@skillsmith/core 0.5.5 → 0.5.6

package/dist/repositories/IndexerRepository.d.ts

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+/**
+ * SMI-628: IndexerRepository - Database operations for skill indexing
+ *
+ * Provides:
+ * - Upsert skills with conflict resolution on repo_url
+ * - Track last_indexed_at for incremental updates
+ * - Store raw SKILL.md content for re-parsing
+ * - Batch operations for efficient bulk indexing
+ */
+import type { Database as DatabaseType } from '../db/database-interface.js';
+import type { Skill, TrustTier } from '../types/skill.js';
+import type { SkillMetadata } from '../indexer/GitHubIndexer.js';
+/**
+ * Extended skill with indexing metadata
+ */
+export interface IndexedSkill extends Skill {
+    /**
+     * When the skill was last indexed from source
+     */
+    lastIndexedAt: string;
+    /**
+     * SHA of the source file for change detection
+     */
+    sourceSha: string | null;
+    /**
+     * Path to the source file in the repository
+     */
+    sourceFilePath: string | null;
+    /**
+     * Raw content of the SKILL.md file
+     */
+    rawContent: string | null;
+}
+/**
+ * Upsert result
+ */
+export interface UpsertResult {
+    /**
+     * Whether this was an insert (true) or update (false)
+     */
+    inserted: boolean;
+    /**
+     * The resulting skill
+     */
+    skill: IndexedSkill;
+    /**
+     * Whether the content changed (for updates)
+     */
+    contentChanged: boolean;
+}
+/**
+ * Batch upsert result
+ */
+export interface BatchUpsertResult {
+    /**
+     * Total skills processed
+     */
+    total: number;
+    /**
+     * Number of new skills inserted
+     */
+    inserted: number;
+    /**
+     * Number of existing skills updated
+     */
+    updated: number;
+    /**
+     * Number of skills unchanged (same SHA)
+     */
+    unchanged: number;
+    /**
+     * Any errors that occurred
+     */
+    errors: Array<{
+        repoUrl: string;
+        error: string;
+    }>;
+}
+/**
+ * Repository for indexer-specific database operations
+ */
+export declare class IndexerRepository {
+    private db;
+    private migrationApplied;
+    constructor(db: DatabaseType);
+    private stmts;
+    /**
+     * Ensure the indexer columns exist
+     */
+    private ensureMigration;
+    private prepareStatements;
+    /**
+     * Convert a database row to an IndexedSkill object
+     * SMI-825: Added security scan fields
+     */
+    private rowToSkill;
+    /**
+     * Upsert a skill from indexer metadata
+     */
+    upsertFromMetadata(metadata: SkillMetadata, trustTier?: TrustTier): UpsertResult;
+    /**
+     * Batch upsert skills from indexer metadata
+     */
+    batchUpsertFromMetadata(metadataList: SkillMetadata[]): BatchUpsertResult;
+    /**
+     * Find skills that need reindexing
+     */
+    findNeedingReindex(olderThan?: string, limit?: number): IndexedSkill[];
+    /**
+     * Find skill by repository URL
+     */
+    findByRepoUrl(repoUrl: string): IndexedSkill | null;
+    /**
+     * Find skill by source SHA
+     */
+    findBySha(sha: string): IndexedSkill | null;
+    /**
+     * Get all indexed skills with pagination
+     */
+    findAllIndexed(limit?: number, offset?: number): IndexedSkill[];
+    /**
+     * Calculate quality score from metadata
+     */
+    private calculateQualityScore;
+}
+export default IndexerRepository;
+//# sourceMappingURL=IndexerRepository.d.ts.map

package/dist/repositories/IndexerRepository.d.ts.map

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package/dist/repositories/IndexerRepository.js

@@ -0,0 +1,281 @@
+/**
+ * SMI-628: IndexerRepository - Database operations for skill indexing
+ *
+ * Provides:
+ * - Upsert skills with conflict resolution on repo_url
+ * - Track last_indexed_at for incremental updates
+ * - Store raw SKILL.md content for re-parsing
+ * - Batch operations for efficient bulk indexing
+ */
+import { randomUUID } from 'crypto';
+/**
+ * Repository for indexer-specific database operations
+ */
+export class IndexerRepository {
+    db;
+    migrationApplied = false;
+    constructor(db) {
+        this.db = db;
+        this.ensureMigration();
+        this.prepareStatements();
+    }
+    stmts;
+    /**
+     * Ensure the indexer columns exist
+     */
+    ensureMigration() {
+        if (this.migrationApplied)
+            return;
+        // Check if columns exist
+        const columns = this.db.pragma('table_info(skills)');
+        const columnNames = columns.map((c) => c.name);
+        // Add missing columns
+        if (!columnNames.includes('last_indexed_at')) {
+            this.db.exec('ALTER TABLE skills ADD COLUMN last_indexed_at TEXT');
+        }
+        if (!columnNames.includes('source_sha')) {
+            this.db.exec('ALTER TABLE skills ADD COLUMN source_sha TEXT');
+        }
+        if (!columnNames.includes('source_file_path')) {
+            this.db.exec('ALTER TABLE skills ADD COLUMN source_file_path TEXT');
+        }
+        if (!columnNames.includes('raw_content')) {
+            this.db.exec('ALTER TABLE skills ADD COLUMN raw_content TEXT');
+        }
+        // Add index for faster lookups
+        this.db.exec(`
+      CREATE INDEX IF NOT EXISTS idx_skills_last_indexed ON skills(last_indexed_at);
+      CREATE INDEX IF NOT EXISTS idx_skills_source_sha ON skills(source_sha);
+    `);
+        this.migrationApplied = true;
+    }
+    prepareStatements() {
+        this.stmts = {
+            selectByRepoUrl: this.db.prepare(`
+        SELECT * FROM skills WHERE repo_url = ?
+      `),
+            selectBySha: this.db.prepare(`
+        SELECT * FROM skills WHERE source_sha = ?
+      `),
+            insertIndexed: this.db.prepare(`
+        INSERT INTO skills (
+          id, name, description, author, repo_url, quality_score,
+          trust_tier, tags, created_at, updated_at,
+          last_indexed_at, source_sha, source_file_path, raw_content
+        ) VALUES (
+          ?, ?, ?, ?, ?, ?,
+          ?, ?, datetime('now'), datetime('now'),
+          datetime('now'), ?, ?, ?
+        )
+      `),
+            updateIndexed: this.db.prepare(`
+        UPDATE skills SET
+          name = ?,
+          description = ?,
+          author = ?,
+          quality_score = ?,
+          trust_tier = ?,
+          tags = ?,
+          updated_at = datetime('now'),
+          last_indexed_at = datetime('now'),
+          source_sha = ?,
+          source_file_path = ?,
+          raw_content = ?
+        WHERE repo_url = ?
+      `),
+            selectNeedingReindex: this.db.prepare(`
+        SELECT * FROM skills
+        WHERE last_indexed_at IS NULL
+           OR last_indexed_at < datetime('now', ?)
+        ORDER BY last_indexed_at ASC NULLS FIRST
+        LIMIT ?
+      `),
+            selectAll: this.db.prepare(`
+        SELECT * FROM skills
+        WHERE last_indexed_at IS NOT NULL
+        ORDER BY last_indexed_at DESC
+        LIMIT ? OFFSET ?
+      `),
+            updateLastIndexed: this.db.prepare(`
+        UPDATE skills SET last_indexed_at = datetime('now') WHERE id = ?
+      `),
+        };
+    }
+    /**
+     * Convert a database row to an IndexedSkill object
+     * SMI-825: Added security scan fields
+     */
+    rowToSkill(row) {
+        return {
+            id: row.id,
+            name: row.name,
+            description: row.description,
+            author: row.author,
+            repoUrl: row.repo_url,
+            qualityScore: row.quality_score,
+            trustTier: row.trust_tier,
+            tags: JSON.parse(row.tags || '[]'),
+            installable: row.installable ?? false,
+            // SMI-825: Security scan fields
+            riskScore: row.risk_score,
+            securityFindingsCount: row.security_findings_count ?? 0,
+            securityScannedAt: row.security_scanned_at,
+            securityPassed: row.security_passed === null ? null : row.security_passed === 1,
+            createdAt: row.created_at,
+            updatedAt: row.updated_at,
+            lastIndexedAt: row.last_indexed_at ?? row.updated_at,
+            sourceSha: row.source_sha,
+            sourceFilePath: row.source_file_path,
+            rawContent: row.raw_content,
+        };
+    }
+    /**
+     * Upsert a skill from indexer metadata
+     */
+    upsertFromMetadata(metadata, trustTier) {
+        const existing = this.stmts.selectByRepoUrl.get(metadata.repoUrl);
+        if (existing) {
+            // Check if content changed
+            if (existing.source_sha === metadata.sha) {
+                // Just update the timestamp
+                this.stmts.updateLastIndexed.run(existing.id);
+                return {
+                    inserted: false,
+                    skill: this.rowToSkill({ ...existing, last_indexed_at: new Date().toISOString() }),
+                    contentChanged: false,
+                };
+            }
+            // Update with new content
+            const tags = JSON.stringify(metadata.tags);
+            this.stmts.updateIndexed.run(metadata.name, metadata.description, metadata.author ?? metadata.owner, this.calculateQualityScore(metadata), trustTier ?? 'unknown', tags, metadata.sha, metadata.filePath, metadata.rawContent, metadata.repoUrl);
+            const updated = this.stmts.selectByRepoUrl.get(metadata.repoUrl);
+            return {
+                inserted: false,
+                skill: this.rowToSkill(updated),
+                contentChanged: true,
+            };
+        }
+        // Insert new skill
+        const id = randomUUID();
+        const tags = JSON.stringify(metadata.tags);
+        this.stmts.insertIndexed.run(id, metadata.name, metadata.description, metadata.author ?? metadata.owner, metadata.repoUrl, this.calculateQualityScore(metadata), trustTier ?? 'unknown', tags, metadata.sha, metadata.filePath, metadata.rawContent);
+        const inserted = this.stmts.selectByRepoUrl.get(metadata.repoUrl);
+        return {
+            inserted: true,
+            skill: this.rowToSkill(inserted),
+            contentChanged: true,
+        };
+    }
+    /**
+     * Batch upsert skills from indexer metadata
+     */
+    batchUpsertFromMetadata(metadataList) {
+        const result = {
+            total: metadataList.length,
+            inserted: 0,
+            updated: 0,
+            unchanged: 0,
+            errors: [],
+        };
+        const transaction = this.db.transaction((items) => {
+            for (const metadata of items) {
+                try {
+                    const upsertResult = this.upsertFromMetadata(metadata);
+                    if (upsertResult.inserted) {
+                        result.inserted++;
+                    }
+                    else if (upsertResult.contentChanged) {
+                        result.updated++;
+                    }
+                    else {
+                        result.unchanged++;
+                    }
+                }
+                catch (error) {
+                    result.errors.push({
+                        repoUrl: metadata.repoUrl,
+                        error: error instanceof Error ? error.message : String(error),
+                    });
+                }
+            }
+        });
+        transaction(metadataList);
+        return result;
+    }
+    /**
+     * Find skills that need reindexing
+     */
+    findNeedingReindex(olderThan = '-7 days', limit = 100) {
+        const rows = this.stmts.selectNeedingReindex.all(olderThan, limit);
+        return rows.map((row) => this.rowToSkill(row));
+    }
+    /**
+     * Find skill by repository URL
+     */
+    findByRepoUrl(repoUrl) {
+        const row = this.stmts.selectByRepoUrl.get(repoUrl);
+        return row ? this.rowToSkill(row) : null;
+    }
+    /**
+     * Find skill by source SHA
+     */
+    findBySha(sha) {
+        const row = this.stmts.selectBySha.get(sha);
+        return row ? this.rowToSkill(row) : null;
+    }
+    /**
+     * Get all indexed skills with pagination
+     */
+    findAllIndexed(limit = 20, offset = 0) {
+        const rows = this.stmts.selectAll.all(limit, offset);
+        return rows.map((row) => this.rowToSkill(row));
+    }
+    /**
+     * Calculate quality score from metadata
+     */
+    calculateQualityScore(metadata) {
+        let score = 0;
+        // Has description (20 points)
+        if (metadata.description && metadata.description.length > 0) {
+            score += 10;
+            if (metadata.description.length > 100)
+                score += 10;
+        }
+        // Has tags (15 points)
+        if (metadata.tags.length > 0) {
+            score += 5;
+            if (metadata.tags.length >= 3)
+                score += 5;
+            if (metadata.tags.length >= 5)
+                score += 5;
+        }
+        // Has version (10 points)
+        if (metadata.version)
+            score += 10;
+        // Has author (10 points)
+        if (metadata.author)
+            score += 10;
+        // Has license (10 points)
+        if (metadata.license)
+            score += 10;
+        // Has dependencies (10 points)
+        if (metadata.dependencies &&
+            (metadata.dependencies.skills?.length ||
+                metadata.dependencies.platform ||
+                metadata.dependencies.models ||
+                metadata.dependencies.environment))
+            score += 10;
+        // Has category (10 points)
+        if (metadata.category)
+            score += 10;
+        // Has documentation (15 points)
+        if (metadata.rawContent.length > 500) {
+            score += 10;
+            if (metadata.rawContent.length > 1000)
+                score += 5;
+        }
+        return Math.min(score, 100) / 100;
+    }
+}
+export default IndexerRepository;
+//# sourceMappingURL=IndexerRepository.js.map

package/dist/repositories/IndexerRepository.js.map

@@ -0,0 +1 @@
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package/dist/repositories/QuarantineRepository.d.ts

@@ -0,0 +1,8 @@
+/**
+ * SMI-865: Quarantine Repository
+ *
+ * Re-exports from quarantine module for backward compatibility.
+ * See quarantine/ subdirectory for implementation.
+ */
+export * from './quarantine/index.js';
+//# sourceMappingURL=QuarantineRepository.d.ts.map

package/dist/repositories/QuarantineRepository.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"QuarantineRepository.d.ts","sourceRoot":"","sources":["../../src/repositories/QuarantineRepository.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,cAAc,uBAAuB,CAAA"}

package/dist/repositories/QuarantineRepository.js

@@ -0,0 +1,8 @@
+/**
+ * SMI-865: Quarantine Repository
+ *
+ * Re-exports from quarantine module for backward compatibility.
+ * See quarantine/ subdirectory for implementation.
+ */
+export * from './quarantine/index.js';
+//# sourceMappingURL=QuarantineRepository.js.map

package/dist/repositories/QuarantineRepository.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"QuarantineRepository.js","sourceRoot":"","sources":["../../src/repositories/QuarantineRepository.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,cAAc,uBAAuB,CAAA"}

package/dist/repositories/RiskScoreHistoryRepository.d.ts

@@ -0,0 +1,37 @@
+/**
+ * @fileoverview Risk Score History Repository
+ * @module @skillsmith/core/repositories/RiskScoreHistoryRepository
+ * @see SMI-3864: Security-informed quality scoring
+ *
+ * CRUD operations for the risk_score_history table.
+ * Records point-in-time snapshots after each security scan
+ * for trend detection and supply chain attack monitoring.
+ */
+import type { Database } from '../db/database-interface.js';
+export interface RiskScoreSnapshot {
+    id: number;
+    skillId: string;
+    riskScore: number;
+    findingsCount: number;
+    contentHash: string | null;
+    scannedAt: string;
+    source: 'install' | 'indexer' | 'rescan';
+}
+export declare class RiskScoreHistoryRepository {
+    private readonly db;
+    constructor(db: Database);
+    /**
+     * Record a risk score snapshot. Prunes old entries to cap at
+     * MAX_HISTORY_PER_SKILL per skill (Review #7).
+     */
+    record(snapshot: Omit<RiskScoreSnapshot, 'id'>): void;
+    /**
+     * Get risk score history for a skill, most recent first.
+     */
+    getHistory(skillId: string, limit?: number): RiskScoreSnapshot[];
+    /**
+     * Get the most recent risk score snapshot for a skill.
+     */
+    getLatest(skillId: string): RiskScoreSnapshot | null;
+}
+//# sourceMappingURL=RiskScoreHistoryRepository.d.ts.map

package/dist/repositories/RiskScoreHistoryRepository.d.ts.map

@@ -0,0 +1 @@
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package/dist/repositories/RiskScoreHistoryRepository.js

@@ -0,0 +1,66 @@
+/**
+ * @fileoverview Risk Score History Repository
+ * @module @skillsmith/core/repositories/RiskScoreHistoryRepository
+ * @see SMI-3864: Security-informed quality scoring
+ *
+ * CRUD operations for the risk_score_history table.
+ * Records point-in-time snapshots after each security scan
+ * for trend detection and supply chain attack monitoring.
+ */
+/** Maximum history entries per skill before pruning (Review #7) */
+const MAX_HISTORY_PER_SKILL = 100;
+export class RiskScoreHistoryRepository {
+    db;
+    constructor(db) {
+        this.db = db;
+    }
+    /**
+     * Record a risk score snapshot. Prunes old entries to cap at
+     * MAX_HISTORY_PER_SKILL per skill (Review #7).
+     */
+    record(snapshot) {
+        this.db
+            .prepare(`INSERT INTO risk_score_history (skill_id, risk_score, findings_count, content_hash, scanned_at, source)
+         VALUES (?, ?, ?, ?, ?, ?)`)
+            .run(snapshot.skillId, snapshot.riskScore, snapshot.findingsCount, snapshot.contentHash, snapshot.scannedAt, snapshot.source);
+        // Prune old entries beyond the cap
+        this.db
+            .prepare(`DELETE FROM risk_score_history
+         WHERE skill_id = ? AND id NOT IN (
+           SELECT id FROM risk_score_history
+           WHERE skill_id = ?
+           ORDER BY scanned_at DESC
+           LIMIT ?
+         )`)
+            .run(snapshot.skillId, snapshot.skillId, MAX_HISTORY_PER_SKILL);
+    }
+    /**
+     * Get risk score history for a skill, most recent first.
+     */
+    getHistory(skillId, limit = 50) {
+        const rows = this.db
+            .prepare(`SELECT id, skill_id, risk_score, findings_count, content_hash, scanned_at, source
+         FROM risk_score_history
+         WHERE skill_id = ?
+         ORDER BY scanned_at DESC
+         LIMIT ?`)
+            .all(skillId, limit);
+        return rows.map((row) => ({
+            id: row.id,
+            skillId: row.skill_id,
+            riskScore: row.risk_score,
+            findingsCount: row.findings_count,
+            contentHash: row.content_hash,
+            scannedAt: row.scanned_at,
+            source: row.source,
+        }));
+    }
+    /**
+     * Get the most recent risk score snapshot for a skill.
+     */
+    getLatest(skillId) {
+        const rows = this.getHistory(skillId, 1);
+        return rows.length > 0 ? rows[0] : null;
+    }
+}
+//# sourceMappingURL=RiskScoreHistoryRepository.js.map

package/dist/repositories/RiskScoreHistoryRepository.js.map

@@ -0,0 +1 @@
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package/dist/repositories/SkillDependencyRepository.d.ts

@@ -0,0 +1,73 @@
+/**
+ * @fileoverview SkillDependencyRepository — CRUD for skill_dependencies table
+ * @module @skillsmith/core/repositories/SkillDependencyRepository
+ * @see SMI-3143: Create SkillDependencyRepository CRUD
+ *
+ * Reads and writes dependency records from the skill_dependencies table
+ * (migration v10). Follows the CoInstallRepository pattern: constructor
+ * takes a DatabaseType, and all methods gracefully handle a missing table
+ * by returning empty results instead of throwing.
+ */
+import type { Database as DatabaseType } from '../db/database-interface.js';
+import type { SkillDependencyRow, DepSource } from '../types/dependencies.js';
+/**
+ * Repository for reading and writing skill dependency records.
+ *
+ * Gracefully handles databases where the skill_dependencies table has not
+ * been created yet (returns empty results instead of throwing). This allows
+ * test contexts that use createDatabase() directly (without running all
+ * migrations) to work without errors.
+ */
+export declare class SkillDependencyRepository {
+    private db;
+    constructor(db: DatabaseType);
+    /**
+     * Set (upsert) dependencies for a skill from a given source.
+     *
+     * Uses INSERT OR REPLACE on the unique index
+     * (skill_id, dep_type, dep_target, dep_source) so repeated calls
+     * with the same key are idempotent.
+     *
+     * @param skillId - The skill these dependencies belong to
+     * @param deps - Array of dependency rows to upsert
+     * @param source - The dep_source value to stamp on each row
+     */
+    setDependencies(skillId: string, deps: SkillDependencyRow[], source: DepSource): void;
+    /**
+     * Get all dependencies for a skill, ordered by dep_type.
+     *
+     * @param skillId - The skill to look up dependencies for
+     * @returns Array of dependency rows, or empty array if table missing
+     */
+    getDependencies(skillId: string): SkillDependencyRow[];
+    /**
+     * Get dependencies for a skill filtered by source.
+     *
+     * @param skillId - The skill to look up dependencies for
+     * @param source - Filter by dep_source value
+     * @returns Array of dependency rows matching the source
+     */
+    getDependenciesBySource(skillId: string, source: DepSource): SkillDependencyRow[];
+    /**
+     * Reverse lookup: find all skills that depend on a given target.
+     *
+     * @param depTarget - The dependency target to search for
+     * @param depType - Optional dep_type filter
+     * @returns Array of dependency rows where dep_target matches
+     */
+    getDependents(depTarget: string, depType?: string): SkillDependencyRow[];
+    /**
+     * Delete only inferred dependencies for a skill.
+     * Preserves declared dependencies.
+     *
+     * @param skillId - The skill to clear inferred deps for
+     */
+    clearInferred(skillId: string): void;
+    /**
+     * Delete all dependencies for a skill.
+     *
+     * @param skillId - The skill to clear all deps for
+     */
+    clearAll(skillId: string): void;
+}
+//# sourceMappingURL=SkillDependencyRepository.d.ts.map

package/dist/repositories/SkillDependencyRepository.d.ts.map

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