@skaile/workspaces 6.6.0 → 6.8.0

package/dist/{chunk-5ETYBC2X.js.map → chunk-YGP6XEPA.js.map}

@@ -1 +1 @@
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* runFlow / resumeFlow — CLI entry helpers for the flow connector.\n *\n * Moved from `runner/src/runner.ts` to `factory-assets/connectors/flow/run-flow.ts`\n * in Phase 3 of the flow-connector extraction (2026-05-08). Behaviour is\n * byte-identical to the previous runner-side implementation; only the log\n * source changes from `runner:flow:<runId>` to `flow-connector:run:<runId>`.\n *\n * The runner re-exports these symbols with a deprecation warning for one\n * release. CLI consumers should switch to\n * `import { runFlow, resumeFlow } from \"@skaile/workspaces/factory-assets/connectors/flow/run-flow\"`.\n *\n * Internal runner helpers (FlowOrchestrator, bootstrapRunnerLogStore,\n * createAgentSession, resolveHarnessPaths, session helpers) are loaded lazily\n * via dynamic `await import(\"@skaile/workspaces/runner\")` inside\n * `loadRunnerModule()` below. The lazy load avoids a static package-level\n * cycle (runner → connectors → factory-assets → runner) — the cycle exists at\n * the workspace level but never resolves at module-load time because\n * factory-assets only ever calls `import` from inside an async function body.\n * The string-literal specifier preserves `bun --compile` and tsup static\n * analysis.\n */\n\nimport fs from \"node:fs\";\nimport path from \"node:path\";\nimport type { AgentEvent } from \"@skaile/workspaces/bridge\";\nimport {\n  DEFAULT_HARNESS_ID,\n  findKindDirs,\n  isValidAssetName,\n  resolveAgentDir,\n  resolveSettings,\n  resolveSkWorkspaceConfig,\n} from \"@skaile/workspaces/core\";\nimport { createLogger } from \"@skaile/workspaces/core/logging\";\nimport { parseSkillFrontmatter, validateFlowVersions } from \"@skaile/workspaces/resolver\";\nimport { initTelemetry } from \"@skaile/workspaces/telemetry\";\nimport type { FlowExecution, FlowPromptEvent } from \"@skaile/workspaces/types\";\nimport * as z from \"zod\";\nimport { FlowAdapter } from \"./adapter.js\";\nimport {\n  findFlowFileInRoots,\n  FLOW_FILE_EXTENSIONS,\n  type FlowLookupMiss,\n  flowLookupRoots,\n  loadFlow,\n} from \"./engine/index.js\";\nimport { flowSkillVersionPins } from \"./engine/node-shape.js\";\nimport { SessionInlineSubFlowRunner } from \"./inline-sub-flow-host.js\";\nimport { SessionNodeExecutor } from \"./node-executor.js\";\nimport { driveOrchestratorTurn } from \"./orchestrator-turn.js\";\nimport { renderStimulusPrompt, type TurnStimulus } from \"./prompt-fragments.js\";\nimport { SessionSubpromptRunner } from \"./subprompt-runner.js\";\n\n/**\n * Lazy `import(\"@skaile/workspaces/runner\")` accessor. Cached on first call so\n * subsequent `runFlow` invocations don't re-evaluate the runner module.\n *\n * Dynamic ESM import is used (not `require`) so vitest and other ESM\n * bundlers honour their alias resolution — `require` would side-step the\n * configured aliases and pick up two distinct module instances when run\n * under vitest. The string-literal specifier ensures bun --compile keeps\n * the dependency (per the static-import-or-die rule in\n * connectors/CLAUDE.md).\n */\n// eslint-disable-next-line @typescript-eslint/no-explicit-any\nlet _runnerModule: any | undefined;\n// eslint-disable-next-line @typescript-eslint/no-explicit-any\nasync function loadRunnerModule(): Promise<any> {\n  if (_runnerModule) return _runnerModule;\n  _runnerModule = await import(\"@skaile/workspaces/runner\");\n  return _runnerModule;\n}\n\n/** Type-only re-export of SessionState so the runner tombstone shim still works. */\nexport type SessionState = import(\"@skaile/workspaces/runner\").SessionState;\n\n/** Maximum agent session duration (4 hours). Configurable via {@link RunOptions.sessionTimeoutMs}. */\nconst DEFAULT_SESSION_TIMEOUT_MS = 4 * 60 * 60 * 1000; // 4 hours\n\nconst FLOW_AGENT_OPERATION_NAMES = new Set([\n  \"get_available\",\n  \"get_state\",\n  \"get_globals\",\n  \"build_handoff\",\n  \"validate_node\",\n  \"start_node\",\n  \"request_approval\",\n  \"request_input\",\n  \"complete_node\",\n  \"skip_node\",\n  \"fail_node\",\n]);\n\n/**\n * Options for {@link runFlow}.\n *\n * Wraps `FlowOrchestrator` with autonomous mode turned on by default. First-class\n * gate nodes remain mandatory human decisions in every mode.\n *\n * @docLink packages/factory-assets/flow#run-flow\n */\nexport interface RunOptions {\n  /** The working directory for the project being orchestrated. */\n  projectDir: string;\n  /** Absolute path to the `.flow.yaml` or `.flow.json` definition file. */\n  flowPath: string;\n  /**\n   * Directory containing `agent.yaml`, `SOUL.md`, `RULES.md`, `knowledge/`.\n   * Resolved from `skaile.yaml` via `resolveAgentDir` when absent.\n   */\n  agentDir?: string;\n  /**\n   * Agent harness. Defaults to `settings.harness` (`\"omp\"` or `\"claude-sdk\"`).\n   */\n  harness?: string;\n  /**\n   */\n  /**\n   * Model name override. Falls back to `settings.model` when absent.\n   */\n  model?: string;\n  /**\n   * Path to a specific `settings.json` to load instead of the default\n   * layered resolution chain (project → parent → global → built-in defaults).\n   */\n  settingsFile?: string;\n  /**\n   * When `true`, prints the initial flow state without starting the agent\n   * and returns immediately.\n   */\n  dryRun?: boolean;\n  /**\n   * Per-session timeout in milliseconds. Defaults to\n   * {@link DEFAULT_SESSION_TIMEOUT_MS} (4 hours).\n   */\n  sessionTimeoutMs?: number;\n  /** Optional human-readable label shown in the session list. */\n  sessionLabel?: string;\n  /**\n   * The session `skaile resume` continues. Its run id is kept and its harness thread resumed,\n   * instead of starting a second session. Set by {@link resumeFlow}; not for other callers.\n   */\n  resumeSession?: SessionState;\n  /** Autonomous mode for CLI runs. Defaults to true; first-class gate nodes are never bypassed. */\n  autonomousMode?: boolean;\n  /**\n   * Called for each {@link AgentEvent} emitted during the run\n   * (e.g. `text`, `tool_call`, `state_changed`).\n   */\n  onEvent?: (event: AgentEvent) => void;\n  /**\n   * Called for each diagnostic log line. Defaults to `process.stdout`.\n   */\n  onLog?: (line: string) => void;\n}\n\n/**\n * Options for resuming an existing CLI session.\n *\n * Reconnects the harness's conversation thread (conversation history is\n * preserved via the stored `harnessSessionId`) but restarts flow execution\n * from scratch — flow state is not persisted in CLI mode. For governed,\n * resumable flow runs use a host that persists flow state (e.g. the Skaile\n * platform).\n *\n * @docLink packages/factory-assets/flow#resume-flow\n */\nexport interface ResumeOptions {\n  /** The working directory for the project being orchestrated. */\n  projectDir: string;\n  /**\n   * Specific run ID to resume. When absent, the current session pointer\n   * at `<projectDir>/.skaile/current` is used.\n   */\n  sessionId?: string;\n  /**\n   * Agent definition directory override. Defaults to the directory stored\n   * in the session file.\n   */\n  agentDir?: string;\n  /**\n   * When `true`, prints the initial flow state without starting the agent\n   * and returns immediately.\n   */\n  dryRun?: boolean;\n  /**\n   * Per-session timeout in milliseconds. Defaults to\n   * {@link DEFAULT_SESSION_TIMEOUT_MS} (4 hours).\n   */\n  sessionTimeoutMs?: number;\n  /**\n   * Called for each {@link AgentEvent} emitted during the run.\n   */\n  onEvent?: RunOptions[\"onEvent\"];\n  /**\n   * Called for each diagnostic log line. Defaults to `process.stdout`.\n   */\n  onLog?: RunOptions[\"onLog\"];\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Start a new flow session from the CLI.\n *\n * Wraps `FlowOrchestrator` with autonomous mode turned on by default. The\n * runner remains idle between turns; first-class gates always park for a human\n * decision, including in autonomous mode. Non-CLI hosts (Skaile platform,\n * Pichi) use the orchestrator directly via the serve command surface and drive\n * gates through user actions.\n *\n * @docLink packages/factory-assets/flow#run-flow\n */\nexport async function runFlow(opts: RunOptions): Promise<void> {\n  const runner = await loadRunnerModule();\n  const {\n    bootstrapRunnerLogStore,\n    bootstrapCapabilityRegistry,\n    CapabilityRegistry,\n    createAgentSession,\n    createSessionStimulusBus,\n    defineCapability,\n    registerCompositionCapabilities,\n    resolveHarnessPaths,\n    newSession,\n    saveSession,\n    touchSession,\n  } = runner;\n\n  const flow = loadFlow(opts.flowPath);\n  const agentDir = opts.agentDir ?? resolveAgentDir(opts.projectDir);\n  const settings = await resolveSettings(opts.projectDir, {\n    harness: opts.harness,\n    model: opts.model,\n  });\n\n  // `skaile resume` continues the session it was given: same run id, so the harness thread\n  // (`harnessSessionId`) resumes and `session list` shows one run, not a second one (p850).\n  const session = opts.resumeSession\n    ? (({ error: _prior, ...kept }) => touchSession({ ...kept, status: \"running\" }))(\n        opts.resumeSession,\n      )\n    : newSession({\n        flowId: flow.id,\n        projectDir: opts.projectDir,\n        agentDir,\n        harness: settings.harness ?? DEFAULT_HARNESS_ID,\n        model: settings.model,\n        label: opts.sessionLabel,\n      });\n\n  // A dry run only prints the plan: it must not leave a `running` session behind.\n  if (!opts.dryRun) await saveSession(opts.projectDir, session);\n\n  // Bootstrap structured logging — registers a process-singleton LogStore.\n  // OnLogBridgeSink mirrors entries to opts.onLog when caller provides one,\n  // preserving back-compat with CLI hosts that consume plain text lines.\n  const wsConfigEarly = resolveSkWorkspaceConfig(opts.projectDir);\n  const { dispose: disposeLogStore } = bootstrapRunnerLogStore({\n    sessionId: session.runId,\n    projectDir: opts.projectDir,\n    yamlBlock: wsConfigEarly.logging,\n    onLog: opts.onLog,\n    // A host that takes lines through `onLog` prints them itself; the stdout\n    // sink would add every record again as a raw JSON line.\n    stdout: opts.onLog === undefined,\n  });\n  const flowLog = createLogger({\n    kind: \"flow-connector\",\n    subkind: \"run\",\n    instance: session.runId,\n  });\n  const log = (line: string) => flowLog.info(line);\n  const capabilityRegistry = new CapabilityRegistry();\n  bootstrapCapabilityRegistry(capabilityRegistry);\n  const capabilityHooks = {\n    sessionId: session.runId,\n    composeTools: () => capabilityRegistry.composeLLMTools(),\n    resolve: (name: string) =>\n      capabilityRegistry.list().find((cap: { name: string }) => cap.name === name) ?? null,\n    invoke: (name: string, input: unknown, _signal?: AbortSignal, callId?: string) =>\n      capabilityRegistry.invoke(name, input, { sessionId: session.runId, callId }),\n  };\n\n  try {\n    // ── Dry run ────────────────────────────────────────────────────────────\n    if (opts.dryRun) {\n      const adapter = new FlowAdapter();\n      const handle = await adapter.connect(\n        {\n          id: \"flow\",\n          driver: \"flow\",\n          access: \"read-only\" as const,\n          options: { flow, seed: { runId: session.runId, startedBy: \"cli\" } },\n        },\n        {}, // flow needs no connect context\n      );\n      const state = adapter.getExecution(handle);\n      const available = Object.values(state.nodes)\n        .filter((n) => n.status === \"available\")\n        .map((n) => n.id);\n      // The plan is the command's output, not a log event: print it as plain lines\n      // (no `[info] [flow-connector:run:…]` prefix from the log formatter).\n      const printPlan = opts.onLog ?? ((line: string) => console.log(line));\n      printPlan(`[dry-run] Flow: ${flow.name} (${flow.id})`);\n      printPlan(`[dry-run] Available: ${available.join(\", \") || \"(none)\"}`);\n      await adapter.disconnect(handle);\n      return;\n    }\n\n    await validatePinnedVersions(flow, opts.projectDir, log);\n\n    // ── Telemetry initialization ────────────────────────────────────────────\n    const wsConfig = wsConfigEarly;\n    const telemetry = await initTelemetry(wsConfig.telemetry);\n    const flowTrace = telemetry.startTrace({\n      name: `flow:${flow.id}`,\n      kind: \"flow_run\",\n      attributes: {\n        \"skaile.flow.id\": flow.id,\n        \"skaile.flow.run_id\": session.runId,\n      },\n    });\n\n    // ── Agent session setup ─────────────────────────────────────────────────\n    const harnessPaths = resolveHarnessPaths(settings);\n    const agentSession = await createAgentSession({\n      projectDir: opts.projectDir,\n      agentDir: session.agentDir,\n      harness: session.harness,\n      model: session.model,\n      resumeSessionId: session.harnessSessionId,\n      projectClaudeMd: path.join(opts.projectDir, \"CLAUDE.md\"),\n      promptsDir: path.join(opts.projectDir, harnessPaths.promptsDir),\n      sessionId: session.runId,\n      onLog: log,\n      telemetry,\n      trace: flowTrace,\n      wsConfig,\n      capabilities: capabilityHooks,\n      capabilityRegistry,\n      // A flow step has no one to answer an approval card: with `permission_mode: interactive`\n      // a tool call that needs approval is refused instead of hanging the step.\n      unattended: true,\n    });\n    if (agentSession.composition?.discoverableEntries.length) {\n      registerCompositionCapabilities(\n        capabilityRegistry,\n        agentSession.composition.discoverableEntries,\n      );\n    }\n    const { harness } = agentSession;\n    const nodeExecutor = new SessionNodeExecutor({ workspaceDir: opts.projectDir });\n    // Same endpoints and credentials the session harness used: the registry\n    // and the credential env `createAgentSession` already resolved — not a\n    // new resolution, not a new secret channel.\n    const subpromptRunner = new SessionSubpromptRunner({\n      harnessType: agentSession.harnessType,\n      sessionModel: agentSession.model,\n      workspaceDir: opts.projectDir,\n      registry: agentSession.registry,\n      credentialEnv: agentSession.credentialEnv,\n      ...(agentSession.modelRef ? { modelRef: agentSession.modelRef } : {}),\n    });\n    let harnessStarted = false;\n    const updatedSession = { ...session };\n\n    // Track harness session ID so future resumes can reconnect the SDK thread.\n    harness.on(\"agent-event\", () => {\n      const runtimeSessionId = harness.runtimeSessionId;\n      if (!runtimeSessionId || runtimeSessionId === updatedSession.harnessSessionId) return;\n      updatedSession.harnessSessionId = runtimeSessionId;\n      void saveSession(opts.projectDir, updatedSession).catch(() => {});\n    });\n\n    // ── FlowAdapter + stimulus bus ─────────────────────────────────────────\n    //\n    // Phase 4 of the flow-connector extraction: SessionStimulusBus is the sole\n    // turn driver. The legacy FlowOrchestrator + onStateChange subscription\n    // are gone — every turn is initiated either by the bus (after an adapter\n    // mutation observed via `useBusForStimulus: true`) or by an explicit\n    // `bus.signal()` call from this function (the initial flow_started turn).\n    //\n    // The bus's `driveTurn` callback receives the stimulus paragraph the\n    // adapter rendered (not the full orchestrator prompt). It hands the turn to\n    // `driveOrchestratorTurn`, which rebuilds the five-section prompt so the\n    // agent sees the same flow context the legacy orchestrator produced — and\n    // announces it, so a CLI consumer's `onEvent` stream carries the prompt too.\n    const flowConnectorId = \"flow\";\n    const turnTimeoutMs = opts.sessionTimeoutMs ?? DEFAULT_SESSION_TIMEOUT_MS;\n\n    const ensureHarnessStarted = async (): Promise<void> => {\n      if (harnessStarted) return;\n      await harness.start();\n      harnessStarted = true;\n    };\n\n    // Same widening the `state_changed` forwarder below performs: `onEvent` is\n    // typed against the bridge's harness-level union, which has no case for a\n    // runtime-level event.\n    const emitFlowPrompt = (event: FlowPromptEvent): void => {\n      opts.onEvent?.(event as unknown as AgentEvent);\n    };\n\n    const inlineSubFlowRunner = new SessionInlineSubFlowRunner({\n      resolveFlow: (flowId) => loadFlow(resolveFlowPath(flowId, opts.projectDir)),\n      nodeExecutor,\n      subpromptRunner,\n      driveAgentTurn: async ({ flow: childFlow, execution, stimulus }) => {\n        await ensureHarnessStarted();\n        await driveOrchestratorTurn({\n          flow: childFlow,\n          execution,\n          stimulus,\n          emit: emitFlowPrompt,\n          deliver: (prompt) => awaitAgentEnd(harness, prompt, opts.onEvent, turnTimeoutMs),\n        });\n      },\n    });\n\n    // Forward declaration so `driveTurn` can read the live execution\n    // snapshot. Assigned just below, before the bus can fire.\n    let flowAdapterRef: FlowAdapter | null = null;\n    let flowHandleRef: import(\"@skaile/workspaces/connectors\").ConnectorHandle | null = null;\n\n    const stimulusBus = createSessionStimulusBus({\n      driveTurn: async (\n        promptFragment: string,\n        metas: Array<Record<string, unknown>>,\n      ): Promise<void> => {\n        // The adapter signal carries `meta.kind` per stimulus. Use that to\n        // reconstruct the typed `TurnStimulus`; for compound batches, fall\n        // back to `state_changed` (the union element that means \"look at\n        // current state and continue\").\n        const lastKind = metas[metas.length - 1]?.kind;\n        let stimulus: TurnStimulus;\n        if (lastKind === \"flow_started\") {\n          stimulus = { kind: \"flow_started\" };\n        } else if (\n          lastKind === \"user_message\" &&\n          typeof metas[metas.length - 1]?.text === \"string\"\n        ) {\n          const meta = metas[metas.length - 1] as Record<string, unknown>;\n          stimulus = {\n            kind: \"user_message\",\n            text: String(meta.text ?? \"\"),\n            senderId: String(meta.senderId ?? \"user\"),\n          };\n        } else {\n          stimulus = { kind: \"state_changed\" };\n        }\n        // The fragment passed in by the bus is the adapter's\n        // `renderStimulusPrompt(stim)` joined across coalesced signals. It is\n        // discarded in favour of the structured stimulus, which\n        // `driveOrchestratorTurn` rebuilds the full prompt from; that keeps the\n        // prompt shape stable and the structured form already contains\n        // everything the fragment encoded.\n        void promptFragment;\n        if (!flowAdapterRef || !flowHandleRef) {\n          throw new Error(\"driveTurn fired before FlowAdapter was wired\");\n        }\n        await flowAdapterRef.drainRuntimeNodes(flowHandleRef);\n        const execution = flowAdapterRef.getExecution(flowHandleRef);\n        if (execution.done || execution.status === \"failed\" || execution.status === \"cancelled\") {\n          return;\n        }\n        if (!flowAdapterRef.shouldDriveAgentTurn(flowHandleRef, stimulus)) return;\n        await ensureHarnessStarted();\n        await driveOrchestratorTurn({\n          flow,\n          execution,\n          stimulus,\n          emit: emitFlowPrompt,\n          deliver: (prompt) => awaitAgentEnd(harness, prompt, opts.onEvent, turnTimeoutMs),\n        });\n      },\n      log: flowLog,\n    });\n\n    const flowAdapter = new FlowAdapter();\n    const flowHandle = await flowAdapter.connect(\n      {\n        id: flowConnectorId,\n        driver: \"flow\",\n        access: \"read-write\" as const,\n        options: {\n          flow,\n          seed: {\n            runId: session.runId,\n            startedBy: \"cli\",\n            autonomousMode: opts.autonomousMode ?? true,\n          },\n          stimulusBus,\n          useBusForStimulus: true,\n          nodeExecutor,\n          subpromptRunner,\n          inlineSubFlowRunner,\n        },\n      },\n      {}, // flow needs no connect context\n    );\n    flowAdapterRef = flowAdapter;\n    flowHandleRef = flowHandle;\n\n    // Flow operations retain the connector's published bare protocol names;\n    // this is the intentional exception to generic capability namespaces.\n    for (const operation of flowAdapter.tools\n      .describeOperations(flowHandle)\n      .filter(({ name }) => FLOW_AGENT_OPERATION_NAMES.has(name))) {\n      const shape: Record<string, z.ZodType> = {};\n      for (const arg of operation.args) {\n        let schema: z.ZodType;\n        switch (arg.type) {\n          case \"boolean\":\n            schema = z.boolean();\n            break;\n          case \"number\":\n            schema = z.number();\n            break;\n          case \"json\":\n            schema = z.json();\n            break;\n          default:\n            schema = z.string();\n        }\n        shape[arg.name] = arg.required ? schema : schema.optional();\n      }\n      capabilityRegistry.register(\n        defineCapability({\n          name: operation.name,\n          displayName: operation.name,\n          description: operation.description,\n          input: z.object(shape),\n          side: \"agent\",\n          origin: { kind: \"flow\", flowId: flow.id },\n          scope: \"session\",\n          audience: [\"llm\"],\n          kind: operation.accessLevel === \"read\" ? \"query\" : \"effect\",\n          handler: async (args: Record<string, unknown>) =>\n            flowAdapter.executeOp(flowHandle, operation.name, args),\n        }),\n        \"agent\",\n      );\n    }\n\n    // Forward state_changed events to the caller. The bus computes a\n    // turn-kicking stimulus on each adapter mutation; the host-facing\n    // event stream still observes the full snapshot via onChange.\n    flowAdapter.onStateChange(flowHandle, (state: FlowExecution) => {\n      opts.onEvent?.({\n        type: \"state_changed\",\n        store: `flow:${state.runId}`,\n        state: state as unknown as Record<string, unknown>,\n      } as unknown as AgentEvent);\n    });\n\n    // ── Execute ────────────────────────────────────────────────────────────\n    flowLog.info(\"starting flow\", {\n      flowId: flow.id,\n      flowName: flow.name,\n      runId: session.runId,\n    });\n\n    let runError: unknown;\n    try {\n      // Kick the initial flow_started turn explicitly. Subsequent turns are\n      // driven by the bus signaling whenever the adapter mutates.\n      const initialStimulus: TurnStimulus = { kind: \"flow_started\" };\n      await stimulusBus.signal(flowConnectorId, {\n        promptFragment: renderStimulusPrompt(initialStimulus),\n        meta: { kind: initialStimulus.kind },\n      });\n\n      const finalState = flowAdapter.getExecution(flowHandle);\n      if (finalState.done) {\n        flowLog.info(\"flow complete\", { flowId: flow.id, flowName: flow.name });\n      } else if (finalState.status === \"failed\") {\n        flowLog.error(\"flow failed\", undefined, { flowId: flow.id, flowName: flow.name });\n      } else {\n        flowLog.warn(\"flow paused awaiting further stimulus\", {\n          flowId: flow.id,\n          status: finalState.status,\n          note: \"CLI mode does not supply human approval/input decisions\",\n        });\n      }\n    } catch (err) {\n      // The harness could not start (SDK missing, bad credentials, …): no node ran, so the\n      // session is `failed` with the cause, not a `paused` run that `resume` would pick up.\n      runError = err;\n      throw err;\n    } finally {\n      harness.kill();\n      const lastState = flowAdapter.getExecution(flowHandle);\n      const failed = runError !== undefined;\n      let status: \"complete\" | \"failed\" | \"paused\" = \"paused\";\n      if (failed) status = \"failed\";\n      else if (lastState.status === \"complete\") status = \"complete\";\n      await saveSession(\n        opts.projectDir,\n        touchSession({\n          ...updatedSession,\n          harnessSessionId: harness.runtimeSessionId ?? updatedSession.harnessSessionId,\n          status,\n          ...(failed\n            ? { error: runError instanceof Error ? runError.message : String(runError) }\n            : {}),\n        }),\n      ).catch(() => {});\n      await flowAdapter.disconnect(flowHandle).catch(() => {});\n      await agentSession.dispose();\n      telemetry.endTrace(flowTrace, {\n        status: flowAdapter.getExecution(flowHandle).status === \"complete\" ? \"ok\" : \"error\",\n      });\n      await telemetry.flush().catch(() => {});\n    }\n  } finally {\n    disposeLogStore();\n  }\n}\n\n/**\n * Resume an existing session from the CLI.\n *\n * With the Phase 2 turn-based model, flow state is NOT persisted to\n * local session files — only the harness session ID is kept. The CLI\n * can resume the agent's conversation thread, but the flow execution\n * itself starts from scratch because the runner has no durable store\n * for per-run state.\n *\n * For a governed, resumable flow run, use a host that persists flow\n * state (e.g. the Skaile platform). CLI resume is retained as a\n * harness-level convenience only: we load the session, restart the\n * flow, and the SDK will reconnect to the prior conversation thread.\n *\n * @docLink packages/factory-assets/flow#resume-flow\n */\nexport async function resumeFlow(opts: ResumeOptions): Promise<void> {\n  const runner = await loadRunnerModule();\n  const { loadSession, loadSessionById, bootstrapRunnerLogStore } = runner;\n\n  const session = opts.sessionId\n    ? await loadSessionById(opts.projectDir, opts.sessionId)\n    : await loadSession(opts.projectDir);\n\n  if (!session) {\n    const hint = opts.sessionId\n      ? `session ${opts.sessionId}`\n      : `current session in ${opts.projectDir}/.skaile`;\n    throw new Error(`No session found (${hint}) — run 'start' first`);\n  }\n\n  const flowPath = resolveFlowPath(session.flowId, opts.projectDir);\n\n  // Bootstrap a transient logger for the resume diagnostics. The inner\n  // runFlow() call will register its own LogStore for the new run. Keep\n  // OnLogBridgeSink wiring so callers passing onLog still see this line.\n  const wsConfigEarly = resolveSkWorkspaceConfig(opts.projectDir);\n  const { dispose: disposeLogStore } = bootstrapRunnerLogStore({\n    sessionId: session.runId,\n    projectDir: opts.projectDir,\n    yamlBlock: wsConfigEarly.logging,\n    onLog: opts.onLog,\n    stdout: opts.onLog === undefined,\n  });\n  const flowLog = createLogger({\n    kind: \"flow-connector\",\n    subkind: \"run\",\n    instance: session.runId,\n  });\n  flowLog.info(\"resuming session\", {\n    runId: session.runId,\n    flowId: session.flowId,\n    note: \"CLI mode does not persist flow state — flow restarts from scratch; harness thread resumes\",\n  });\n\n  try {\n    await runFlow({\n      projectDir: opts.projectDir,\n      flowPath,\n      agentDir: opts.agentDir ?? session.agentDir,\n      harness: session.harness,\n      model: session.model,\n      sessionLabel: session.label,\n      resumeSession: session,\n      dryRun: opts.dryRun,\n      sessionTimeoutMs: opts.sessionTimeoutMs,\n      onEvent: opts.onEvent,\n      onLog: opts.onLog,\n    });\n  } finally {\n    disposeLogStore();\n  }\n}\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\nasync function validatePinnedVersions(\n  flow: Awaited<ReturnType<typeof loadFlow>>,\n  projectDir: string,\n  log: (line: string) => void,\n): Promise<void> {\n  const pinnedNodes = flowSkillVersionPins(flow);\n  if (pinnedNodes.length === 0) return;\n\n  const skillVersions = new Map<string, string>();\n  const aiResourcesDir = findAiResourcesDir(projectDir);\n  if (aiResourcesDir) {\n    for (const node of pinnedNodes) {\n      const skillId = node.skillId;\n      if (skillVersions.has(skillId)) continue;\n      const skillPath = findSkillMd(aiResourcesDir, skillId);\n      if (skillPath) {\n        const content = fs.readFileSync(skillPath, \"utf-8\");\n        const fm = parseSkillFrontmatter(content);\n        skillVersions.set(skillId, fm.metadata?.version ?? fm.version ?? \"\");\n      }\n    }\n  }\n\n  const checks = validateFlowVersions(pinnedNodes, skillVersions);\n  const failures = checks.filter((c) => !c.satisfied);\n  if (failures.length > 0) {\n    const lines = failures.map(\n      (f) => `  ${f.nodeId}: wants ${f.requested}, found ${f.actual || \"(none)\"}`,\n    );\n    throw new Error(`Skill version mismatch:\\n${lines.join(\"\\n\")}`);\n  }\n  for (const c of checks.filter((c) => c.satisfied)) {\n    log(`  Version OK: ${c.skillId} ${c.actual} satisfies ${c.requested}`);\n  }\n}\n\n/**\n * Assert `found` sits inside one of `roots`.\n *\n * A backstop, not the primary control: `isValidAssetName` already rejects every\n * id containing a separator, and `findFlowFileInRoots` skips any candidate that\n * escapes its search dir. So on today's code this cannot fire — it is here to\n * fail loudly rather than silently if a future lookup stops enforcing\n * containment itself. Widening the accepted extensions must never widen which\n * paths are reachable, and this is the line that keeps that honest.\n */\nfunction assertContainedInAnyRoot(found: string, roots: string[], flowId: string): void {\n  const resolved = path.resolve(found);\n  const inside = roots.some((root) => {\n    const relative = path.relative(path.resolve(root), resolved);\n    return !relative.startsWith(\"..\") && !path.isAbsolute(relative);\n  });\n  if (!inside) {\n    throw new Error(`Flow path escapes its lookup root: ${JSON.stringify(flowId)}`);\n  }\n}\n\n/** One line per near-miss: a file that is right there but was still rejected. */\nfunction describeMisses(misses: FlowLookupMiss[], heading: string): string {\n  const seen = new Set<string>();\n  const lines: string[] = [];\n  for (const miss of misses) {\n    if (seen.has(miss.path)) continue;\n    seen.add(miss.path);\n    lines.push(\n      miss.reason === \"id-mismatch\"\n        ? `  ${miss.path}: declares id ${JSON.stringify(miss.declaredId ?? \"\")}`\n        : `  ${miss.path}: could not be parsed (${miss.error ?? \"unknown error\"})`,\n    );\n  }\n  return lines.length > 0 ? `\\n${heading}\\n${lines.join(\"\\n\")}` : \"\";\n}\n\n/**\n * Resolve one flow identity through the CLI/serve host's normal lookup order —\n * the same roots and filenames `skaile run` and `flow list` use, via\n * {@link flowLookupRoots} / {@link findFlowFileInRoots}. Resolution is by the\n * **declared** `id`, not by filename.\n *\n * @throws {Error} When `flowId` is not a canonical asset name, when no file\n *   declares it, or when a match somehow resolves outside every lookup root.\n */\nexport function resolveFlowPath(flowId: string, projectDir: string): string {\n  // Sub-flow targets and resumed session records are the two callers, so an\n  // identity that is not canonical is a bug in the caller, not a missing file.\n  if (!isValidAssetName(flowId)) {\n    throw new Error(`Invalid canonical flow identity: ${JSON.stringify(flowId)}`);\n  }\n\n  const roots = flowLookupRoots(projectDir);\n  const misses: FlowLookupMiss[] = [];\n  const found = findFlowFileInRoots(flowId, roots, { onMiss: (m) => misses.push(m) });\n  if (found) {\n    assertContainedInAnyRoot(found, roots, flowId);\n    return found;\n  }\n\n  // A file that is present but unparseable is a different problem from a missing\n  // one, and \"not found\" is the wrong headline for it — that exact misdirection\n  // is what this change exists to remove, so don't reintroduce it here.\n  if (misses.length > 0 && misses.every((m) => m.reason === \"unparseable\")) {\n    throw new Error(\n      `Flow ${flowId} was found but could not be loaded.` + describeMisses(misses, \"Candidates:\"),\n    );\n  }\n\n  const shown = roots.slice(0, 3).join(\", \");\n  const more = roots.length > 3 ? \", …\" : \"\";\n  // Spelled from FLOW_FILE_EXTENSIONS so the message cannot drift from the\n  // candidate list the lookup actually probes.\n  const accepted = FLOW_FILE_EXTENSIONS.map((ext) => `${flowId}${ext}`).join(\" | \");\n  throw new Error(\n    `Flow not found: ${flowId}. Searched ${roots.length} root(s) (${shown || \"none\"}${more}) ` +\n      `for ${accepted} — flat, or inside a ${flowId}/ directory. ` +\n      `Only the flows of this project are found: run \\`skaile add flow:@<publisher>/<name>\\` first for a flow that lives in a library or source.` +\n      describeMisses(misses, \"Near misses:\"),\n  );\n}\n\n/** Walk up from projectDir to find ai-assets/ */\nfunction findAiResourcesDir(projectDir: string): string | null {\n  let dir = projectDir;\n  for (let i = 0; i < 6; i++) {\n    const candidate = path.join(dir, \"ai-assets\");\n    if (fs.existsSync(candidate)) return candidate;\n    const parent = path.dirname(dir);\n    if (parent === dir) break;\n    dir = parent;\n  }\n  return null;\n}\n\n/** Find SKILL.md for a given skill ID in any `skills/` directory under ai-assets */\nfunction findSkillMd(aiResourcesDir: string, skillId: string): string | null {\n  for (const skillsDir of findKindDirs(aiResourcesDir, \"skills\")) {\n    const found = walkForSkill(skillsDir, skillId);\n    if (found) return found;\n  }\n  return null;\n}\n\n// ---------------------------------------------------------------------------\n// Turn-wait helper\n// ---------------------------------------------------------------------------\n\n/**\n * Minimal harness surface needed by the bus's `driveTurn` callback. Mirrors\n * the slice the legacy `FlowOrchestrator` consumed (`prompt` + `on` +\n * `removeAllListeners`) so we can keep the wait helper private to this\n * module without pulling in a runtime dep on `@skaile/workspaces/bridge`.\n */\ninterface TurnHarnessSurface {\n  prompt(message: string): Promise<void>;\n  on(event: \"agent-event\", handler: (event: AgentEvent) => void): void;\n  removeAllListeners(event: \"agent-event\"): void;\n}\n\n/**\n * Send a prompt to the harness and resolve when the agent emits\n * `agent_end` (or reject on an `error` that is not an in-place retry).\n * Identical contract to the legacy `awaitAgentEnd` helper from\n * `flow-orchestrator.ts`. Phase 4 lifts the helper into `run-flow.ts` because\n * the bus now owns turn driving. 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* runFlow / resumeFlow — CLI entry helpers for the flow connector.\n *\n * Moved from `runner/src/runner.ts` to `factory-assets/connectors/flow/run-flow.ts`\n * in Phase 3 of the flow-connector extraction (2026-05-08). Behaviour is\n * byte-identical to the previous runner-side implementation; only the log\n * source changes from `runner:flow:<runId>` to `flow-connector:run:<runId>`.\n *\n * The runner re-exports these symbols with a deprecation warning for one\n * release. CLI consumers should switch to\n * `import { runFlow, resumeFlow } from \"@skaile/workspaces/factory-assets/connectors/flow/run-flow\"`.\n *\n * Internal runner helpers (FlowOrchestrator, bootstrapRunnerLogStore,\n * createAgentSession, resolveHarnessPaths, session helpers) are loaded lazily\n * via dynamic `await import(\"@skaile/workspaces/runner\")` inside\n * `loadRunnerModule()` below. The lazy load avoids a static package-level\n * cycle (runner → connectors → factory-assets → runner) — the cycle exists at\n * the workspace level but never resolves at module-load time because\n * factory-assets only ever calls `import` from inside an async function body.\n * The string-literal specifier preserves `bun --compile` and tsup static\n * analysis.\n */\n\nimport fs from \"node:fs\";\nimport path from \"node:path\";\nimport type { AgentEvent } from \"@skaile/workspaces/bridge\";\nimport {\n  DEFAULT_HARNESS_ID,\n  findKindDirs,\n  isValidAssetName,\n  resolveAgentDir,\n  resolveSettings,\n  resolveSkWorkspaceConfig,\n} from \"@skaile/workspaces/core\";\nimport { createLogger } from \"@skaile/workspaces/core/logging\";\nimport { parseSkillFrontmatter, validateFlowVersions } from \"@skaile/workspaces/resolver\";\nimport { initTelemetry } from \"@skaile/workspaces/telemetry\";\nimport type { FlowExecution, FlowPromptEvent } from \"@skaile/workspaces/types\";\nimport * as z from \"zod\";\nimport { FlowAdapter } from \"./adapter.js\";\nimport {\n  findFlowFileInRoots,\n  FLOW_FILE_EXTENSIONS,\n  type FlowLookupMiss,\n  flowLookupRoots,\n  loadFlow,\n} from \"./engine/index.js\";\nimport { flowSkillVersionPins } from \"./engine/node-shape.js\";\nimport { SessionInlineSubFlowRunner } from \"./inline-sub-flow-host.js\";\nimport { SessionNodeExecutor } from \"./node-executor.js\";\nimport { driveOrchestratorTurn } from \"./orchestrator-turn.js\";\nimport { renderStimulusPrompt, type TurnStimulus } from \"./prompt-fragments.js\";\nimport { SessionSubpromptRunner } from \"./subprompt-runner.js\";\n\n/**\n * Lazy `import(\"@skaile/workspaces/runner\")` accessor. Cached on first call so\n * subsequent `runFlow` invocations don't re-evaluate the runner module.\n *\n * Dynamic ESM import is used (not `require`) so vitest and other ESM\n * bundlers honour their alias resolution — `require` would side-step the\n * configured aliases and pick up two distinct module instances when run\n * under vitest. The string-literal specifier ensures bun --compile keeps\n * the dependency (per the static-import-or-die rule in\n * connectors/CLAUDE.md).\n */\n// eslint-disable-next-line @typescript-eslint/no-explicit-any\nlet _runnerModule: any | undefined;\n// eslint-disable-next-line @typescript-eslint/no-explicit-any\nasync function loadRunnerModule(): Promise<any> {\n  if (_runnerModule) return _runnerModule;\n  _runnerModule = await import(\"@skaile/workspaces/runner\");\n  return _runnerModule;\n}\n\n/** Type-only re-export of SessionState so the runner tombstone shim still works. */\nexport type SessionState = import(\"@skaile/workspaces/runner\").SessionState;\n\n/** Maximum agent session duration (4 hours). Configurable via {@link RunOptions.sessionTimeoutMs}. */\nconst DEFAULT_SESSION_TIMEOUT_MS = 4 * 60 * 60 * 1000; // 4 hours\n\nconst FLOW_AGENT_OPERATION_NAMES = new Set([\n  \"get_available\",\n  \"get_state\",\n  \"get_globals\",\n  \"build_handoff\",\n  \"validate_node\",\n  \"start_node\",\n  \"request_approval\",\n  \"request_input\",\n  \"complete_node\",\n  \"skip_node\",\n  \"fail_node\",\n]);\n\n/**\n * Options for {@link runFlow}.\n *\n * Wraps `FlowOrchestrator` with autonomous mode turned on by default. First-class\n * gate nodes remain mandatory human decisions in every mode.\n *\n * @docLink packages/factory-assets/flow#run-flow\n */\nexport interface RunOptions {\n  /** The working directory for the project being orchestrated. */\n  projectDir: string;\n  /** Absolute path to the `.flow.yaml` or `.flow.json` definition file. */\n  flowPath: string;\n  /**\n   * Directory containing `agent.yaml`, `SOUL.md`, `RULES.md`, `knowledge/`.\n   * Resolved from `skaile.yaml` via `resolveAgentDir` when absent.\n   */\n  agentDir?: string;\n  /**\n   * Agent harness. Defaults to `settings.harness` (`\"omp\"` or `\"claude-sdk\"`).\n   */\n  harness?: string;\n  /**\n   */\n  /**\n   * Model name override. Falls back to `settings.model` when absent.\n   */\n  model?: string;\n  /**\n   * Path to a specific `settings.json` to load instead of the default\n   * layered resolution chain (project → parent → global → built-in defaults).\n   */\n  settingsFile?: string;\n  /**\n   * When `true`, prints the initial flow state without starting the agent\n   * and returns immediately.\n   */\n  dryRun?: boolean;\n  /**\n   * Per-session timeout in milliseconds. Defaults to\n   * {@link DEFAULT_SESSION_TIMEOUT_MS} (4 hours).\n   */\n  sessionTimeoutMs?: number;\n  /** Optional human-readable label shown in the session list. */\n  sessionLabel?: string;\n  /**\n   * The session `skaile resume` continues. Its run id is kept and its harness thread resumed,\n   * instead of starting a second session. Set by {@link resumeFlow}; not for other callers.\n   */\n  resumeSession?: SessionState;\n  /** Autonomous mode for CLI runs. Defaults to true; first-class gate nodes are never bypassed. */\n  autonomousMode?: boolean;\n  /**\n   * Called for each {@link AgentEvent} emitted during the run\n   * (e.g. `text`, `tool_call`, `state_changed`).\n   */\n  onEvent?: (event: AgentEvent) => void;\n  /**\n   * Called for each diagnostic log line. Defaults to `process.stdout`.\n   */\n  onLog?: (line: string) => void;\n}\n\n/**\n * Options for resuming an existing CLI session.\n *\n * Reconnects the harness's conversation thread (conversation history is\n * preserved via the stored `harnessSessionId`) but restarts flow execution\n * from scratch — flow state is not persisted in CLI mode. For governed,\n * resumable flow runs use a host that persists flow state (e.g. the Skaile\n * platform).\n *\n * @docLink packages/factory-assets/flow#resume-flow\n */\nexport interface ResumeOptions {\n  /** The working directory for the project being orchestrated. */\n  projectDir: string;\n  /**\n   * Specific run ID to resume. When absent, the current session pointer\n   * at `<projectDir>/.skaile/current` is used.\n   */\n  sessionId?: string;\n  /**\n   * Agent definition directory override. Defaults to the directory stored\n   * in the session file.\n   */\n  agentDir?: string;\n  /**\n   * When `true`, prints the initial flow state without starting the agent\n   * and returns immediately.\n   */\n  dryRun?: boolean;\n  /**\n   * Per-session timeout in milliseconds. Defaults to\n   * {@link DEFAULT_SESSION_TIMEOUT_MS} (4 hours).\n   */\n  sessionTimeoutMs?: number;\n  /**\n   * Called for each {@link AgentEvent} emitted during the run.\n   */\n  onEvent?: RunOptions[\"onEvent\"];\n  /**\n   * Called for each diagnostic log line. Defaults to `process.stdout`.\n   */\n  onLog?: RunOptions[\"onLog\"];\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Start a new flow session from the CLI.\n *\n * Wraps `FlowOrchestrator` with autonomous mode turned on by default. The\n * runner remains idle between turns; first-class gates always park for a human\n * decision, including in autonomous mode. Non-CLI hosts (Skaile platform,\n * Pichi) use the orchestrator directly via the serve command surface and drive\n * gates through user actions.\n *\n * @docLink packages/factory-assets/flow#run-flow\n */\nexport async function runFlow(opts: RunOptions): Promise<void> {\n  const runner = await loadRunnerModule();\n  const {\n    bootstrapRunnerLogStore,\n    bootstrapCapabilityRegistry,\n    CapabilityRegistry,\n    createAgentSession,\n    createSessionStimulusBus,\n    defineCapability,\n    registerCompositionCapabilities,\n    resolveHarnessPaths,\n    newSession,\n    saveSession,\n    touchSession,\n  } = runner;\n\n  const flow = loadFlow(opts.flowPath);\n  const agentDir = opts.agentDir ?? resolveAgentDir(opts.projectDir);\n  const settings = await resolveSettings(opts.projectDir, {\n    harness: opts.harness,\n    model: opts.model,\n  });\n\n  // `skaile resume` continues the session it was given: same run id, so the harness thread\n  // (`harnessSessionId`) resumes and `session list` shows one run, not a second one (p850).\n  const session = opts.resumeSession\n    ? (({ error: _prior, ...kept }) => touchSession({ ...kept, status: \"running\" }))(\n        opts.resumeSession,\n      )\n    : newSession({\n        flowId: flow.id,\n        projectDir: opts.projectDir,\n        agentDir,\n        harness: settings.harness ?? DEFAULT_HARNESS_ID,\n        model: settings.model,\n        label: opts.sessionLabel,\n      });\n\n  // A dry run only prints the plan: it must not leave a `running` session behind.\n  if (!opts.dryRun) await saveSession(opts.projectDir, session);\n\n  // Bootstrap structured logging — registers a process-singleton LogStore.\n  // OnLogBridgeSink mirrors entries to opts.onLog when caller provides one,\n  // preserving back-compat with CLI hosts that consume plain text lines.\n  const wsConfigEarly = resolveSkWorkspaceConfig(opts.projectDir);\n  const { dispose: disposeLogStore } = bootstrapRunnerLogStore({\n    sessionId: session.runId,\n    projectDir: opts.projectDir,\n    yamlBlock: wsConfigEarly.logging,\n    onLog: opts.onLog,\n    // A host that takes lines through `onLog` prints them itself; the stdout\n    // sink would add every record again as a raw JSON line.\n    stdout: opts.onLog === undefined,\n  });\n  const flowLog = createLogger({\n    kind: \"flow-connector\",\n    subkind: \"run\",\n    instance: session.runId,\n  });\n  const log = (line: string) => flowLog.info(line);\n  const capabilityRegistry = new CapabilityRegistry();\n  bootstrapCapabilityRegistry(capabilityRegistry);\n  const capabilityHooks = {\n    sessionId: session.runId,\n    composeTools: () => capabilityRegistry.composeLLMTools(),\n    resolve: (name: string) =>\n      capabilityRegistry.list().find((cap: { name: string }) => cap.name === name) ?? null,\n    invoke: (name: string, input: unknown, _signal?: AbortSignal, callId?: string) =>\n      capabilityRegistry.invoke(name, input, { sessionId: session.runId, callId }),\n  };\n\n  try {\n    // ── Dry run ────────────────────────────────────────────────────────────\n    if (opts.dryRun) {\n      const adapter = new FlowAdapter();\n      const handle = await adapter.connect(\n        {\n          id: \"flow\",\n          driver: \"flow\",\n          access: \"read-only\" as const,\n          options: { flow, seed: { runId: session.runId, startedBy: \"cli\" } },\n        },\n        {}, // flow needs no connect context\n      );\n      const state = adapter.getExecution(handle);\n      const available = Object.values(state.nodes)\n        .filter((n) => n.status === \"available\")\n        .map((n) => n.id);\n      // The plan is the command's output, not a log event: print it as plain lines\n      // (no `[info] [flow-connector:run:…]` prefix from the log formatter).\n      const printPlan = opts.onLog ?? ((line: string) => console.log(line));\n      printPlan(`[dry-run] Flow: ${flow.name} (${flow.id})`);\n      printPlan(`[dry-run] Available: ${available.join(\", \") || \"(none)\"}`);\n      await adapter.disconnect(handle);\n      return;\n    }\n\n    await validatePinnedVersions(flow, opts.projectDir, log);\n\n    // ── Telemetry initialization ────────────────────────────────────────────\n    const wsConfig = wsConfigEarly;\n    const telemetry = await initTelemetry(wsConfig.telemetry);\n    const flowTrace = telemetry.startTrace({\n      name: `flow:${flow.id}`,\n      kind: \"flow_run\",\n      attributes: {\n        \"skaile.flow.id\": flow.id,\n        \"skaile.flow.run_id\": session.runId,\n      },\n    });\n\n    // ── Agent session setup ─────────────────────────────────────────────────\n    const harnessPaths = resolveHarnessPaths(settings);\n    const agentSession = await createAgentSession({\n      projectDir: opts.projectDir,\n      agentDir: session.agentDir,\n      harness: session.harness,\n      model: session.model,\n      resumeSessionId: session.harnessSessionId,\n      projectClaudeMd: path.join(opts.projectDir, \"CLAUDE.md\"),\n      promptsDir: path.join(opts.projectDir, harnessPaths.promptsDir),\n      sessionId: session.runId,\n      onLog: log,\n      telemetry,\n      trace: flowTrace,\n      wsConfig,\n      capabilities: capabilityHooks,\n      capabilityRegistry,\n      // A flow step has no one to answer an approval card: with `permission_mode: interactive`\n      // a tool call that needs approval is refused instead of hanging the step.\n      unattended: true,\n    });\n    if (agentSession.composition?.discoverableEntries.length) {\n      registerCompositionCapabilities(\n        capabilityRegistry,\n        agentSession.composition.discoverableEntries,\n      );\n    }\n    const { harness } = agentSession;\n    const nodeExecutor = new SessionNodeExecutor({ workspaceDir: opts.projectDir });\n    // Same endpoints and credentials the session harness used: the registry\n    // and the credential env `createAgentSession` already resolved — not a\n    // new resolution, not a new secret channel.\n    const subpromptRunner = new SessionSubpromptRunner({\n      harnessType: agentSession.harnessType,\n      sessionModel: agentSession.model,\n      workspaceDir: opts.projectDir,\n      registry: agentSession.registry,\n      credentialEnv: agentSession.credentialEnv,\n      ...(agentSession.modelRef ? { modelRef: agentSession.modelRef } : {}),\n    });\n    let harnessStarted = false;\n    const updatedSession = { ...session };\n\n    // Track harness session ID so future resumes can reconnect the SDK thread.\n    harness.on(\"agent-event\", () => {\n      const runtimeSessionId = harness.runtimeSessionId;\n      if (!runtimeSessionId || runtimeSessionId === updatedSession.harnessSessionId) return;\n      updatedSession.harnessSessionId = runtimeSessionId;\n      void saveSession(opts.projectDir, updatedSession).catch(() => {});\n    });\n\n    // ── FlowAdapter + stimulus bus ─────────────────────────────────────────\n    //\n    // Phase 4 of the flow-connector extraction: SessionStimulusBus is the sole\n    // turn driver. The legacy FlowOrchestrator + onStateChange subscription\n    // are gone — every turn is initiated either by the bus (after an adapter\n    // mutation observed via `useBusForStimulus: true`) or by an explicit\n    // `bus.signal()` call from this function (the initial flow_started turn).\n    //\n    // The bus's `driveTurn` callback receives the stimulus paragraph the\n    // adapter rendered (not the full orchestrator prompt). It hands the turn to\n    // `driveOrchestratorTurn`, which rebuilds the five-section prompt so the\n    // agent sees the same flow context the legacy orchestrator produced — and\n    // announces it, so a CLI consumer's `onEvent` stream carries the prompt too.\n    const flowConnectorId = \"flow\";\n    const turnTimeoutMs = opts.sessionTimeoutMs ?? DEFAULT_SESSION_TIMEOUT_MS;\n\n    const ensureHarnessStarted = async (): Promise<void> => {\n      if (harnessStarted) return;\n      await harness.start();\n      harnessStarted = true;\n    };\n\n    // Same widening the `state_changed` forwarder below performs: `onEvent` is\n    // typed against the bridge's harness-level union, which has no case for a\n    // runtime-level event.\n    const emitFlowPrompt = (event: FlowPromptEvent): void => {\n      opts.onEvent?.(event as unknown as AgentEvent);\n    };\n\n    const inlineSubFlowRunner = new SessionInlineSubFlowRunner({\n      resolveFlow: (flowId) => loadFlow(resolveFlowPath(flowId, opts.projectDir)),\n      nodeExecutor,\n      subpromptRunner,\n      driveAgentTurn: async ({ flow: childFlow, execution, stimulus }) => {\n        await ensureHarnessStarted();\n        await driveOrchestratorTurn({\n          flow: childFlow,\n          execution,\n          stimulus,\n          emit: emitFlowPrompt,\n          deliver: (prompt) => awaitAgentEnd(harness, prompt, opts.onEvent, turnTimeoutMs),\n        });\n      },\n    });\n\n    // Forward declaration so `driveTurn` can read the live execution\n    // snapshot. Assigned just below, before the bus can fire.\n    let flowAdapterRef: FlowAdapter | null = null;\n    let flowHandleRef: import(\"@skaile/workspaces/connectors\").ConnectorHandle | null = null;\n\n    const stimulusBus = createSessionStimulusBus({\n      driveTurn: async (\n        promptFragment: string,\n        metas: Array<Record<string, unknown>>,\n      ): Promise<void> => {\n        // The adapter signal carries `meta.kind` per stimulus. Use that to\n        // reconstruct the typed `TurnStimulus`; for compound batches, fall\n        // back to `state_changed` (the union element that means \"look at\n        // current state and continue\").\n        const lastKind = metas[metas.length - 1]?.kind;\n        let stimulus: TurnStimulus;\n        if (lastKind === \"flow_started\") {\n          stimulus = { kind: \"flow_started\" };\n        } else if (\n          lastKind === \"user_message\" &&\n          typeof metas[metas.length - 1]?.text === \"string\"\n        ) {\n          const meta = metas[metas.length - 1] as Record<string, unknown>;\n          stimulus = {\n            kind: \"user_message\",\n            text: String(meta.text ?? \"\"),\n            senderId: String(meta.senderId ?? \"user\"),\n          };\n        } else {\n          stimulus = { kind: \"state_changed\" };\n        }\n        // The fragment passed in by the bus is the adapter's\n        // `renderStimulusPrompt(stim)` joined across coalesced signals. It is\n        // discarded in favour of the structured stimulus, which\n        // `driveOrchestratorTurn` rebuilds the full prompt from; that keeps the\n        // prompt shape stable and the structured form already contains\n        // everything the fragment encoded.\n        void promptFragment;\n        if (!flowAdapterRef || !flowHandleRef) {\n          throw new Error(\"driveTurn fired before FlowAdapter was wired\");\n        }\n        await flowAdapterRef.drainRuntimeNodes(flowHandleRef);\n        const execution = flowAdapterRef.getExecution(flowHandleRef);\n        if (execution.done || execution.status === \"failed\" || execution.status === \"cancelled\") {\n          return;\n        }\n        if (!flowAdapterRef.shouldDriveAgentTurn(flowHandleRef, stimulus)) return;\n        await ensureHarnessStarted();\n        await driveOrchestratorTurn({\n          flow,\n          execution,\n          stimulus,\n          emit: emitFlowPrompt,\n          deliver: (prompt) => awaitAgentEnd(harness, prompt, opts.onEvent, turnTimeoutMs),\n        });\n      },\n      log: flowLog,\n    });\n\n    const flowAdapter = new FlowAdapter();\n    const flowHandle = await flowAdapter.connect(\n      {\n        id: flowConnectorId,\n        driver: \"flow\",\n        access: \"read-write\" as const,\n        options: {\n          flow,\n          seed: {\n            runId: session.runId,\n            startedBy: \"cli\",\n            autonomousMode: opts.autonomousMode ?? true,\n          },\n          stimulusBus,\n          useBusForStimulus: true,\n          nodeExecutor,\n          subpromptRunner,\n          inlineSubFlowRunner,\n        },\n      },\n      {}, // flow needs no connect context\n    );\n    flowAdapterRef = flowAdapter;\n    flowHandleRef = flowHandle;\n\n    // Flow operations retain the connector's published bare protocol names;\n    // this is the intentional exception to generic capability namespaces.\n    for (const operation of flowAdapter.tools\n      .describeOperations(flowHandle)\n      .filter(({ name }) => FLOW_AGENT_OPERATION_NAMES.has(name))) {\n      const shape: Record<string, z.ZodType> = {};\n      for (const arg of operation.args) {\n        let schema: z.ZodType;\n        switch (arg.type) {\n          case \"boolean\":\n            schema = z.boolean();\n            break;\n          case \"number\":\n            schema = z.number();\n            break;\n          case \"json\":\n            schema = z.json();\n            break;\n          default:\n            schema = z.string();\n        }\n        shape[arg.name] = arg.required ? schema : schema.optional();\n      }\n      capabilityRegistry.register(\n        defineCapability({\n          name: operation.name,\n          displayName: operation.name,\n          description: operation.description,\n          input: z.object(shape),\n          side: \"agent\",\n          origin: { kind: \"flow\", flowId: flow.id },\n          scope: \"session\",\n          audience: [\"llm\"],\n          kind: operation.accessLevel === \"read\" ? \"query\" : \"effect\",\n          handler: async (args: Record<string, unknown>) =>\n            flowAdapter.executeOp(flowHandle, operation.name, args),\n        }),\n        \"agent\",\n      );\n    }\n\n    // Forward state_changed events to the caller. The bus computes a\n    // turn-kicking stimulus on each adapter mutation; the host-facing\n    // event stream still observes the full snapshot via onChange.\n    flowAdapter.onStateChange(flowHandle, (state: FlowExecution) => {\n      opts.onEvent?.({\n        type: \"state_changed\",\n        store: `flow:${state.runId}`,\n        state: state as unknown as Record<string, unknown>,\n      } as unknown as AgentEvent);\n    });\n\n    // ── Execute ────────────────────────────────────────────────────────────\n    flowLog.info(\"starting flow\", {\n      flowId: flow.id,\n      flowName: flow.name,\n      runId: session.runId,\n    });\n\n    let runError: unknown;\n    try {\n      // Kick the initial flow_started turn explicitly. Subsequent turns are\n      // driven by the bus signaling whenever the adapter mutates.\n      const initialStimulus: TurnStimulus = { kind: \"flow_started\" };\n      await stimulusBus.signal(flowConnectorId, {\n        promptFragment: renderStimulusPrompt(initialStimulus),\n        meta: { kind: initialStimulus.kind },\n      });\n\n      const finalState = flowAdapter.getExecution(flowHandle);\n      if (finalState.done) {\n        flowLog.info(\"flow complete\", { flowId: flow.id, flowName: flow.name });\n      } else if (finalState.status === \"failed\") {\n        flowLog.error(\"flow failed\", undefined, { flowId: flow.id, flowName: flow.name });\n      } else {\n        flowLog.warn(\"flow paused awaiting further stimulus\", {\n          flowId: flow.id,\n          status: finalState.status,\n          note: \"CLI mode does not supply human approval/input decisions\",\n        });\n      }\n    } catch (err) {\n      // The harness could not start (SDK missing, bad credentials, …): no node ran, so the\n      // session is `failed` with the cause, not a `paused` run that `resume` would pick up.\n      runError = err;\n      throw err;\n    } finally {\n      harness.kill();\n      const lastState = flowAdapter.getExecution(flowHandle);\n      const failed = runError !== undefined;\n      let status: \"complete\" | \"failed\" | \"paused\" = \"paused\";\n      if (failed) status = \"failed\";\n      else if (lastState.status === \"complete\") status = \"complete\";\n      await saveSession(\n        opts.projectDir,\n        touchSession({\n          ...updatedSession,\n          harnessSessionId: harness.runtimeSessionId ?? updatedSession.harnessSessionId,\n          status,\n          ...(failed\n            ? { error: runError instanceof Error ? runError.message : String(runError) }\n            : {}),\n        }),\n      ).catch(() => {});\n      await flowAdapter.disconnect(flowHandle).catch(() => {});\n      await agentSession.dispose();\n      telemetry.endTrace(flowTrace, {\n        status: flowAdapter.getExecution(flowHandle).status === \"complete\" ? \"ok\" : \"error\",\n      });\n      await telemetry.flush().catch(() => {});\n    }\n  } finally {\n    disposeLogStore();\n  }\n}\n\n/**\n * Resume an existing session from the CLI.\n *\n * With the Phase 2 turn-based model, flow state is NOT persisted to\n * local session files — only the harness session ID is kept. The CLI\n * can resume the agent's conversation thread, but the flow execution\n * itself starts from scratch because the runner has no durable store\n * for per-run state.\n *\n * For a governed, resumable flow run, use a host that persists flow\n * state (e.g. the Skaile platform). CLI resume is retained as a\n * harness-level convenience only: we load the session, restart the\n * flow, and the SDK will reconnect to the prior conversation thread.\n *\n * @docLink packages/factory-assets/flow#resume-flow\n */\nexport async function resumeFlow(opts: ResumeOptions): Promise<void> {\n  const runner = await loadRunnerModule();\n  const { loadSession, loadSessionById, bootstrapRunnerLogStore } = runner;\n\n  const session = opts.sessionId\n    ? await loadSessionById(opts.projectDir, opts.sessionId)\n    : await loadSession(opts.projectDir);\n\n  if (!session) {\n    const hint = opts.sessionId\n      ? `session ${opts.sessionId}`\n      : `current session in ${opts.projectDir}/.skaile`;\n    throw new Error(`No session found (${hint}) — run 'start' first`);\n  }\n\n  const flowPath = resolveFlowPath(session.flowId, opts.projectDir);\n\n  // Bootstrap a transient logger for the resume diagnostics. The inner\n  // runFlow() call will register its own LogStore for the new run. Keep\n  // OnLogBridgeSink wiring so callers passing onLog still see this line.\n  const wsConfigEarly = resolveSkWorkspaceConfig(opts.projectDir);\n  const { dispose: disposeLogStore } = bootstrapRunnerLogStore({\n    sessionId: session.runId,\n    projectDir: opts.projectDir,\n    yamlBlock: wsConfigEarly.logging,\n    onLog: opts.onLog,\n    stdout: opts.onLog === undefined,\n  });\n  const flowLog = createLogger({\n    kind: \"flow-connector\",\n    subkind: \"run\",\n    instance: session.runId,\n  });\n  flowLog.info(\"resuming session\", {\n    runId: session.runId,\n    flowId: session.flowId,\n    note: \"CLI mode does not persist flow state — flow restarts from scratch; harness thread resumes\",\n  });\n\n  try {\n    await runFlow({\n      projectDir: opts.projectDir,\n      flowPath,\n      agentDir: opts.agentDir ?? session.agentDir,\n      harness: session.harness,\n      model: session.model,\n      sessionLabel: session.label,\n      resumeSession: session,\n      dryRun: opts.dryRun,\n      sessionTimeoutMs: opts.sessionTimeoutMs,\n      onEvent: opts.onEvent,\n      onLog: opts.onLog,\n    });\n  } finally {\n    disposeLogStore();\n  }\n}\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\nasync function validatePinnedVersions(\n  flow: Awaited<ReturnType<typeof loadFlow>>,\n  projectDir: string,\n  log: (line: string) => void,\n): Promise<void> {\n  const pinnedNodes = flowSkillVersionPins(flow);\n  if (pinnedNodes.length === 0) return;\n\n  const skillVersions = new Map<string, string>();\n  const aiResourcesDir = findAiResourcesDir(projectDir);\n  if (aiResourcesDir) {\n    for (const node of pinnedNodes) {\n      const skillId = node.skillId;\n      if (skillVersions.has(skillId)) continue;\n      const skillPath = findSkillMd(aiResourcesDir, skillId);\n      if (skillPath) {\n        const content = fs.readFileSync(skillPath, \"utf-8\");\n        const fm = parseSkillFrontmatter(content);\n        skillVersions.set(skillId, fm.metadata?.version ?? fm.version ?? \"\");\n      }\n    }\n  }\n\n  const checks = validateFlowVersions(pinnedNodes, skillVersions);\n  const failures = checks.filter((c) => !c.satisfied);\n  if (failures.length > 0) {\n    const lines = failures.map(\n      (f) => `  ${f.nodeId}: wants ${f.requested}, found ${f.actual || \"(none)\"}`,\n    );\n    throw new Error(`Skill version mismatch:\\n${lines.join(\"\\n\")}`);\n  }\n  for (const c of checks.filter((c) => c.satisfied)) {\n    log(`  Version OK: ${c.skillId} ${c.actual} satisfies ${c.requested}`);\n  }\n}\n\n/**\n * Assert `found` sits inside one of `roots`.\n *\n * A backstop, not the primary control: `isValidAssetName` already rejects every\n * id containing a separator, and `findFlowFileInRoots` skips any candidate that\n * escapes its search dir. So on today's code this cannot fire — it is here to\n * fail loudly rather than silently if a future lookup stops enforcing\n * containment itself. Widening the accepted extensions must never widen which\n * paths are reachable, and this is the line that keeps that honest.\n */\nfunction assertContainedInAnyRoot(found: string, roots: string[], flowId: string): void {\n  const resolved = path.resolve(found);\n  const inside = roots.some((root) => {\n    const relative = path.relative(path.resolve(root), resolved);\n    return !relative.startsWith(\"..\") && !path.isAbsolute(relative);\n  });\n  if (!inside) {\n    throw new Error(`Flow path escapes its lookup root: ${JSON.stringify(flowId)}`);\n  }\n}\n\n/** One line per near-miss: a file that is right there but was still rejected. */\nfunction describeMisses(misses: FlowLookupMiss[], heading: string): string {\n  const seen = new Set<string>();\n  const lines: string[] = [];\n  for (const miss of misses) {\n    if (seen.has(miss.path)) continue;\n    seen.add(miss.path);\n    lines.push(\n      miss.reason === \"id-mismatch\"\n        ? `  ${miss.path}: declares id ${JSON.stringify(miss.declaredId ?? \"\")}`\n        : `  ${miss.path}: could not be parsed (${miss.error ?? \"unknown error\"})`,\n    );\n  }\n  return lines.length > 0 ? `\\n${heading}\\n${lines.join(\"\\n\")}` : \"\";\n}\n\n/**\n * Resolve one flow identity through the CLI/serve host's normal lookup order —\n * the same roots and filenames `skaile run` and `flow list` use, via\n * {@link flowLookupRoots} / {@link findFlowFileInRoots}. Resolution is by the\n * **declared** `id`, not by filename.\n *\n * @throws {Error} When `flowId` is not a canonical asset name, when no file\n *   declares it, or when a match somehow resolves outside every lookup root.\n */\nexport function resolveFlowPath(flowId: string, projectDir: string): string {\n  // Sub-flow targets and resumed session records are the two callers, so an\n  // identity that is not canonical is a bug in the caller, not a missing file.\n  if (!isValidAssetName(flowId)) {\n    throw new Error(`Invalid canonical flow identity: ${JSON.stringify(flowId)}`);\n  }\n\n  const roots = flowLookupRoots(projectDir);\n  const misses: FlowLookupMiss[] = [];\n  const found = findFlowFileInRoots(flowId, roots, { onMiss: (m) => misses.push(m) });\n  if (found) {\n    assertContainedInAnyRoot(found, roots, flowId);\n    return found;\n  }\n\n  // A file that is present but unparseable is a different problem from a missing\n  // one, and \"not found\" is the wrong headline for it — that exact misdirection\n  // is what this change exists to remove, so don't reintroduce it here.\n  if (misses.length > 0 && misses.every((m) => m.reason === \"unparseable\")) {\n    throw new Error(\n      `Flow ${flowId} was found but could not be loaded.` + describeMisses(misses, \"Candidates:\"),\n    );\n  }\n\n  const shown = roots.slice(0, 3).join(\", \");\n  const more = roots.length > 3 ? \", …\" : \"\";\n  // Spelled from FLOW_FILE_EXTENSIONS so the message cannot drift from the\n  // candidate list the lookup actually probes.\n  const accepted = FLOW_FILE_EXTENSIONS.map((ext) => `${flowId}${ext}`).join(\" | \");\n  throw new Error(\n    `Flow not found: ${flowId}. Searched ${roots.length} root(s) (${shown || \"none\"}${more}) ` +\n      `for ${accepted} — flat, or inside a ${flowId}/ directory. ` +\n      `Only the flows of this project are found: run \\`skaile add flow:@<publisher>/<name>\\` first for a flow that lives in a library or source.` +\n      describeMisses(misses, \"Near misses:\"),\n  );\n}\n\n/** Walk up from projectDir to find ai-assets/ */\nfunction findAiResourcesDir(projectDir: string): string | null {\n  let dir = projectDir;\n  for (let i = 0; i < 6; i++) {\n    const candidate = path.join(dir, \"ai-assets\");\n    if (fs.existsSync(candidate)) return candidate;\n    const parent = path.dirname(dir);\n    if (parent === dir) break;\n    dir = parent;\n  }\n  return null;\n}\n\n/** Find SKILL.md for a given skill ID in any `skills/` directory under ai-assets */\nfunction findSkillMd(aiResourcesDir: string, skillId: string): string | null {\n  for (const skillsDir of findKindDirs(aiResourcesDir, \"skills\")) {\n    const found = walkForSkill(skillsDir, skillId);\n    if (found) return found;\n  }\n  return null;\n}\n\n// ---------------------------------------------------------------------------\n// Turn-wait helper\n// ---------------------------------------------------------------------------\n\n/**\n * Minimal harness surface needed by the bus's `driveTurn` callback. Mirrors\n * the slice the legacy `FlowOrchestrator` consumed (`prompt` + `on` +\n * `removeAllListeners`) so we can keep the wait helper private to this\n * module without pulling in a runtime dep on `@skaile/workspaces/bridge`.\n */\ninterface TurnHarnessSurface {\n  prompt(message: string): Promise<void>;\n  on(event: \"agent-event\", handler: (event: AgentEvent) => void): void;\n  removeAllListeners(event: \"agent-event\"): void;\n}\n\n/**\n * Send a prompt to the harness and resolve when the agent emits\n * `agent_end` (or reject on an `error` that is not an in-place retry).\n * Identical contract to the legacy `awaitAgentEnd` helper from\n * `flow-orchestrator.ts`. Phase 4 lifts the helper into `run-flow.ts` because\n * the bus now owns turn driving. Exported for tests only.\n */\nexport function awaitAgentEnd(\n  harness: TurnHarnessSurface,\n  prompt: string,\n  onEvent: ((event: AgentEvent) => void) | undefined,\n  timeoutMs: number,\n): Promise<void> {\n  return new Promise<void>((resolve, reject) => {\n    let settled = false;\n\n    const done = (err?: Error) => {\n      if (settled) return;\n      settled = true;\n      clearTimeout(timer);\n      harness.removeAllListeners(\"agent-event\");\n      if (err) reject(err);\n      else resolve();\n    };\n\n    const timer = setTimeout(\n      () => done(new Error(`Flow turn timed out after ${timeoutMs / 1000}s`)),\n      timeoutMs,\n    );\n\n    harness.on(\"agent-event\", (event: AgentEvent) => {\n      onEvent?.(event);\n      if (event.type === \"agent_end\") done();\n      // An in-place retry replays this same turn; its own end settles it.\n      else if (event.type === \"error\" && event.retrying !== true) {\n        const msg =\n          (event as { error?: string; message?: string }).error ??\n          (event as { message?: string }).message ??\n          \"Agent error\";\n        done(new Error(msg));\n      }\n    });\n\n    harness.prompt(prompt).catch(done);\n  });\n}\n\nfunction walkForSkill(dir: string, skillId: string): string | null {\n  for (const entry of fs.readdirSync(dir, { withFileTypes: true })) {\n    if (!entry.isDirectory()) continue;\n    const full = path.join(dir, entry.name);\n    const skillMd = path.join(full, \"SKILL.md\");\n    if (fs.existsSync(skillMd)) {\n      if (entry.name === skillId) return skillMd;\n    } else {\n      const found = walkForSkill(full, skillId);\n      if (found) return found;\n    }\n  }\n  return null;\n}\n"]}

package/dist/{chunk-2TLPC6TQ.js → chunk-YHNPWSSH.js}

@@ -1,12 +1,12 @@
-import { agentInstanceWarningLines, agentInstanceErrorLines, reportUnknownHarnesses, reportProjectConfig } from './chunk-XD3RYAMR.js';
+import { agentInstanceWarningLines, agentInstanceErrorLines, reportUnknownHarnesses, reportProjectConfig } from './chunk-PMZMG3HC.js';
 import { createSpinner } from './chunk-NESV47MF.js';
-import { getKindRegistry } from './chunk-RAU5QPI6.js';
-import { logInfo, logWarn, S, logErr, TARGET_DEFAULT_HINT, logOk, colorRef, parseHarnessFilter, requireProjectConfig, deferredWarnings, warnPlaceholderBodies, warnFilesOnlyDelegates, warnStaleHarnessCopies, formatSoftDepHint, reportLegacyOmpCopies } from './chunk-SCRYXAHH.js';
-import { loadAgentManifest, createCompositionContentSource, hashAgentFiles, isCompilePinCurrent, compileComposition, CompositionError, loadCompileManifestFromDir, verifyConventionItems, resolveAgentInstance, isCompositionError, resolveBinding } from './chunk-AQNW2FET.js';
-import { AssetManager } from './chunk-JRVQV7WC.js';
+import { getKindRegistry } from './chunk-QCR5AE5E.js';
+import { logInfo, logWarn, S, logErr, TARGET_DEFAULT_HINT, logOk, colorRef, parseHarnessFilter, requireProjectConfig, deferredWarnings, warnPlaceholderBodies, warnFilesOnlyDelegates, warnStaleHarnessCopies, formatSoftDepHint, reportLegacyOmpCopies } from './chunk-3NJFPGEB.js';
+import { loadAgentManifest, createCompositionContentSource, hashAgentFiles, isCompilePinCurrent, compileComposition, CompositionError, loadCompileManifestFromDir, verifyConventionItems, resolveAgentInstance, isCompositionError, resolveBinding } from './chunk-K7ZGY2BY.js';
+import { AssetManager } from './chunk-757G6TTZ.js';
 import { effectiveComposes } from './chunk-VT6G5AJV.js';
-import { readLock } from './chunk-6ARPZHOV.js';
-import { agentSourceCacheDir, SourceEntryError, effectiveAgentInstances, resolveSkWorkspaceConfig, resolveAgentDefinitionDir, AgentRefResolutionError } from './chunk-6SXSVKQY.js';
+import { readLock } from './chunk-TMJBEGS4.js';
+import { agentSourceCacheDir, SourceEntryError, effectiveAgentInstances, resolveSkWorkspaceConfig, resolveAgentDefinitionDir, AgentRefResolutionError } from './chunk-O7ADRMCR.js';
 import { userConfigPath, globalSkaileDir } from './chunk-L5VSIPQD.js';
 import { parseAssetRef } from './chunk-V5KG6CCV.js';
 import { homedir } from 'os';
@@ -22,8 +22,8 @@ function needsPin(composes) {
     return false;
   }
 }
-async function pinComposedAgents(projectDir) {
-  return (await pinComposedAgentsReport(projectDir)).pinned;
+async function pinComposedAgents(projectDir, opts = {}) {
+  return (await pinComposedAgentsReport(projectDir, opts)).pinned;
 }
 function missingLine(err, agentName) {
   if (err.moved) {
@@ -32,7 +32,7 @@ function missingLine(err, agentName) {
   }
   return `${err.ref ?? agentName} (agent ${agentName}: ${err.message})`;
 }
-async function pinComposedAgentsReport(projectDir) {
+async function pinComposedAgentsReport(projectDir, opts = {}) {
   const cacheDir = agentSourceCacheDir(projectDir);
   const pinned = [];
   const missing = [];
@@ -41,7 +41,10 @@ async function pinComposedAgentsReport(projectDir) {
     if (!entry.isDirectory()) continue;
     const agentDir = path2.join(cacheDir, entry.name);
     const manifest = await loadAgentManifest(agentDir);
-    if (!manifest?.composes?.length || !needsPin(manifest.composes)) continue;
+    if (!manifest) continue;
+    const wanted = !!manifest.composes?.length && needsPin(manifest.composes);
+    if (!wanted && !(opts.repin && await hasCompilePin(agentDir))) continue;
+    const composes = manifest.composes ?? [];
     let items = [];
     const source = createCompositionContentSource({
       agentDir,
@@ -51,7 +54,7 @@ async function pinComposedAgentsReport(projectDir) {
     try {
       const files = await hashAgentFiles(agentDir);
       items = effectiveComposes(
-        manifest.composes,
+        composes,
         files.map((f) => f.path)
       );
       if (await isCompilePinCurrent({ agentDir, items, source })) continue;
@@ -188,6 +191,18 @@ function reportStoreNotChecked(notChecked) {
   }
   return unreachable;
 }
+function reportStoreNotCheckedForUpdates(notChecked) {
+  let unreachable = false;
+  for (const n of notChecked) {
+    if (n.reason === "air-gapped") {
+      logInfo(`${n.ref} not checked (air-gapped: the store was not asked)`);
+    } else {
+      unreachable = true;
+      logErr(`store unreachable: ${n.ref} not checked (${n.detail})`);
+    }
+  }
+  return unreachable;
+}
 function makeInstallCommand() {
   return new Command("install").description(`Install dependencies from skaile.yaml, or a single asset by ref (${REF_HINT})`).argument("[ref]", `Asset ref to install from the Catalog (${REF_HINT})`).option("--locked", "Install from lock file (CI mode \u2014 fails on drift)").option("--project-dir <path>", "Project directory", process.cwd()).option("--target <agent>", `Agent framework (${TARGET_DEFAULT_HINT})`).option(
     "--global",
@@ -227,7 +242,7 @@ async function runRefInstall(ref, opts) {
   const spinner = createSpinner();
   spinner.start(`Installing ${ref}`);
   try {
-    const { openCatalogSource, openLibrary } = await import('./open-library-OJ4HT2X4.js');
+    const { openCatalogSource, openLibrary } = await import('./open-library-F56D46K7.js');
     const catalog = await openCatalogSource({ projectDir: path2.resolve(opts.projectDir) });
     if (!supportsInstallManifest(catalog)) {
       throw new Error(
@@ -281,7 +296,7 @@ async function runYamlInstall(opts) {
   }
   if (await reportUnknownHarnesses(projectDir) > 0) process.exit(1);
   try {
-    const { ensureSourcesCloned } = await import('./ensure-sources-CAMWJTMR.js');
+    const { ensureSourcesCloned } = await import('./ensure-sources-VLJ7AUUK.js');
     const hydrate = ensureSourcesCloned(projectDir, { quiet: true });
     if (hydrate.cloned.length > 0) {
       logOk(`Cloned source(s): ${hydrate.cloned.join(", ")}`);
@@ -469,15 +484,22 @@ function makeCheckCommand() {
     const notices = [
       ...(await am.mcpNotices()).map((n) => n.text),
       // A library that went back past the lock is no drift either (p1257).
-      ...await am.libraryOlderNotices()
+      ...await am.libraryOlderNotices(),
+      // A lock written before it listed the instance files: the next write replaces them.
+      ...am.legacyLockNotices()
     ];
-    if (gaps.length === 0 && edited.length === 0 && configErrors === 0) {
+    await am.probeStoreOrigins();
+    const notChecked = am.takeStoreNotChecked();
+    const storeUnreachable = notChecked.some((n) => n.reason === "unreachable");
+    if (gaps.length === 0 && edited.length === 0 && configErrors === 0 && !storeUnreachable) {
       logOk("All dependencies satisfied.");
       for (const n of notices) logWarn(n);
+      reportStoreNotCheckedForUpdates(notChecked);
     } else {
       for (const g of gaps) logErr(g.message);
       for (const e of edited) logErr(e);
       for (const n of notices) logWarn(n);
+      reportStoreNotCheckedForUpdates(notChecked);
       process.exit(1);
     }
   });
@@ -595,6 +617,6 @@ function makeCleanCommand() {
   });
 }
 
-export { REF_HINT, editedConventionFiles, globalProblems, makeCheckCommand, makeCleanCommand, makeInstallCommand, pinComposedAgents, reportAgentInstances, reportContentHeld, reportInferredHarnesses, reportInstalledSoftDeps, reportMoved, reportPresetExpansions, reportRelocked, reportReplaced, reportRewritten, reportStoreNotChecked, runPointerOnlyInstall, runYamlInstall, supportsInstallManifest };
-//# sourceMappingURL=chunk-2TLPC6TQ.js.map
-//# sourceMappingURL=chunk-2TLPC6TQ.js.map
+export { REF_HINT, editedConventionFiles, globalProblems, makeCheckCommand, makeCleanCommand, makeInstallCommand, pinComposedAgents, reportAgentInstances, reportContentHeld, reportInferredHarnesses, reportInstalledSoftDeps, reportMoved, reportPresetExpansions, reportRelocked, reportReplaced, reportRewritten, reportStoreNotChecked, reportStoreNotCheckedForUpdates, runPointerOnlyInstall, runYamlInstall, supportsInstallManifest };
+//# sourceMappingURL=chunk-YHNPWSSH.js.map
+//# sourceMappingURL=chunk-YHNPWSSH.js.map

package/dist/chunk-YHNPWSSH.js.map

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* The compile pin of the agents `skaile add` keeps under `.skaile/cache/agents/<name>/`.\n *\n * An agent that composes an `inline-snapshot` item (a persona, a ruleset, …) runs from\n * `compile_manifest.json`, so it cannot run without one. `add`, `install` and `update` pin\n * such an agent themselves, once per lock revision: a pin that still matches the bytes the\n * lock serves (one `skaile rebuild` wrote, or an earlier add/install) is left alone, and\n * `skaile rebuild` only refreshes it. `update` also re-runs the rebuild for any\n * agent that holds a pin, a convention-only agent (SOUL.md) included, because the update\n * moved the bytes the pin hashes.\n */\n\nimport { existsSync, readdirSync } from \"node:fs\";\nimport path from \"node:path\";\nimport { agentSourceCacheDir } from \"@skaile/workspaces/core\";\nimport {\n  CompositionError,\n  type CompositionContentSource,\n  compileComposition,\n  createCompositionContentSource,\n  hashAgentFiles,\n  isCompilePinCurrent,\n  loadAgentManifest,\n  loadCompileManifestFromDir,\n  resolveBinding,\n} from \"@skaile/workspaces/runner\";\nimport { type AgentComposeItem, effectiveComposes } from \"@skaile/workspaces/types/manifests\";\nimport { logInfo, logWarn } from \"./helpers.ts\";\nimport { getKindRegistry } from \"./open-registry.ts\";\n\n/**\n * Whether `run` cannot start the agent without a compile pin: it declares an `inline-snapshot`\n * item (a persona, a ruleset bound so, ...). The convention files and the other bindings read\n * their source when no pin exists, so such an agent is left unpinned until `skaile rebuild`.\n */\nfunction needsPin(composes: readonly AgentComposeItem[]): boolean {\n  try {\n    return composes.some((item) => resolveBinding(item) === \"inline-snapshot\");\n  } catch {\n    // An item of a kind that has no binding: `run` and `rebuild` name it; nothing to pin here.\n    return false;\n  }\n}\n\n/**\n * Compile every cached agent of the project that declares an `inline-snapshot` composition item\n * and has no current pin. A compile that fails (an item no library or lock serves) is a warning\n * here: `skaile check` and `skaile run` raise the same error for the agent.\n *\n * @returns The names of the agents that were compiled.\n */\nexport async function pinComposedAgents(\n  projectDir: string,\n  opts: { repin?: boolean } = {},\n): Promise<string[]> {\n  return (await pinComposedAgentsReport(projectDir, opts)).pinned;\n}\n\n/**\n * The `Missing:` line `install` prints for a composed asset the lock pins but no copy serves:\n * the same words as for a locked skill the library moved past (p1510).\n */\nfunction missingLine(err: CompositionError, agentName: string): string {\n  if (err.moved) {\n    const m = err.moved;\n    return `${m.key} (library \"${m.library}\" is at ${m.libraryVersion}, locked ${m.lockedVersion}; \\`skaile update\\` moves the lock to it)`;\n  }\n  return `${err.ref ?? agentName} (agent ${agentName}: ${err.message})`;\n}\n\n/**\n * {@link pinComposedAgents}, plus the agents `run` could not start. An agent with no usable pin\n * whose locked persona or ruleset no library copy serves any more (the library moved on, or the\n * project is a fresh clone) is a `missing` line, not a warning: `install` exits 1 for it and\n * names `skaile update`, the only command that moves the lock (p1510). An agent that still has\n * its pin keeps running from it, so a library bump alone is silent.\n */\nexport async function pinComposedAgentsReport(\n  projectDir: string,\n  opts: { repin?: boolean } = {},\n): Promise<{ pinned: string[]; missing: string[] }> {\n  const cacheDir = agentSourceCacheDir(projectDir);\n  const pinned: string[] = [];\n  const missing: string[] = [];\n  if (!existsSync(cacheDir)) return { pinned, missing };\n  for (const entry of readdirSync(cacheDir, { withFileTypes: true })) {\n    if (!entry.isDirectory()) continue;\n    const agentDir = path.join(cacheDir, entry.name);\n    const manifest = await loadAgentManifest(agentDir);\n    if (!manifest) continue;\n    const wanted = !!manifest.composes?.length && needsPin(manifest.composes);\n    // `update` re-runs the rebuild for an agent that was pinned: the pin hashes bytes it moved.\n    if (!wanted && !(opts.repin && (await hasCompilePin(agentDir)))) continue;\n    const composes = manifest.composes ?? [];\n    let items: AgentComposeItem[] = [];\n    const source = createCompositionContentSource({\n      agentDir,\n      projectDir,\n      registry: getKindRegistry(),\n    });\n    try {\n      const files = await hashAgentFiles(agentDir);\n      items = effectiveComposes(\n        composes,\n        files.map((f) => f.path),\n      );\n      if (await isCompilePinCurrent({ agentDir, items, source })) continue;\n      const result = await compileComposition({ agentDir, items, source });\n      pinned.push(entry.name);\n      logInfo(\n        `Compiled agent ${manifest.name ?? entry.name} (${result.resolvedCount} composition items) → prompt v${result.manifest.prompt_version}`,\n      );\n    } catch (err) {\n      if (err instanceof CompositionError && err.code === \"composition_asset_missing\") {\n        // The bytes the lock pins are gone, but the pin that was compiled from them still\n        // serves `run`: nothing for install to report.\n        if (await hasCompilePin(agentDir)) continue;\n        for (const line of await missingLines(items, source, err, entry.name)) {\n          if (!missing.includes(line)) missing.push(line);\n        }\n        continue;\n      }\n      const reason = err instanceof Error ? err.message : String(err);\n      const code = err && typeof err === \"object\" && \"code\" in err ? `${String(err.code)}: ` : \"\";\n      logWarn(`Could not compile agent ${entry.name}: ${code}${reason}`);\n    }\n  }\n  return { pinned, missing };\n}\n\n/** Whether the agent folder holds a readable compile pin. */\nasync function hasCompilePin(agentDir: string): Promise<boolean> {\n  try {\n    return (await loadCompileManifestFromDir(agentDir)) !== undefined;\n  } catch {\n    return false;\n  }\n}\n\n/** One line per item the source cannot serve (the compile names only the first). */\nasync function missingLines(\n  items: readonly AgentComposeItem[],\n  source: CompositionContentSource,\n  first: CompositionError,\n  agentName: string,\n): Promise<string[]> {\n  const lines = [missingLine(first, agentName)];\n  for (const item of items) {\n    try {\n      await source.load(item.ref, item.kind);\n    } catch (err) {\n      if (err instanceof CompositionError && err.code === \"composition_asset_missing\") {\n        lines.push(missingLine(err, agentName));\n      }\n    }\n  }\n  return [...new Set(lines)];\n}\n","import { homedir } from \"node:os\";\nimport path from \"node:path\";\nimport * as p from \"@clack/prompts\";\nimport {\n  AssetManager,\n  type ContentHeld,\n  type InstalledAgentInstance,\n  type LibraryMove,\n  type ReplacedAsset,\n  type RewrittenAgent,\n} from \"@skaile/workspaces/asset-manager\";\nimport {\n  type AgentInstanceConfig,\n  AgentRefResolutionError,\n  type HarnessName,\n  effectiveAgentInstances,\n  globalSkaileDir,\n  type PresetExpansion,\n  parseAssetRef,\n  readLock,\n  resolveAgentDefinitionDir,\n  resolveSkWorkspaceConfig,\n  SourceEntryError,\n  userConfigPath,\n} from \"@skaile/workspaces/core\";\nimport {\n  isCompositionError,\n  loadAgentManifest,\n  resolveAgentInstance,\n  verifyConventionItems,\n} from \"@skaile/workspaces/runner\";\nimport type { InstallManifest } from \"@skaile/workspaces/types\";\nimport { Command } from \"commander\";\nimport {\n  colorRef,\n  requireProjectConfig,\n  formatSoftDepHint,\n  deferredWarnings,\n  logErr,\n  logInfo,\n  logOk,\n  logWarn,\n  parseHarnessFilter,\n  reportLegacyOmpCopies,\n  S,\n  TARGET_DEFAULT_HINT,\n  warnFilesOnlyDelegates,\n  warnStaleHarnessCopies,\n  warnPlaceholderBodies,\n} from \"../helpers.ts\";\nimport {\n  agentInstanceErrorLines,\n  agentInstanceWarningLines,\n  reportProjectConfig,\n  reportUnknownHarnesses,\n} from \"../config-checks.ts\";\nimport { createSpinner } from \"../spinner.ts\";\nimport { getKindRegistry } from \"../open-registry.ts\";\nimport { pinComposedAgentsReport } from \"../agent-pins.ts\";\n\n/**\n * Canonical asset-ref shape accepted by `skaile install <ref>`:\n * `kind:@<publisher>/<name>#<version>` (the `#` version sigil). Validated via\n * `parseAssetRef` so the CLI shares the single canonical grammar; the legacy\n * trailing-`@version` shape is rejected.\n */\nexport const REF_HINT = \"kind:@<publisher>/<name>#<version> (e.g. skill:@skaile-ai/use-exa#1.0.0)\";\n\n/** True when `ref` parses as a canonical asset ref. */\nfunction isValidAssetRef(ref: string): boolean {\n  try {\n    parseAssetRef(ref);\n    return true;\n  } catch {\n    return false;\n  }\n}\n\n/**\n * Minimal catalog-source surface the pointer-only install path needs.\n * `RemoteCatalogSource` satisfies this — narrowing keeps {@link runPointerOnlyInstall}\n * testable with a hand-rolled stub.\n */\nexport interface InstallManifestSource {\n  getInstallManifest(ref: string): Promise<InstallManifest>;\n}\n\n/**\n * Capability check: is this catalog source able to serve install manifests?\n *\n * `openCatalogSource` returns a `RemoteCatalogSource | RestCatalogSource`.\n * Only the tRPC-framed `RemoteCatalogSource` implements `getInstallManifest`;\n * the REST-framed `RestCatalogSource` (the default for any catalog URL other\n * than `https://skaile.store`) does not. Calling it unconditionally would be a\n * runtime `TypeError`, so the pointer-only install path must capability-detect\n * first and fail with a clear, actionable message.\n */\nexport function supportsInstallManifest(source: unknown): source is InstallManifestSource {\n  return (\n    typeof (source as { getInstallManifest?: unknown } | null | undefined)?.getInstallManifest ===\n    \"function\"\n  );\n}\n\n/**\n * Minimal library surface the pointer-only install path needs.\n * `LocalIndex` satisfies this.\n */\nexport interface InstallLibrary {\n  install(manifest: InstallManifest): Promise<{ installPath: string }>;\n}\n\n/**\n * Result of a pointer-only catalog install.\n */\nexport interface PointerOnlyInstallResult {\n  /** Absolute path the verified asset bytes were written to. */\n  installPath: string;\n  /** The pinned upstream commit SHA the asset was fetched at. */\n  commitSha: string;\n  /** Number of files in the install manifest. */\n  fileCount: number;\n}\n\n/**\n * Pointer-only catalog install — the `skaile install <ref>` code path.\n *\n * 1. Resolves the pointer-only {@link InstallManifest} from the Catalog.\n * 2. Hands it to the library, which fetches each file's bytes directly from\n *    the upstream repo at the pinned commit, verifies every per-file SHA256\n *    plus the composite SHA256, and only then writes the verified files.\n *\n * Both dependencies are injected so the function is unit-testable without a\n * network round-trip. In production the CLI passes a `RemoteCatalogSource`\n * and a `LocalIndex`.\n *\n * @param ref - Canonical asset ref (`kind:@<publisher>/<name>#<version>`).\n * @param deps - Injected catalog source + library.\n * @returns The install path, pinned commit SHA, and file count.\n * @throws When the ref is malformed, the manifest cannot be resolved, or any\n *   hash verification fails. The underlying error message is surfaced as-is.\n */\nexport async function runPointerOnlyInstall(\n  ref: string,\n  deps: { catalog: InstallManifestSource; library: InstallLibrary },\n): Promise<PointerOnlyInstallResult> {\n  let requested: ReturnType<typeof parseAssetRef>;\n  try {\n    requested = parseAssetRef(ref);\n  } catch (e) {\n    throw new Error(\n      `malformed asset ref '${ref}' — expected ${REF_HINT}: ${e instanceof Error ? e.message : String(e)}`,\n    );\n  }\n  const manifest = await deps.catalog.getInstallManifest(ref);\n  // [M1] Identity check: the catalog must not install a different asset than\n  // requested. Compare the PARSED refs (kind/publisher/name/pin) so equivalent\n  // spellings (optional `kind:`, default `skill`) are treated as the same ref.\n  const got = parseAssetRef(manifest.ref);\n  if (\n    got.kind !== requested.kind ||\n    got.publisher !== requested.publisher ||\n    got.name !== requested.name ||\n    got.pin !== requested.pin\n  ) {\n    throw new Error(\n      `catalog identity mismatch: requested '${ref}' but the catalog returned a manifest for '${manifest.ref}'`,\n    );\n  }\n  const { installPath } = await deps.library.install(manifest);\n  return {\n    installPath,\n    commitSha: manifest.source.commitSha,\n    fileCount: manifest.files.length,\n  };\n}\n\n/**\n * Print one summary line per `preset:` dependency `skaile install` expanded: how many\n * asset items joined the install set and how many instance items (`library://`,\n * placeholders) were skipped, which only `skaile preset apply` materialises.\n */\nexport function reportPresetExpansions(\n  presets: readonly PresetExpansion[] | undefined,\n  onLine: (line: string) => void = logInfo,\n): void {\n  for (const preset of presets ?? []) {\n    onLine(\n      `preset ${preset.ref}: ${preset.assets} assets, ${preset.skipped} instance items skipped (apply with skaile preset apply)`,\n    );\n  }\n}\n\n/**\n * Print one line per agent instance `skaile install` rendered (with the files\n * written) and one per native agent file removed because its instance left `skaile.yaml`.\n */\nexport function reportAgentInstances(\n  instances: readonly InstalledAgentInstance[] | undefined,\n  removedFiles: readonly string[] | undefined,\n  onLine: (line: string) => void = logInfo,\n  onRemoved: (line: string) => void = logWarn,\n): void {\n  for (const instance of instances ?? []) {\n    onLine(`agent ${instance.id}: ${instance.files.join(\", \")}`);\n  }\n  for (const file of removedFiles ?? []) onRemoved(`Removed: ${file}`);\n}\n\n/** One `Re-locked` line per lock entry `install`/`update` rewrote for an already-locked asset. */\nexport function reportRelocked(\n  relocked: string[] | undefined,\n  onLine: (line: string) => void = logInfo,\n): void {\n  for (const ref of relocked ?? []) onLine(`Re-locked ${ref}`);\n}\n\n/**\n * One line per locked library asset whose library holds the locked version with other bytes.\n * `install` keeps the lock and the deployed copy; only `update` takes the edit (OQ13, p1911).\n * The project does not match its library, as `check` says, so the run exits 1.\n */\nexport function reportContentHeld(\n  held: ContentHeld[] | undefined,\n  onLine: (line: string) => void = logWarn,\n): void {\n  for (const h of held ?? []) {\n    onLine(\n      `${h.ref.split(\"#\")[0]}: library \"${h.library}\" changed since lock (same version ${h.version}). Run ${S.cmd(\"skaile update\")} to take the change.`,\n    );\n    process.exitCode = 1;\n  }\n}\n\n/** One line per global entry `install --global` limited to the one harness that holds its copy (p1442). */\nexport function reportInferredHarnesses(\n  inferred: readonly { ref: string; harnesses: readonly string[] }[] | undefined,\n  onLine: (line: string) => void = logInfo,\n): void {\n  for (const i of inferred ?? []) {\n    onLine(\n      `${i.ref} stays on ${i.harnesses.join(\", \")} (its only copy); add it to another harness with \\`skaile add ${i.ref} --global --harness <id>\\``,\n    );\n  }\n}\n\n/** One `! <ref> moved from <a> to <b>` line per locked asset that now resolves from another library. */\nexport function reportMoved(\n  moved: readonly LibraryMove[] | undefined,\n  onLine: (line: string) => void = logWarn,\n): void {\n  for (const m of moved ?? []) onLine(`${m.ref} moved from ${m.from} to ${m.to}`);\n}\n\n/** One `replaced <old> → <new>` line per asset `install`/`update` moved to another locked version. */\nexport function reportReplaced(\n  replaced: readonly ReplacedAsset[] | undefined,\n  onLine: (line: string) => void = logInfo,\n): void {\n  for (const r of replaced ?? []) onLine(`${r.ref} replaced ${r.from} → ${r.to}`);\n}\n\n/** One `Rewrote <file> (agent render changed)` line per rendered agent file whose bytes the CLI's render changed. */\nexport function reportRewritten(\n  rewritten: readonly RewrittenAgent[] | undefined,\n  onLine: (line: string) => void = logInfo,\n): void {\n  for (const r of rewritten ?? []) {\n    for (const f of r.files) onLine(`Rewrote ${f} (agent render changed)`);\n  }\n}\n\n/**\n * Say which locked store assets `install`/`update` did not check against the store (p792,\n * p799). A chosen mode (air-gapped, `--no-catalog`) is one info line per asset; a store that\n * did not answer is an error line `store unreachable: could not check <ref> for updates`.\n *\n * @returns Whether any asset could not be checked because the store was unreachable: the\n *   command then ends `Failed` with exit 1.\n */\nexport function reportStoreNotChecked(\n  notChecked: readonly { ref: string; reason: string; detail: string }[] | undefined,\n): boolean {\n  let unreachable = false;\n  for (const n of notChecked ?? []) {\n    if (n.reason === \"unreachable\") {\n      unreachable = true;\n      logErr(`store unreachable: could not check ${n.ref} for updates (${n.detail})`);\n    } else if (n.reason === \"air-gapped\") {\n      logInfo(`${n.ref} kept as locked (air-gapped: not checked against the store)`);\n    } else {\n      logInfo(`${n.ref} kept as locked (${n.detail})`);\n    }\n  }\n  return unreachable;\n}\n\n/**\n * Say which refs `outdated`, `check` or `doctor` could not check against the store\n * (`AssetManager.takeStoreNotChecked`). A store that did not answer is one error\n * line per ref (`store unreachable: <ref> not checked (<why>)`); an air-gapped client\n * (`catalog.cache_ttl: 0`) chose not to ask, so its refs are one info line each.\n *\n * @returns Whether any ref was not checked because the store was unreachable: the command then\n *   exits 1, as `install` and `update` do.\n */\nexport function reportStoreNotCheckedForUpdates(\n  notChecked: readonly { ref: string; reason: string; detail: string }[],\n): boolean {\n  let unreachable = false;\n  for (const n of notChecked) {\n    if (n.reason === \"air-gapped\") {\n      logInfo(`${n.ref} not checked (air-gapped: the store was not asked)`);\n    } else {\n      unreachable = true;\n      logErr(`store unreachable: ${n.ref} not checked (${n.detail})`);\n    }\n  }\n  return unreachable;\n}\n\n/**\n * Creates the `skaile install` command.\n *\n * Two modes, selected by argument shape:\n *\n * - `skaile install` (no positional arg) — reads `skaile.yaml` and deploys all\n *   declared assets (and their transitive dependencies) to the configured\n *   harness target directory. Supports `--locked` for CI-mode install from a\n *   lock file.\n * - `skaile install kind:@<publisher>/<name>#<version>` — pointer-only catalog\n *   install: resolves the pointer-only install manifest from the configured\n *   Catalog, fetches each file's bytes directly from the upstream repo at the\n *   pinned commit, verifies every per-file + the composite SHA256, then writes\n *   the verified files into the local Library.\n *\n * @returns Configured {@link Command} ready for `program.addCommand()`.\n * @docLink cli/commands/project#make-install-command\n */\nexport function makeInstallCommand(): Command {\n  return new Command(\"install\")\n    .description(`Install dependencies from skaile.yaml, or a single asset by ref (${REF_HINT})`)\n    .argument(\"[ref]\", `Asset ref to install from the Catalog (${REF_HINT})`)\n    .option(\"--locked\", \"Install from lock file (CI mode — fails on drift)\")\n    .option(\"--project-dir <path>\", \"Project directory\", process.cwd())\n    .option(\"--target <agent>\", `Agent framework (${TARGET_DEFAULT_HINT})`)\n    .option(\n      \"--global\",\n      \"Install the global SSOT (~/.skaile/skaile.yaml), fanning out to every global harness\",\n    )\n    .option(\n      \"--harness <ids>\",\n      \"Comma-separated global harnesses to install into (default: all resolved); implies --global\",\n    )\n    .option(\n      \"--link\",\n      \"symlink local-path assets instead of copying (dev loop; machine-local, not for committing)\",\n    )\n    .option(\n      \"--force\",\n      \"Deploy over a folder no lock entry owns (a hand-made skill of the same name), and prune an undeclared asset whose folder holds your edits, instead of refusing\",\n    )\n    .option(\n      \"--verbose\",\n      \"also print the resolver's searched directories for an agent it cannot find\",\n    )\n    .action(runInstallCommand);\n}\n\n/** Options shape accepted by the `skaile install` command action. */\nexport interface InstallCommandOptions {\n  locked?: boolean;\n  projectDir: string;\n  target?: string;\n  global?: boolean;\n  harness?: string;\n  link?: boolean;\n  force?: boolean;\n  verbose?: boolean;\n}\n\n/**\n * `skaile install` action body. Dispatches by argument shape:\n * a positional `ref` selects pointer-only catalog install, otherwise the\n * legacy `skaile.yaml` install path runs.\n */\nasync function runInstallCommand(\n  ref: string | undefined,\n  opts: InstallCommandOptions,\n): Promise<void> {\n  // ── Pointer-only catalog install: `skaile install <ref>` ──────────────\n  if (ref !== undefined) {\n    await runRefInstall(ref, opts);\n    return;\n  }\n\n  // ── Legacy install: `skaile install` reads skaile.yaml ────────────────\n  await runYamlInstall(opts);\n}\n\n/** Pointer-only catalog install path for `skaile install <ref>`. */\nasync function runRefInstall(ref: string, opts: InstallCommandOptions): Promise<void> {\n  if (!isValidAssetRef(ref)) {\n    logErr(`malformed asset ref '${ref}' — expected ${REF_HINT}`);\n    process.exit(1);\n  }\n  // The store installs one exact version; without `#<version>` it answers a bare 400, so say\n  // what is missing before the call.\n  if (!parseAssetRef(ref).pin) {\n    logErr(\n      `${ref} needs a version: use ${ref}#<version>. A library asset is deployed with \\`skaile add ${ref}\\`, not \\`skaile install\\`.`,\n    );\n    process.exit(1);\n  }\n  const spinner = createSpinner();\n  spinner.start(`Installing ${ref}`);\n  try {\n    const { openCatalogSource, openLibrary } = await import(\"../open-library.ts\");\n    const catalog = await openCatalogSource({ projectDir: path.resolve(opts.projectDir) });\n    // [H2] REST-framed catalogs (the default for any catalog URL other\n    // than https://skaile.store) cannot serve install manifests. Detect\n    // and fail clearly rather than throwing a runtime TypeError.\n    if (!supportsInstallManifest(catalog)) {\n      throw new Error(\n        \"pointer-only install (skaile install <ref>) requires a tRPC-framed Catalog. \" +\n          \"The configured catalog uses REST framing, which does not serve install \" +\n          \"manifests. Set catalog.url to https://skaile.store, or catalog.framing: trpc, \" +\n          `in ${userConfigPath()}.`,\n      );\n    }\n    const library = await openLibrary();\n    try {\n      const result = await runPointerOnlyInstall(ref, { catalog, library });\n      spinner.stop(\"Done\");\n      logOk(`Installed ${colorRef(ref)}`);\n      logInfo(`Path: ${S.dim(result.installPath)}`);\n      logInfo(`Commit: ${S.dim(result.commitSha)}`);\n      logInfo(`Files: ${S.dim(String(result.fileCount))}`);\n      logInfo(\n        S.dim(\n          `Installed globally (see Path above) — use \\`skaile add ${ref}\\` to deploy into this project.`,\n        ),\n      );\n    } finally {\n      library.close();\n    }\n  } catch (err) {\n    spinner.stop(\"Failed\");\n    const msg = err instanceof Error ? err.message : String(err);\n    if (/failed: 404\\b/.test(msg)) {\n      logErr(\n        `${ref} is not in the store. For a library asset use \\`skaile add ${ref.replace(/#.*$/, \"\")}\\`.`,\n      );\n    } else if (/unreachable/i.test(msg)) {\n      logErr(`asset uninstallable — source commit no longer available (${msg})`);\n    } else {\n      logErr(msg);\n    }\n    process.exit(1);\n  }\n}\n\n/** Legacy install path for bare `skaile install` (reads skaile.yaml). Also runs `skaile harness set`. */\nexport async function runYamlInstall(opts: InstallCommandOptions): Promise<void> {\n  const projectDir = path.resolve(opts.projectDir);\n\n  const harnesses = parseHarnessFilter(opts.harness);\n  // `--harness` implies `--global`.\n  if (opts.global || harnesses) {\n    await runGlobalInstall(opts, harnesses);\n    return;\n  }\n\n  // A project without a readable skaile.yaml stops here, before sources are cloned, assets\n  // are deployed or undeployed, or the lock is written.\n  requireProjectConfig(projectDir);\n\n  // Refuse what `validate` rejects for the `agents:` map, before anything is written (p1512);\n  // a key of `agent:` or `agents:` that nothing reads warns (p1712).\n  for (const line of agentInstanceWarningLines(projectDir)) logWarn(line);\n  const instanceErrors = agentInstanceErrorLines(projectDir);\n  if (instanceErrors.length > 0) {\n    for (const line of instanceErrors) logErr(line);\n    process.exit(1);\n  }\n  // A `harness:` nothing registers fails as in `validate` and `check` (p1754).\n  if ((await reportUnknownHarnesses(projectDir)) > 0) process.exit(1);\n\n  // Hydrate sources declared in skaile.yaml before resolving assets, so\n  // freshly checked-out projects pull their source clones automatically.\n  try {\n    const { ensureSourcesCloned } = await import(\"../ensure-sources.ts\");\n    const hydrate = ensureSourcesCloned(projectDir, { quiet: true });\n    if (hydrate.cloned.length > 0) {\n      logOk(`Cloned source(s): ${hydrate.cloned.join(\", \")}`);\n    }\n    if (hydrate.failed.length > 0) {\n      logErr(`Failed to clone source(s): ${hydrate.failed.join(\", \")}`);\n    }\n  } catch (err) {\n    logWarn(`source hydration skipped: ${err instanceof Error ? err.message : String(err)}`);\n  }\n\n  const warnings = deferredWarnings();\n  const am = new AssetManager({\n    registry: getKindRegistry(),\n    projectDir,\n    harness: opts.target as HarnessName,\n    onLibraryCollision: warnings.push,\n  });\n  const spinner = createSpinner();\n  spinner.start(opts.locked ? \"Installing from lock file\" : \"Installing dependencies\");\n  try {\n    const result = await am.install({ locked: opts.locked, link: opts.link, force: opts.force });\n    const storeUnreachable = result.storeNotChecked?.some((n) => n.reason === \"unreachable\");\n    spinner.stop(\n      result.agentInstanceErrors?.length ||\n        result.missing.length > 0 ||\n        storeUnreachable ||\n        result.contentHeld?.length\n        ? \"Failed\"\n        : \"Done\",\n    );\n    warnings.flush();\n    if (result.deployed.length > 0) {\n      for (const d of result.deployed) logOk(d);\n    }\n    warnPlaceholderBodies(result.placeholderBodies, result.placeholderDescriptions);\n    for (const r of result.restored ?? []) {\n      for (const f of r.restored) logInfo(`Restored ${f}`);\n      for (const f of r.removed) logInfo(`Removed ${f} (not part of ${r.ref})`);\n    }\n    reportRewritten(result.rewritten);\n    for (const line of result.libraryNotices ?? []) logInfo(line);\n    reportPresetExpansions(result.presets);\n    reportAgentInstances(result.agentInstances, result.agentFilesRemoved);\n    // Said when this install wrote an agent file (a fresh clone, a changed agent), not when it only\n    // restored a skill or did nothing (p1673).\n    if (\n      result.deployed.some((d) => d.startsWith(\"agent:\")) ||\n      result.replaced?.some((r) => r.ref.startsWith(\"agent:\")) ||\n      result.agentInstancesChanged?.length\n    ) {\n      warnFilesOnlyDelegates(am.projectDir, am.harness);\n    }\n    if (result.removed.length > 0) {\n      for (const r of result.removed) logWarn(`Removed: ${r}`);\n    }\n    reportReplaced(result.replaced);\n    reportRelocked(result.relocked);\n    reportMoved(result.moved);\n    reportContentHeld(result.contentHeld);\n    const pins = await pinComposedAgentsReport(projectDir);\n    const missing = [...result.missing, ...pins.missing];\n    if (\n      result.deployed.length === 0 &&\n      result.removed.length === 0 &&\n      !result.replaced?.length &&\n      missing.length === 0 &&\n      !result.storeNotChecked?.length &&\n      !result.restored?.length &&\n      !result.relocked?.length &&\n      !result.contentHeld?.length &&\n      !result.moved?.length &&\n      !result.agentInstanceErrors?.length\n    ) {\n      logInfo(\"Nothing to install (already up to date).\");\n    }\n    if (result.agentInstanceErrors?.length) {\n      if (opts.verbose) for (const d of result.agentInstanceDetails ?? []) logInfo(S.dim(d));\n      logErr(\n        `${result.agentInstanceErrors.length} agent instance(s) could not be rendered (see above)`,\n      );\n      process.exitCode = 1;\n    }\n    if (missing.length > 0) {\n      for (const m of missing) logErr(`Missing: ${m}${result.missingHints?.[m] ?? \"\"}`);\n      // Partial-miss must fail the process — CI can't otherwise distinguish a\n      // clean install from \"half the assets never resolved\".\n      process.exitCode = 1;\n    }\n    if (reportStoreNotChecked(result.storeNotChecked)) process.exitCode = 1;\n    // A ref that only resolved once the assets were installed (a catalog agent) is checked now.\n    const lateInstanceErrors = agentInstanceErrorLines(projectDir);\n    for (const line of lateInstanceErrors) logErr(line);\n    if (lateInstanceErrors.length > 0) process.exitCode = 1;\n    if (result.lockWritten) {\n      logInfo(`Lock file written: ${S.dim(\"skaile.lock.yaml\")}`);\n    }\n    warnStaleHarnessCopies(am);\n    // Report-only: surface soft deps the declared assets reference but aren't\n    // present. Never a prompt — install is a batch/CI path. Skipped under\n    // --locked: that mode is \"restore exactly\", so an `add` nudge would jar.\n    if (!opts.locked) await reportInstalledSoftDeps(am);\n  } catch (err) {\n    spinner.stop(\"Failed\");\n    logErr(err instanceof SourceEntryError ? err.message : String(err));\n    process.exit(1);\n  }\n}\n\n/**\n * Report (never prompt) the body-link soft deps that the declared assets\n * reference but that aren't in the project — the `install` counterpart to the\n * `add`-time soft-dep surface. `install` is a batch/CI path (often non-TTY), so\n * it only ever prints a hint: pulling stays an explicit `skaile add`. Best-effort\n * — `reportSoftDeps` swallows any index failure and returns `[]`.\n */\nexport async function reportInstalledSoftDeps(\n  am: Pick<AssetManager, \"listDeclared\" | \"reportSoftDeps\">,\n  onHint: (line: string) => void = (l) => logInfo(S.dim(l)),\n): Promise<void> {\n  try {\n    const declared = (await am.listDeclared()).map((d) => d.ref);\n    if (declared.length === 0) return;\n    const edges = await am.reportSoftDeps(declared);\n    for (const edge of edges) onHint(formatSoftDepHint(edge));\n  } catch {\n    // Best-effort: a soft-dep report must never fail an install that succeeded.\n  }\n}\n\n/**\n * Global cross-harness install: deploy every dep declared in the global SSOT\n * (`~/.skaile/skaile.yaml`) into each resolved global harness's dir under `~`,\n * write the global lock (`~/.skaile/skaile.lock.yaml`), then print per-harness\n * state. `harnesses` is the `--harness` filter (omit for the full resolved set).\n */\nasync function runGlobalInstall(\n  opts: InstallCommandOptions,\n  harnesses: HarnessName[] | undefined,\n): Promise<void> {\n  const am = new AssetManager({\n    registry: getKindRegistry(),\n    projectDir: path.resolve(opts.projectDir),\n    global: true,\n    harnesses,\n  });\n  const spinner = createSpinner();\n  spinner.start(\"Installing global dependencies\");\n  try {\n    const result = await am.install({ locked: opts.locked, link: opts.link, force: opts.force });\n    const storeUnreachable = result.storeNotChecked?.some((n) => n.reason === \"unreachable\");\n    spinner.stop(\n      result.missing.length > 0 || storeUnreachable || result.contentHeld?.length\n        ? \"Failed\"\n        : \"Done\",\n    );\n    if (result.deployed.length > 0) for (const d of result.deployed) logOk(d);\n    warnPlaceholderBodies(result.placeholderBodies, result.placeholderDescriptions);\n    reportPresetExpansions(result.presets);\n    if (result.removed.length > 0) for (const r of result.removed) logWarn(`Removed: ${r}`);\n    reportReplaced(result.replaced);\n    reportRelocked(result.relocked);\n    reportInferredHarnesses(result.inferredHarnesses);\n    reportMoved(result.moved);\n    reportContentHeld(result.contentHeld);\n    if (\n      result.deployed.length === 0 &&\n      result.removed.length === 0 &&\n      !result.replaced?.length &&\n      result.missing.length === 0 &&\n      !result.storeNotChecked?.length &&\n      !result.relocked?.length &&\n      !result.contentHeld?.length &&\n      !result.moved?.length\n    )\n      logInfo(\"Nothing to install (already up to date).\");\n    if (reportStoreNotChecked(result.storeNotChecked)) process.exitCode = 1;\n    if (result.missing.length > 0) {\n      for (const m of result.missing) logErr(`Missing: ${m}${result.missingHints?.[m] ?? \"\"}`);\n      process.exitCode = 1;\n    }\n    if (result.lockWritten) logInfo(`Global lock written: ${S.dim(\"~/.skaile/skaile.lock.yaml\")}`);\n    reportLegacyOmpCopies(am.takeLegacyCopiesRemoved(), am.takeLegacyCopiesKept());\n\n    // Per-harness reconciliation summary so a partial fan-out is visible.\n    const state = am.globalState({});\n    const byHarness = new Map<string, number>();\n    for (const s of state)\n      if (s.state === \"installed\") byHarness.set(s.harness, (byHarness.get(s.harness) ?? 0) + 1);\n    for (const [harness, n] of byHarness) logInfo(`${harness}: ${n} installed`);\n  } catch (err) {\n    spinner.stop(\"Failed\");\n    logErr(String(err));\n    process.exit(1);\n  }\n}\n\n/** The `--global` options of `check`, `doctor` and `clean`. */\ninterface GlobalScopeOptions {\n  global?: boolean;\n  harness?: string;\n  projectDir: string;\n}\n\n/** A manager over the user-scope SSOT (`~/.skaile`), limited to `--harness` when given. */\nfunction globalManager(opts: GlobalScopeOptions): AssetManager {\n  return new AssetManager({\n    registry: getKindRegistry(),\n    projectDir: path.resolve(opts.projectDir),\n    global: true,\n    harnesses: parseHarnessFilter(opts.harness),\n  });\n}\n\n/**\n * What is wrong with the global install: one line per declared asset a harness does not hold\n * (`list --global` calls these `declared` and `drift`), per invalid entry, and per old\n * `~/.omp/<dir>` copy a 5.12.0 install left behind. Empty when the global state is clean (p911).\n */\nexport function globalProblems(am: AssetManager): string[] {\n  const lines = new Set<string>();\n  for (const row of am.globalState({})) {\n    if (row.state === \"declared\") {\n      lines.add(\n        `${row.ref} is declared in ~/.skaile/skaile.yaml but not installed: run skaile install --global`,\n      );\n    } else if (row.state === \"drift\") {\n      lines.add(\n        `${row.ref} is missing from ${row.harness}: run skaile install --global --harness ${row.harness}`,\n      );\n    } else if (row.state === \"invalid\") {\n      lines.add(`${row.ref} in ~/.skaile/skaile.yaml is not a valid asset ref`);\n    }\n  }\n  for (const stale of am.staleLegacyOmpCopies()) {\n    lines.add(\n      `${stale.path.replace(homedir(), \"~\")} is an old omp copy of ${stale.ref} (omp reads ~/.omp/agent): run skaile install --global --harness omp, or delete it`,\n    );\n  }\n  return [...lines];\n}\n\n/**\n * Creates the `skaile check` command.\n *\n * Fails (exit 1) on every problem {@link AssetManager.projectState} reports: unmet\n * requirements of deployed assets, a declared dep that never resolved into the lock (its\n * library or source is gone, like `skaile list` showing it as `declared`) or never\n * materialized (e.g. a store-sourced `mcp-server`, #462), a locked asset whose library is\n * gone or whose deployed copy or files are missing, a locked library asset whose files\n * changed since the lock (or whose lock hash predates the shared asset hash), and an\n * `agents.<id>.ref` that binds to no agent. `doctor`, `outdated`, `diff` and\n * `install --locked` take their verdict from the same state.\n *\n * @returns Configured {@link Command} ready for `program.addCommand()`.\n * @docLink cli/commands/project#make-check-command\n */\nexport function makeCheckCommand(): Command {\n  return new Command(\"check\")\n    .description(\"Check for unmet requirements\")\n    .option(\"--project-dir <path>\", \"Project directory\", process.cwd())\n    .option(\"--global\", \"Check the global install (~/.skaile) instead of the project\")\n    .option(\"--harness <ids>\", \"With --global: only these harnesses (comma-separated)\")\n    .action(async (opts) => {\n      if (opts.global || opts.harness) {\n        const problems = globalProblems(globalManager({ ...opts, global: true }));\n        if (problems.length === 0) {\n          logOk(\"All global dependencies satisfied.\");\n          return;\n        }\n        for (const line of problems) logErr(line);\n        process.exit(1);\n      }\n      requireProjectConfig(opts.projectDir);\n      // A mistyped key warns; a `harness:` nothing registers fails like a gap (p1474, p1022).\n      const configErrors = await reportProjectConfig(path.resolve(opts.projectDir), {\n        harness: true,\n        instances: true,\n      });\n      const am = new AssetManager({\n        registry: getKindRegistry(),\n        projectDir: path.resolve(opts.projectDir),\n      });\n      const { gaps } = await am.projectState();\n      const edited = await editedConventionFiles(path.resolve(opts.projectDir));\n      // A skipped `mcp-server` or an unset required field fails nothing: a `!` line each.\n      const notices = [\n        ...(await am.mcpNotices()).map((n) => n.text),\n        // A library that went back past the lock is no drift either (p1257).\n        ...(await am.libraryOlderNotices()),\n        // A lock written before it listed the instance files: the next write replaces them.\n        ...am.legacyLockNotices(),\n      ];\n      // A store-origin ref the store could not be asked about is not \"satisfied\".\n      await am.probeStoreOrigins();\n      const notChecked = am.takeStoreNotChecked();\n      const storeUnreachable = notChecked.some((n) => n.reason === \"unreachable\");\n      if (gaps.length === 0 && edited.length === 0 && configErrors === 0 && !storeUnreachable) {\n        logOk(\"All dependencies satisfied.\");\n        for (const n of notices) logWarn(n);\n        reportStoreNotCheckedForUpdates(notChecked);\n      } else {\n        for (const g of gaps) logErr(g.message);\n        for (const e of edited) logErr(e);\n        for (const n of notices) logWarn(n);\n        reportStoreNotCheckedForUpdates(notChecked);\n        process.exit(1);\n      }\n    });\n}\n\n/**\n * One message per convention file (SOUL.md, knowledge/, …) of a bound agent that was edited\n * after `skaile rebuild` pinned it: the compile manifest, not the file, is what the agent\n * runs from, so the edit never reaches it. Also one message per bound agent that `skaile run`\n * would refuse with `composition_rebuild_required` (an `inline-snapshot` item with no compile\n * pin, or a pin that is stale or malformed), in the words `run` prints (p1310). Instances bound\n * to the same agent directory share the files, so one message names every instance that runs\n * from them. A binding that resolves to no agent is a `projectState` gap, not reported here.\n * Shared by `check` and `doctor`.\n */\nexport async function editedConventionFiles(projectDir: string): Promise<string[]> {\n  const instances = effectiveAgentInstances(resolveSkWorkspaceConfig(projectDir));\n  const byDir = new Map<string, { ref: string; ids: string[]; instance: AgentInstanceConfig }>();\n  for (const [id, instance] of Object.entries(instances)) {\n    let agentDir: string | undefined;\n    try {\n      agentDir = resolveAgentDefinitionDir(projectDir, instance.ref);\n    } catch (err) {\n      if (err instanceof AgentRefResolutionError) continue;\n      throw err;\n    }\n    if (!agentDir) continue;\n    if (path.basename(agentDir) === \"agent.yaml\") agentDir = path.dirname(agentDir);\n    const bound = byDir.get(agentDir);\n    if (bound) bound.ids.push(id);\n    else byDir.set(agentDir, { ref: instance.ref, ids: [id], instance });\n  }\n  const messages: string[] = [];\n  for (const [agentDir, { ref, ids, instance }] of byDir) {\n    const label = `${ids.length === 1 ? \"instance\" : \"instances\"} ${ids.join(\", \")}`;\n    try {\n      const drifted = await verifyConventionItems({\n        agentDir,\n        projectDir,\n        registry: getKindRegistry(),\n      });\n      for (const err of drifted) messages.push(`${ref} (${label}): ${err.message}`);\n      const manifest = await loadAgentManifest(agentDir);\n      if (manifest) {\n        await resolveAgentInstance({\n          instanceId: ids[0]!,\n          instance,\n          asset: { manifest, dir: agentDir },\n          projectDir,\n          registry: getKindRegistry(),\n          host: { nativeSubagents: true },\n          dryRun: true,\n        });\n      }\n    } catch (err) {\n      if (!isCompositionError(err)) throw err;\n      // Only the error `run` raises for a missing pin; other composition errors are not `check`'s.\n      if (err.code === \"composition_rebuild_required\") {\n        messages.push(`${ref} (${label}): ${err.code}: ${err.message}`);\n      }\n    }\n  }\n  return messages;\n}\n\n/**\n * Creates the `skaile clean` command.\n *\n * Removes all skaile-managed assets tracked in `skaile.lock.yaml` from the\n * workspace. With `--all` also removes history, patches, repos, and the lock\n * file itself. Preserves unmanaged (manually placed) assets.\n *\n * @returns Configured {@link Command} ready for `program.addCommand()`.\n * @docLink cli/commands/project#make-clean-command\n */\nexport function makeCleanCommand(): Command {\n  return new Command(\"clean\")\n    .description(\"Remove all skaile-managed assets from the workspace\")\n    .option(\"--all\", \"Full reset: also remove history, patches, repos, and lock file\")\n    .option(\"--dry-run\", \"Show what would be removed without doing it\")\n    .option(\"-y, --yes\", \"Skip confirmation prompt\")\n    .option(\"--project-dir <path>\", \"Project directory\", process.cwd())\n    .option(\"--target <agent>\", `Agent framework (${TARGET_DEFAULT_HINT})`)\n    .option(\"--global\", \"Clean the global install (~/.skaile and every global harness)\")\n    .option(\"--harness <ids>\", \"With --global: only these harnesses (comma-separated)\")\n    .action(async (opts) => {\n      const isGlobal = Boolean(opts.global || opts.harness);\n      // A skaile.yaml that does not parse stops `clean` with one `✗` line (p910).\n      if (!isGlobal) requireProjectConfig(opts.projectDir, { allowMissing: true });\n      const am = isGlobal\n        ? globalManager({ ...opts, global: true })\n        : new AssetManager({\n            registry: getKindRegistry(),\n            projectDir: path.resolve(opts.projectDir),\n            harness: opts.target as HarnessName,\n          });\n\n      // Preview: load lock file to show what will be cleaned\n      const lock = readLock(\n        isGlobal\n          ? path.join(globalSkaileDir(), \"skaile.lock.yaml\")\n          : path.resolve(opts.projectDir, \"skaile.lock.yaml\"),\n      );\n\n      if (!lock || Object.keys(lock.assets).length === 0) {\n        logInfo(\"Nothing to clean (no skaile-managed assets found).\");\n        return;\n      }\n\n      const assetRefs = Object.keys(lock.assets);\n      console.log();\n      console.log(`  ${S.heading(\"Assets to remove:\")} ${S.dim(`(${assetRefs.length})`)}`);\n      for (const ref of assetRefs) {\n        console.log(`    ${colorRef(ref)}`);\n      }\n\n      if (opts.all) {\n        console.log();\n        console.log(`  ${S.heading(\"Also removing:\")}`);\n        if (!isGlobal) {\n          console.log(`    ${S.dim(\".skaile/history.yaml\")}`);\n          console.log(`    ${S.dim(\".skaile/patches/\")}`);\n        }\n        console.log(`    ${S.dim(isGlobal ? \"~/.skaile/skaile.lock.yaml\" : \"skaile.lock.yaml\")}`);\n      }\n\n      if (opts.dryRun) {\n        console.log();\n        logInfo(\"Dry run — no changes made.\");\n        return;\n      }\n\n      if (!opts.yes) {\n        const confirm = await p.confirm({ message: \"Proceed?\" });\n        if (p.isCancel(confirm) || !confirm) {\n          logInfo(\"Cancelled.\");\n          return;\n        }\n      }\n\n      const result = am.clean({ all: opts.all });\n\n      console.log();\n      for (const r of result.removed) {\n        logOk(`Removed ${r}`);\n      }\n      for (const s of result.skipped) {\n        logWarn(`Skipped ${s.ref}: ${s.reason}`);\n      }\n      if (result.unmanaged.length > 0) {\n        console.log();\n        logInfo(`Kept ${result.unmanaged.length} unmanaged asset(s):`);\n        for (const u of result.unmanaged) {\n          console.log(`    ${S.dim(u)}`);\n        }\n      }\n      if (opts.all) {\n        console.log();\n        logOk(\"Full reset complete.\");\n      }\n    });\n}\n"]}

package/dist/{chunk-6RHWTZPT.js → chunk-YZD7DUEF.js}

@@ -1,4 +1,4 @@
-import { mcpNotRunnableReason } from './chunk-JRVQV7WC.js';
+import { mcpNotRunnableReason } from './chunk-757G6TTZ.js';
 import { fetchAssetFilesFromGitHub } from './chunk-F3D25RGM.js';
 import { isValidAssetName } from './chunk-V5KG6CCV.js';
 import { createHash } from 'crypto';
@@ -27,5 +27,5 @@ async function mcpNotRunnableHere(manifest, name, fetcher = fetchAssetFilesFromG
 }
 
 export { mcpNotRunnableHere, storeNotInstallableReason };
-//# sourceMappingURL=chunk-6RHWTZPT.js.map
-//# sourceMappingURL=chunk-6RHWTZPT.js.map
+//# sourceMappingURL=chunk-YZD7DUEF.js.map
+//# sourceMappingURL=chunk-YZD7DUEF.js.map