@skillsmith/cli 0.6.3 → 0.6.5

package/dist/tests/e2e/audit-sources-roundtrip.test.js

@@ -0,0 +1,139 @@
+/**
+ * @fileoverview SMI-5407 end-to-end — GATE (write half): recover -> backfill.
+ *
+ * Drives the REAL CLI apply path (`audit sources --apply --yes --min-confidence
+ * medium`) into a REAL temp manifest and asserts the load-bearing backfill keys:
+ *   - a single registry-name match (medium) writes the registry UUID as `id`
+ *     (the only id form `skill_outdated` can resolve a registry skill by);
+ *   - a git remote (exact) writes an owner/skill-name `id` (no UUID — the git
+ *     tier has none);
+ *   - both write an https `source` that `buildRawUrl` accepts (View-Changes).
+ *
+ * The READ half — that real `skill_outdated` resolves the UUID id (and NOT the
+ * owner/skill-name, owner/repo, or URL decoy forms), while the git owner/skill-
+ * name id resolves to `unknown` yet keeps a working View-Changes source — lives
+ * in `packages/mcp-server/src/__tests__/skill-outdated-resolution.test.ts`.
+ * It cannot live here: importing the mcp-server `executeOutdated`/`ToolContext`
+ * source across the package boundary is structurally invalid under the CLI
+ * tsconfig rootDir (TS6059/TS6307), and those symbols are not part of the
+ * mcp-server package's public exports. The shared REG_UUID + manifest shape are
+ * the contract linking the two halves.
+ */
+import { describe, it, expect, beforeAll, afterAll, beforeEach } from 'vitest';
+import * as fs from 'node:fs';
+import * as os from 'node:os';
+import * as path from 'node:path';
+import { writeSourceFixture, seedSkillsDb, buildRawUrl, FIXTURE_DIRS, GIT_OWNER, GIT_REPO, } from './utils/source-recovery-fixture.js';
+let runAuditSources;
+let tempHome = '';
+let skillsRoot = '';
+let manifestPath = '';
+let originalHome;
+let dbCounter = 0;
+// git tier: owner/skill-name id (no registry UUID).
+const GIT_ID = `${GIT_OWNER}/${FIXTURE_DIRS.git}`;
+// git tier canonical recovered source (both git fixtures share owner/repo).
+const GIT_SOURCE = `https://github.com/${GIT_OWNER}/${GIT_REPO}`;
+// SMI-5411: registry UUID a catalog-known git repo enriches its manifest id to.
+const GIT_REG_UUID = 'b2c3d4e5-0000-4000-8000-000000000002';
+// registry tier: a single-name match carrying the UUID.
+const REG_UUID = 'a1b2c3d4-0000-4000-8000-000000000001';
+const REG_OWNER = 'regowner';
+const REG_REPO = 'regrepo';
+const REG_SOURCE = `https://github.com/${REG_OWNER}/${REG_REPO}`;
+function makeOpts(o) {
+    return {
+        skillsRoot,
+        apply: o.apply ?? false,
+        yes: o.yes ?? false,
+        set: o.set,
+        minConfidence: o.minConfidence ?? 'high',
+        json: o.json ?? false,
+        embedding: false,
+        catalogHint: false,
+        writeFrontmatter: false,
+        forceWriteFrontmatter: false,
+        db: o.db,
+    };
+}
+function entry(name) {
+    const manifest = JSON.parse(fs.readFileSync(manifestPath, 'utf-8'));
+    return manifest.installedSkills[name];
+}
+beforeAll(async () => {
+    originalHome = process.env['HOME'];
+    tempHome = fs.mkdtempSync(path.join(os.tmpdir(), 'smi5407-rt-home-'));
+    process.env['HOME'] = tempHome;
+    skillsRoot = fs.mkdtempSync(path.join(os.tmpdir(), 'smi5407-rt-skills-'));
+    manifestPath = path.join(tempHome, '.skillsmith', 'manifest.json');
+    writeSourceFixture(skillsRoot);
+    ({ runAuditSources } = await import('../../src/commands/audit-sources.action.js'));
+});
+afterAll(() => {
+    if (originalHome === undefined)
+        delete process.env['HOME'];
+    else
+        process.env['HOME'] = originalHome;
+    for (const dir of [tempHome, skillsRoot]) {
+        if (dir)
+            fs.rmSync(dir, { recursive: true, force: true });
+    }
+});
+beforeEach(() => {
+    fs.rmSync(manifestPath, { force: true });
+});
+describe('SMI-5407 e2e GATE (write) — recover -> backfill (scenario 2)', () => {
+    it('writes the registry UUID id (medium) and the git owner/skill-name id (exact)', async () => {
+        const db = path.join(tempHome, `rt-${dbCounter++}.db`);
+        await seedSkillsDb(db, [{ id: REG_UUID, name: FIXTURE_DIRS.registry, repoUrl: REG_SOURCE }]);
+        // --min-confidence medium so the single registry-name match qualifies
+        // (fixed qualifies(): the minConfidence floor IS the gate, no AUTO_QUALIFY).
+        await runAuditSources(makeOpts({ db, apply: true, yes: true, minConfidence: 'medium' }));
+        // registry: the load-bearing UUID id + https owner/repo source.
+        const registry = entry(FIXTURE_DIRS.registry);
+        expect(registry.id).toBe(REG_UUID);
+        expect(registry.source).toBe(REG_SOURCE);
+        expect(buildRawUrl(registry.source)).toBe(`https://raw.githubusercontent.com/${REG_OWNER}/${REG_REPO}/main/SKILL.md`);
+        // git: exact, owner/skill-name id, buildRawUrl-parseable source.
+        const git = entry(FIXTURE_DIRS.git);
+        expect(git.id).toBe(GIT_ID);
+        expect(git.source).toBe(`https://github.com/${GIT_OWNER}/${GIT_REPO}`);
+        expect(buildRawUrl(git.source)).not.toBeNull();
+    });
+    it('default min-confidence (high) leaves the medium registry match unwritten', async () => {
+        const db = path.join(tempHome, `rt-${dbCounter++}.db`);
+        await seedSkillsDb(db, [{ id: REG_UUID, name: FIXTURE_DIRS.registry, repoUrl: REG_SOURCE }]);
+        await runAuditSources(makeOpts({ db, apply: true, yes: true }));
+        expect(entry(FIXTURE_DIRS.registry)).toBeUndefined();
+        expect(entry(FIXTURE_DIRS.git)).toBeDefined();
+    });
+    // SMI-5411: when the git skill's recovered repo_url IS in the local catalog,
+    // `audit sources --apply` enriches its manifest id from owner/skill-name to the
+    // registry UUID (so skill_outdated can resolve it) WITHOUT changing the exact
+    // git SOURCE (View-Changes unchanged). The READ half — that real
+    // skill_outdated resolves this UUID id and rejects decoy forms — lives in
+    // packages/mcp-server/src/__tests__/skill-outdated-resolution.test.ts.
+    it('enriches a catalog-known git skill id to the registry UUID at default confidence', async () => {
+        const db = path.join(tempHome, `rt-${dbCounter++}.db`);
+        // Seed a catalog row whose repo_url matches the git fixture's recovered
+        // source. `name` is distinct from the git fixture dir so the name-match tier
+        // is never reached — the git tier short-circuits and only the id is enriched.
+        await seedSkillsDb(db, [{ id: GIT_REG_UUID, name: GIT_REPO, repoUrl: GIT_SOURCE }]);
+        await runAuditSources(makeOpts({ db, apply: true, yes: true }));
+        const git = entry(FIXTURE_DIRS.git);
+        expect(git.id).toBe(GIT_REG_UUID); // enriched UUID, not owner/skill-name
+        expect(git.id).not.toBe(GIT_ID); // the un-enriched decoy form must not win
+        expect(git.source).toBe(GIT_SOURCE); // exact git source unchanged
+        expect(buildRawUrl(git.source)).toBe(`https://raw.githubusercontent.com/${GIT_OWNER}/${GIT_REPO}/main/SKILL.md`);
+    });
+    it('leaves the git id as owner/skill-name when the repo is NOT catalog-known (graceful)', async () => {
+        const db = path.join(tempHome, `rt-${dbCounter++}.db`);
+        // No skills row for the git repo_url -> findRegistryIdByRepoUrl returns null.
+        await seedSkillsDb(db, [{ id: REG_UUID, name: FIXTURE_DIRS.registry, repoUrl: REG_SOURCE }]);
+        await runAuditSources(makeOpts({ db, apply: true, yes: true }));
+        const git = entry(FIXTURE_DIRS.git);
+        expect(git.id).toBe(GIT_ID); // unchanged fallback
+        expect(git.source).toBe(GIT_SOURCE);
+    });
+});
+//# sourceMappingURL=audit-sources-roundtrip.test.js.map

package/dist/tests/e2e/audit-sources-roundtrip.test.js.map

@@ -0,0 +1 @@
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package/dist/tests/e2e/utils/source-recovery-fixture.d.ts

@@ -0,0 +1,49 @@
+/**
+ * @fileoverview Shared real-filesystem fixture for the SMI-5407 source-recovery
+ * end-to-end / integration suite.
+ * @see SMI-5407
+ *
+ * NOT a `*.test.ts` file, so vitest never executes it as a test. It only
+ * touches `fs` / `path` and the `@skillsmith/core` DB factory; it computes no
+ * homedir-derived state, so it is safe to import statically (the homedir-frozen
+ * manifest modules are imported dynamically by the test files themselves).
+ */
+/** A minimal but parser-valid SKILL.md body. `extra` lands inside frontmatter. */
+export declare function skillMd(name: string, extra?: string): string;
+/** Directory basenames produced by {@link writeSourceFixture}. */
+export declare const FIXTURE_DIRS: {
+    readonly git: "git-skill";
+    readonly https: "https-skill";
+    readonly plugin: "plugin-skill";
+    readonly registry: "registry-skill";
+    readonly collision: "collision-skill";
+    readonly backup: "something.backup-20260101-120000";
+    readonly unknown: "unknown-skill";
+};
+/** Canonical GitHub owner/repo carried by both git fixtures (ssh + https). */
+export declare const GIT_OWNER = "wrsmith108";
+export declare const GIT_REPO = "linear-claude-skill";
+/**
+ * Materialize the canonical fixture tree under `root`. Returns the absolute
+ * directory paths keyed by {@link FIXTURE_DIRS} key.
+ */
+export declare function writeSourceFixture(root: string): Record<keyof typeof FIXTURE_DIRS, string>;
+/** A skills-row seed spec for the CLI candidate-lookup database. */
+export interface SkillSeedRow {
+    id: string;
+    name: string;
+    repoUrl: string;
+    qualityScore?: number;
+}
+/**
+ * Create a file-backed skills DB at `dbPath` and insert `rows` into `skills`.
+ * Opened and closed synchronously so the CLI can re-open the same file.
+ */
+export declare function seedSkillsDb(dbPath: string, rows: SkillSeedRow[]): Promise<void>;
+/**
+ * Replica of `diff.ts:buildRawUrl` (SMI-5406) — used to assert a backfilled
+ * `source` is in the exact form View-Changes accepts. Kept byte-identical to
+ * the production regex so the assertion stays load-bearing.
+ */
+export declare function buildRawUrl(source: string): string | null;
+//# sourceMappingURL=source-recovery-fixture.d.ts.map

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package/dist/tests/e2e/utils/source-recovery-fixture.js

@@ -0,0 +1,106 @@
+/**
+ * @fileoverview Shared real-filesystem fixture for the SMI-5407 source-recovery
+ * end-to-end / integration suite.
+ * @see SMI-5407
+ *
+ * NOT a `*.test.ts` file, so vitest never executes it as a test. It only
+ * touches `fs` / `path` and the `@skillsmith/core` DB factory; it computes no
+ * homedir-derived state, so it is safe to import statically (the homedir-frozen
+ * manifest modules are imported dynamically by the test files themselves).
+ */
+import * as fs from 'node:fs';
+import * as path from 'node:path';
+import { createDatabaseAsync, initializeSchema } from '@skillsmith/core';
+/** A minimal but parser-valid SKILL.md body. `extra` lands inside frontmatter. */
+export function skillMd(name, extra) {
+    const extraLine = extra ? `\n${extra}` : '';
+    return (`---\n` +
+        `name: ${name}\n` +
+        `description: ${name} fixture for source recovery\n` +
+        `author: fixtureowner${extraLine}\n` +
+        `---\n\n` +
+        `# ${name}\n\n` +
+        `Body content for ${name}.\n`);
+}
+function writeSkillDir(root, name, body) {
+    const dir = path.join(root, name);
+    fs.mkdirSync(dir, { recursive: true });
+    fs.writeFileSync(path.join(dir, 'SKILL.md'), body);
+    return dir;
+}
+function writeGitConfig(dir, originUrl) {
+    const config = `[core]\n\trepositoryformatversion = 0\n` +
+        `[remote "origin"]\n\turl = ${originUrl}\n\tfetch = +refs/heads/*:refs/remotes/origin/*\n`;
+    fs.mkdirSync(path.join(dir, '.git'), { recursive: true });
+    fs.writeFileSync(path.join(dir, '.git', 'config'), config);
+}
+/** Directory basenames produced by {@link writeSourceFixture}. */
+export const FIXTURE_DIRS = {
+    git: 'git-skill',
+    https: 'https-skill',
+    plugin: 'plugin-skill',
+    registry: 'registry-skill',
+    collision: 'collision-skill',
+    backup: 'something.backup-20260101-120000',
+    unknown: 'unknown-skill',
+};
+/** Canonical GitHub owner/repo carried by both git fixtures (ssh + https). */
+export const GIT_OWNER = 'wrsmith108';
+export const GIT_REPO = 'linear-claude-skill';
+/**
+ * Materialize the canonical fixture tree under `root`. Returns the absolute
+ * directory paths keyed by {@link FIXTURE_DIRS} key.
+ */
+export function writeSourceFixture(root) {
+    fs.mkdirSync(root, { recursive: true });
+    // (a) git remote — scp/ssh form.
+    const git = writeSkillDir(root, FIXTURE_DIRS.git, skillMd(FIXTURE_DIRS.git));
+    writeGitConfig(git, `git@github.com:${GIT_OWNER}/${GIT_REPO}.git`);
+    // git remote — https form (same owner/repo as the ssh fixture).
+    const https = writeSkillDir(root, FIXTURE_DIRS.https, skillMd(FIXTURE_DIRS.https));
+    writeGitConfig(https, `https://github.com/${GIT_OWNER}/${GIT_REPO}.git`);
+    // (b) plugin manifest.
+    const plugin = writeSkillDir(root, FIXTURE_DIRS.plugin, skillMd(FIXTURE_DIRS.plugin));
+    fs.mkdirSync(path.join(plugin, '.claude-plugin'), { recursive: true });
+    fs.writeFileSync(path.join(plugin, '.claude-plugin', 'plugin.json'), JSON.stringify({ repository: 'https://github.com/o/r' }, null, 2));
+    // (c) registry single-name match; (d) collision two-name match.
+    const registry = writeSkillDir(root, FIXTURE_DIRS.registry, skillMd(FIXTURE_DIRS.registry));
+    const collision = writeSkillDir(root, FIXTURE_DIRS.collision, skillMd(FIXTURE_DIRS.collision));
+    // (e) backup snapshot dir — listed, never scanned.
+    const backup = writeSkillDir(root, FIXTURE_DIRS.backup, skillMd('something'));
+    // (f) no .git, no plugin, no registry row.
+    const unknown = writeSkillDir(root, FIXTURE_DIRS.unknown, skillMd(FIXTURE_DIRS.unknown));
+    return { git, https, plugin, registry, collision, backup, unknown };
+}
+/**
+ * Create a file-backed skills DB at `dbPath` and insert `rows` into `skills`.
+ * Opened and closed synchronously so the CLI can re-open the same file.
+ */
+export async function seedSkillsDb(dbPath, rows) {
+    const db = await createDatabaseAsync(dbPath);
+    try {
+        initializeSchema(db);
+        const insert = db.prepare('INSERT INTO skills (id, name, repo_url, quality_score) VALUES (?, ?, ?, ?)');
+        for (const row of rows) {
+            insert.run(row.id, row.name, row.repoUrl, row.qualityScore ?? 0.5);
+        }
+    }
+    finally {
+        db.close();
+    }
+}
+/**
+ * Replica of `diff.ts:buildRawUrl` (SMI-5406) — used to assert a backfilled
+ * `source` is in the exact form View-Changes accepts. Kept byte-identical to
+ * the production regex so the assertion stays load-bearing.
+ */
+export function buildRawUrl(source) {
+    if (source.startsWith('https://raw.githubusercontent.com/'))
+        return source;
+    const m = /^https:\/\/github\.com\/([^/]+)\/([^/]+)(?:\/tree\/([^/]+))?/.exec(source);
+    if (!m)
+        return null;
+    const [, owner, repo, ref = 'main'] = m;
+    return `https://raw.githubusercontent.com/${owner}/${repo}/${ref}/SKILL.md`;
+}
+//# sourceMappingURL=source-recovery-fixture.js.map

package/dist/tests/e2e/utils/source-recovery-fixture.js.map

@@ -0,0 +1 @@
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package/dist/tests/init.test.js

@@ -306,7 +306,8 @@ describe('SMI-4314: createInitCommand wrapper maps errors to exit codes', () =>
         await rm(tmpRoot, { recursive: true, force: true });
     });
     it('InitSkillError → prints err.message exactly once and exits with err.exitCode', async () => {
-        const { createInitCommand } = await import('../src/commands/author/init.js');
+        // SMI-5129: createInitCommand moved to init.action.ts (sibling-split).
+        const { createInitCommand } = await import('../src/commands/author/init.action.js');
         const cmd = createInitCommand();
         // commander treats process.exit inside .action as a real exit; our stub
         // throws a marker so parseAsync rejects.

package/dist/tests/init.test.js.map

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package/dist/tests/install-quarantine.test.d.ts

@@ -0,0 +1,10 @@
+/**
+ * SMI-5358 GAP-07: createDbRegistryLookup quarantine enforcement
+ *
+ * Verifies that createDbRegistryLookup consults the QuarantineRepository
+ * so quarantined skills surface quarantined===true in the lookup result —
+ * allowing SkillInstallationService to block the install. A regression to
+ * hardcoded quarantined:false must fail assertion (1).
+ */
+export {};
+//# sourceMappingURL=install-quarantine.test.d.ts.map

package/dist/tests/install-quarantine.test.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"install-quarantine.test.d.ts","sourceRoot":"","sources":["../../tests/install-quarantine.test.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG"}

package/dist/tests/install-quarantine.test.js

@@ -0,0 +1,86 @@
+/**
+ * SMI-5358 GAP-07: createDbRegistryLookup quarantine enforcement
+ *
+ * Verifies that createDbRegistryLookup consults the QuarantineRepository
+ * so quarantined skills surface quarantined===true in the lookup result —
+ * allowing SkillInstallationService to block the install. A regression to
+ * hardcoded quarantined:false must fail assertion (1).
+ */
+import { describe, it, expect, afterEach } from 'vitest';
+import { SkillRepository, QuarantineRepository, closeDatabase, } from '@skillsmith/core';
+import { openCliDatabase } from '../src/utils/open-database.js';
+import { createDbRegistryLookup } from '../src/commands/install.js';
+describe('SMI-5358 GAP-07: createDbRegistryLookup quarantine enforcement', () => {
+    const opened = [];
+    afterEach(() => {
+        for (const db of opened)
+            closeDatabase(db);
+        opened.length = 0;
+    });
+    async function open() {
+        const db = await openCliDatabase(':memory:');
+        opened.push(db);
+        return db;
+    }
+    it('(1) quarantined skill resolves with quarantined===true', async () => {
+        const db = await open();
+        const skillRepo = new SkillRepository(db);
+        // Insert a skill with a known registry-format ID and a repoUrl so the lookup
+        // does not bail out at the "no repoUrl" guard.
+        skillRepo.create({
+            id: 'test-author/quarantined-skill',
+            name: 'Quarantined Skill',
+            repoUrl: 'https://github.com/test-author/quarantined-skill',
+        });
+        // Quarantine the skill via the same DB so isQuarantined() returns true.
+        const quarantineRepo = new QuarantineRepository(db);
+        quarantineRepo.create({
+            skillId: 'test-author/quarantined-skill',
+            source: 'github',
+            quarantineReason: 'Obfuscated code detected',
+            severity: 'SUSPICIOUS',
+        });
+        const lookup = createDbRegistryLookup(skillRepo, db);
+        const result = await lookup.lookup('test-author/quarantined-skill');
+        // Regression-catch: reverting createDbRegistryLookup to hardcoded false
+        // would make this assertion fail.
+        expect(result).not.toBeNull();
+        expect(result.quarantined).toBe(true);
+    });
+    it('(2) clean (non-quarantined) skill resolves with quarantined===false', async () => {
+        const db = await open();
+        const skillRepo = new SkillRepository(db);
+        skillRepo.create({
+            id: 'test-author/clean-skill',
+            name: 'Clean Skill',
+            repoUrl: 'https://github.com/test-author/clean-skill',
+        });
+        // No quarantine entry for this skill — QuarantineRepository table is
+        // created by the constructor but contains no rows for this ID.
+        const lookup = createDbRegistryLookup(skillRepo, db);
+        const result = await lookup.lookup('test-author/clean-skill');
+        expect(result).not.toBeNull();
+        expect(result.quarantined).toBe(false);
+    });
+    it('(3) skill with no repoUrl resolves to null', async () => {
+        const db = await open();
+        const skillRepo = new SkillRepository(db);
+        // Insert a skill WITHOUT a repoUrl (metadata-only seed data pattern).
+        skillRepo.create({
+            id: 'test-author/no-repo-skill',
+            name: 'No Repo Skill',
+            // repoUrl intentionally omitted
+        });
+        const lookup = createDbRegistryLookup(skillRepo, db);
+        const result = await lookup.lookup('test-author/no-repo-skill');
+        expect(result).toBeNull();
+    });
+    it('unknown skill ID resolves to null', async () => {
+        const db = await open();
+        const skillRepo = new SkillRepository(db);
+        const lookup = createDbRegistryLookup(skillRepo, db);
+        const result = await lookup.lookup('nobody/does-not-exist');
+        expect(result).toBeNull();
+    });
+});
+//# sourceMappingURL=install-quarantine.test.js.map

package/dist/tests/install-quarantine.test.js.map

@@ -0,0 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@skillsmith/cli",
-  "version": "0.6.3",
+  "version": "0.6.5",
   "description": "CLI tools for Skillsmith skill discovery and authentication",
   "type": "module",
   "bin": {
@@ -17,13 +17,12 @@
   },
   "dependencies": {
     "@inquirer/prompts": "7.10.1",
-    "@skillsmith/core": "^0.8.0",
-    "@skillsmith/mcp-server": "^0.5.3",
+    "@skillsmith/core": "^0.8.2",
+    "@skillsmith/mcp-server": "^0.5.5",
     "chalk": "5.6.2",
     "chokidar": "4.0.3",
     "cli-table3": "0.6.5",
     "commander": "14.0.3",
-    "esbuild": "0.27.2",
     "gray-matter": "4.0.3",
     "open": "11.0.0",
     "ora": "9.3.0"
@@ -32,7 +31,7 @@
     "@isaacs/keytar": "7.9.0"
   },
   "devDependencies": {
-    "@types/node": "^25.9.0",
+    "@types/node": "^25.9.3",
     "vitest": "4.1.6"
   },
   "peerDependencies": {