@skillsmith/core 0.4.14 → 0.4.15

package/dist/src/learning/PatternStore.js

@@ -4,8 +4,8 @@ import { EmbeddingService } from '../embeddings/index.js';
 export { DEFAULT_EWC_CONFIG, DEFAULT_PATTERN_STORE_CONFIG, PATTERN_REWARDS, } from './PatternStore.types.js';
 export { FisherInformationMatrix } from './PatternStore.helpers.js';
 import { DEFAULT_EWC_CONFIG, DEFAULT_PATTERN_STORE_CONFIG } from './PatternStore.types.js';
-import { PATTERN_STORE_SCHEMA, FisherInformationMatrix, contextToText, computeGradient, deserializeEmbedding, cosineSimilarity, importanceWeightedSimilarity, calculatePatternImportance, calculateDimensionImportance, rowToStoredPattern, } from './PatternStore.helpers.js';
-import { getPatternCount, getDatabaseSize, getSamplePatterns, getAllPatterns, updatePatternInDB, updatePatternImportance, updateAccessCount, deletePattern, loadFisherMatrixData, saveFisherMatrixData, recordConsolidation, getPatternsByOutcome, getAverageImportance, getHighImportanceCount, getConsolidationStats, getContextEmbeddings, } from './PatternStore.queries.js';
+import { PATTERN_STORE_SCHEMA, FisherInformationMatrix, contextToText, computeGradient, deserializeEmbedding, cosineSimilarity, importanceWeightedSimilarity, calculatePatternImportance, calculateDimensionImportance, rowToStoredPattern, computeAverageEmbedding, shouldConsolidate, } from './PatternStore.helpers.js';
+import { getPatternCount, getDatabaseSize, getSamplePatterns, getAllPatterns, updatePatternInDB, updatePatternImportance, updateAccessCount, deletePattern, loadFisherMatrixData, saveFisherMatrixData, recordConsolidation, getPatternsByOutcome, getAverageImportance, getHighImportanceCount, getConsolidationStats, } from './PatternStore.queries.js';
 /** PatternStore - EWC++ pattern storage for successful recommendation matches */
 export class PatternStore {
     db;
@@ -102,12 +102,12 @@ export class PatternStore {
       ) VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, 0, unixepoch(), unixepoch())
     `);
         stmt.run(patternId, Buffer.from(contextEmbedding.buffer), pattern.skill.skillId, JSON.stringify(pattern.skill), JSON.stringify(pattern.context), outcome.type, outcome.reward, importance, pattern.originalScore, pattern.source);
-        const avgEmbedding = await this.computeAverageEmbedding();
+        const avgEmbedding = await computeAverageEmbedding(this.db, 100, this.config.dimensions);
         const gradient = computeGradient(contextEmbedding, avgEmbedding);
         this.fisherMatrix.update(gradient);
         this.consolidationState.patternsSinceLastConsolidation++;
         this.consolidationState.totalPatterns++;
-        if (this.config.autoConsolidate && this.shouldConsolidate()) {
+        if (this.config.autoConsolidate && shouldConsolidate(this.consolidationState, this.ewcConfig)) {
             await this.consolidate();
         }
         this.saveFisherMatrix();
@@ -188,7 +188,7 @@ export class PatternStore {
         }
         this.fisherMatrix.decay(this.ewcConfig.fisherDecay);
         const samplePatterns = getSamplePatterns(this.db, this.ewcConfig.fisherSampleSize, this.config.dimensions);
-        const avgEmbedding = await this.computeAverageEmbedding();
+        const avgEmbedding = await computeAverageEmbedding(this.db, 100, this.config.dimensions);
         for (const pattern of samplePatterns) {
             const gradient = computeGradient(pattern.contextEmbedding, avgEmbedding);
             this.fisherMatrix.update(gradient);
@@ -294,38 +294,6 @@ export class PatternStore {
             throw new Error('PatternStore not initialized. Call initialize() first.');
         }
     }
-    async computeAverageEmbedding() {
-        const rows = getContextEmbeddings(this.db, 100);
-        if (rows.length === 0) {
-            return new Float32Array(this.config.dimensions);
-        }
-        const sum = new Float32Array(this.config.dimensions);
-        for (const row of rows) {
-            const embedding = deserializeEmbedding(row.context_embedding, this.config.dimensions);
-            for (let i = 0; i < embedding.length; i++) {
-                sum[i] += embedding[i];
-            }
-        }
-        for (let i = 0; i < sum.length; i++) {
-            sum[i] /= rows.length;
-        }
-        return sum;
-    }
-    shouldConsolidate() {
-        if (this.consolidationState.lastConsolidation) {
-            const hoursSinceLast = (Date.now() - this.consolidationState.lastConsolidation.getTime()) / (60 * 60 * 1000);
-            if (hoursSinceLast < 1)
-                return false;
-        }
-        if (this.consolidationState.totalPatterns === 0)
-            return false;
-        const newPatternsRatio = this.consolidationState.patternsSinceLastConsolidation / this.consolidationState.totalPatterns;
-        if (newPatternsRatio >= this.ewcConfig.consolidationThreshold)
-            return true;
-        if (this.consolidationState.totalPatterns > this.ewcConfig.maxPatterns * 0.9)
-            return true;
-        return false;
-    }
     loadFisherMatrix() {
         const matrixData = loadFisherMatrixData(this.db);
         if (matrixData) {

package/dist/src/learning/PatternStore.js.map

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package/dist/src/repositories/AdvisoryRepository.d.ts

@@ -0,0 +1,80 @@
+/**
+ * @fileoverview AdvisoryRepository — vulnerability advisory storage and retrieval
+ * @module @skillsmith/core/repositories/AdvisoryRepository
+ * @see SMI-skill-version-tracking Wave 3
+ *
+ * Provides CRUD operations for skill security advisories stored in
+ * the skill_advisories table (introduced in migration v6).
+ *
+ * Design notes:
+ *  - No FK on skill_id — soft reference, advisory history survives skill removal
+ *  - upsertAdvisory is idempotent via INSERT OR REPLACE
+ *  - "Active" advisories are those where withdrawn_at IS NULL
+ */
+import type { Database as DatabaseType } from '../db/database-interface.js';
+/**
+ * A skill security advisory record
+ */
+export interface SkillAdvisory {
+    /** SSA-YYYY-NNN format advisory identifier */
+    id: string;
+    /** Registry skill identifier (soft reference — no FK) */
+    skillId: string;
+    /** Advisory severity level */
+    severity: 'low' | 'medium' | 'high' | 'critical';
+    /** Short advisory title */
+    title: string;
+    /** Full advisory description */
+    description: string;
+    /** JSON array of affected version ranges */
+    affectedVersions?: string;
+    /** JSON array of patched version ranges */
+    patchedVersions?: string;
+    /** JSON array of CWE identifiers */
+    cweIds?: string;
+    /** JSON array of reference URLs */
+    advisoryRefs?: string;
+    /** ISO datetime when advisory was published */
+    publishedAt: string;
+    /** ISO datetime if advisory was retracted (undefined = still active) */
+    withdrawnAt?: string;
+    /** Row creation timestamp (set by DB default on insert) */
+    createdAt?: string;
+}
+/**
+ * Repository for reading and writing skill advisory records
+ */
+export declare class AdvisoryRepository {
+    private db;
+    constructor(db: DatabaseType);
+    private rowToAdvisory;
+    /**
+     * Insert or replace an advisory record.
+     *
+     * Idempotent: re-running with the same id replaces the existing row.
+     *
+     * @param advisory - Advisory data to persist
+     */
+    upsertAdvisory(advisory: SkillAdvisory): void;
+    /**
+     * Mark an advisory as withdrawn by setting withdrawn_at to the current time.
+     *
+     * @param id - Advisory identifier to withdraw
+     */
+    withdrawAdvisory(id: string): void;
+    /**
+     * Get all active (non-withdrawn) advisories for a specific skill.
+     *
+     * @param skillId - Registry skill identifier
+     * @returns Array of active SkillAdvisory records ordered by published_at DESC
+     */
+    getAdvisoriesForSkill(skillId: string): SkillAdvisory[];
+    /**
+     * Get all active advisories, optionally filtered by severity.
+     *
+     * @param severity - Optional severity filter; omit to return all active advisories
+     * @returns Array of active SkillAdvisory records ordered by published_at DESC
+     */
+    getActiveAdvisories(severity?: 'low' | 'medium' | 'high' | 'critical'): SkillAdvisory[];
+}
+//# sourceMappingURL=AdvisoryRepository.d.ts.map

package/dist/src/repositories/AdvisoryRepository.d.ts.map

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package/dist/src/repositories/AdvisoryRepository.js

@@ -0,0 +1,128 @@
+/**
+ * @fileoverview AdvisoryRepository — vulnerability advisory storage and retrieval
+ * @module @skillsmith/core/repositories/AdvisoryRepository
+ * @see SMI-skill-version-tracking Wave 3
+ *
+ * Provides CRUD operations for skill security advisories stored in
+ * the skill_advisories table (introduced in migration v6).
+ *
+ * Design notes:
+ *  - No FK on skill_id — soft reference, advisory history survives skill removal
+ *  - upsertAdvisory is idempotent via INSERT OR REPLACE
+ *  - "Active" advisories are those where withdrawn_at IS NULL
+ */
+// ============================================================================
+// Repository
+// ============================================================================
+/**
+ * Repository for reading and writing skill advisory records
+ */
+export class AdvisoryRepository {
+    db;
+    constructor(db) {
+        this.db = db;
+    }
+    // --------------------------------------------------------------------------
+    // Private helpers
+    // --------------------------------------------------------------------------
+    rowToAdvisory(row) {
+        return {
+            id: row.id,
+            skillId: row.skill_id,
+            severity: row.severity,
+            title: row.title,
+            description: row.description,
+            affectedVersions: row.affected_versions ?? undefined,
+            patchedVersions: row.patched_versions ?? undefined,
+            cweIds: row.cwe_ids ?? undefined,
+            advisoryRefs: row.advisory_refs ?? undefined,
+            publishedAt: row.published_at,
+            withdrawnAt: row.withdrawn_at ?? undefined,
+            createdAt: row.created_at,
+        };
+    }
+    // --------------------------------------------------------------------------
+    // Writes
+    // --------------------------------------------------------------------------
+    /**
+     * Insert or replace an advisory record.
+     *
+     * Idempotent: re-running with the same id replaces the existing row.
+     *
+     * @param advisory - Advisory data to persist
+     */
+    upsertAdvisory(advisory) {
+        this.db
+            .prepare(`INSERT OR REPLACE INTO skill_advisories
+           (id, skill_id, severity, title, description,
+            affected_versions, patched_versions, cwe_ids, advisory_refs,
+            published_at, withdrawn_at)
+         VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)`)
+            .run(advisory.id, advisory.skillId, advisory.severity, advisory.title, advisory.description, advisory.affectedVersions ?? null, advisory.patchedVersions ?? null, advisory.cweIds ?? null, advisory.advisoryRefs ?? null, advisory.publishedAt, advisory.withdrawnAt ?? null);
+    }
+    /**
+     * Mark an advisory as withdrawn by setting withdrawn_at to the current time.
+     *
+     * @param id - Advisory identifier to withdraw
+     */
+    withdrawAdvisory(id) {
+        this.db
+            .prepare(`UPDATE skill_advisories
+            SET withdrawn_at = datetime('now')
+          WHERE id = ?`)
+            .run(id);
+    }
+    // --------------------------------------------------------------------------
+    // Reads
+    // --------------------------------------------------------------------------
+    /**
+     * Get all active (non-withdrawn) advisories for a specific skill.
+     *
+     * @param skillId - Registry skill identifier
+     * @returns Array of active SkillAdvisory records ordered by published_at DESC
+     */
+    getAdvisoriesForSkill(skillId) {
+        const rows = this.db
+            .prepare(`SELECT id, skill_id, severity, title, description,
+                affected_versions, patched_versions, cwe_ids, advisory_refs,
+                published_at, withdrawn_at, created_at
+           FROM skill_advisories
+          WHERE skill_id = ?
+            AND withdrawn_at IS NULL
+          ORDER BY published_at DESC`)
+            .all(skillId);
+        return rows.map((r) => this.rowToAdvisory(r));
+    }
+    /**
+     * Get all active advisories, optionally filtered by severity.
+     *
+     * @param severity - Optional severity filter; omit to return all active advisories
+     * @returns Array of active SkillAdvisory records ordered by published_at DESC
+     */
+    getActiveAdvisories(severity) {
+        let rows;
+        if (severity) {
+            rows = this.db
+                .prepare(`SELECT id, skill_id, severity, title, description,
+                  affected_versions, patched_versions, cwe_ids, advisory_refs,
+                  published_at, withdrawn_at, created_at
+             FROM skill_advisories
+            WHERE withdrawn_at IS NULL
+              AND severity = ?
+            ORDER BY published_at DESC`)
+                .all(severity);
+        }
+        else {
+            rows = this.db
+                .prepare(`SELECT id, skill_id, severity, title, description,
+                  affected_versions, patched_versions, cwe_ids, advisory_refs,
+                  published_at, withdrawn_at, created_at
+             FROM skill_advisories
+            WHERE withdrawn_at IS NULL
+            ORDER BY published_at DESC`)
+                .all();
+        }
+        return rows.map((r) => this.rowToAdvisory(r));
+    }
+}
+//# sourceMappingURL=AdvisoryRepository.js.map

package/dist/src/repositories/AdvisoryRepository.js.map

@@ -0,0 +1 @@
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package/dist/src/repositories/AdvisoryRepository.test.d.ts

@@ -0,0 +1,6 @@
+/**
+ * @fileoverview Unit tests for AdvisoryRepository
+ * @see SMI-skill-version-tracking Wave 3
+ */
+export {};
+//# sourceMappingURL=AdvisoryRepository.test.d.ts.map

package/dist/src/repositories/AdvisoryRepository.test.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"AdvisoryRepository.test.d.ts","sourceRoot":"","sources":["../../../src/repositories/AdvisoryRepository.test.ts"],"names":[],"mappings":"AAAA;;;GAGG"}

package/dist/src/repositories/AdvisoryRepository.test.js

@@ -0,0 +1,149 @@
+/**
+ * @fileoverview Unit tests for AdvisoryRepository
+ * @see SMI-skill-version-tracking Wave 3
+ */
+import { describe, it, expect, beforeEach, afterEach } from 'vitest';
+import { createTestDatabase, closeDatabase } from '../../tests/helpers/database.js';
+import { AdvisoryRepository } from './AdvisoryRepository.js';
+// ============================================================================
+// Test helpers
+// ============================================================================
+function makeAdvisory(overrides = {}) {
+    return {
+        id: 'SSA-2026-001',
+        skillId: 'community/commit-helper',
+        severity: 'high',
+        title: 'Prompt injection in commit-helper',
+        description: 'Maliciously crafted commit messages can inject arbitrary prompts.',
+        publishedAt: '2026-01-15T00:00:00Z',
+        ...overrides,
+    };
+}
+// ============================================================================
+// Tests
+// ============================================================================
+describe('AdvisoryRepository', () => {
+    let db;
+    let repo;
+    beforeEach(() => {
+        db = createTestDatabase();
+        repo = new AdvisoryRepository(db);
+    });
+    afterEach(() => {
+        closeDatabase(db);
+    });
+    // --------------------------------------------------------------------------
+    // upsertAdvisory
+    // --------------------------------------------------------------------------
+    describe('upsertAdvisory', () => {
+        it('creates a new advisory record', () => {
+            const advisory = makeAdvisory();
+            repo.upsertAdvisory(advisory);
+            const results = repo.getAdvisoriesForSkill('community/commit-helper');
+            expect(results).toHaveLength(1);
+            expect(results[0].id).toBe('SSA-2026-001');
+            expect(results[0].severity).toBe('high');
+            expect(results[0].title).toBe('Prompt injection in commit-helper');
+        });
+        it('replaces an existing advisory on re-upsert (idempotent)', () => {
+            repo.upsertAdvisory(makeAdvisory({ title: 'Original title' }));
+            repo.upsertAdvisory(makeAdvisory({ title: 'Updated title' }));
+            const results = repo.getAdvisoriesForSkill('community/commit-helper');
+            expect(results).toHaveLength(1);
+            expect(results[0].title).toBe('Updated title');
+        });
+        it('stores optional JSON fields correctly', () => {
+            const advisory = makeAdvisory({
+                affectedVersions: '["<1.2.0"]',
+                patchedVersions: '[">=1.2.0"]',
+                cweIds: '["CWE-77"]',
+                advisoryRefs: '["https://example.com/advisory"]',
+            });
+            repo.upsertAdvisory(advisory);
+            const results = repo.getAdvisoriesForSkill('community/commit-helper');
+            expect(results[0].affectedVersions).toBe('["<1.2.0"]');
+            expect(results[0].patchedVersions).toBe('[">=1.2.0"]');
+            expect(results[0].cweIds).toBe('["CWE-77"]');
+            expect(results[0].advisoryRefs).toBe('["https://example.com/advisory"]');
+        });
+    });
+    // --------------------------------------------------------------------------
+    // getAdvisoriesForSkill
+    // --------------------------------------------------------------------------
+    describe('getAdvisoriesForSkill', () => {
+        it('returns only active (non-withdrawn) advisories for the given skill', () => {
+            repo.upsertAdvisory(makeAdvisory({ id: 'SSA-2026-001', skillId: 'community/commit-helper' }));
+            repo.upsertAdvisory(makeAdvisory({ id: 'SSA-2026-002', skillId: 'community/commit-helper' }));
+            repo.upsertAdvisory(makeAdvisory({ id: 'SSA-2026-003', skillId: 'community/other-skill' }));
+            // Withdraw SSA-2026-001
+            repo.withdrawAdvisory('SSA-2026-001');
+            const results = repo.getAdvisoriesForSkill('community/commit-helper');
+            expect(results).toHaveLength(1);
+            expect(results[0].id).toBe('SSA-2026-002');
+        });
+        it('returns empty array when skill has no advisories', () => {
+            const results = repo.getAdvisoriesForSkill('community/nonexistent');
+            expect(results).toHaveLength(0);
+        });
+        it('does not return advisories for other skills', () => {
+            repo.upsertAdvisory(makeAdvisory({ id: 'SSA-2026-004', skillId: 'community/other-skill' }));
+            const results = repo.getAdvisoriesForSkill('community/commit-helper');
+            expect(results).toHaveLength(0);
+        });
+    });
+    // --------------------------------------------------------------------------
+    // getActiveAdvisories
+    // --------------------------------------------------------------------------
+    describe('getActiveAdvisories', () => {
+        beforeEach(() => {
+            repo.upsertAdvisory(makeAdvisory({ id: 'SSA-2026-010', severity: 'critical', skillId: 'community/skill-a' }));
+            repo.upsertAdvisory(makeAdvisory({ id: 'SSA-2026-011', severity: 'high', skillId: 'community/skill-b' }));
+            repo.upsertAdvisory(makeAdvisory({ id: 'SSA-2026-012', severity: 'medium', skillId: 'community/skill-c' }));
+            repo.upsertAdvisory(makeAdvisory({ id: 'SSA-2026-013', severity: 'low', skillId: 'community/skill-d' }));
+            repo.upsertAdvisory(makeAdvisory({ id: 'SSA-2026-014', severity: 'high', skillId: 'community/skill-e' }));
+            // Withdraw one of the high advisories
+            repo.withdrawAdvisory('SSA-2026-014');
+        });
+        it('returns all active advisories when no severity filter', () => {
+            const results = repo.getActiveAdvisories();
+            // 4 active (SSA-2026-010 through SSA-2026-013), SSA-2026-014 is withdrawn
+            expect(results).toHaveLength(4);
+        });
+        it('filters by severity when provided', () => {
+            const highs = repo.getActiveAdvisories('high');
+            expect(highs).toHaveLength(1);
+            expect(highs[0].id).toBe('SSA-2026-011');
+        });
+        it('returns active advisories for the given severity', () => {
+            const results = repo.getActiveAdvisories('critical');
+            // SSA-2026-010 is still active
+            expect(results).toHaveLength(1);
+            expect(results[0].id).toBe('SSA-2026-010');
+        });
+        it('does not return withdrawn advisories in unfiltered results', () => {
+            const results = repo.getActiveAdvisories();
+            const ids = results.map((r) => r.id);
+            expect(ids).not.toContain('SSA-2026-014');
+        });
+    });
+    // --------------------------------------------------------------------------
+    // withdrawAdvisory
+    // --------------------------------------------------------------------------
+    describe('withdrawAdvisory', () => {
+        it('sets withdrawn_at on the advisory', () => {
+            repo.upsertAdvisory(makeAdvisory({ id: 'SSA-2026-020' }));
+            // Advisory should be active before withdrawal
+            const before = repo.getAdvisoriesForSkill('community/commit-helper');
+            expect(before).toHaveLength(1);
+            repo.withdrawAdvisory('SSA-2026-020');
+            // Advisory should no longer appear in active queries
+            const after = repo.getAdvisoriesForSkill('community/commit-helper');
+            expect(after).toHaveLength(0);
+        });
+        it('is a no-op for non-existent advisory id', () => {
+            // Should not throw
+            expect(() => repo.withdrawAdvisory('SSA-9999-999')).not.toThrow();
+        });
+    });
+});
+//# sourceMappingURL=AdvisoryRepository.test.js.map

package/dist/src/repositories/AdvisoryRepository.test.js.map

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package/dist/src/repositories/CoInstallRepository.d.ts

@@ -0,0 +1,68 @@
+/**
+ * @fileoverview CoInstallRepository — session-scoped co-install tracking
+ * @module @skillsmith/core/repositories/CoInstallRepository
+ * @see SMI-2761: Co-install recommendations
+ *
+ * Records pairs of skills installed together in the same session.
+ * Symmetric: installing (A, B) always creates both (A,B) and (B,A) rows.
+ * Surfacing threshold: install_count >= 5 before including in responses.
+ */
+import type { Database as DatabaseType } from '../db/database-interface.js';
+/** A skill summary returned in co-install recommendations */
+export interface CoInstallSummary {
+    /** Skill ID (e.g. "anthropic/commit") */
+    skillId: string;
+    /** Human-readable skill name */
+    name: string;
+    /** Short description */
+    description?: string;
+    /** Author slug */
+    author?: string;
+    /** Number of times installed together with the queried skill */
+    installCount: number;
+}
+/**
+ * Repository for reading and writing skill co-install records.
+ *
+ * Gracefully handles databases where the skill_co_installs table has not been
+ * created yet (returns empty results instead of throwing). This allows
+ * test contexts that use createDatabase() directly (without running all
+ * migrations) to work without errors.
+ */
+export declare class CoInstallRepository {
+    private db;
+    constructor(db: DatabaseType);
+    /**
+     * Record a co-install between two skills (both orderings).
+     *
+     * Uses INSERT OR REPLACE with incremented count so repeated co-installs
+     * accumulate. Both (A→B) and (B→A) are written for symmetric queries.
+     *
+     * @param skillIdA - First skill ID
+     * @param skillIdB - Second skill ID
+     */
+    recordCoInstall(skillIdA: string, skillIdB: string): void;
+    /**
+     * Record co-installs for all pairs in a set of skills installed together.
+     *
+     * For N skills, records N*(N-1) rows (each pair in both orderings).
+     * No-op when fewer than 2 skill IDs provided.
+     *
+     * @param skillIds - Array of skill IDs installed in the same session
+     */
+    recordSessionCoInstalls(skillIds: string[]): void;
+    /**
+     * Get the top skills co-installed with a given skill.
+     *
+     * Joins against the skills table to include name/description/author.
+     * Only returns skills with install_count >= minCount (default 5).
+     * Returns an empty array when the table does not exist or has no results.
+     *
+     * @param skillId - The skill to look up co-installs for
+     * @param limit - Maximum results to return (default 5)
+     * @param minCount - Minimum co-install count to include (default 5)
+     * @returns Array of co-installed skill summaries, ordered by count desc
+     */
+    getTopCoInstalls(skillId: string, limit?: number, minCount?: number): CoInstallSummary[];
+}
+//# sourceMappingURL=CoInstallRepository.d.ts.map

package/dist/src/repositories/CoInstallRepository.d.ts.map

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