contents.\n */\nexport async function removeDir(dir: string): Promise<void> {\n  await remove(dir);\n}\n\n/**\n * Remove a single file.\n */\nexport async function removeFile(filePath: string): Promise<void> {\n  await remove(filePath);\n}\n\n// ---------------------------------------------------------------------------\n// Manifest helpers (single .agentbridge per feature-type directory)\n// ---------------------------------------------------------------------------\n\n/**\n * Read the manifest file in a directory. Returns list of managed entries.\n * Entries ending with '/' are folders, others are files.\n */\nexport async function readManifest(dir: string): Promise<string[]> {\n  const manifestPath = join(dir, MARKER_FILENAME);\n  try {\n    const content = await fsReadFile(manifestPath, 'utf-8');\n    return content.split('\\n').filter((line) => line.trim().length > 0);\n  } catch {\n    return [];\n  }\n}\n\n/**\n * Check if an entry in the manifest is a folder (ends with /).\n */\nexport function isManifestFolder(entry: string): boolean {\n  return entry.endsWith('/');\n}\n\n/**\n * Get the base name from a manifest entry (strips trailing / for folders).\n */\nexport function manifestEntryName(entry: string): string {\n  return entry.endsWith('/') ? entry.slice(0, -1) : entry;\n}\n\n/**\n * Write a manifest file listing managed entries.\n */\nexport async function writeManifest(dir: string, entries: string[]): Promise<void> {\n  const manifestPath = join(dir, MARKER_FILENAME);\n  const content = entries.length > 0 ? entries.join('\\n') + '\\n' : '';\n  await outputFile(manifestPath, content);\n}\n\n/**\n * Add an entry to the manifest. Creates manifest if it doesn't exist.\n * Use trailing '/' for folders.\n */\nexport async function addToManifest(dir: string, entry: string): Promise<void> {\n  const existing = await readManifest(dir);\n  if (!existing.includes(entry)) {\n    existing.push(entry);\n    await writeManifest(dir, existing);\n  }\n}\n\n/**\n * Remove an entry from the manifest.\n * Deletes the manifest file entirely if it becomes empty.\n */\nexport async function removeFromManifest(dir: string, entry: string): Promise<void> {\n  const existing = await readManifest(dir);\n  const updated = existing.filter((e) => e !== entry);\n  if (updated.length !== existing.length) {\n    if (updated.length === 0) {\n      // Remove manifest file when empty\n      await remove(join(dir, MARKER_FILENAME));\n    } else {\n      await writeManifest(dir, updated);\n    }\n  }\n}\n\n/**\n * Check if an entry is tracked in the manifest.\n */\nexport async function isInManifest(dir: string, entry: string): Promise<boolean> {\n  const entries = await readManifest(dir);\n  return entries.includes(entry);\n}\n","import { execFileSync } from 'node:child_process';\nimport { mkdir, readdir, rm, writeFile, access } from 'node:fs/promises';\nimport { join, isAbsolute, resolve } from 'node:path';\nimport {\n  type SourceConfig,\n  type BridgeConfig,\n  bridgeDir,\n  sourceDir,\n  isRemoteSource,\n} from './config.js';\nimport { dirExists } from './fs.js';\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/**\n * Marker file written inside every directory Agent Bridge manages under\n * `.agent-bridge/`. Used to gate destructive cleanup so we never delete\n * user-placed content.\n */\nconst SOURCE_MARKER = '.agent-bridge-managed';\n\nfunction git(args: string[], cwd?: string): string {\n  return execFileSync('git', args, {\n    cwd,\n    encoding: 'utf-8',\n    stdio: 'pipe',\n  }).trim();\n}\n\n/**\n * Branch names must not contain shell metacharacters or leading dashes\n * (which could be mistaken for git flags). Conservative but safe.\n */\nfunction assertSafeBranch(branch: string, sourceName: string): void {\n  if (!/^[A-Za-z0-9._/-]+$/.test(branch) || branch.startsWith('-')) {\n    throw new Error(\n      `Source '${sourceName}': invalid branch name '${branch}'. ` +\n        `Branch must match [A-Za-z0-9._/-]+ and not start with '-'.`\n    );\n  }\n}\n\n/**\n * Reject source URLs that begin with '-' to prevent them being interpreted\n * as CLI flags by git.\n */\nfunction assertSafeSourceUrl(source: string, sourceName: string): void {\n  if (source.startsWith('-')) {\n    throw new Error(\n      `Source '${sourceName}': URL must not start with '-' (got '${source}').`\n    );\n  }\n}\n\nasync function writeSourceMarker(dest: string): Promise<void> {\n  await writeFile(\n    join(dest, SOURCE_MARKER),\n    'This directory is managed by agent-bridge. Do not edit manually.\\n',\n    'utf-8'\n  );\n}\n\nasync function hasSourceMarker(dir: string): Promise<boolean> {\n  try {\n    await access(join(dir, SOURCE_MARKER));\n    return true;\n  } catch {\n    return false;\n  }\n}\n\n// ---------------------------------------------------------------------------\n// Git operations for a single remote source\n// ---------------------------------------------------------------------------\n\nexport async function cloneSource(\n  repoRoot: string,\n  source: SourceConfig\n): Promise<void> {\n  assertSafeSourceUrl(source.source, source.name);\n  if (source.branch) assertSafeBranch(source.branch, source.name);\n\n  const dest = sourceDir(repoRoot, source.name);\n\n  await mkdir(bridgeDir(repoRoot), { recursive: true });\n\n  const args = ['clone', '--depth', '1'];\n  if (source.branch) {\n    args.push('--single-branch', '--branch', source.branch);\n  }\n  // '--' terminates option parsing so the URL / dest can never be read as flags.\n  args.push('--', source.source, dest);\n\n  execFileSync('git', args, { stdio: 'pipe' });\n\n  await writeSourceMarker(dest);\n}\n\nexport async function fetchSource(\n  repoRoot: string,\n  source: SourceConfig\n): Promise<void> {\n  assertSafeSourceUrl(source.source, source.name);\n  if (source.branch) assertSafeBranch(source.branch, source.name);\n\n  const dest = sourceDir(repoRoot, source.name);\n\n  git(['fetch', '--prune', 'origin'], dest);\n\n  if (source.branch) {\n    const currentBranch = git(['rev-parse', '--abbrev-ref', 'HEAD'], dest);\n    if (currentBranch !== source.branch) {\n      // Branch changed in config — ensure we have the ref then check it out.\n      // A shallow --single-branch clone only has one branch, so fetch the\n      // new branch explicitly before checkout.\n      try {\n        git(['fetch', '--depth', '1', 'origin', source.branch], dest);\n      } catch {\n        // If fetch fails, let checkout surface the real error.\n      }\n      git(['checkout', source.branch], dest);\n    }\n  }\n\n  try {\n    git(['pull', '--ff-only'], dest);\n  } catch {\n    // pull may fail for tags or detached HEAD — that's okay after fetch\n  }\n\n  // Refresh marker (in case the directory was restored from backup without it).\n  await writeSourceMarker(dest);\n}\n\n// ---------------------------------------------------------------------------\n// Local source resolution\n// ---------------------------------------------------------------------------\n\nexport function resolveLocalSource(\n  repoRoot: string,\n  source: SourceConfig\n): string {\n  const raw = source.source;\n  if (isAbsolute(raw)) return raw;\n  return resolve(repoRoot, raw);\n}\n\n// ---------------------------------------------------------------------------\n// Resolve the effective filesystem path for a source\n// ---------------------------------------------------------------------------\n\nexport function resolveSourcePath(\n  repoRoot: string,\n  source: SourceConfig\n): string {\n  if (isRemoteSource(source.source)) {\n    return sourceDir(repoRoot, source.name);\n  }\n  return resolveLocalSource(repoRoot, source);\n}\n\n// ---------------------------------------------------------------------------\n// Sync all sources\n// ---------------------------------------------------------------------------\n\nexport interface SourceSyncResult {\n  name: string;\n  action: 'cloned' | 'updated' | 'local';\n  error?: string;\n}\n\nexport async function syncSource(\n  repoRoot: string,\n  source: SourceConfig\n): Promise<SourceSyncResult> {\n  if (!isRemoteSource(source.source)) {\n    const resolved = resolveLocalSource(repoRoot, source);\n    if (!(await dirExists(resolved))) {\n      return {\n        name: source.name,\n        action: 'local',\n        error: `Local source path does not exist: ${resolved}\\n  Update the path in .agent-bridge/config.yml or run \"agent-bridge init\" to reconfigure.`,\n      };\n    }\n    return { name: source.name, action: 'local' };\n  }\n\n  const dest = sourceDir(repoRoot, source.name);\n\n  if (await dirExists(dest)) {\n    try {\n      await fetchSource(repoRoot, source);\n      return { name: source.name, action: 'updated' };\n    } catch (err) {\n      return {\n        name: source.name,\n        action: 'updated',\n        error: err instanceof Error ? err.message : String(err),\n      };\n    }\n  }\n\n  try {\n    await cloneSource(repoRoot, source);\n    return { name: source.name, action: 'cloned' };\n  } catch (err) {\n    return {\n      name: source.name,\n      action: 'cloned',\n      error: err instanceof Error ? err.message : String(err),\n    };\n  }\n}\n\nexport async function syncAllSources(\n  repoRoot: string,\n  config: BridgeConfig\n): Promise<SourceSyncResult[]> {\n  await ensureBridgeGitignore(repoRoot);\n  return Promise.all(config.sources.map((source) => syncSource(repoRoot, source)));\n}\n\n// ---------------------------------------------------------------------------\n// Ensure .gitignore in .agent-bridge/\n// ---------------------------------------------------------------------------\n\n/**\n * Write a `.gitignore` inside `.agent-bridge/` that ignores cloned source\n * directories (which are nested git repos) while keeping `config.yml` tracked.\n * Without this, git sees the nested repos as gitlinks/submodules and creates\n * phantom dirty-state changes.\n */\nexport async function ensureBridgeGitignore(repoRoot: string): Promise<void> {\n  const bridge = bridgeDir(repoRoot);\n  await mkdir(bridge, { recursive: true });\n\n  const gitignorePath = join(bridge, '.gitignore');\n  const lines = ['# Ignore cloned sources', '*', '!config.yml', '!.gitignore'];\n  const content = lines.join('\\n') + '\\n';\n\n  await writeFile(gitignorePath, content, 'utf-8');\n}\n\n// ---------------------------------------------------------------------------\n// Remove sources that no longer exist in config\n// ---------------------------------------------------------------------------\n\n/**\n * Remove cloned source directories under `.agent-bridge/` that are no longer\n * referenced in config. Only directories carrying the Agent Bridge marker\n * file are eligible for deletion — user-placed content is always preserved.\n *\n * For backwards compatibility with clones created before the marker existed,\n * directories containing a `.git` folder are also treated as stale.\n */\nexport async function removeStaleSourceDirs(\n  repoRoot: string,\n  config: BridgeConfig\n): Promise<string[]> {\n  const bridge = bridgeDir(repoRoot);\n  if (!(await dirExists(bridge))) return [];\n\n  const entries = await readdir(bridge, { withFileTypes: true });\n\n  const configuredNames = new Set(\n    config.sources.filter((s) => isRemoteSource(s.source)).map((s) => s.name)\n  );\n\n  const removed: string[] = [];\n  for (const entry of entries) {\n    if (!entry.isDirectory()) continue;\n    if (configuredNames.has(entry.name)) continue;\n\n    const candidate = join(bridge, entry.name);\n\n    if (\n      (await hasSourceMarker(candidate)) ||\n      (await dirExists(join(candidate, '.git')))\n    ) {\n      await rm(candidate, { recursive: true, force: true });\n      removed.push(entry.name);\n    }\n  }\n\n  return removed;\n}\n","import { readdir } from 'node:fs/promises';\nimport { join } from 'node:path';\nimport { type BridgeConfig, type DomainConfig, sourceDomains, isIncluded } from './config.js';\nimport { dirExists, fileExists } from './fs.js';\nimport { resolveSourcePath } from './sources.js';\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\nconst TOOL_PREFIX_SEPARATOR = '--';\n\nexport interface Feature {\n  name: string;\n  /** Raw feature-type directory name (may contain tool prefix) */\n  type: string;\n  /** Display type with tool prefix stripped (used for destination dir) */\n  displayType: string;\n  source: string;\n  domain: string;\n  /** Absolute path to the feature (directory or file) */\n  absolutePath: string;\n  /** Tool prefix if present (e.g. \"cursor\" from \"cursor--instructions\") */\n  toolPrefix?: string;\n  /** True if feature is a single file, false if a directory */\n  isFile: boolean;\n}\n\nexport interface DuplicateConflict {\n  name: string;\n  type: string;\n  paths: string[];\n}\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\nexport { dirExists } from './fs.js';\n\n\nexport function parseToolPrefix(name: string): {\n  toolPrefix?: string;\n  baseName: string;\n} {\n  const idx = name.indexOf(TOOL_PREFIX_SEPARATOR);\n  if (idx > 0) {\n    return {\n      toolPrefix: name.substring(0, idx),\n      baseName: name.substring(idx + TOOL_PREFIX_SEPARATOR.length),\n    };\n  }\n  return { baseName: name };\n}\n\nexport function featureMatchesTool(\n  feature: Feature,\n  toolName: string\n): boolean {\n  if (!feature.toolPrefix) return true;\n  return feature.toolPrefix === toolName;\n}\n\nexport function featureName(feature: Feature): string {\n  if (feature.toolPrefix) {\n    return parseToolPrefix(feature.name).baseName;\n  }\n  return feature.name;\n}\n\n/** @deprecated Use featureName instead */\n/** @deprecated Use featureName directly */\nexport const syncName = featureName;\n\n// ---------------------------------------------------------------------------\n// Discovery\n// ---------------------------------------------------------------------------\n\n/**\n * Discover all feature types across all sources and domains.\n */\nexport async function discoverFeatureTypes(\n  repoRoot: string,\n  config: BridgeConfig\n): Promise<string[]> {\n  const types = new Set<string>();\n\n  for (const source of config.sources) {\n    const srcPath = resolveSourcePath(repoRoot, source);\n    for (const domain of sourceDomains(config, source)) {\n      const domainDir = join(srcPath, domain.name);\n      if (!(await dirExists(domainDir))) continue;\n\n      const entries = await readdir(domainDir, { withFileTypes: true });\n      for (const entry of entries) {\n        if (entry.isDirectory() && isIncluded(domain, entry.name)) {\n          types.add(entry.name);\n        }\n      }\n    }\n  }\n\n  return [...types].sort();\n}\n\n/**\n * Scan all features across sources × domains × feature types.\n *\n * Structure: `<source-path>/<domain>/<feature-type>/<feature>/` (folder-based)\n *         or `<source-path>/<domain>/<feature-type>/<feature.ext>` (file-based)\n */\nexport async function scanFeatures(\n  repoRoot: string,\n  config: BridgeConfig,\n  featureTypes: string[]\n): Promise<Feature[]> {\n  const features: Feature[] = [];\n\n  for (const source of config.sources) {\n    const srcPath = resolveSourcePath(repoRoot, source);\n\n    for (const domain of sourceDomains(config, source)) {\n      for (const ft of featureTypes) {\n        if (!isIncluded(domain, ft)) continue;\n        const { toolPrefix: typeToolPrefix, baseName: baseType } =\n          parseToolPrefix(ft);\n        const ftDir = join(srcPath, domain.name, ft);\n\n        if (!(await dirExists(ftDir))) continue;\n\n        const entries = await readdir(ftDir, { withFileTypes: true });\n        for (const entry of entries) {\n          const isFile = entry.isFile();\n          const isDir = entry.isDirectory();\n          if (!isFile && !isDir) continue;\n          if (!isIncluded(domain, `${ft}/${entry.name}`)) continue;\n\n          const { toolPrefix: itemToolPrefix } = parseToolPrefix(entry.name);\n          const toolPrefix = itemToolPrefix ?? typeToolPrefix;\n\n          features.push({\n            name: entry.name,\n            type: ft,\n            displayType: baseType,\n            source: source.name,\n            domain: domain.name,\n            absolutePath: join(ftDir, entry.name),\n            toolPrefix,\n            isFile,\n          });\n        }\n      }\n    }\n  }\n\n  return features;\n}\n\n// ---------------------------------------------------------------------------\n// Source browsing (used by `init` to offer domains and their contents)\n// ---------------------------------------------------------------------------\n\n/** Top-level directories of a source that can act as domains. */\nexport async function listDomains(srcPath: string): Promise<string[]> {\n  if (!(await dirExists(srcPath))) return [];\n  const entries = await readdir(srcPath, { withFileTypes: true });\n  return entries\n    .filter((e) => e.isDirectory() && !e.name.startsWith('.') && e.name !== 'node_modules')\n    .map((e) => e.name)\n    .sort();\n}\n\nexport interface DomainContents {\n  /** Feature-type folders and the features inside them. */\n  featureTypes: Array<{ name: string; features: string[] }>;\n  /** Flat files sync would pick up: well-known root files and `<tool>--` files. */\n  files: string[];\n}\n\n/**\n * List what `sync` would consider inside a domain, so the user can pick a\n * subset. `toolNames` filters `<tool>--file` entries to configured tools.\n */\nexport async function listDomainContents(\n  srcPath: string,\n  domain: string,\n  toolNames: Iterable<string>\n): Promise<DomainContents> {\n  const domainDir = join(srcPath, domain);\n  const tools = new Set(toolNames);\n  const result: DomainContents = { featureTypes: [], files: [] };\n  if (!(await dirExists(domainDir))) return result;\n\n  const entries = await readdir(domainDir, { withFileTypes: true });\n  for (const entry of entries) {\n    if (entry.name.startsWith('.')) continue;\n    if (entry.isDirectory()) {\n      const features = (await readdir(join(domainDir, entry.name), { withFileTypes: true }))\n        .filter((f) => (f.isFile() || f.isDirectory()) && !f.name.startsWith('.'))\n        .map((f) => f.name)\n        .sort();\n      result.featureTypes.push({ name: entry.name, features });\n    } else if (entry.isFile()) {\n      const { toolPrefix } = parseToolPrefix(entry.name);\n      if ((ROOT_FILES as readonly string[]).includes(entry.name) || (toolPrefix && tools.has(toolPrefix))) {\n        result.files.push(entry.name);\n      }\n    }\n  }\n  result.featureTypes.sort((a, b) => a.name.localeCompare(b.name));\n  result.files.sort();\n  return result;\n}\n\n/** Type re-export so callers don't need to import config.js just for this. */\nexport type { DomainConfig };\n\n// ---------------------------------------------------------------------------\n// Duplicate detection\n// ---------------------------------------------------------------------------\n\nexport function detectDuplicates(features: Feature[]): DuplicateConflict[] {\n  const byKey = new Map<string, Feature[]>();\n\n  for (const f of features) {\n    const linkName = featureName(f);\n    const key = `${f.displayType}/${linkName}`;\n    const group = byKey.get(key) ?? [];\n    group.push(f);\n    byKey.set(key, group);\n  }\n\n  const conflicts: DuplicateConflict[] = [];\n  for (const [, group] of byKey) {\n    if (group.length > 1) {\n      conflicts.push({\n        name: featureName(group[0]),\n        type: group[0].type,\n        paths: group.map((f) => f.absolutePath),\n      });\n    }\n  }\n\n  return conflicts;\n}\n\n// ---------------------------------------------------------------------------\n// Root file scanning\n// ---------------------------------------------------------------------------\n\n/**\n * Well-known root files that live at the domain root and should be synced to the\n * workspace root. When a source contains `<domain>/AGENTS.md` (etc.), Agent Bridge\n * copies it to the project root.\n */\nexport const ROOT_FILES = ['AGENTS.md', 'CLAUDE.md', 'SYSTEM.md'] as const;\nexport type RootFileName = (typeof ROOT_FILES)[number];\n\nexport interface RootFile {\n  /** The well-known filename (e.g. \"AGENTS.md\") */\n  fileName: RootFileName;\n  /** Source that provides this file */\n  source: string;\n  /** Domain where it was found */\n  domain: string;\n  /** Absolute path to the source file */\n  absolutePath: string;\n}\n\nexport interface RootFileDuplicate {\n  fileName: RootFileName;\n  paths: string[];\n}\n\n/**\n * Scan all sources × domains for well-known root files.\n * Returns one entry per found file.\n */\nexport async function scanRootFiles(\n  repoRoot: string,\n  config: BridgeConfig\n): Promise<RootFile[]> {\n  const found: RootFile[] = [];\n\n  for (const source of config.sources) {\n    const srcPath = resolveSourcePath(repoRoot, source);\n    for (const domain of sourceDomains(config, source)) {\n      for (const fileName of ROOT_FILES) {\n        if (!isIncluded(domain, fileName)) continue;\n        const filePath = join(srcPath, domain.name, fileName);\n        if (await fileExists(filePath)) {\n          found.push({\n            fileName,\n            source: source.name,\n            domain: domain.name,\n            absolutePath: filePath,\n          });\n        }\n      }\n    }\n  }\n\n  return found;\n}\n\n/**\n * Detect duplicate root files (same filename provided by multiple sources/domains).\n */\nexport function detectRootFileDuplicates(\n  rootFiles: RootFile[]\n): RootFileDuplicate[] {\n  const byName = new Map<RootFileName, RootFile[]>();\n  for (const rf of rootFiles) {\n    const group = byName.get(rf.fileName) ?? [];\n    group.push(rf);\n    byName.set(rf.fileName, group);\n  }\n\n  const duplicates: RootFileDuplicate[] = [];\n  for (const [fileName, group] of byName) {\n    if (group.length > 1) {\n      duplicates.push({\n        fileName,\n        paths: group.map((rf) => rf.absolutePath),\n      });\n    }\n  }\n\n  return duplicates;\n}\n\n// ---------------------------------------------------------------------------\n// Tool root file scanning (tool-prefixed flat files at domain level)\n// ---------------------------------------------------------------------------\n\nexport interface ToolRootEntry {\n  /** The tool name this entry targets (e.g. \"pi\") */\n  toolName: string;\n  /** Destination filename (e.g. \"settings.json\" from \"cursor--settings.json\") */\n  name: string;\n  /** Source that provides this entry */\n  source: string;\n  /** Domain where it was found */\n  domain: string;\n  /** Absolute path to the source file */\n  absolutePath: string;\n}\n\nexport interface ToolRootDuplicate {\n  /** The tool name */\n  toolName: string;\n  /** Name of the duplicate entry */\n  name: string;\n  /** Paths where the duplicates were found */\n  paths: string[];\n}\n\n/**\n * Scan all sources × domains for tool-prefixed flat files at the domain level.\n * A file named `cursor--settings.json` targets the tool \"cursor\" with\n * destination filename \"settings.json\".\n */\nexport async function scanToolRootEntries(\n  repoRoot: string,\n  config: BridgeConfig\n): Promise<ToolRootEntry[]> {\n  const entries: ToolRootEntry[] = [];\n  const toolNames = new Set(config.tools.map((t) => t.name));\n\n  for (const source of config.sources) {\n    const srcPath = resolveSourcePath(repoRoot, source);\n    for (const domain of sourceDomains(config, source)) {\n      const domainDir = join(srcPath, domain.name);\n      if (!(await dirExists(domainDir))) continue;\n\n      const domainEntries = await readdir(domainDir, { withFileTypes: true });\n      for (const entry of domainEntries) {\n        if (!entry.isFile() || !isIncluded(domain, entry.name)) continue;\n\n        const { toolPrefix, baseName } = parseToolPrefix(entry.name);\n        if (!toolPrefix || !toolNames.has(toolPrefix)) continue;\n\n        entries.push({\n          toolName: toolPrefix,\n          name: baseName,\n          source: source.name,\n          domain: domain.name,\n          absolutePath: join(domainDir, entry.name),\n        });\n      }\n    }\n  }\n\n  return entries;\n}\n\n/**\n * Detect duplicate tool root entries (same tool + name from multiple sources/domains).\n */\nexport function detectToolRootDuplicates(\n  entries: ToolRootEntry[]\n): ToolRootDuplicate[] {\n  const byKey = new Map<string, ToolRootEntry[]>();\n  for (const entry of entries) {\n    const key = `${entry.toolName}/${entry.name}`;\n    const group = byKey.get(key) ?? [];\n    group.push(entry);\n    byKey.set(key, group);\n  }\n\n  const duplicates: ToolRootDuplicate[] = [];\n  for (const [, group] of byKey) {\n    if (group.length > 1) {\n      duplicates.push({\n        toolName: group[0].toolName,\n        name: group[0].name,\n        paths: group.map((e) => e.absolutePath),\n      });\n    }\n  }\n\n  return duplicates;\n}\n","/**\n * Selection model for a checkbox tree. Pure data, no terminal I/O, so it can\n * be unit-tested; `tree-prompt.ts` renders it with @clack/core.\n */\n\nexport interface TreeNode {\n  label: string;\n  /** Leaf value. Nodes with children have no value of their own. */\n  value?: string;\n  hint?: string;\n  children?: TreeNode[];\n}\n\nexport interface TreeRow {\n  node: TreeNode;\n  depth: number;\n  parent?: TreeNode;\n}\n\nexport type CheckState = 'none' | 'some' | 'all';\n\nexport class TreeModel {\n  readonly selected = new Set<string>();\n  private readonly expanded = new Set<TreeNode>();\n  cursor = 0;\n\n  constructor(\n    readonly roots: TreeNode[],\n    opts: { expandDepth?: number; initialSelected?: Iterable<string> } = {}\n  ) {\n    const depth = opts.expandDepth ?? 1;\n    const expand = (nodes: TreeNode[], d: number) => {\n      if (d >= depth) return;\n      for (const n of nodes) {\n        if (n.children?.length) {\n          this.expanded.add(n);\n          expand(n.children, d + 1);\n        }\n      }\n    };\n    expand(roots, 0);\n    for (const v of opts.initialSelected ?? []) this.selected.add(v);\n  }\n\n  /** Visible rows in display order, honoring collapsed nodes. */\n  rows(): TreeRow[] {\n    const out: TreeRow[] = [];\n    const walk = (nodes: TreeNode[], depth: number, parent?: TreeNode) => {\n      for (const node of nodes) {\n        out.push({ node, depth, parent });\n        if (node.children?.length && this.expanded.has(node)) walk(node.children, depth + 1, node);\n      }\n    };\n    walk(this.roots, 0);\n    return out;\n  }\n\n  current(): TreeRow | undefined {\n    return this.rows()[this.cursor];\n  }\n\n  isExpanded(node: TreeNode): boolean {\n    return this.expanded.has(node);\n  }\n\n  leaves(node: TreeNode): string[] {\n    if (!node.children?.length) return node.value !== undefined ? [node.value] : [];\n    return node.children.flatMap((c) => this.leaves(c));\n  }\n\n  state(node: TreeNode): CheckState {\n    const leaves = this.leaves(node);\n    if (leaves.length === 0) return 'none';\n    const n = leaves.filter((l) => this.selected.has(l)).length;\n    return n === 0 ? 'none' : n === leaves.length ? 'all' : 'some';\n  }\n\n  /** Space: leaf toggles; parent selects all descendants unless already all. */\n  toggle(): void {\n    const row = this.current();\n    if (!row) return;\n    const leaves = this.leaves(row.node);\n    if (this.state(row.node) === 'all') {\n      for (const l of leaves) this.selected.delete(l);\n    } else {\n      for (const l of leaves) this.selected.add(l);\n    }\n  }\n\n  move(delta: 1 | -1): void {\n    const n = this.rows().length;\n    if (n === 0) return;\n    this.cursor = (this.cursor + delta + n) % n;\n  }\n\n  /** Right: expand. On a leaf or an open node, nothing happens. */\n  expand(): void {\n    const row = this.current();\n    if (row?.node.children?.length) this.expanded.add(row.node);\n  }\n\n  /** Left: collapse an open node; on a closed node or leaf, jump to its parent. */\n  collapse(): void {\n    const row = this.current();\n    if (!row) return;\n    if (row.node.children?.length && this.expanded.has(row.node)) {\n      this.expanded.delete(row.node);\n      return;\n    }\n    if (row.parent) {\n      const idx = this.rows().findIndex((r) => r.node === row.parent);\n      if (idx >= 0) this.cursor = idx;\n    }\n  }\n\n  toggleExpand(): void {\n    const row = this.current();\n    if (!row?.node.children?.length) return;\n    if (this.expanded.has(row.node)) this.expanded.delete(row.node);\n    else this.expanded.add(row.node);\n  }\n}\n","import { Prompt, isCancel } from '@clack/core';\nimport { TreeModel, type TreeNode, type CheckState } from './tree.js';\n\n// Minimal ANSI styling (matches @clack/prompts' look without adding a dep).\nconst tty = process.stdout.isTTY && !process.env.NO_COLOR;\nconst paint = (code: number, s: string) => (tty ? `\\x1b[${code}m${s}\\x1b[39m` : s);\nconst dim = (s: string) => (tty ? `\\x1b[2m${s}\\x1b[22m` : s);\nconst cyan = (s: string) => paint(36, s);\nconst green = (s: string) => paint(32, s);\nconst yellow = (s: string) => paint(33, s);\nconst red = (s: string) => paint(31, s);\nconst gray = (s: string) => paint(90, s);\n\nconst S_BAR = '│';\nconst S_BAR_END = '└';\nconst CHECK: Record<CheckState, string> = { none: '◻', some: yellow('◧'), all: green('◼') };\n\nfunction symbol(state: string): string {\n  if (state === 'cancel') return red('■');\n  if (state === 'error') return yellow('▲');\n  if (state === 'submit') return green('◇');\n  return cyan('◆');\n}\n\nexport interface TreeSelectOptions {\n  message: string;\n  tree: TreeNode[];\n  /** How many levels start expanded (default 1 = roots open). */\n  expandDepth?: number;\n  initialValues?: string[];\n  required?: boolean;\n  /** Max visible rows (default: terminal height − 6, at least 5). */\n  maxItems?: number;\n}\n\n/**\n * A checkbox tree. Space toggles the node under the cursor (a parent toggles\n * everything beneath it), ←/→ collapse/expand, Enter confirms.\n * Resolves to the selected leaf values, or the clack cancel symbol.\n */\nexport async function treeSelect(opts: TreeSelectOptions): Promise<string[] | symbol> {\n  const model = new TreeModel(opts.tree, {\n    expandDepth: opts.expandDepth,\n    initialSelected: opts.initialValues,\n  });\n  const maxItems = Math.max(5, opts.maxItems ?? (process.stdout.rows || 24) - 6);\n\n  const prompt = new Prompt(\n    {\n      validate: () => {\n        if (opts.required !== false && model.selected.size === 0) return 'Select at least one item.';\n      },\n      render() {\n        const title = `${gray(S_BAR)}\\n${symbol(this.state)}  ${opts.message}\\n`;\n        if (this.state === 'submit') {\n          const n = model.selected.size;\n          return `${title}${gray(S_BAR)}  ${dim(`${n} item${n === 1 ? '' : 's'} selected`)}`;\n        }\n        if (this.state === 'cancel') {\n          return `${title}${gray(S_BAR)}  ${dim('cancelled')}\\n${gray(S_BAR)}`;\n        }\n\n        const rows = model.rows();\n        // Keep the cursor inside a window of `maxItems` rows.\n        let start = 0;\n        if (rows.length > maxItems) {\n          start = Math.min(Math.max(0, model.cursor - Math.floor(maxItems / 2)), rows.length - maxItems);\n        }\n        const end = Math.min(rows.length, start + maxItems);\n\n        const lines: string[] = [];\n        if (start > 0) lines.push(`${cyan(S_BAR)}  ${dim('…')}`);\n        for (let i = start; i < end; i++) {\n          const { node, depth } = rows[i];\n          const active = i === model.cursor;\n          const hasKids = !!node.children?.length;\n          const arrow = hasKids ? (model.isExpanded(node) ? '▾' : '▸') : ' ';\n          const box = CHECK[model.state(node)];\n          const indent = '  '.repeat(depth);\n          let label = active ? node.label : dim(node.label);\n          if (node.hint) label += ` ${dim(node.hint)}`;\n          lines.push(`${cyan(S_BAR)}  ${indent}${dim(arrow)} ${box} ${label}`);\n        }\n        if (end < rows.length) lines.push(`${cyan(S_BAR)}  ${dim('…')}`);\n\n        const footer =\n          this.state === 'error'\n            ? `${yellow(S_BAR_END)}  ${yellow(this.error)}`\n            : `${cyan(S_BAR_END)}  ${dim('space toggle · ←/→ collapse/expand · enter confirm')}`;\n        return `${title}${lines.join('\\n')}\\n${footer}\\n`;\n      },\n    },\n    false\n  );\n\n  prompt.on('cursor', (key) => {\n    switch (key) {\n      case 'up':\n        model.move(-1);\n        break;\n      case 'down':\n        model.move(1);\n        break;\n      case 'left':\n        model.collapse();\n        break;\n      case 'right':\n        model.expand();\n        break;\n      case 'space':\n        model.toggle();\n        break;\n    }\n    prompt.value = [...model.selected];\n  });\n  prompt.value = [...model.selected];\n\n  const result = await prompt.prompt();\n  if (isCancel(result)) return result;\n  return [...model.selected];\n}\n","","import pkg from '../../package.json' with { type: 'json' };\n\nexport const VERSION: string = pkg.version;\n","import { type BridgeConfig, saveConfig, loadConfig } from '../config.js';\nimport { refreshGitHooks } from '../git.js';\nimport { VERSION } from '../version.js';\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/**\n * A migration function receives the repo root and current config,\n * and returns the (possibly modified) config. It may also perform\n * filesystem operations (rename dirs, update files, etc.).\n */\nexport type MigrationFn = (\n  repoRoot: string,\n  config: BridgeConfig\n) => Promise<BridgeConfig>;\n\nexport interface Migration {\n  /** Semver version this migration upgrades TO (e.g. \"0.6.0\"). */\n  version: string;\n  /** Human-readable description shown when running. */\n  description: string;\n  /** The migration logic. */\n  migrate: MigrationFn;\n}\n\nexport interface MigrationResult {\n  fromVersion: string;\n  toVersion: string;\n  applied: string[];\n}\n\n// ---------------------------------------------------------------------------\n// Registry — add new migrations here in semver order\n// ---------------------------------------------------------------------------\n\nexport const migrations: Migration[] = [\n  {\n    version: '0.14.0',\n    description: 'move top-level domains into each source; git hooks run `sync` only',\n    migrate: async (repoRoot, config) => {\n      // Legacy configs list domains once for all sources. Give every source its\n      // own copy (everything included) so the top-level key can go away.\n      const { domains, ...rest } = config;\n      const sources = config.sources.map((s) =>\n        s.domains ? s : { ...s, domains: (domains ?? []).map((name) => ({ name })) }\n      );\n      // `update` was merged into `sync`; rewrite hooks we installed earlier.\n      await refreshGitHooks(repoRoot);\n      return { ...rest, sources };\n    },\n  },\n];\n\n// ---------------------------------------------------------------------------\n// Semver helpers (minimal — no external dep needed)\n// ---------------------------------------------------------------------------\n\n/** Parse \"1.2.3\" or \"1.2.3-beta.1\" into [major, minor, patch]. */\nexport function parseSemver(version: string): [number, number, number] {\n  const clean = version.replace(/^v/, '').split('-')[0];\n  const parts = clean.split('.').map(Number);\n  return [parts[0] ?? 0, parts[1] ?? 0, parts[2] ?? 0];\n}\n\n/** Returns -1 | 0 | 1 comparing a to b (ignores prerelease). */\nexport function compareSemver(a: string, b: string): number {\n  const [aMaj, aMin, aPat] = parseSemver(a);\n  const [bMaj, bMin, bPat] = parseSemver(b);\n\n  if (aMaj !== bMaj) return aMaj < bMaj ? -1 : 1;\n  if (aMin !== bMin) return aMin < bMin ? -1 : 1;\n  if (aPat !== bPat) return aPat < bPat ? -1 : 1;\n  return 0;\n}\n\n// ---------------------------------------------------------------------------\n// Migration runner\n// ---------------------------------------------------------------------------\n\n/**\n * Find migrations that should run when upgrading from `fromVersion` to\n * `toVersion`. Returns them sorted in ascending version order.\n */\nexport function pendingMigrations(\n  fromVersion: string,\n  toVersion: string\n): Migration[] {\n  return migrations\n    .filter(\n      (m) =>\n        compareSemver(m.version, fromVersion) > 0 &&\n        compareSemver(m.version, toVersion) <= 0\n    )\n    .sort((a, b) => compareSemver(a.version, b.version));\n}\n\n/**\n * Run all pending migrations between the config's version and the\n * currently installed VERSION. Updates and saves the config afterwards.\n *\n * Returns null if no migration was needed.\n */\nexport async function runMigrations(\n  repoRoot: string\n): Promise<MigrationResult | null> {\n  let config = await loadConfig(repoRoot);\n  const configVersion = config.version ?? '0.0.0';\n\n  const cmp = compareSemver(configVersion, VERSION);\n\n  // Already current\n  if (cmp === 0) return null;\n\n  // Config is newer than installed package (downgrade)\n  if (cmp > 0) return null;\n\n  // Config is older — find and run migrations\n  const pending = pendingMigrations(configVersion, VERSION);\n  const applied: string[] = [];\n\n  for (const migration of pending) {\n    config = await migration.migrate(repoRoot, config);\n    applied.push(migration.version);\n  }\n\n  // Always update the version, even if no migrations ran\n  // (e.g. patch bump with no structural changes)\n  config = { ...config, version: VERSION };\n  await saveConfig(repoRoot, config);\n\n  return {\n    fromVersion: configVersion,\n    toVersion: VERSION,\n    applied,\n  };\n}\n","import { readdir, mkdir, rmdir, copyFile, readFile, writeFile } from 'node:fs/promises';\nimport { join, dirname, basename } from 'node:path';\nimport type { BridgeConfig } from './config.js';\nimport {\n  dirExists,\n  fileExists,\n  copyDirContents,\n  removeDir,\n  removeFile,\n  readManifest,\n  writeManifest,\n  addToManifest,\n  removeFromManifest,\n  isManifestFolder,\n  manifestEntryName,\n  MARKER_FILENAME,\n} from './fs.js';\nimport {\n  type Feature,\n  type RootFile,\n  type ToolRootEntry,\n  ROOT_FILES,\n  featureMatchesTool,\n  featureName,\n} from './manifest.js';\n\n// ---------------------------------------------------------------------------\n// Feature path helpers\n// ---------------------------------------------------------------------------\n\n/**\n * Compute the destination path for a feature inside a tool's folder.\n * For folder-based features: returns the folder path.\n * For file-based features: returns the file path.\n */\nexport function featureDestPath(\n  repoRoot: string,\n  toolFolder: string,\n  featureType: string,\n  featureName: string\n): string {\n  return join(repoRoot, toolFolder, featureType, featureName);\n}\n\n// ---------------------------------------------------------------------------\n// Conflict detection\n// ---------------------------------------------------------------------------\n\n/**\n * Check whether a folder-based feature destination conflicts with existing user content.\n * Returns `true` when the folder exists and is not tracked in the manifest.\n */\nexport async function checkFolderConflict(featureTypeDir: string, folderName: string): Promise<boolean> {\n  const destPath = join(featureTypeDir, folderName);\n  if (!(await dirExists(destPath))) return false;\n  \n  const manifest = await readManifest(featureTypeDir);\n  return !manifest.includes(folderName + '/');\n}\n\n/**\n * Check whether a file-based feature destination conflicts with existing user content.\n * Returns `true` when the file exists and is not tracked in the manifest.\n */\nexport async function checkFileConflict(featureTypeDir: string, fileName: string): Promise<boolean> {\n  const filePath = join(featureTypeDir, fileName);\n  if (!(await fileExists(filePath))) return false;\n  \n  const manifest = await readManifest(featureTypeDir);\n  return !manifest.includes(fileName);\n}\n\n/**\n * Check whether a feature destination conflicts with existing user content.\n * Handles both folder-based and file-based features.\n */\nexport async function checkPathConflict(\n  featureTypeDir: string,\n  featureName: string,\n  isFile: boolean\n): Promise<boolean> {\n  if (isFile) {\n    return checkFileConflict(featureTypeDir, featureName);\n  } else {\n    return checkFolderConflict(featureTypeDir, featureName);\n  }\n}\n\n// ---------------------------------------------------------------------------\n// Single feature sync\n// ---------------------------------------------------------------------------\n\n/**\n * Sync a folder-based feature: clear destination, copy files, add to manifest.\n */\nexport async function syncFolderFeature(\n  sourcePath: string,\n  featureTypeDir: string,\n  folderName: string\n): Promise<'created' | 'updated'> {\n  const destPath = join(featureTypeDir, folderName);\n  const existed = await dirExists(destPath);\n\n  if (existed) {\n    await removeDir(destPath);\n  }\n\n  await mkdir(destPath, { recursive: true });\n  await copyDirContents(sourcePath, destPath);\n  await addToManifest(featureTypeDir, folderName + '/');\n\n  return existed ? 'updated' : 'created';\n}\n\n/**\n * Sync a file-based feature: copy file, add to manifest.\n */\nexport async function syncFileFeature(\n  sourcePath: string,\n  featureTypeDir: string,\n  fileName: string\n): Promise<'created' | 'updated'> {\n  const destPath = join(featureTypeDir, fileName);\n  const existed = await fileExists(destPath);\n\n  await mkdir(featureTypeDir, { recursive: true });\n  await copyFile(sourcePath, destPath);\n  await addToManifest(featureTypeDir, fileName);\n\n  return existed ? 'updated' : 'created';\n}\n\n/**\n * Sync a feature (folder or file based).\n * @deprecated Use syncFolderFeature or syncFileFeature directly\n */\nexport async function syncFeature(\n  sourcePath: string,\n  destPath: string\n): Promise<'created' | 'updated'> {\n  const featureTypeDir = dirname(destPath);\n  const folderName = basename(destPath);\n  return syncFolderFeature(sourcePath, featureTypeDir, folderName);\n}\n\n// ---------------------------------------------------------------------------\n// Empty directory cleanup\n// ---------------------------------------------------------------------------\n\nexport async function removeEmptyParents(\n  dirPath: string,\n  stopAt: string\n): Promise<void> {\n  let current = dirPath;\n  while (current !== stopAt && current.startsWith(stopAt)) {\n    try {\n      const entries = await readdir(current);\n      if (entries.length > 0) break;\n      await rmdir(current);\n      current = dirname(current);\n    } catch {\n      break;\n    }\n  }\n}\n\n// ---------------------------------------------------------------------------\n// Collect all managed entries from manifests\n// ---------------------------------------------------------------------------\n\ninterface ManagedEntry {\n  /** Full path to the file or folder */\n  path: string;\n  /** Directory containing the manifest (feature-type dir) */\n  manifestDir: string;\n  /** Entry as it appears in manifest (with trailing / for folders) */\n  manifestEntry: string;\n  /** True if folder, false if file */\n  isFolder: boolean;\n}\n\n/**\n * Recursively collect all managed entries (files and folders) from manifests.\n * Scans for .agentbridge files and reads their contents.\n */\nasync function collectManagedEntries(dir: string): Promise<ManagedEntry[]> {\n  if (!(await dirExists(dir))) return [];\n\n  const result: ManagedEntry[] = [];\n  const entries = await readdir(dir, { withFileTypes: true });\n\n  // Check if this directory has a manifest\n  const manifestEntries = await readManifest(dir);\n  for (const entry of manifestEntries) {\n    const isFolder = isManifestFolder(entry);\n    const name = manifestEntryName(entry);\n    result.push({\n      path: join(dir, name),\n      manifestDir: dir,\n      manifestEntry: entry,\n      isFolder,\n    });\n  }\n\n  // Recurse into subdirectories (to find manifests in nested feature-type dirs)\n  for (const entry of entries) {\n    if (!entry.isDirectory()) continue;\n    if (entry.name === MARKER_FILENAME) continue;\n    \n    const fullPath = join(dir, entry.name);\n    const sub = await collectManagedEntries(fullPath);\n    result.push(...sub);\n  }\n\n  return result;\n}\n\n// ---------------------------------------------------------------------------\n// Reconciliation (high-level)\n// ---------------------------------------------------------------------------\n\nexport interface ReconcileResult {\n  added: number;\n  updated: number;\n  removed: number;\n  errors: Array<{ path: string; error: string }>;\n}\n\ninterface ExpectedFeature {\n  sourcePath: string;\n  featureTypeDir: string;\n  name: string;\n  manifestEntry: string;\n  isFile: boolean;\n}\n\nexport async function reconcileFeatures(\n  repoRoot: string,\n  config: BridgeConfig,\n  features: Feature[]\n): Promise<ReconcileResult> {\n  let added = 0;\n  let updated = 0;\n  let removed = 0;\n  const errors: Array<{ path: string; error: string }> = [];\n\n  // Phase 1: Compute all expected features\n  // Key = full destination path\n  const expectedFeatures = new Map<string, ExpectedFeature>();\n\n  for (const tool of config.tools) {\n    for (const feature of features) {\n      if (!featureMatchesTool(feature, tool.name)) continue;\n\n      const name = featureName(feature);\n      const featureTypeDir = join(repoRoot, tool.folder, feature.displayType);\n      const destPath = join(featureTypeDir, name);\n      const manifestEntry = feature.isFile ? name : name + '/';\n\n      expectedFeatures.set(destPath, {\n        sourcePath: feature.absolutePath,\n        featureTypeDir,\n        name,\n        manifestEntry,\n        isFile: feature.isFile,\n      });\n    }\n  }\n\n  // Phase 2: Remove orphaned managed entries (previously synced but no longer expected)\n  for (const tool of config.tools) {\n    const toolDir = join(repoRoot, tool.folder);\n    const managedEntries = await collectManagedEntries(toolDir);\n\n    for (const entry of managedEntries) {\n      if (expectedFeatures.has(entry.path)) continue;\n\n      try {\n        if (entry.isFolder) {\n          await removeDir(entry.path);\n        } else {\n          await removeFile(entry.path);\n        }\n        await removeFromManifest(entry.manifestDir, entry.manifestEntry);\n        await removeEmptyParents(entry.manifestDir, toolDir);\n        removed++;\n      } catch (err) {\n        errors.push({\n          path: entry.path,\n          error: err instanceof Error ? err.message : String(err),\n        });\n      }\n    }\n  }\n\n  // Phase 3: Create / update features (isolate failures so one bad feature\n  // doesn't abort the entire sync).\n  for (const [destPath, expected] of expectedFeatures) {\n    try {\n      const result = expected.isFile\n        ? await syncFileFeature(\n            expected.sourcePath,\n            expected.featureTypeDir,\n            expected.name\n          )\n        : await syncFolderFeature(\n            expected.sourcePath,\n            expected.featureTypeDir,\n            expected.name\n          );\n\n      if (result === 'created') added++;\n      else if (result === 'updated') updated++;\n    } catch (err) {\n      errors.push({\n        path: destPath,\n        error: err instanceof Error ? err.message : String(err),\n      });\n    }\n  }\n\n  return { added, updated, removed, errors };\n}\n\n// ---------------------------------------------------------------------------\n// Root file sync\n// ---------------------------------------------------------------------------\n\nconst ROOT_FILE_MARKER = '<!-- Managed by Agent Bridge -->';\n\n/**\n * Check if a root file at `destPath` is managed by Agent Bridge.\n * A file is managed if it starts with the marker comment.\n */\nexport async function isRootFileManaged(destPath: string): Promise<boolean> {\n  if (!(await fileExists(destPath))) return false;\n  const content = await readFile(destPath, 'utf-8');\n  return content.startsWith(ROOT_FILE_MARKER);\n}\n\nexport interface RootFileSyncResult {\n  synced: string[];\n  removed: string[];\n  errors: Array<{ path: string; error: string }>;\n}\n\n/**\n * Sync root files: copy source root files to the workspace root, and clean up\n * managed root files that are no longer provided by any source.\n */\nexport async function syncRootFiles(\n  repoRoot: string,\n  rootFiles: RootFile[]\n): Promise<RootFileSyncResult> {\n  const synced: string[] = [];\n  const removed: string[] = [];\n  const errors: Array<{ path: string; error: string }> = [];\n\n  // Build map: fileName → rootFile (already deduplicated by caller)\n  const expected = new Map<string, RootFile>();\n  for (const rf of rootFiles) {\n    expected.set(rf.fileName, rf);\n  }\n\n  // Sync expected root files\n  for (const [fileName, rf] of expected) {\n    const destPath = join(repoRoot, fileName);\n    try {\n      // If file exists and is NOT managed by us, skip (don't overwrite user files)\n      if (await fileExists(destPath)) {\n        if (!(await isRootFileManaged(destPath))) {\n          continue;\n        }\n      }\n\n      const sourceContent = await readFile(rf.absolutePath, 'utf-8');\n      const managedContent = ROOT_FILE_MARKER + '\\n' + sourceContent;\n      await mkdir(dirname(destPath), { recursive: true });\n      await writeFile(destPath, managedContent, 'utf-8');\n      synced.push(fileName);\n    } catch (err) {\n      errors.push({\n        path: destPath,\n        error: err instanceof Error ? err.message : String(err),\n      });\n    }\n  }\n\n  // Remove managed root files no longer provided by any source\n  for (const fileName of ROOT_FILES) {\n    if (expected.has(fileName)) continue;\n    const destPath = join(repoRoot, fileName);\n    try {\n      if (await isRootFileManaged(destPath)) {\n        await removeFile(destPath);\n        removed.push(fileName);\n      }\n    } catch (err) {\n      errors.push({\n        path: destPath,\n        error: err instanceof Error ? err.message : String(err),\n      });\n    }\n  }\n\n  return { synced, removed, errors };\n}\n\n// ---------------------------------------------------------------------------\n// Tool root entry sync (tool-prefixed flat files)\n// ---------------------------------------------------------------------------\n\nexport interface ToolRootSyncResult {\n  added: number;\n  updated: number;\n  removed: number;\n  errors: Array<{ path: string; error: string }>;\n}\n\n/**\n * Reconcile tool root entries: sync expected entries and remove orphans.\n * Tool-prefixed flat files (e.g. `cursor--settings.json`) are copied directly\n * into the tool's root folder (e.g. `.cursor/settings.json`).\n */\nexport async function reconcileToolRootEntries(\n  repoRoot: string,\n  config: BridgeConfig,\n  entries: ToolRootEntry[]\n): Promise<ToolRootSyncResult> {\n  let added = 0;\n  let updated = 0;\n  let removed = 0;\n  const errors: Array<{ path: string; error: string }> = [];\n\n  // Build tool name → folder mapping\n  const toolFolders = new Map<string, string>();\n  for (const tool of config.tools) {\n    toolFolders.set(tool.name, tool.folder);\n  }\n\n  // Key = destination path, value = entry info\n  const expectedEntries = new Map<\n    string,\n    { sourcePath: string; name: string; toolDir: string }\n  >();\n\n  for (const entry of entries) {\n    const folder = toolFolders.get(entry.toolName);\n    if (!folder) continue;\n\n    const toolDir = join(repoRoot, folder);\n    const destPath = join(toolDir, entry.name);\n\n    expectedEntries.set(destPath, {\n      sourcePath: entry.absolutePath,\n      name: entry.name,\n      toolDir,\n    });\n  }\n\n  // Remove orphaned managed entries from tool root directories\n  for (const tool of config.tools) {\n    const toolDir = join(repoRoot, tool.folder);\n    const manifest = await readManifest(toolDir);\n\n    for (const manifestEntry of manifest) {\n      const isFolder = isManifestFolder(manifestEntry);\n      const name = manifestEntryName(manifestEntry);\n      const destPath = join(toolDir, name);\n\n      if (expectedEntries.has(destPath)) continue;\n\n      try {\n        if (isFolder) {\n          await removeDir(destPath);\n        } else {\n          await removeFile(destPath);\n        }\n        await removeFromManifest(toolDir, manifestEntry);\n        removed++;\n      } catch (err) {\n        errors.push({\n          path: destPath,\n          error: err instanceof Error ? err.message : String(err),\n        });\n      }\n    }\n  }\n\n  // Sync expected entries (always files)\n  for (const [, expected] of expectedEntries) {\n    try {\n      const result = await syncFileFeature(\n        expected.sourcePath,\n        expected.toolDir,\n        expected.name\n      );\n\n      if (result === 'created') added++;\n      else if (result === 'updated') updated++;\n    } catch (err) {\n      errors.push({\n        path: join(expected.toolDir, expected.name),\n        error: err instanceof Error ? err.message : String(err),\n      });\n    }\n  }\n\n  return { added, updated, removed, errors };\n}\n","import * as p from '@clack/prompts';\nimport { loadConfig, isOptedOut, OPT_OUT_MARKER } from '../lib/config.js';\nimport { findRepoRoot } from '../lib/git.js';\nimport { runMigrations } from '../lib/migrations/index.js';\nimport {\n  discoverFeatureTypes,\n  scanFeatures,\n  detectDuplicates,\n  scanRootFiles,\n  detectRootFileDuplicates,\n  scanToolRootEntries,\n  detectToolRootDuplicates,\n  featureMatchesTool,\n  featureName,\n} from '../lib/manifest.js';\nimport {\n  featureDestPath,\n  checkPathConflict,\n  reconcileFeatures,\n  syncRootFiles,\n  reconcileToolRootEntries,\n} from '../lib/sync.js';\nimport { syncAllSources, removeStaleSourceDirs } from '../lib/sources.js';\nimport { join } from 'node:path';\n\nexport async function syncCommand(cwd?: string, _opts?: unknown): Promise<void> {\n  const repoRoot = cwd ?? findRepoRoot();\n\n  p.intro('Agent Bridge Sync');\n\n  // Respect an opt-out tombstone so a postinstall guard doesn't re-sync.\n  if (await isOptedOut(repoRoot)) {\n    p.log.warn(`${OPT_OUT_MARKER} present — Agent Bridge is opted out. Skipping sync.`);\n    p.outro('Skipped (opted out).');\n    return;\n  }\n\n  const s = p.spinner();\n\n  // --- Phase 1: Load & validate config ---\n  s.start('Loading configuration…');\n\n  // Run pending migrations first so we work with the upgraded config\n  const migrationResult = await runMigrations(repoRoot);\n  if (migrationResult) {\n    p.log.info(\n      `Config upgraded ${migrationResult.fromVersion} → ${migrationResult.toVersion}` +\n        (migrationResult.applied.length > 0\n          ? ` (${migrationResult.applied.length} migration(s))`\n          : '')\n    );\n  }\n\n  const config = await loadConfig(repoRoot);\n  s.stop('Configuration valid');\n\n  // --- Phase 2: Fetch sources (clone new, pull existing) ---\n  s.start('Fetching sources…');\n\n  const sourceResults = await syncAllSources(repoRoot, config);\n  const sourceErrors = sourceResults.filter((r) => r.error);\n  if (sourceErrors.length > 0) {\n    s.stop('Some sources failed');\n    for (const err of sourceErrors) {\n      p.log.error(`${err.name}: ${err.error}`);\n    }\n    process.exit(1);\n  }\n\n  // Clean up stale source directories\n  const staleRemoved = await removeStaleSourceDirs(repoRoot, config);\n  if (staleRemoved.length > 0) {\n    for (const name of staleRemoved) {\n      p.log.info(`Removed stale source: ${name}`);\n    }\n  }\n\n  for (const r of sourceResults) {\n    if (r.action !== 'local') {\n      p.log.info(`${r.name}: ${r.action}`);\n    }\n  }\n\n  s.stop('Sources up to date');\n\n  // --- Phase 3: Discover & validate features ---\n  s.start('Discovering features…');\n\n  const featureTypes = await discoverFeatureTypes(repoRoot, config);\n  const features = await scanFeatures(repoRoot, config, featureTypes);\n  const rootFiles = await scanRootFiles(repoRoot, config);\n  const toolRootEntries = await scanToolRootEntries(repoRoot, config);\n\n  const duplicates = detectDuplicates(features);\n  if (duplicates.length > 0) {\n    s.stop('Duplicate features detected');\n    for (const dup of duplicates) {\n      p.log.error(\n        `Duplicate \"${dup.name}\" (${dup.type}): ${dup.paths.join(', ')}`\n      );\n    }\n    process.exit(1);\n  }\n\n  const rootDuplicates = detectRootFileDuplicates(rootFiles);\n  if (rootDuplicates.length > 0) {\n    s.stop('Duplicate root files detected');\n    for (const dup of rootDuplicates) {\n      p.log.error(\n        `Duplicate \"${dup.fileName}\": ${dup.paths.join(', ')}`\n      );\n    }\n    process.exit(1);\n  }\n\n  const toolRootDuplicates = detectToolRootDuplicates(toolRootEntries);\n  if (toolRootDuplicates.length > 0) {\n    s.stop('Duplicate tool root entries detected');\n    for (const dup of toolRootDuplicates) {\n      p.log.error(\n        `Duplicate \"${dup.name}\" for tool \"${dup.toolName}\": ${dup.paths.join(', ')}`\n      );\n    }\n    process.exit(1);\n  }\n\n  s.stop(`${features.length} features found${rootFiles.length > 0 ? `, ${rootFiles.length} root file(s)` : ''}${toolRootEntries.length > 0 ? `, ${toolRootEntries.length} tool root entr${toolRootEntries.length === 1 ? 'y' : 'ies'}` : ''}`);\n\n  // --- Phase 3b: Detect path conflicts ---\n  s.start('Checking for path conflicts…');\n\n  const conflicts: string[] = [];\n  for (const tool of config.tools) {\n    for (const feature of features) {\n      if (!featureMatchesTool(feature, tool.name)) continue;\n\n      const linkName = featureName(feature);\n      const featureTypeDir = join(repoRoot, tool.folder, feature.displayType);\n      const dest = featureDestPath(\n        repoRoot,\n        tool.folder,\n        feature.displayType,\n        linkName\n      );\n      if (await checkPathConflict(featureTypeDir, linkName, feature.isFile)) {\n        conflicts.push(dest);\n      }\n    }\n  }\n\n  if (conflicts.length > 0) {\n    s.stop('Path conflicts detected');\n    for (const c of conflicts) {\n      p.log.error(`Conflict: \"${c}\" exists as a real file or directory`);\n    }\n    p.log.info('Remove or rename the conflicting paths, then re-run sync.');\n    process.exit(1);\n  }\n\n  s.stop('No path conflicts');\n\n  // --- Phase 4: Reconcile features ---\n  s.start('Reconciling features…');\n\n  const result = await reconcileFeatures(repoRoot, config, features);\n\n  s.stop('Features reconciled');\n\n  p.log.info(\n    `Added: ${result.added}  Updated: ${result.updated}  Removed: ${result.removed}`\n  );\n\n  if (result.errors.length > 0) {\n    for (const err of result.errors) {\n      p.log.error(`${err.path}: ${err.error}`);\n    }\n    p.outro(`Sync completed with ${result.errors.length} error(s).`);\n    process.exit(1);\n  }\n\n  // --- Phase 5: Sync root files ---\n  if (rootFiles.length > 0) {\n    s.start('Syncing root files…');\n\n    const rootResult = await syncRootFiles(repoRoot, rootFiles);\n\n    for (const name of rootResult.synced) {\n      p.log.info(`Root file synced: ${name}`);\n    }\n    for (const name of rootResult.removed) {\n      p.log.info(`Root file removed: ${name}`);\n    }\n    for (const err of rootResult.errors) {\n      p.log.error(`${err.path}: ${err.error}`);\n    }\n\n    s.stop('Root files synced');\n  } else {\n    // Clean up any managed root files when no sources provide them\n    const rootResult = await syncRootFiles(repoRoot, []);\n    for (const name of rootResult.removed) {\n      p.log.info(`Root file removed: ${name}`);\n    }\n  }\n\n  // --- Phase 6: Sync tool root entries ---\n  s.start('Syncing tool root entries…');\n\n  const toolRootResult = await reconcileToolRootEntries(\n    repoRoot,\n    config,\n    toolRootEntries\n  );\n\n  if (\n    toolRootResult.added > 0 ||\n    toolRootResult.updated > 0 ||\n    toolRootResult.removed > 0\n  ) {\n    p.log.info(\n      `Tool root: Added: ${toolRootResult.added}  Updated: ${toolRootResult.updated}  Removed: ${toolRootResult.removed}`\n    );\n  }\n\n  if (toolRootResult.errors.length > 0) {\n    for (const err of toolRootResult.errors) {\n      p.log.error(`${err.path}: ${err.error}`);\n    }\n    s.stop('Tool root entries synced with errors');\n    p.outro(`Sync completed with ${toolRootResult.errors.length} error(s).`);\n    process.exit(1);\n  }\n\n  s.stop('Tool root entries synced');\n\n  p.outro('Sync complete.');\n}\n","import * as p from '@clack/prompts';\nimport { resolve } from 'node:path';\nimport {\n  configExists,\n  isRemoteSource,\n  loadConfig,\n  saveConfig,\n  isOptedOut,\n  removeOptOutMarker,\n  OPT_OUT_MARKER,\n  type BridgeConfig,\n  type DomainConfig,\n  type ToolConfig,\n  type SourceConfig,\n} from '../lib/config.js';\nimport { findRepoRoot, isInGitRepo, installGitHooks } from '../lib/git.js';\nimport { listDomains, listDomainContents } from '../lib/manifest.js';\nimport { syncSource, resolveSourcePath, ensureBridgeGitignore } from '../lib/sources.js';\nimport { treeSelect } from '../lib/tree-prompt.js';\nimport { type TreeNode } from '../lib/tree.js';\nimport { VERSION } from '../lib/version.js';\nimport { syncCommand } from './sync.js';\n\nconst WELL_KNOWN_TOOLS = [\n  { value: { name: 'vscode', folder: '.github' }, label: 'VS Code (.github/)' },\n  { value: { name: 'cursor', folder: '.cursor' }, label: 'Cursor (.cursor/)' },\n  { value: { name: 'claude', folder: '.claude' }, label: 'Claude (.claude/)' },\n  { value: { name: 'pi', folder: '.pi' }, label: 'Pi (.pi/)' },\n];\n\nconst WELL_KNOWN_TOOL_MAP: Record<string, ToolConfig> = Object.fromEntries(\n  WELL_KNOWN_TOOLS.map((t) => [t.value.name, t.value])\n);\n\nconst CUSTOM_TOOL_SENTINEL: ToolConfig = { name: '__custom__', folder: '__custom__' };\n\nexport interface InitOptions {\n  force?: boolean;\n  domains?: string;\n  tools?: string;\n  source?: string[];\n  hooks?: boolean;\n}\n\n// ---------------------------------------------------------------------------\n// Argument parsing (shared by interactive and non-interactive mode)\n// ---------------------------------------------------------------------------\n\n/**\n * Derive a short source name from a URL or local path.\n *\n * Examples:\n *   https://github.com/org/repo.git  → repo\n *   git@github.com:org/repo.git      → repo\n *   file:///tmp/bare.git             → bare\n *   /path/to/my-folder               → my-folder\n */\nexport function deriveSourceName(source: string): string {\n  let segment = source;\n\n  // SSH: git@host:org/repo.git → org/repo.git\n  const sshMatch = segment.match(/^[\\w.-]+@[\\w.-]+:(.+)$/);\n  if (sshMatch) segment = sshMatch[1];\n\n  // Strip protocol + host for URLs\n  try {\n    const url = new URL(segment);\n    segment = url.pathname;\n  } catch {\n    // not a URL — keep as-is (local path or already stripped)\n  }\n\n  // Take the last path component, strip trailing slashes and .git suffix\n  const base = segment.replace(/\\/+$/, '').split('/').pop() ?? segment;\n  return base.replace(/\\.git$/, '') || 'source';\n}\n\n/**\n * Parse a comma-separated `--tools` argument into ToolConfig[].\n * Accepts well-known names (cursor, vscode, claude) or `name:folder` pairs.\n */\nexport function parseToolsArg(input: string): ToolConfig[] {\n  return input.split(',').map((t) => {\n    const trimmed = t.trim();\n    if (!trimmed) throw new Error('Empty tool name in --tools');\n\n    if (WELL_KNOWN_TOOL_MAP[trimmed]) return WELL_KNOWN_TOOL_MAP[trimmed];\n\n    const colonIdx = trimmed.indexOf(':');\n    if (colonIdx > 0) {\n      return { name: trimmed.slice(0, colonIdx), folder: trimmed.slice(colonIdx + 1) };\n    }\n\n    throw new Error(\n      `Unknown tool \"${trimmed}\". Use a known name (${Object.keys(WELL_KNOWN_TOOL_MAP).join(', ')}) or name:folder format.`\n    );\n  });\n}\n\n/**\n * Parse a single `--source` argument into a SourceConfig.\n * Supports `#branch` suffix for remote sources.\n */\nexport function parseSourceArg(input: string, repoRoot: string): SourceConfig {\n  let source = input.trim();\n  let branch: string | undefined;\n\n  const hashIdx = source.lastIndexOf('#');\n  if (hashIdx > 0) {\n    branch = source.slice(hashIdx + 1);\n    source = source.slice(0, hashIdx);\n  }\n\n  if (!source) throw new Error('Empty source in --source');\n\n  const name = deriveSourceName(source);\n  const entry: SourceConfig = { name, source };\n\n  if (!isRemoteSource(entry.source)) {\n    entry.source = resolve(repoRoot, entry.source);\n  }\n\n  if (branch) {\n    entry.branch = branch;\n  }\n\n  return entry;\n}\n\n/**\n * Turn a per-domain selection into the `include` list stored in config.\n * Returns `undefined` when everything is selected (= sync the whole domain).\n * A fully selected feature type collapses to its name (`skills`).\n */\nexport function buildInclude(\n  contents: { featureTypes: Array<{ name: string; features: string[] }>; files: string[] },\n  selected: Set<string>\n): string[] | undefined {\n  const include: string[] = [];\n  let everything = true;\n\n  for (const ft of contents.featureTypes) {\n    const picked = ft.features.filter((f) => selected.has(`${ft.name}/${f}`));\n    if (picked.length === ft.features.length) {\n      include.push(ft.name);\n    } else {\n      everything = false;\n      include.push(...picked.map((f) => `${ft.name}/${f}`));\n    }\n  }\n  for (const file of contents.files) {\n    if (selected.has(file)) include.push(file);\n    else everything = false;\n  }\n\n  return everything ? undefined : include;\n}\n\n// ---------------------------------------------------------------------------\n// Shared steps\n// ---------------------------------------------------------------------------\n\nfunction cancelled(value: unknown): value is symbol {\n  if (p.isCancel(value)) {\n    p.cancel('Setup cancelled.');\n    process.exit(1);\n  }\n  return false;\n}\n\n/** Clone remote sources / verify local ones. Exits on failure. */\nasync function fetchSources(repoRoot: string, sources: SourceConfig[]): Promise<void> {\n  await ensureBridgeGitignore(repoRoot);\n  const s = p.spinner();\n  s.start('Fetching sources…');\n  const results = await Promise.all(sources.map((src) => syncSource(repoRoot, src)));\n  const errors = results.filter((r) => r.error);\n  if (errors.length > 0) {\n    s.stop('Some sources failed');\n    for (const err of errors) p.log.error(`${err.name}: ${err.error}`);\n    p.cancel('Fix the source URL/path and run `agent-bridge init` again.');\n    process.exit(1);\n  }\n  s.stop(`${sources.length} source(s) ready`);\n}\n\nasync function maybeInstallHooks(repoRoot: string, force: boolean): Promise<void> {\n  const hookResult = await installGitHooks(repoRoot, force);\n  if (hookResult.installed.length > 0) {\n    p.log.success(`Installed git hooks: ${hookResult.installed.join(', ')}`);\n  }\n  if (hookResult.skipped.length > 0) {\n    p.log.warn(`Skipped hooks (existing non-Agent-Bridge hooks): ${hookResult.skipped.join(', ')}`);\n    p.log.info('Re-run `agent-bridge init --force` to overwrite, or integrate manually.');\n  }\n  for (const e of hookResult.errors) {\n    p.log.error(`Hook ${e.hook}: ${e.error}`);\n  }\n}\n\n// ---------------------------------------------------------------------------\n// Interactive prompts\n// ---------------------------------------------------------------------------\n\nasync function promptTools(): Promise<ToolConfig[]> {\n  const selected = await p.multiselect({\n    message: 'Which tools should receive synced files?',\n    options: [...WELL_KNOWN_TOOLS, { value: CUSTOM_TOOL_SENTINEL, label: 'Other (add custom tool)' }],\n    required: true,\n  });\n  cancelled(selected);\n\n  const tools = (selected as ToolConfig[]).filter((t) => t.name !== CUSTOM_TOOL_SENTINEL.name);\n  if (!(selected as ToolConfig[]).some((t) => t.name === CUSTOM_TOOL_SENTINEL.name)) return tools;\n\n  for (;;) {\n    const name = await p.text({\n      message: 'Custom tool name (used for <tool>-- prefix matching)',\n      placeholder: 'windsurf',\n      validate: (v) => {\n        if (!v.trim()) return 'Tool name cannot be empty';\n        if (tools.some((t) => t.name === v.trim())) return 'Tool name already used';\n      },\n    });\n    if (p.isCancel(name)) break;\n\n    const folder = await p.text({\n      message: `Target folder for \"${name}\"`,\n      placeholder: `.${name}`,\n      validate: (v) => {\n        if (!v.trim()) return 'Folder cannot be empty';\n        if (tools.some((t) => t.folder === v.trim())) return 'Folder already used by another tool';\n      },\n    });\n    if (p.isCancel(folder)) break;\n\n    tools.push({ name: name.trim(), folder: folder.trim() });\n\n    const more = await p.confirm({ message: 'Add another custom tool?', initialValue: false });\n    if (p.isCancel(more) || !more) break;\n  }\n\n  if (tools.length === 0) {\n    p.cancel('At least one tool is required.');\n    process.exit(1);\n  }\n  return tools;\n}\n\nasync function promptSources(repoRoot: string): Promise<SourceConfig[]> {\n  const sources: SourceConfig[] = [];\n  p.log.info('Add at least one source — a Git URL or a local folder that follows the domain layout.');\n\n  for (;;) {\n    const input = await p.text({\n      message: sources.length === 0 ? 'Source URL or local path' : 'Another source URL or local path',\n      placeholder: 'https://github.com/org/ai-hub.git',\n      validate: (v) => {\n        if (!v.trim()) return 'Source URL/path cannot be empty';\n        const derived = deriveSourceName(v.trim());\n        if (sources.some((s) => s.name === derived))\n          return `Source name \"${derived}\" (derived from URL) already used`;\n      },\n    });\n    if (p.isCancel(input)) {\n      if (sources.length === 0) cancelled(input);\n      break;\n    }\n\n    const entry = parseSourceArg(input, repoRoot);\n    if (isRemoteSource(entry.source) && !entry.branch) {\n      const branch = await p.text({\n        message: 'Branch (leave empty for the remote default)',\n        placeholder: 'main',\n        defaultValue: '',\n      });\n      cancelled(branch);\n      if ((branch as string).trim()) entry.branch = (branch as string).trim();\n    }\n    sources.push(entry);\n\n    const more = await p.confirm({ message: 'Add another source?', initialValue: false });\n    if (p.isCancel(more) || !more) break;\n  }\n  return sources;\n}\n\n/**\n * One checkbox tree: source → domain → feature type → feature (plus a\n * `files` group per domain). Ticking a node ticks everything beneath it.\n * Returns, per source, the picked domains with their `include` lists\n * (`undefined` include = whole domain).\n */\nasync function promptSelection(\n  repoRoot: string,\n  sources: SourceConfig[],\n  toolNames: string[]\n): Promise<Map<string, DomainConfig[]>> {\n  // Leaf value: `<source>\\u0000<domain>\\u0000<relPath>`; a domain with no\n  // syncable content becomes a leaf with an empty relPath (= whole domain).\n  const SEP = '\\u0000';\n  const contentsByKey = new Map<string, Awaited<ReturnType<typeof listDomainContents>>>();\n  const tree: TreeNode[] = [];\n\n  for (const source of sources) {\n    const srcPath = resolveSourcePath(repoRoot, source);\n    const domains = await listDomains(srcPath);\n    if (domains.length === 0) {\n      p.log.warn(`${source.name}: no domain folders found — nothing to select.`);\n      continue;\n    }\n    const domainNodes: TreeNode[] = [];\n    for (const domain of domains) {\n      const contents = await listDomainContents(srcPath, domain, toolNames);\n      contentsByKey.set(`${source.name}${SEP}${domain}`, contents);\n      const prefix = `${source.name}${SEP}${domain}${SEP}`;\n      const children: TreeNode[] = contents.featureTypes\n        .filter((ft) => ft.features.length > 0)\n        .map((ft) => ({\n          label: ft.name,\n          hint: `(${ft.features.length})`,\n          children: ft.features.map((f) => ({ label: f, value: `${prefix}${ft.name}/${f}` })),\n        }));\n      if (contents.files.length > 0) {\n        children.push({ label: 'files', children: contents.files.map((f) => ({ label: f, value: `${prefix}${f}` })) });\n      }\n      const hint = contents.featureTypes\n        .filter((ft) => ft.features.length > 0)\n        .map((ft) => `${ft.features.length} ${ft.name}`)\n        .join(', ');\n      domainNodes.push(\n        children.length > 0\n          ? { label: domain, hint: hint ? `(${hint})` : undefined, children }\n          : { label: domain, hint: '(empty)', value: prefix }\n      );\n    }\n    tree.push({ label: source.name, children: domainNodes });\n  }\n\n  if (tree.length === 0) {\n    p.cancel('No domains found in any source. Check the source layout: <source>/<domain>/<feature-type>/…');\n    process.exit(1);\n  }\n\n  const picked = await treeSelect({\n    message: 'What do you want to sync? Tick a domain to take all of it, or open it and pick pieces.',\n    tree,\n    expandDepth: 1,\n    required: true,\n  });\n  cancelled(picked);\n\n  // Group selected leaves by source/domain, then compress into include lists.\n  const byDomain = new Map<string, Set<string>>();\n  for (const value of picked as string[]) {\n    const [sourceName, domain, rel] = value.split(SEP);\n    const key = `${sourceName}${SEP}${domain}`;\n    const set = byDomain.get(key) ?? new Set<string>();\n    if (rel) set.add(rel);\n    byDomain.set(key, set);\n  }\n\n  const result = new Map<string, DomainConfig[]>();\n  for (const [key, rels] of byDomain) {\n    const [sourceName, domain] = key.split(SEP);\n    const contents = contentsByKey.get(key)!;\n    const include = rels.size === 0 ? undefined : buildInclude(contents, rels);\n    const list = result.get(sourceName) ?? [];\n    list.push(include ? { name: domain, include } : { name: domain });\n    result.set(sourceName, list);\n  }\n  return result;\n}\n\n// ---------------------------------------------------------------------------\n// Command\n// ---------------------------------------------------------------------------\n\nexport async function initCommand(cwd?: string, opts?: InitOptions): Promise<void> {\n  const repoRoot = cwd ?? findRepoRoot();\n\n  // Respect an opt-out tombstone so a postinstall guard doesn't reinstall.\n  // `--force` clears it (deliberate re-opt-in).\n  if (await isOptedOut(repoRoot)) {\n    if (opts?.force) {\n      await removeOptOutMarker(repoRoot);\n    } else {\n      p.log.warn(\n        `${OPT_OUT_MARKER} present — Agent Bridge is opted out. ` +\n          `Skipping init. Delete the file or run with --force to re-enable.`\n      );\n      return;\n    }\n  }\n\n  const hasToolsArg = !!opts?.tools;\n  const hasSourceArg = !!(opts?.source && opts.source.length > 0);\n\n  if (hasToolsArg !== hasSourceArg) {\n    p.log.error('Both --tools and --source are required for non-interactive init.');\n    process.exit(1);\n  }\n\n  // --- Non-interactive mode ---\n  if (hasToolsArg && hasSourceArg) {\n    const tools = parseToolsArg(opts!.tools!);\n    const sources = opts!.source!.map((s) => parseSourceArg(s, repoRoot));\n\n    const seen = new Set<string>();\n    for (const s of sources) {\n      if (seen.has(s.name)) {\n        throw new Error(`Duplicate source name \"${s.name}\" derived from --source arguments`);\n      }\n      seen.add(s.name);\n    }\n\n    await fetchSources(repoRoot, sources);\n\n    const domainsArg = opts!.domains\n      ? opts!.domains.split(',').map((d) => d.trim()).filter(Boolean)\n      : undefined;\n    for (const source of sources) {\n      const names = domainsArg ?? (await listDomains(resolveSourcePath(repoRoot, source)));\n      source.domains = names.map((name): DomainConfig => ({ name }));\n      if (source.domains.length === 0) {\n        p.log.warn(`${source.name}: no domains found — add some or pass --domains.`);\n      }\n    }\n\n    const config: BridgeConfig = { version: VERSION, tools, sources };\n    await saveConfig(repoRoot, config);\n    p.log.success('Saved .agent-bridge/config.yml');\n\n    if (opts!.hooks && isInGitRepo(repoRoot)) {\n      await maybeInstallHooks(repoRoot, opts!.force === true);\n    }\n\n    p.outro('Done! Run `agent-bridge sync` to sync features.');\n    return;\n  }\n\n  // --- Interactive mode ---\n  p.intro('Agent Bridge — Project Setup');\n\n  if (await configExists(repoRoot)) {\n    const existing = await loadConfig(repoRoot);\n    p.log.info(\n      `Config already exists with ${existing.sources.length} source(s). Finishing this setup will overwrite it.`\n    );\n  }\n\n  // 1. Tools\n  const tools = await promptTools();\n\n  // 2. Sources (then fetch them so we can show what's inside)\n  const sources = await promptSources(repoRoot);\n  await fetchSources(repoRoot, sources);\n\n  // 3. One tree: domains and their contents, per source\n  const picked = await promptSelection(repoRoot, sources, tools.map((t) => t.name));\n  for (const source of sources) {\n    source.domains = picked.get(source.name) ?? [];\n  }\n  // Sources without any picked domain contribute nothing — drop them.\n  const activeSources = sources.filter((s) => (s.domains?.length ?? 0) > 0);\n  for (const s of sources) {\n    if (!activeSources.includes(s)) p.log.warn(`${s.name}: no domains selected — source dropped from config.`);\n  }\n\n  const config: BridgeConfig = { version: VERSION, tools, sources: activeSources };\n  await saveConfig(repoRoot, config);\n  p.log.success('Saved .agent-bridge/config.yml — commit this file.');\n\n  // 4. Git hooks\n  if (isInGitRepo(repoRoot)) {\n    const installHooks = await p.confirm({\n      message: 'Install git hooks to auto-sync after checkout/merge?',\n      initialValue: false,\n    });\n    if (!p.isCancel(installHooks) && installHooks) {\n      await maybeInstallHooks(repoRoot, opts?.force === true);\n    }\n  }\n\n  // 5. Sync right away\n  const syncNow = await p.confirm({ message: 'Run `agent-bridge sync` now?', initialValue: true });\n  if (!p.isCancel(syncNow) && syncNow) {\n    await syncCommand(repoRoot);\n    return;\n  }\n  p.outro('Done! Run `agent-bridge sync` whenever you want to pull the latest features.');\n}\n","import * as p from '@clack/prompts';\nimport {\n  bridgeDir,\n  configExists,\n  loadConfig,\n  writeOptOutMarker,\n  OPT_OUT_MARKER,\n  type BridgeConfig,\n} from '../lib/config.js';\nimport { removeDir, dirExists } from '../lib/fs.js';\nimport { findRepoRoot, isInGitRepo, removeGitHooks } from '../lib/git.js';\nimport { reconcileFeatures, reconcileToolRootEntries } from '../lib/sync.js';\n\nfunction summarizeTools(config: BridgeConfig): string {\n  return config.tools.map((t) => t.name).join(', ');\n}\n\nexport async function optOutCommand(\n  cwd?: string,\n  _opts?: unknown\n): Promise<void> {\n  const repoRoot = cwd ?? findRepoRoot();\n\n  p.intro('Agent Bridge Opt-out');\n\n  const hasConfig = await configExists(repoRoot);\n  let config: BridgeConfig | undefined;\n\n  if (hasConfig) {\n    config = await loadConfig(repoRoot);\n  }\n\n  const toolSummary = config ? summarizeTools(config) : 'unknown (no config found)';\n  p.log.info(\n    `Non-interactive opt-out: removing Agent Bridge managed files for tools: ${toolSummary}`\n  );\n\n  const s = p.spinner();\n\n  let featureErrors = 0;\n  let toolRootErrors = 0;\n\n  if (config) {\n    s.start('Removing synced Agent Bridge files…');\n\n    const featureResult = await reconcileFeatures(repoRoot, config, []);\n    const toolRootResult = await reconcileToolRootEntries(repoRoot, config, []);\n\n    featureErrors = featureResult.errors.length;\n    toolRootErrors = toolRootResult.errors.length;\n\n    s.stop('Synced files removed');\n\n    p.log.info(\n      `Features removed: ${featureResult.removed} (errors: ${featureErrors})`\n    );\n    p.log.info(\n      `Tool-root files removed: ${toolRootResult.removed} (errors: ${toolRootErrors})`\n    );\n    p.log.info('Root files are not removed by opt-out (manifest-only cleanup).');\n\n    for (const err of featureResult.errors) {\n      p.log.error(`${err.path}: ${err.error}`);\n    }\n    for (const err of toolRootResult.errors) {\n      p.log.error(`${err.path}: ${err.error}`);\n    }\n  } else {\n    p.log.warn('No .agent-bridge/config.yml found. Skipping synced file cleanup.');\n  }\n\n  s.start('Removing Agent Bridge git hooks…');\n  const removedHooks = isInGitRepo(repoRoot) ? await removeGitHooks(repoRoot) : [];\n  s.stop('Hooks cleanup complete');\n\n  if (removedHooks.length > 0) {\n    p.log.info(`Removed hooks: ${removedHooks.join(', ')}`);\n  } else if (isInGitRepo(repoRoot)) {\n    p.log.info('No Agent Bridge hooks found.');\n  } else {\n    p.log.info('Not a git repository; hook cleanup skipped.');\n  }\n\n  s.start('Removing .agent-bridge directory…');\n  const bridgePath = bridgeDir(repoRoot);\n  if (await dirExists(bridgePath)) {\n    await removeDir(bridgePath);\n    s.stop('.agent-bridge removed');\n  } else {\n    s.stop('.agent-bridge not found');\n  }\n\n  // Write a tombstone that survives `.agent-bridge/` deletion so a postinstall\n  // guard (or a manual init/sync) won't silently reinstall on the next install.\n  await writeOptOutMarker(repoRoot);\n  p.log.info(\n    `Wrote ${OPT_OUT_MARKER} (gitignored, local to this machine). ` +\n      'Force-add it (`git add -f`) for a repo-wide opt-out. ' +\n      'Run `agent-bridge init --force` to re-enable.'\n  );\n\n  const totalErrors = featureErrors + toolRootErrors;\n  if (totalErrors > 0) {\n    p.outro(`Opt-out completed with ${totalErrors} cleanup error(s).`);\n    process.exit(1);\n  }\n\n  p.outro('Opt-out complete. Agent Bridge is removed from this repository.');\n}\n","#!/usr/bin/env node\n\nimport { resolve } from 'node:path';\nimport { stat } from 'node:fs/promises';\nimport { Command } from 'commander';\nimport { initCommand } from './commands/init.js';\nimport { syncCommand } from './commands/sync.js';\nimport { optOutCommand } from './commands/opt-out.js';\nimport { VERSION } from './lib/version.js';\n\nexport interface CliOptions {\n  cwd?: string;\n  force?: boolean;\n  // Init-specific options (ignored by other commands)\n  domains?: string;\n  tools?: string;\n  source?: string[];\n  hooks?: boolean;\n}\n\nasync function assertCwdExists(cwd: string): Promise<void> {\n  try {\n    const s = await stat(cwd);\n    if (!s.isDirectory()) {\n      throw new Error(`--cwd path is not a directory: ${cwd}`);\n    }\n  } catch (err) {\n    if ((err as NodeJS.ErrnoException).code === 'ENOENT') {\n      throw new Error(`--cwd path does not exist: ${cwd}`);\n    }\n    throw err;\n  }\n}\n\nasync function withCwdValidation(\n  action: (cwd?: string, opts?: CliOptions) => Promise<void>\n): Promise<(opts: CliOptions) => Promise<void>> {\n  return async (opts: CliOptions) => {\n    if (opts.cwd) {\n      opts.cwd = resolve(opts.cwd);\n      await assertCwdExists(opts.cwd);\n    }\n    await action(opts.cwd, opts);\n  };\n}\n\nfunction collect(value: string, previous: string[]): string[] {\n  previous.push(value);\n  return previous;\n}\n\nconst program = new Command()\n  .name('agent-bridge')\n  .description('Manage AI tool configurations from multiple sources')\n  .version(VERSION, '-v, --version');\n\nprogram\n  .command('init')\n  .description('Set up Agent Bridge: pick tools, sources and domains (creates .agent-bridge/config.yml)')\n  .option('--cwd <path>', 'Override the working directory')\n  .option('--force', 'Overwrite existing non-Agent-Bridge git hooks')\n  .option('--domains <list>', 'Comma-separated domain list (default: every domain found in each source)')\n  .option('--tools <list>', 'Comma-separated tool names (cursor,vscode,claude) or name:folder pairs')\n  .option('-s, --source <url>', 'Source URL or path (repeatable, append #branch for branch)', collect, [])\n  .option('--hooks', 'Auto-install git hooks without prompting')\n  .action(await withCwdValidation(initCommand));\n\nprogram\n  .command('sync')\n  .description('Fetch the latest sources and sync features into your tool folders')\n  .option('--cwd <path>', 'Override the working directory')\n  .action(await withCwdValidation(syncCommand));\n\n// `update` was merged into `sync` (0.14.0). Kept hidden so hooks installed by\n// older versions (`agent-bridge update && agent-bridge sync`) keep working.\nprogram\n  .command('update', { hidden: true })\n  .option('--cwd <path>', 'Override the working directory')\n  .action(\n    await withCwdValidation(async (cwd) => {\n      console.error('`agent-bridge update` is deprecated — running `agent-bridge sync` instead (it fetches sources too).');\n      await syncCommand(cwd);\n    })\n  );\n\nprogram\n  .command('opt-out')\n  .description('Remove Agent Bridge hooks, synced files, and .agent-bridge state')\n  .option('--cwd <path>', 'Override the working directory')\n  .action(await 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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@sofatutor/agent-bridge",
-  "version": "0.14.0",
+  "version": "0.15.0",
   "description": "Sync AI agent configurations (skills, agents, prompts) from shared sources into your project's tool directories.",
   "license": "MIT",
   "repository": {
@@ -30,6 +30,7 @@
     "typecheck": "tsc --noEmit"
   },
   "dependencies": {
+    "@clack/core": "^0.4.1",
     "@clack/prompts": "^0.9.1",
     "commander": "^14.0.3",
     "fs-extra": "^11.3.4",