@skillsmith/mcp-server 0.4.3 → 0.4.5

package/dist/src/tools/install.dep-helpers.js

@@ -0,0 +1,68 @@
+/**
+ * @fileoverview Dependency intelligence helpers for install tool
+ * @module @skillsmith/mcp-server/tools/install.dep-helpers
+ * @see SMI-3137: Wave 4 — Surface dependency intelligence in MCP responses
+ *
+ * Extracts and persists dependency data after successful skill installation.
+ * Kept in a companion file to avoid pushing install.ts over the 500-line limit.
+ */
+import { extractMcpReferences, mergeDependencies, } from '@skillsmith/core';
+/**
+ * Extract dependency intelligence from skill content after successful install.
+ *
+ * @param skillMdContent - Raw SKILL.md content
+ * @param metadata - Parsed frontmatter metadata (null if parsing failed)
+ * @returns Dependency intelligence data to include in install response
+ */
+export function extractDepIntel(skillMdContent, metadata) {
+    const mcpResult = extractMcpReferences(skillMdContent);
+    // Parse declared deps from metadata if present
+    const declared = metadata?.dependencies ?? undefined;
+    const warnings = [];
+    for (const server of mcpResult.highConfidenceServers) {
+        warnings.push(`MCP server '${server}' is referenced but may not be configured`);
+    }
+    return {
+        dep_inferred_servers: mcpResult.servers,
+        dep_declared: declared,
+        dep_warnings: warnings,
+    };
+}
+/**
+ * Persist merged dependencies (declared + inferred) to the database.
+ *
+ * Best-effort: silently returns if the skill_dependencies table does not
+ * exist (pre-migration databases).
+ *
+ * @param repo - SkillDependencyRepository instance
+ * @param skillId - Skill ID to associate dependencies with
+ * @param content - Raw SKILL.md content for MCP reference extraction
+ * @param declared - Parsed dependency declaration from frontmatter
+ */
+export function persistDependencies(repo, skillId, content, declared) {
+    const mcpResult = extractMcpReferences(content);
+    const merged = mergeDependencies(declared, mcpResult);
+    if (merged.length === 0)
+        return;
+    // Convert MergedDependency[] to SkillDependencyRow[] for the repository
+    const rows = merged.map((dep) => ({
+        skill_id: skillId,
+        dep_type: dep.depType,
+        dep_target: dep.depTarget,
+        dep_version: dep.depVersion,
+        dep_source: dep.depSource,
+        confidence: dep.confidence,
+        metadata: dep.metadata,
+    }));
+    // Group by source for setDependencies calls (each call stamps a single source)
+    const bySource = new Map();
+    for (const row of rows) {
+        const existing = bySource.get(row.dep_source) ?? [];
+        existing.push(row);
+        bySource.set(row.dep_source, existing);
+    }
+    for (const [source, sourceRows] of bySource) {
+        repo.setDependencies(skillId, sourceRows, source);
+    }
+}
+//# sourceMappingURL=install.dep-helpers.js.map

package/dist/src/tools/install.dep-helpers.js.map

@@ -0,0 +1 @@
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package/dist/src/tools/install.dep-helpers.test.d.ts

@@ -0,0 +1,6 @@
+/**
+ * @fileoverview Unit tests for install dependency intelligence helpers
+ * @see SMI-3137: Wave 4 — Surface dependency intelligence
+ */
+export {};
+//# sourceMappingURL=install.dep-helpers.test.d.ts.map

package/dist/src/tools/install.dep-helpers.test.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"install.dep-helpers.test.d.ts","sourceRoot":"","sources":["../../../src/tools/install.dep-helpers.test.ts"],"names":[],"mappings":"AAAA;;;GAGG"}

package/dist/src/tools/install.dep-helpers.test.js

@@ -0,0 +1,109 @@
+/**
+ * @fileoverview Unit tests for install dependency intelligence helpers
+ * @see SMI-3137: Wave 4 — Surface dependency intelligence
+ */
+import { describe, it, expect, vi, beforeEach } from 'vitest';
+import { extractDepIntel, persistDependencies } from './install.dep-helpers.js';
+// ============================================================================
+// extractDepIntel tests
+// ============================================================================
+describe('extractDepIntel', () => {
+    it('returns empty arrays when no MCP refs exist', () => {
+        const result = extractDepIntel('# Simple skill\n\nNo MCP references here.', null);
+        expect(result.dep_inferred_servers).toEqual([]);
+        expect(result.dep_declared).toBeUndefined();
+        expect(result.dep_warnings).toEqual([]);
+    });
+    it('detects inferred MCP servers from content', () => {
+        const content = `
+# My Skill
+
+Use mcp__linear__save_issue to create issues.
+Use mcp__slack__send_message for notifications.
+`;
+        const result = extractDepIntel(content, null);
+        expect(result.dep_inferred_servers).toContain('linear');
+        expect(result.dep_inferred_servers).toContain('slack');
+        expect(result.dep_warnings).toHaveLength(2);
+        expect(result.dep_warnings[0]).toContain('linear');
+        expect(result.dep_warnings[1]).toContain('slack');
+    });
+    it('passes through declared dependencies from metadata', () => {
+        const metadata = {
+            dependencies: {
+                skills: [{ name: 'other/skill', type: 'hard', version: '^1.0.0' }],
+                platform: {
+                    mcp_servers: [{ name: 'linear', package: '@anthropic/linear-mcp', required: true }],
+                },
+            },
+        };
+        const result = extractDepIntel('# Skill\n\nContent.', metadata);
+        expect(result.dep_declared).toBeDefined();
+        expect(result.dep_declared?.skills).toHaveLength(1);
+        expect(result.dep_declared?.platform?.mcp_servers).toHaveLength(1);
+    });
+    it('returns undefined dep_declared when metadata has no dependencies', () => {
+        const metadata = { name: 'test-skill' };
+        const result = extractDepIntel('# Skill\n\nContent.', metadata);
+        expect(result.dep_declared).toBeUndefined();
+    });
+    it('handles null metadata gracefully', () => {
+        const result = extractDepIntel('# Skill with mcp__github__create_issue ref', null);
+        expect(result.dep_declared).toBeUndefined();
+        expect(result.dep_inferred_servers).toContain('github');
+    });
+});
+// ============================================================================
+// persistDependencies tests
+// ============================================================================
+describe('persistDependencies', () => {
+    let mockRepo;
+    beforeEach(() => {
+        mockRepo = {
+            setDependencies: vi.fn(),
+            getDependencies: vi.fn().mockReturnValue([]),
+            getDependenciesBySource: vi.fn().mockReturnValue([]),
+            getDependents: vi.fn().mockReturnValue([]),
+            clearInferred: vi.fn(),
+            clearAll: vi.fn(),
+        };
+    });
+    it('does nothing when no dependencies are found', () => {
+        persistDependencies(mockRepo, 'test/skill', '# Simple skill\n\nNo deps.', undefined);
+        expect(mockRepo.setDependencies).not.toHaveBeenCalled();
+    });
+    it('persists inferred MCP dependencies', () => {
+        const content = '# Skill\n\nUse mcp__linear__save_issue for issues.';
+        persistDependencies(mockRepo, 'test/skill', content, undefined);
+        expect(mockRepo.setDependencies).toHaveBeenCalled();
+        const callArgs = vi.mocked(mockRepo.setDependencies).mock.calls[0];
+        expect(callArgs[0]).toBe('test/skill');
+        expect(callArgs[1]).toHaveLength(1);
+        expect(callArgs[1][0].dep_target).toBe('linear');
+        expect(callArgs[1][0].dep_type).toBe('mcp_server');
+        expect(callArgs[2]).toBe('inferred_static');
+    });
+    it('persists declared dependencies alongside inferred ones', () => {
+        const content = '# Skill\n\nUse mcp__slack__send_message for notifs.';
+        const declared = {
+            skills: [{ name: 'other/skill', type: 'hard', version: '^1.0.0' }],
+        };
+        persistDependencies(mockRepo, 'test/skill', content, declared);
+        // Should be called once for 'declared' source, once for 'inferred_static' source
+        expect(mockRepo.setDependencies).toHaveBeenCalledTimes(2);
+    });
+    it('deduplicates declared MCP servers over inferred', () => {
+        const content = '# Skill\n\nUse mcp__linear__save_issue for issues.';
+        const declared = {
+            platform: {
+                mcp_servers: [{ name: 'linear', package: '@a/b', required: true }],
+            },
+        };
+        persistDependencies(mockRepo, 'test/skill', content, declared);
+        // Only declared source should be called (linear is deduplicated)
+        expect(mockRepo.setDependencies).toHaveBeenCalledTimes(1);
+        const callArgs = vi.mocked(mockRepo.setDependencies).mock.calls[0];
+        expect(callArgs[2]).toBe('declared');
+    });
+});
+//# sourceMappingURL=install.dep-helpers.test.js.map

package/dist/src/tools/install.dep-helpers.test.js.map

@@ -0,0 +1 @@
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package/dist/src/tools/install.helpers.d.ts

@@ -41,6 +41,12 @@ export declare function parseSkillId(input: string): ParsedSkillId;
  * Follows API-first pattern: tries live API, falls back to local DB
  */
 export declare function lookupSkillFromRegistry(skillId: string, context: ToolContext): Promise<RegistrySkillInfo | null>;
+/**
+ * SMI-3221: Detect git-crypt encrypted content fetched from GitHub.
+ * raw.githubusercontent.com serves encrypted bytes for repos using git-crypt.
+ * The magic header is \x00GITCRYPT (hex 00474954435259505400).
+ */
+export declare function assertNotEncrypted(content: string, filePath: string): void;
 /**
  * Fetch file from GitHub
  * SMI-1491: Added optional branch parameter to use branch from repo_url

package/dist/src/tools/install.helpers.d.ts.map

@@ -1 +1 @@
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package/dist/src/tools/install.helpers.js

@@ -221,6 +221,21 @@ export async function lookupSkillFromRegistry(skillId, context) {
 // ============================================================================
 // GitHub Fetching
 // ============================================================================
+/**
+ * SMI-3221: Detect git-crypt encrypted content fetched from GitHub.
+ * raw.githubusercontent.com serves encrypted bytes for repos using git-crypt.
+ * The magic header is \x00GITCRYPT (hex 00474954435259505400).
+ */
+export function assertNotEncrypted(content, filePath) {
+    if (content.startsWith('\x00GITCRYPT')) {
+        throw new Error('File "' +
+            filePath +
+            '" is git-crypt encrypted. ' +
+            'The repository uses git-crypt and this file cannot be fetched from GitHub. ' +
+            'Workaround: clone the repo locally, unlock with git-crypt, then install with:\n' +
+            '  cp -r /path/to/repo/.claude/skills/<skill-name> ~/.claude/skills/<skill-name>');
+    }
+}
 /**
  * Fetch file from GitHub
  * SMI-1491: Added optional branch parameter to use branch from repo_url
@@ -236,11 +251,15 @@ export async function fetchFromGitHub(owner, repo, filePath, branch = 'main') {
             if (!masterResponse.ok) {
                 throw new Error('Failed to fetch ' + filePath + ': ' + response.status);
             }
-            return masterResponse.text();
+            const masterText = await masterResponse.text();
+            assertNotEncrypted(masterText, filePath);
+            return masterText;
         }
         throw new Error('Failed to fetch ' + filePath + ': ' + response.status);
     }
-    return response.text();
+    const text = await response.text();
+    assertNotEncrypted(text, filePath);
+    return text;
 }
 /**
  * Validate SKILL.md content

package/dist/src/tools/install.helpers.js.map

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package/dist/src/tools/install.js

@@ -1,15 +1,8 @@
 /**
  * @fileoverview MCP Install Skill Tool for downloading and installing skills
  * @module @skillsmith/mcp-server/tools/install
- * @see {@link https://github.com/wrsmith108/skillsmith|Skillsmith Repository}
  * @see SMI-2741: Split to meet 500-line standard
- *
- * Provides skill installation functionality with:
- * - GitHub repository fetching (supports owner/repo and full URLs)
- * - Automatic security scanning before installation
- * - SKILL.md validation
- * - Manifest tracking of installed skills
- * - Optional file fetching (README.md, examples.md, config.json)
+ * @see SMI-3137: Wave 4 — Dependency intelligence persistence
  *
  * Skills are installed to ~/.claude/skills/ and tracked in ~/.skillsmith/manifest.json
  */
@@ -18,14 +11,14 @@ import * as fs from 'fs/promises';
 import * as path from 'path';
 import * as os from 'os';
 import { getToolContext } from '../context.js';
-// Import types
 import { TRUST_TIER_SCANNER_OPTIONS, CLAUDE_SKILLS_DIR, } from './install.types.js';
-// Import helpers
 import { loadManifest, updateManifestSafely, parseSkillId, parseRepoUrl, lookupSkillFromRegistry, fetchFromGitHub, validateSkillMd, generateOptimizedTips, hashContent, storeOriginal, } from './install.helpers.js';
 // SMI-1867: Conflict resolution logic (extracted per governance review)
 import { checkForConflicts, handleMergeAction } from './install.conflict.js';
 // SMI-1788/SMI-2741: Optimization layer extracted to companion file
 import { applySkillOptimization } from './install.optimize.js';
+// SMI-3137: Dependency intelligence persistence
+import { extractDepIntel, persistDependencies } from './install.dep-helpers.js';
 // SMI-2741: MCP tool definition extracted to companion file
 export { installTool } from './install.tool.js';
 export { default } from './install.tool.js';
@@ -34,21 +27,9 @@ export { installInputSchema } from './install.types.js';
 /**
  * Install a skill from GitHub to the local Claude Code skills directory.
  *
- * This function:
- * 1. Parses the skill ID or GitHub URL
- * 2. Checks if already installed (returns error unless force=true)
- * 3. Fetches SKILL.md from GitHub (required)
- * 4. Validates SKILL.md content
- * 5. Runs security scan (unless skipScan=true)
- * 6. Creates installation directory at ~/.claude/skills/{skillName}
- * 7. Writes skill files
- * 8. Updates manifest at ~/.skillsmith/manifest.json
- *
- * @param input - Installation parameters
- * @param input.skillId - Skill ID (owner/repo) or full GitHub URL
- * @param input.force - Force reinstall if skill already exists (default: false)
- * @param input.skipScan - Skip security scan (default: false, not recommended)
- * @returns Promise resolving to installation result with success status
+ * @param input - Installation parameters (skillId, force, skipScan)
+ * @param _context - Optional tool context (falls back to singleton)
+ * @returns Installation result with success status, security report, and dep intel
  */
 export async function installSkill(input, _context) {
     // SMI-1491: Get context for registry lookup (use provided or fallback to singleton)
@@ -368,6 +349,14 @@ export async function installSkill(input, _context) {
             input.skillId,
         ]);
         context.sessionInstalledSkillIds.push(input.skillId);
+        // SMI-3137: Extract and persist dependency intelligence
+        const depIntel = extractDepIntel(skillMdContent, null);
+        try {
+            persistDependencies(context.skillDependencyRepository, input.skillId, skillMdContent, depIntel.dep_declared);
+        }
+        catch {
+            // Dependency persistence is best-effort
+        }
         return {
             success: true,
             skillId: input.skillId,
@@ -376,6 +365,7 @@ export async function installSkill(input, _context) {
             trustTier, // SMI-1533: Include trust tier in result
             optimization: optimizationInfo,
             backupPath, // SMI-1895: Include backup path if created during conflict resolution
+            depIntel, // SMI-3137: Dependency intelligence
             tips: generateOptimizedTips(skillName, optimizationInfo, claudeMdSnippet),
         };
     }
@@ -384,19 +374,21 @@ export async function installSkill(input, _context) {
         let safeErrorMessage = 'Installation failed';
         if (error instanceof Error) {
             // Allow specific known error types through
-            if (error.message.includes('already installed') ||
-                error.message.includes('Could not find SKILL.md') ||
-                error.message.includes('registry data quality issue') ||
-                error.message.includes('Invalid SKILL.md') ||
-                error.message.includes('Security scan failed') ||
-                error.message.includes('exceeds maximum length') ||
-                error.message.includes('Refusing to write to symlink') ||
-                error.message.includes('Refusing to write to hardlinked file') ||
-                error.message.includes('Install path escapes skills directory')) {
+            const knownPrefixes = [
+                'already installed',
+                'Could not find SKILL.md',
+                'registry data quality issue',
+                'Invalid SKILL.md',
+                'Security scan failed',
+                'exceeds maximum length',
+                'Refusing to write to symlink',
+                'Refusing to write to hardlinked file',
+                'Install path escapes skills directory',
+            ];
+            if (knownPrefixes.some((p) => error.message.includes(p))) {
                 safeErrorMessage = error.message;
             }
             else {
-                // Log the full error for debugging, return sanitized message
                 console.error('[install] Error during installation:', error);
                 safeErrorMessage = 'Installation failed due to an internal error';
             }

package/dist/src/tools/install.js.map

@@ -1 +1 @@
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package/dist/src/tools/install.types.d.ts

@@ -116,6 +116,8 @@ export interface InstallResult {
     requiresAction?: ConflictAction[];
     /** SMI-1895: Path to backup file created during conflict resolution */
     backupPath?: string;
+    /** SMI-3137: Dependency intelligence extracted during install */
+    depIntel?: import('./install.dep-helpers.js').DepIntelResult;
 }
 /** Optimization info included in install result */
 export interface OptimizationInfo {
@@ -145,6 +147,11 @@ export interface SkillManifestEntry {
     name: string;
     version: string;
     source: string;
+    /**
+     * Absolute path where the skill is installed.
+     * Required by type, but runtime JSON may omit it — consumers must guard.
+     * @see SMI-3177
+     */
     installPath: string;
     installedAt: string;
     lastUpdated: string;

package/dist/src/tools/install.types.d.ts.map

@@ -1 +1 @@
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package/dist/src/tools/install.types.js.map

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package/dist/src/tools/merge.test.d.ts

@@ -0,0 +1,9 @@
+/**
+ * SMI-3416: Three-Way Merge Algorithm Tests
+ *
+ * Tests for LCS-based diff3 merge in merge.ts:
+ * - computeDiff: line-level diff between two texts
+ * - threeWayMerge: three-way merge with conflict detection
+ */
+export {};
+//# sourceMappingURL=merge.test.d.ts.map

package/dist/src/tools/merge.test.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"merge.test.d.ts","sourceRoot":"","sources":["../../../src/tools/merge.test.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG"}