@skaile/workspaces 6.15.0 → 6.16.0

package/dist/chunk-4ZNKEDYH.js.map

@@ -0,0 +1 @@
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* composition/errors.ts\n *\n * Typed failures of the composition pipeline. Composition never omits an item\n * silently: a ref that cannot be served exactly as pinned ends the session\n * start (or the rebuild) with one of these.\n */\n\n/** Diagnostic code carried by a {@link CompositionError}. */\nexport type CompositionErrorCode =\n  | \"composition_asset_missing\"\n  | \"composition_conflict\"\n  | \"composition_rebuild_required\";\n\n/** Why a {@link CompositionError} was raised (stable, for tests and tooling). */\nexport type CompositionErrorReason =\n  /** No content found for the ref (nothing on disk, no lock pin bytes, no catalog hit). */\n  | \"missing\"\n  /** Several distinct catalog/lock candidates match the ref. */\n  | \"ambiguous\"\n  /** Bytes on disk differ from the hash the lock or compile manifest recorded. */\n  | \"hash_mismatch\"\n  /** Sub-agent composition loops back onto an agent already being composed. */\n  | \"cycle\"\n  /** `compile_manifest.json` has the old schema or is malformed. */\n  | \"stale_manifest\"\n  /** An `inline-snapshot` item has no compiled bytes. */\n  | \"not_compiled\";\n\n/** A locked asset whose pinned version the registered library no longer holds (p1510). */\nexport interface LockedAssetMoved {\n  /** Lock key, `kind:@publisher/name#version`. */\n  key: string;\n  /** Name of the library the lock entry came from. */\n  library: string;\n  /** Version the library holds now. */\n  libraryVersion: string;\n  /** Version the lock pins. */\n  lockedVersion: string;\n}\n\n/**\n * Thrown by the content source, the compile writer and the resolver. `code`\n * mirrors the `skaile validate` diagnostic of the same name.\n *\n * @docLink packages/runner/capabilities#composition-error\n */\nexport class CompositionError extends Error {\n  constructor(\n    readonly code: CompositionErrorCode,\n    readonly reason: CompositionErrorReason,\n    message: string,\n    /** The composes ref the failure belongs to, when there is one. */\n    readonly ref?: string,\n    /** Set when only `skaile update` can serve the ref: the library moved past the locked version. */\n    readonly moved?: LockedAssetMoved,\n  ) {\n    super(message);\n    this.name = \"CompositionError\";\n  }\n}\n\n/** True for a {@link CompositionError} with the given code (any code when omitted). */\nexport function isCompositionError(\n  err: unknown,\n  code?: CompositionErrorCode,\n): err is CompositionError {\n  return err instanceof CompositionError && (code === undefined || err.code === code);\n}\n","/**\n * mixin-resolver.ts\n *\n * Resolves agent composition mixin refs (persona, ruleset, knowledge) to text\n * for rendering into the agent definition at install time.\n *\n * Three ref forms:\n *   Local path  — \"./extra-rules.md\" or \"/abs/path/rules.md\"\n *                 Read directly relative to agentDir (or absolute).\n *   Bare name   — \"skaile-base\"\n *                 Resolved from repos as `${defaultKind}:skaile-base`\n *   Qualified   — \"persona:researcher@ext-repo#v2.0\"\n *                 Full AssetRef syntax; repo qualifier searches specific repo only.\n *\n * Knowledge bundles (kind=\"knowledge\") resolve to a directory — all *.md files\n * inside are loaded in priority order (same priority-based loadKnowledge logic used by the asset-manager).\n */\n\nimport fs from \"node:fs/promises\";\nimport path from \"node:path\";\nimport type { CatalogEntry } from \"@skaile/workspaces/core\";\nimport { parse as parseYaml } from \"yaml\";\n\n// ── Types ─────────────────────────────────────────────────────────────────────\n\n/**\n * A resolved mixin with its content loaded from disk.\n *\n * @docLink packages/runner/dev-guide#key-conventions\n */\nexport interface ResolvedMixin {\n  /** Text content ready for system prompt injection. */\n  content: string;\n  /** Absolute path to the source file, for debugging. */\n  source: string;\n}\n\n/**\n * Pre-built repo catalog map: repoName → CatalogEntry[].\n * Built by the caller (session-builder) from wsConfig.repositories using\n * ensureRepo() + scanRepo() from @skaile/workspaces/core/repo-manager.\n * Local repos are scanned directly; remote repos use the global cache.\n * @docLink packages/runner/dev-guide#key-conventions\n */\nexport type RepoMap = Record<string, CatalogEntry[]>;\n\n// ── Public API ────────────────────────────────────────────────────────────────\n\n/**\n * Resolve a single mixin ref to its text content.\n * Returns null if the ref cannot be resolved (missing file or unknown catalog name).\n * Never throws — callers filter nulls.\n * @docLink packages/runner/dev-guide#key-conventions\n */\nexport async function resolveMixin(\n  ref: string,\n  defaultKind: string,\n  agentDir: string,\n  repos: RepoMap,\n): Promise<ResolvedMixin | null> {\n  // ── Local path ────────────────────────────────────────────────────────────\n  if (ref.startsWith(\".\") || ref.startsWith(\"/\")) {\n    const absPath = ref.startsWith(\"/\") ? ref : path.join(agentDir, ref);\n    if (defaultKind === \"knowledge\") {\n      return loadKnowledgeDir(absPath);\n    }\n    const content = await readFileSafe(absPath);\n    if (!content) return null;\n    return { content: stripFrontmatter(content).trim(), source: absPath };\n  }\n\n  // ── Catalog ref ───────────────────────────────────────────────────────────\n  const { kind, name, repoQualifier } = parseRef(ref, defaultKind);\n  const entry = findInRepos(repos, kind, name, repoQualifier);\n  if (!entry) return null;\n\n  if (entry.kind === \"knowledge\") {\n    // knowledge.yaml source — load the sibling directory\n    return loadKnowledgeDir(path.dirname(entry.source));\n  }\n\n  // persona, ruleset, skill, contract — read manifest file, strip frontmatter\n  const raw = await readFileSafe(entry.source);\n  if (!raw) return null;\n  return { content: stripFrontmatter(raw).trim(), source: entry.source };\n}\n\n// ── Internal helpers ──────────────────────────────────────────────────────────\n\n/** Read a file, return empty string on any error. */\nasync function readFileSafe(filePath: string): Promise<string> {\n  try {\n    return await fs.readFile(filePath, \"utf-8\");\n  } catch {\n    return \"\";\n  }\n}\n\n/** Strip YAML frontmatter (--- delimited) from markdown content. */\nexport function stripFrontmatter(text: string): string {\n  return text.replace(/^---\\s*\\n[\\s\\S]*?\\n---\\s*\\n?/, \"\");\n}\n\n/**\n * Parse a mixin ref string into kind, name, and optional repo qualifier.\n * Handles: \"skaile-base\", \"persona:skaile-base\", \"ruleset:safety@skaile-ai#v2\"\n */\nfunction parseRef(\n  ref: string,\n  defaultKind: string,\n): { kind: string; name: string; repoQualifier: string | undefined } {\n  let rest = ref.trim();\n  let kind = defaultKind;\n\n  // Extract kind: prefix\n  const colonIdx = rest.indexOf(\":\");\n  if (colonIdx !== -1) {\n    kind = rest.slice(0, colonIdx).trim();\n    rest = rest.slice(colonIdx + 1).trim();\n  }\n\n  // Extract #pin suffix (drop it — we use whatever's installed)\n  const hashIdx = rest.indexOf(\"#\");\n  if (hashIdx !== -1) rest = rest.slice(0, hashIdx).trim();\n\n  // Extract @repo qualifier\n  let repoQualifier: string | undefined;\n  const atIdx = rest.indexOf(\"@\");\n  if (atIdx !== -1) {\n    repoQualifier = rest.slice(atIdx + 1).trim() || undefined;\n    rest = rest.slice(0, atIdx).trim();\n  }\n\n  return { kind, name: rest, repoQualifier };\n}\n\n/** Find a CatalogEntry by kind + name across all repos (or a specific repo). */\nfunction findInRepos(\n  repos: RepoMap,\n  kind: string,\n  name: string,\n  repoQualifier: string | undefined,\n): CatalogEntry | undefined {\n  const searchRepos = repoQualifier\n    ? repos[repoQualifier]\n      ? [repos[repoQualifier]]\n      : []\n    : Object.values(repos);\n\n  for (const entries of searchRepos) {\n    const found = entries.find((e) => e.kind === kind && e.name === name);\n    if (found) return found;\n  }\n  return undefined;\n}\n\n/**\n * True when `text` is a knowledge `index.yaml` that declares `documents: []` —\n * a valid, empty knowledge base. A missing, unparsable or `documents`-less\n * index is not.\n */\nexport function isEmptyKnowledgeIndex(text: string): boolean {\n  if (!text) return false;\n  let parsed: unknown;\n  try {\n    parsed = parseYaml(text);\n  } catch {\n    return false;\n  }\n  if (typeof parsed !== \"object\" || parsed === null || Array.isArray(parsed)) return false;\n  const documents = (parsed as { documents?: unknown }).documents;\n  return Array.isArray(documents) && documents.length === 0;\n}\n\n/**\n * Load all *.md files from a knowledge directory, in priority order.\n * Reads index.yaml (same priority-based loadKnowledge format used by the asset-manager) when present.\n * Returns combined content joined with \\n\\n---\\n\\n; an empty-documents index yields the index\n * bytes (see {@link isEmptyKnowledgeIndex}); null when the dir is missing or holds neither.\n */\nexport async function loadKnowledgeDir(dir: string): Promise<ResolvedMixin | null> {\n  let entries: string[];\n  try {\n    entries = (await fs.readdir(dir)).filter((e) => e.endsWith(\".md\"));\n  } catch {\n    return null;\n  }\n\n  // Parse index.yaml for priority ordering\n  const priorityMap: Record<string, number> = {};\n  const indexContent = await readFileSafe(path.join(dir, \"index.yaml\"));\n  if (indexContent) {\n    const pathMatches = [...indexContent.matchAll(/path:\\s*(\\S+)/g)];\n    const priorityMatches = [...indexContent.matchAll(/priority:\\s*(\\d+)/g)];\n    pathMatches.forEach((m, i) => {\n      const filename = m[1];\n      if (!filename) return;\n      const priority = priorityMatches[i] ? parseInt(priorityMatches[i][1] ?? \"99\", 10) : 99;\n      priorityMap[filename] = priority;\n    });\n  }\n\n  const docs = await Promise.all(\n    entries.map(async (filename) => ({\n      filename,\n      priority: priorityMap[filename] ?? 99,\n      content: (await readFileSafe(path.join(dir, filename))).trim(),\n    })),\n  );\n\n  const sorted = docs\n    .filter((d) => d.content)\n    .sort((a, b) => a.priority - b.priority || a.filename.localeCompare(b.filename));\n\n  if (sorted.length === 0) {\n    // A dir whose valid index declares no documents is an empty knowledge base,\n    // captured as its index bytes. Anything else without content is unresolved.\n    return isEmptyKnowledgeIndex(indexContent) ? { content: indexContent, source: dir } : null;\n  }\n\n  return {\n    content: sorted.map((d) => d.content).join(\"\\n\\n---\\n\\n\"),\n    source: dir,\n  };\n}\n","/**\n * composition/content-source.ts\n *\n * The one place composition bytes come from. A `composes:` ref resolves, in\n * order, through\n *\n *   1. a local path (`./rules.md`, `/abs/RULES.md`, a directory holding the\n *      kind's manifest) read straight from disk;\n *   2. the project lock (`skaile.lock.yaml`): a locked asset is served exactly\n *      as pinned, from the store cache or the catalog checkout, and its bytes\n *      are verified against the per-file hashes the lock recorded — the pin\n *      wins over whatever the catalog holds now;\n *   3. the catalog: a discovery scan of the local catalog roots (the\n *      `ai-assets/` tree, source clones). Several distinct matches are an\n *      error, never a pick.\n *\n * Nothing here touches the network. A ref that cannot be served throws a\n * {@link CompositionError}; an item is never dropped silently.\n */\n\nimport { spawnSync } from \"node:child_process\";\nimport { createHash } from \"node:crypto\";\nimport { existsSync, mkdirSync, readdirSync, realpathSync, statSync, writeFileSync } from \"node:fs\";\nimport fs from \"node:fs/promises\";\nimport path from \"node:path\";\nimport {\n  getGlobalCacheDir,\n  type LockEntry,\n  matchPin,\n  readLock,\n  resolveSkWorkspaceConfig,\n  sameRepo,\n  sourceCacheKey,\n} from \"@skaile/workspaces/core\";\nimport { createDefaultKindRegistry, type DiscoveredAsset } from \"@skaile/workspaces/discovery\";\nimport { knowledgeKindProvider, LocalIndex, scanLibraryRoot } from \"@skaile/workspaces/library\";\nimport type { IAssetKindRegistry } from \"@skaile/workspaces/plugins\";\nimport { CompositionError, type LockedAssetMoved } from \"./errors.js\";\nimport { loadKnowledgeDir, resolveMixin, stripFrontmatter } from \"../mixin-resolver.js\";\n\n// ---------------------------------------------------------------------------\n// Public types\n// ---------------------------------------------------------------------------\n\n/**\n * One composition asset as the content source served it.\n *\n * @docLink packages/runner/capabilities#composition-asset\n */\nexport interface CompositionAsset {\n  /**\n   * Where the bytes came from, in a stable spelling: `kind:@publisher/name#version`\n   * for a locked or catalog asset, `local:<path>` for a file on disk.\n   */\n  canonicalRef: string;\n  /** Asset kind the item was loaded as. */\n  kind: string;\n  /** Resolved version; `null` for a local file (identified by its content hash only). */\n  version: string | null;\n  /** SHA-256 (hex) of `content`. */\n  sha256: string;\n  /** Prompt-injectable text (frontmatter stripped). */\n  content: string;\n  /**\n   * Absolute path of the primary file (or knowledge directory) the content\n   * was read from. Diagnostic and traversal aid; never part of the compile\n   * manifest.\n   */\n  location?: string;\n}\n\n/**\n * Loads composition assets. One instance serves one agent directory (relative\n * refs resolve against it).\n *\n * @docLink packages/runner/capabilities#composition-content-source\n */\nexport interface CompositionContentSource {\n  /**\n   * Load the asset a `composes:` ref names.\n   * @throws {CompositionError} `composition_asset_missing` when nothing serves the ref;\n   *   `composition_conflict` when several candidates match or locked bytes drifted.\n   */\n  load(ref: string, kind: string): Promise<CompositionAsset>;\n  /** A source for another agent directory (sub-agent traversal), sharing catalog scans. */\n  scoped(agentDir: string): CompositionContentSource;\n}\n\n/**\n * Options for {@link createCompositionContentSource}.\n *\n * @docLink packages/runner/capabilities#composition-content-source\n */\nexport interface CompositionContentSourceOpts {\n  /** Agent definition directory — base of relative refs. */\n  agentDir: string;\n  /** Project root — holds `skaile.lock.yaml` and `.skaile/cache/store`. */\n  projectDir: string;\n  /** Kind registry used to recognise a kind's manifest file. Defaults to the built-in providers plus `knowledge`. */\n  registry?: IAssetKindRegistry;\n  /**\n   * Catalog roots to scan. Defaults to the `ai-assets/` tree above the project,\n   * the declared `sources:` clones and the project's source cache.\n   */\n  catalogRoots?: readonly string[];\n  /**\n   * The lock entries to resolve pins against, instead of reading `skaile.lock.yaml`. A command\n   * that renders before it writes its new lock (`skaile update`) hands over the entries it is\n   * about to write.\n   */\n  lockAssets?: Record<string, LockEntry>;\n}\n\n// ---------------------------------------------------------------------------\n// Ref parsing\n// ---------------------------------------------------------------------------\n\ninterface ParsedRef {\n  publisher?: string;\n  name: string;\n  /** Version pin (`#1.2.3`, `#^1`, legacy `@^1`). */\n  pin?: string;\n}\n\n/**\n * Split a catalog ref into publisher, name and pin. Accepts the canonical\n * `kind:@publisher/name#pin`, a bare `@publisher/name` / `name`, and the legacy\n * `@publisher/name@pin` spelling. The `kind:` prefix is dropped: the item's\n * own `kind` is authoritative.\n */\nfunction parseCatalogRef(ref: string): ParsedRef {\n  let rest = ref.trim();\n  const kindPrefix = /^([a-z][a-z0-9-]*):(?!\\/\\/)/.exec(rest);\n  if (kindPrefix) rest = rest.slice(kindPrefix[0].length);\n\n  let pin: string | undefined;\n  const hash = rest.indexOf(\"#\");\n  if (hash !== -1) {\n    pin = rest.slice(hash + 1).trim() || undefined;\n    rest = rest.slice(0, hash);\n  }\n\n  const scoped = /^@([^/@]+)\\/([^@]+)(?:@(.+))?$/.exec(rest);\n  if (scoped) {\n    return { publisher: scoped[1], name: scoped[2], pin: pin ?? scoped[3]?.trim() };\n  }\n  const at = rest.indexOf(\"@\");\n  if (at !== -1) {\n    // `name@publisher` (the older mixin spelling).\n    return { publisher: rest.slice(at + 1) || undefined, name: rest.slice(0, at), pin };\n  }\n  return { name: rest, pin };\n}\n\nconst LOCK_KEY_RE = /^([a-z][a-z0-9-]*):@([^/]+)\\/([^#]+)#(.+)$/;\n\nconst barePublisher = (p: string): string => (p.startsWith(\"@\") ? p.slice(1) : p);\n\nconst sha256Of = (text: string | Uint8Array): string =>\n  createHash(\"sha256\").update(text).digest(\"hex\");\n\n// ---------------------------------------------------------------------------\n// Catalog scan (shared, lazy, per root)\n// ---------------------------------------------------------------------------\n\ninterface ScannedAsset {\n  asset: DiscoveredAsset;\n  root: string;\n}\n\nclass CatalogScanner {\n  private readonly scans = new Map<string, ScannedAsset[]>();\n  private roots: readonly string[] | undefined;\n\n  constructor(\n    private readonly projectDir: string,\n    private readonly registry: IAssetKindRegistry,\n    explicitRoots: readonly string[] | undefined,\n  ) {\n    this.roots = explicitRoots;\n  }\n\n  /** Every discovered asset of `kind` named `name` under one root (any root, declared or not). */\n  findIn(root: string, kind: string, name: string): ScannedAsset[] {\n    return this.scan(root).filter((hit) => hit.asset.kind === kind && hit.asset.name === name);\n  }\n\n  /** Every discovered asset of `kind` named `name`, across all roots. */\n  find(kind: string, name: string): ScannedAsset[] {\n    const out: ScannedAsset[] = [];\n    for (const root of this.resolveRoots()) {\n      for (const hit of this.scan(root)) {\n        if (hit.asset.kind === kind && hit.asset.name === name) out.push(hit);\n      }\n    }\n    return out;\n  }\n\n  private scan(root: string): ScannedAsset[] {\n    let cached = this.scans.get(root);\n    if (!cached) {\n      try {\n        cached = scanLibraryRoot(root, this.registry).assets.map((asset) => ({ asset, root }));\n      } catch {\n        cached = [];\n      }\n      this.scans.set(root, cached);\n    }\n    return cached;\n  }\n\n  private resolveRoots(): readonly string[] {\n    if (!this.roots) this.roots = defaultCatalogRoots(this.projectDir);\n    return this.roots;\n  }\n}\n\nfunction defaultCatalogRoots(projectDir: string): string[] {\n  const roots = new Set<string>();\n  const add = (dir: string | undefined): void => {\n    if (!dir || !existsSync(dir)) return;\n    try {\n      if (statSync(dir).isDirectory()) roots.add(realpathSync(dir));\n    } catch {\n      // unreadable root — skip\n    }\n  };\n\n  // ai-assets/ above the project (same upward walk agent:<name> resolution uses).\n  let dir = path.resolve(projectDir);\n  for (let i = 0; i < 8; i++) {\n    const candidate = path.join(dir, \"ai-assets\");\n    if (existsSync(candidate)) {\n      add(candidate);\n      break;\n    }\n    const parent = path.resolve(dir, \"..\");\n    if (parent === dir) break;\n    dir = parent;\n  }\n\n  // Declared `sources:` clones in the global cache.\n  try {\n    for (const source of resolveSkWorkspaceConfig(projectDir).sources ?? []) {\n      add(path.join(getGlobalCacheDir(), sourceCacheKey(source.url)));\n    }\n  } catch {\n    // an unreadable skaile.yaml must not break composition of local refs\n  }\n\n  // The project's own source cache (clones / symlinks).\n  const projectSources = path.join(projectDir, \".skaile\", \"cache\", \"sources\");\n  try {\n    for (const entry of readdirSync(projectSources)) add(path.join(projectSources, entry));\n  } catch {\n    // no project source cache\n  }\n  return [...roots];\n}\n\n/**\n * Local roots of the registered libraries a library-origin lock entry can come from: the\n * library registered under the recorded name, else (the name is machine-local) one with the\n * recorded remote URL. Empty when none is registered or its folder is gone.\n */\nasync function registeredLibraryRoots(origin: { name: string; url?: string }): Promise<string[]> {\n  let index: LocalIndex | undefined;\n  try {\n    index = new LocalIndex();\n    const libraries = await index.listSources();\n    const byName = libraries.filter((l) => l.name === origin.name);\n    const byUrl =\n      byName.length === 0 && origin.url\n        ? libraries.filter((l) => {\n            const url = (l.backendConfig as { url?: unknown }).url;\n            return typeof url === \"string\" && sameRepo(url, origin.url ?? \"\");\n          })\n        : [];\n    return [...byName, ...byUrl].map((l) => l.path).filter((dir) => existsSync(dir));\n  } catch {\n    return [];\n  } finally {\n    index?.close();\n  }\n}\n\n// ---------------------------------------------------------------------------\n// Content source\n// ---------------------------------------------------------------------------\n\n/**\n * Create the content source for one agent directory.\n *\n * @param opts - Agent dir, project dir and optional registry / catalog roots.\n * @returns A {@link CompositionContentSource} that resolves local, lock-pinned and catalog refs.\n * @docLink packages/runner/capabilities#composition-content-source\n */\nexport function createCompositionContentSource(\n  opts: CompositionContentSourceOpts,\n): CompositionContentSource {\n  const registry = opts.registry ?? createDefaultKindRegistry([knowledgeKindProvider]);\n  const scanner = new CatalogScanner(opts.projectDir, registry, opts.catalogRoots);\n  return new DefaultCompositionContentSource(\n    path.resolve(opts.agentDir),\n    path.resolve(opts.projectDir),\n    registry,\n    scanner,\n    opts.lockAssets,\n  );\n}\n\nclass DefaultCompositionContentSource implements CompositionContentSource {\n  private lockLoaded: boolean;\n  private lockAssets: Record<string, LockEntry>;\n\n  constructor(\n    private readonly agentDir: string,\n    private readonly projectDir: string,\n    private readonly registry: IAssetKindRegistry,\n    private readonly scanner: CatalogScanner,\n    private readonly givenLock?: Record<string, LockEntry>,\n  ) {\n    this.lockLoaded = givenLock !== undefined;\n    this.lockAssets = givenLock ?? {};\n  }\n\n  scoped(agentDir: string): CompositionContentSource {\n    return new DefaultCompositionContentSource(\n      path.resolve(agentDir),\n      this.projectDir,\n      this.registry,\n      this.scanner,\n      this.givenLock,\n    );\n  }\n\n  async load(ref: string, kind: string): Promise<CompositionAsset> {\n    if (ref.startsWith(\".\") || ref.startsWith(\"/\")) return this.loadLocal(ref, kind);\n    const parsed = parseCatalogRef(ref);\n    if (!parsed.name) {\n      throw new CompositionError(\n        \"composition_asset_missing\",\n        \"missing\",\n        `\"${ref}\" (${kind}): not a resolvable ref`,\n        ref,\n      );\n    }\n    const locked = this.lockCandidate(ref, kind, parsed);\n    if (locked) return this.loadLocked(ref, kind, locked);\n    return this.loadFromCatalog(ref, kind, parsed);\n  }\n\n  // ── local ────────────────────────────────────────────────────────────────\n\n  private async loadLocal(ref: string, kind: string): Promise<CompositionAsset> {\n    const absPath = ref.startsWith(\"/\") ? ref : path.join(this.agentDir, ref);\n    let target = absPath;\n    let resolved = await resolveMixin(ref, kind, this.agentDir, {});\n    if (!resolved && kind !== \"knowledge\" && isDirectory(absPath)) {\n      const manifest = this.manifestInDir(kind, absPath);\n      if (manifest) {\n        target = manifest;\n        resolved = await resolveMixin(manifest, kind, this.agentDir, {});\n      }\n    }\n    if (!resolved) {\n      throw new CompositionError(\n        \"composition_asset_missing\",\n        \"missing\",\n        `\"${ref}\" (${kind}): no content at ${absPath}`,\n        ref,\n      );\n    }\n    return {\n      canonicalRef: `local:${this.relativeToProject(target)}`,\n      kind,\n      version: null,\n      sha256: sha256Of(resolved.content),\n      content: resolved.content,\n      location: resolved.source,\n    };\n  }\n\n  private manifestInDir(kind: string, dir: string): string | undefined {\n    const provider = this.registry.getProvider(kind);\n    for (const name of readdirSync(dir).sort()) {\n      const matches = provider ? provider.matchesPath(name) : name === `${kind.toUpperCase()}.md`;\n      if (matches && statSync(path.join(dir, name)).isFile()) return path.join(dir, name);\n    }\n    return undefined;\n  }\n\n  private relativeToProject(abs: string): string {\n    const rel = path.relative(this.projectDir, abs).split(path.sep).join(\"/\");\n    return rel.startsWith(\"..\") ? abs : rel;\n  }\n\n  // ── lock pin ─────────────────────────────────────────────────────────────\n\n  private lockCandidate(\n    ref: string,\n    kind: string,\n    parsed: ParsedRef,\n  ): { key: string; publisher: string; name: string; version: string; entry: LockEntry } | null {\n    if (!this.lockLoaded) {\n      this.lockLoaded = true;\n      try {\n        this.lockAssets = readLock(path.join(this.projectDir, \"skaile.lock.yaml\"))?.assets ?? {};\n      } catch (err) {\n        throw new CompositionError(\n          \"composition_conflict\",\n          \"stale_manifest\",\n          `skaile.lock.yaml is unreadable: ${err instanceof Error ? err.message : String(err)}`,\n          ref,\n        );\n      }\n    }\n    const matches: Array<{\n      key: string;\n      publisher: string;\n      name: string;\n      version: string;\n      entry: LockEntry;\n    }> = [];\n    for (const [key, entry] of Object.entries(this.lockAssets)) {\n      const m = LOCK_KEY_RE.exec(key);\n      if (!m || m[1] !== kind || m[3] !== parsed.name) continue;\n      if (parsed.publisher && barePublisher(parsed.publisher) !== m[2]) continue;\n      if (parsed.pin && !matchPin(parsed.pin, m[4])) continue;\n      matches.push({ key, publisher: m[2], name: m[3], version: m[4], entry });\n    }\n    if (matches.length > 1) {\n      throw new CompositionError(\n        \"composition_conflict\",\n        \"ambiguous\",\n        `\"${ref}\" (${kind}): skaile.lock.yaml pins ${matches.length} matching assets (${matches\n          .map((x) => x.key)\n          .join(\", \")}) — qualify the ref with a publisher and version`,\n        ref,\n      );\n    }\n    return matches[0] ?? null;\n  }\n\n  private async loadLocked(\n    ref: string,\n    kind: string,\n    pin: { key: string; publisher: string; name: string; version: string; entry: LockEntry },\n  ): Promise<CompositionAsset> {\n    const { entry } = pin;\n    const storeDir = path.join(\n      this.projectDir,\n      \".skaile\",\n      \"cache\",\n      \"store\",\n      pin.publisher,\n      kind,\n      pin.name,\n      pin.version,\n    );\n\n    // Lock paths are repo-relative; the asset dir (store cache or checkout) holds them minus\n    // the directory prefix they all share.\n    const prefix = commonDirPrefix(entry.files.map((f) => f.path));\n    const strip = (p: string): string =>\n      prefix && p.startsWith(`${prefix}/`) ? p.slice(prefix.length + 1) : p;\n\n    // 1. Store cache: the exact pinned bytes, flat under <store>/<pub>/<kind>/<name>/<version>.\n    if (isDirectory(storeDir) && entry.files.length > 0) {\n      await this.verifyFiles(ref, pin.key, entry, (p) => path.join(storeDir, strip(p)));\n      const primary = this.primaryOf(\n        kind,\n        entry.files.map((f) => f.path),\n      );\n      return this.readAsset(\n        kind,\n        pin.key,\n        pin.version,\n        path.join(storeDir, strip(primary)),\n        storeDir,\n      );\n    }\n\n    // 2. A catalog checkout holding the pinned version; a library-origin asset also\n    // reads from the registered library its lock entry records (it has no source clone).\n    const holdsPin = (h: ScannedAsset): boolean =>\n      h.asset.version === pin.version && barePublisher(h.asset.publisher) === pin.publisher;\n    let hit = this.scanner.find(kind, pin.name).find(holdsPin);\n    if (!hit && entry.library) {\n      for (const root of await registeredLibraryRoots(entry.library)) {\n        hit = this.scanner.findIn(root, kind, pin.name).find(holdsPin);\n        if (hit) break;\n      }\n    }\n    if (!hit) {\n      // A source entry keeps its own commit: the shared clone may sit on another one.\n      const atCommit = await this.loadAtLockedCommit(ref, kind, pin, strip);\n      if (atCommit) return atCommit;\n      // The registered library holds the asset at another version: the pinned bytes are gone\n      // and only `skaile update` moves the lock to the library's copy (p1510), as for a skill.\n      let moved: LockedAssetMoved | undefined;\n      if (entry.library) {\n        for (const root of await registeredLibraryRoots(entry.library)) {\n          const other = this.scanner\n            .findIn(root, kind, pin.name)\n            .find((h) => barePublisher(h.asset.publisher) === pin.publisher);\n          if (other?.asset.version) {\n            moved = {\n              key: pin.key,\n              library: entry.library.name,\n              libraryVersion: other.asset.version,\n              lockedVersion: pin.version,\n            };\n            break;\n          }\n        }\n      }\n      throw new CompositionError(\n        \"composition_asset_missing\",\n        \"missing\",\n        moved\n          ? `\"${ref}\" (${kind}): skaile.lock.yaml pins ${pin.key} but library \"${moved.library}\" is at ${moved.libraryVersion} — run \\`skaile update\\` to move the lock to it`\n          : `\"${ref}\" (${kind}): skaile.lock.yaml pins ${pin.key} but no bytes for it are on disk — run \\`skaile install\\``,\n        ref,\n        moved,\n      );\n    }\n    const assetRoot = hit.asset.fileFilter.assetRoot;\n    if (entry.files.length > 0) {\n      try {\n        await this.verifyFiles(ref, pin.key, entry, (p) => path.join(assetRoot, strip(p)));\n      } catch (err) {\n        // Same version, other bytes: the clone is on another commit than the entry's own.\n        const atCommit = await this.loadAtLockedCommit(ref, kind, pin, strip);\n        if (atCommit) return atCommit;\n        throw err;\n      }\n    } else if (entry.library?.sha256 && entry.library.sha256 !== hit.asset.sha256) {\n      throw new CompositionError(\n        \"composition_conflict\",\n        \"hash_mismatch\",\n        `\"${ref}\" (${kind}): ${pin.key} was locked from a library at ${entry.library.sha256.slice(0, 12)}… but the catalog now holds ${hit.asset.sha256.slice(0, 12)}…`,\n        ref,\n      );\n    }\n    return this.readAsset(kind, pin.key, pin.version, hit.asset.manifestPath, assetRoot);\n  }\n\n  /**\n   * A source-origin entry's bytes at ITS locked commit, read from the git objects of a source\n   * clone that holds the commit (the clone's checkout never moves) and staged under the\n   * project cache. `null` when the entry is not a source entry or no clone holds the commit; the\n   * staged bytes are verified against the lock like any other.\n   */\n  private async loadAtLockedCommit(\n    ref: string,\n    kind: string,\n    pin: { key: string; publisher: string; name: string; version: string; entry: LockEntry },\n    strip: (p: string) => string,\n  ): Promise<CompositionAsset | null> {\n    const { entry } = pin;\n    const source = entry.source;\n    if (!source || entry.library || entry.origin === \"store\" || entry.files.length === 0) {\n      return null;\n    }\n    // The value goes to git as an argument: only a full sha, never a ref name, `-` option or zeros.\n    if (!/^[0-9a-f]{40}$/.test(source.commit) || /^0+$/.test(source.commit)) return null;\n    const clones = [path.join(getGlobalCacheDir(), sourceCacheKey(source.url))];\n    const projectSources = path.join(this.projectDir, \".skaile\", \"cache\", \"sources\");\n    try {\n      for (const e of readdirSync(projectSources)) clones.push(path.join(projectSources, e));\n    } catch {\n      // no project source cache\n    }\n    const git = (dir: string, args: string[]) =>\n      spawnSync(\"git\", [\"-C\", dir, ...args], {\n        stdio: \"pipe\",\n        maxBuffer: 256 * 1024 * 1024,\n        env: { ...process.env, GIT_TERMINAL_PROMPT: \"0\" },\n      });\n    const clone = clones.find(\n      (dir) =>\n        existsSync(dir) && git(dir, [\"cat-file\", \"-e\", `${source.commit}^{commit}`]).status === 0,\n    );\n    if (!clone) return null;\n    const stageDir = path.join(\n      this.projectDir,\n      \".skaile\",\n      \"cache\",\n      \"source-commits\",\n      source.commit,\n      pin.publisher,\n      kind,\n      pin.name,\n      pin.version,\n    );\n    for (const file of entry.files) {\n      const shown = git(clone, [\"show\", `${source.commit}:${file.path}`]);\n      if (shown.status !== 0) return null;\n      const dest = path.join(stageDir, strip(file.path));\n      mkdirSync(path.dirname(dest), { recursive: true });\n      writeFileSync(dest, shown.stdout);\n    }\n    await this.verifyFiles(ref, pin.key, entry, (p) => path.join(stageDir, strip(p)));\n    const primary = this.primaryOf(\n      kind,\n      entry.files.map((f) => f.path),\n    );\n    return this.readAsset(\n      kind,\n      pin.key,\n      pin.version,\n      path.join(stageDir, strip(primary)),\n      stageDir,\n    );\n  }\n\n  private async verifyFiles(\n    ref: string,\n    key: string,\n    entry: LockEntry,\n    locate: (lockPath: string) => string,\n  ): Promise<void> {\n    for (const file of entry.files) {\n      const abs = locate(file.path);\n      let bytes: Uint8Array;\n      try {\n        bytes = await fs.readFile(abs);\n      } catch {\n        throw new CompositionError(\n          \"composition_asset_missing\",\n          \"missing\",\n          `\"${ref}\": ${key} lists ${file.path} but ${abs} is missing — run \\`skaile install\\``,\n          ref,\n        );\n      }\n      const actual = sha256Of(bytes);\n      if (actual !== file.sha256) {\n        throw new CompositionError(\n          \"composition_conflict\",\n          \"hash_mismatch\",\n          `\"${ref}\": ${file.path} of ${key} is ${actual.slice(0, 12)}… on disk but skaile.lock.yaml pins ${file.sha256.slice(0, 12)}… — run \\`skaile install\\` to restore it`,\n          ref,\n        );\n      }\n    }\n  }\n\n  private primaryOf(kind: string, paths: readonly string[]): string {\n    const provider = this.registry.getProvider(kind);\n    const hit = provider ? paths.find((p) => provider.matchesPath(p)) : undefined;\n    return hit ?? paths[0] ?? \"\";\n  }\n\n  // ── catalog ──────────────────────────────────────────────────────────────\n\n  private async loadFromCatalog(\n    ref: string,\n    kind: string,\n    parsed: ParsedRef,\n  ): Promise<CompositionAsset> {\n    const wantPublisher = parsed.publisher ? barePublisher(parsed.publisher) : undefined;\n    const candidates = this.scanner\n      .find(kind, parsed.name)\n      .filter((h) => !wantPublisher || barePublisher(h.asset.publisher) === wantPublisher)\n      .filter((h) => matchPin(parsed.pin, h.asset.version));\n\n    // The same asset reached through two roots (symlinked clone) is one candidate.\n    const distinct = new Map<string, ScannedAsset>();\n    for (const c of candidates) {\n      distinct.set(`${c.asset.publisher}/${c.asset.name}#${c.asset.version}:${c.asset.sha256}`, c);\n    }\n    if (distinct.size === 0) {\n      throw new CompositionError(\n        \"composition_asset_missing\",\n        \"missing\",\n        `\"${ref}\" (${kind}): not in skaile.lock.yaml and not found in the local catalog`,\n        ref,\n      );\n    }\n    if (distinct.size > 1) {\n      throw new CompositionError(\n        \"composition_conflict\",\n        \"ambiguous\",\n        `\"${ref}\" (${kind}): ${distinct.size} catalog assets match (${[...distinct.values()]\n          .map((c) => `@${barePublisher(c.asset.publisher)}/${c.asset.name}#${c.asset.version}`)\n          .join(\", \")}) — qualify the ref with a publisher and version`,\n        ref,\n      );\n    }\n    const { asset } = [...distinct.values()][0]!;\n    const canonical = `${kind}:@${barePublisher(asset.publisher)}/${asset.name}#${asset.version}`;\n    return this.readAsset(\n      kind,\n      canonical,\n      asset.version,\n      asset.manifestPath,\n      asset.fileFilter.assetRoot,\n    );\n  }\n\n  // ── shared read ──────────────────────────────────────────────────────────\n\n  private async readAsset(\n    kind: string,\n    canonicalRef: string,\n    version: string,\n    primaryPath: string,\n    assetRoot: string,\n  ): Promise<CompositionAsset> {\n    let content: string;\n    let location = primaryPath;\n    if (kind === \"knowledge\") {\n      const dir =\n        path.basename(primaryPath) === \"knowledge.yaml\" ? path.dirname(primaryPath) : assetRoot;\n      const loaded = await loadKnowledgeDir(dir);\n      if (!loaded) {\n        throw new CompositionError(\n          \"composition_asset_missing\",\n          \"missing\",\n          `\"${canonicalRef}\": knowledge directory ${dir} holds no documents`,\n          canonicalRef,\n        );\n      }\n      content = loaded.content;\n      location = dir;\n    } else {\n      let raw: string;\n      try {\n        raw = await fs.readFile(primaryPath, \"utf-8\");\n      } catch {\n        throw new CompositionError(\n          \"composition_asset_missing\",\n          \"missing\",\n          `\"${canonicalRef}\": ${primaryPath} is not readable`,\n          canonicalRef,\n        );\n      }\n      content = stripFrontmatter(raw).trim();\n    }\n    return { canonicalRef, kind, version, sha256: sha256Of(content), content, location };\n  }\n}\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\nfunction isDirectory(p: string): boolean {\n  try {\n    return statSync(p).isDirectory();\n  } catch {\n    return false;\n  }\n}\n\n/** Longest directory prefix shared by every path (`\"\"` when there is none). */\nfunction commonDirPrefix(paths: readonly string[]): string {\n  if (paths.length === 0) return \"\";\n  const split = paths.map((p) => p.split(\"/\").slice(0, -1));\n  const first = split[0]!;\n  let n = first.length;\n  for (const parts of split) {\n    let i = 0;\n    while (i < n && i < parts.length && parts[i] === first[i]) i++;\n    n = i;\n  }\n  return first.slice(0, n).join(\"/\");\n}\n\n/**\n * Hash helper shared by the compile writer and the resolver: the hash a\n * {@link CompositionAsset} / compile entry records for `content`.\n */\nexport function hashContent(content: string): string {\n  return sha256Of(content);\n}\n","/**\n * composition/types.ts\n *\n * Shared types for the agent composition module (Task 1.7).\n *\n * Defines the binding system, compile manifest schema, and the\n * resolved composition result that the runner consumes at session start.\n */\n\nimport type { AgentComposeItem, Binding } from \"@skaile/workspaces/types/manifests\";\n\n// ---------------------------------------------------------------------------\n// Re-export from types\n// ---------------------------------------------------------------------------\n\nexport type { AgentComposeItem, Binding };\n\n// ---------------------------------------------------------------------------\n// Kind-to-binding defaults\n// ---------------------------------------------------------------------------\n\n/**\n * Default binding by asset kind.\n *\n * Per the spec: soul -> inline-snapshot, ruleset -> inline-live,\n * everything else (skill, knowledge, connector, etc.) -> discoverable,\n * agent -> delegate (a sub-agent the harness spawns natively; `run` is opt-in).\n * A kind with no entry here has no default: {@link resolveBinding} throws\n * {@link UnknownCompositionKindError} rather than guessing.\n */\nconst KIND_BINDING_DEFAULTS: Record<string, Binding> = {\n  soul: \"inline-snapshot\",\n  persona: \"inline-snapshot\",\n  ruleset: \"inline-live\",\n  skill: \"discoverable\",\n  knowledge: \"discoverable\",\n  connector: \"discoverable\",\n  prompt: \"inline-live\",\n  flow: \"discoverable\",\n  \"mcp-server\": \"discoverable\",\n  contract: \"inline-live\",\n  agent: \"delegate\",\n};\n\n/**\n * Thrown by {@link resolveBinding} when a composition item has no explicit\n * `binding` and its `kind` has no default. `skaile validate` reports the same\n * condition earlier as `unknown_asset_kind`.\n */\nexport class UnknownCompositionKindError extends Error {\n  readonly code = \"unknown_asset_kind\";\n  constructor(\n    readonly kind: string,\n    readonly ref: string,\n  ) {\n    super(`composes item \"${ref}\" has unknown asset kind \"${kind}\" and no explicit binding`);\n    this.name = \"UnknownCompositionKindError\";\n  }\n}\n\n/**\n * Resolve the effective binding for a composition item.\n * Uses explicit `binding` if set, otherwise falls back to kind default.\n *\n * @param item - A single entry from an agent manifest's `composes:` list.\n * @returns The effective {@link Binding} — explicit value when set, otherwise\n *   the kind-specific default (e.g. `soul` → `inline-snapshot`, `skill` → `discoverable`).\n * @throws {UnknownCompositionKindError} when no `binding` is set and the kind has no default.\n * @docLink packages/runner/capabilities#resolve-binding\n */\nexport function resolveBinding(item: AgentComposeItem): Binding {\n  if (item.binding) return item.binding;\n  if (!Object.hasOwn(KIND_BINDING_DEFAULTS, item.kind)) {\n    throw new UnknownCompositionKindError(item.kind, item.ref);\n  }\n  return KIND_BINDING_DEFAULTS[item.kind]!;\n}\n\n// ---------------------------------------------------------------------------\n// Compile manifest (written to <agent>/compile_manifest.json)\n// ---------------------------------------------------------------------------\n\n/**\n * Single entry in the agent's `compile_manifest.json`. Records the resolved\n * ref, version, content hash, effective binding and the captured bytes of one\n * composition item at the time of the last `skaile rebuild` run.\n *\n * @docLink packages/runner/capabilities#compile-manifest-entry\n */\nexport interface CompileManifestEntry {\n  /** The `composes[].ref` exactly as written in agent.yaml. */\n  asset_ref: string;\n  /** The item's asset kind. */\n  kind: string;\n  /** Where the bytes actually came from (`kind:@publisher/name#version` or `local:<path>`). */\n  resolved_ref: string;\n  /** Resolved version; `null` for a local file. */\n  version: string | null;\n  /** SHA256 of `content` (recomputed on every read). */\n  hash: string;\n  /** Effective binding. */\n  binding: Binding;\n  /** ISO timestamp when this entry was resolved. */\n  resolved_at: string;\n  /** The captured bytes: what `inline-snapshot` serves and `discoverable` hands out on invocation. */\n  content: string;\n}\n\n/**\n * Root structure of `compile_manifest.json` written by `skaile rebuild`.\n * Tracks the prompt version counter and all resolved composition entries.\n * The runner serves `inline-snapshot` and `discoverable` content from these\n * entries and never from the live sources.\n *\n * @docLink packages/runner/capabilities#compile-manifest\n */\nexport interface CompileManifest {\n  /** Compile manifest schema version (1 was the hash-only format; it must be rebuilt). */\n  schema_version: 2;\n  /** Prompt version — bumped on every rebuild */\n  prompt_version: number;\n  /** Entries for each composition item */\n  entries: CompileManifestEntry[];\n  /** ISO timestamp of the last rebuild */\n  compiled_at: string;\n}\n\n/**\n * The bytes one run of an agent uses for every non-snapshot composition item,\n * captured when the run starts and reused when the run resumes. Stored beside\n * the session's persisted state (`<project>/.skaile/composition-runs/<id>.json`).\n *\n * @docLink packages/runner/capabilities#composition-run-snapshot\n */\nexport interface CompositionRunSnapshot {\n  schema_version: 1;\n  /** Session id (or run id) the snapshot belongs to. */\n  session_id: string;\n  /** ISO timestamp of capture. */\n  captured_at: string;\n  /** Compile `prompt_version` the run started under (`null` when never compiled). */\n  prompt_version: number | null;\n  /** One entry per resolved item (content items and sub-agent items). */\n  items: CompileManifestEntry[];\n}\n\n// ---------------------------------------------------------------------------\n// Resolved composition result (consumed by runner at session start)\n// ---------------------------------------------------------------------------\n\n/**\n * A resolved inline content block for system prompt injection.\n *\n * @docLink packages/runner/capabilities#inline-block\n */\nexport interface InlineBlock {\n  /** Source ref for debugging */\n  ref: string;\n  /** Asset kind */\n  kind: string;\n  /** The text content to inject */\n  content: string;\n  /** Binding mode that produced this block */\n  binding: \"inline-live\" | \"inline-snapshot\";\n  /**\n   * True for the agent's own convention files (SOUL.md, RULES.md, DUTIES.md).\n   * Harnesses carry those natively (rendered at install), so the runner does\n   * not repeat them in the live system prompt.\n   */\n  implicit?: boolean;\n}\n\n/**\n * A resolved discoverable item (becomes a tool-list entry).\n *\n * @docLink packages/runner/capabilities#discoverable-entry\n */\nexport interface DiscoverableEntry {\n  /** Source ref */\n  ref: string;\n  /** Asset kind */\n  kind: string;\n  /** Tool name for capability registry */\n  name: string;\n  /** One-line description */\n  description: string;\n  /** Full content (loaded on demand when the tool is invoked) */\n  content: string;\n}\n\n/**\n * One composition item as resolved for a run — what `skaile run --dry-run`\n * prints and what the run snapshot is built from.\n *\n * @docLink packages/runner/capabilities#resolved-composition-item\n */\nexport interface ResolvedCompositionItem {\n  /** `composes[].ref` as written. */\n  ref: string;\n  kind: string;\n  binding: Binding;\n  /** Where the bytes came from (`kind:@publisher/name#version` or `local:<path>`). */\n  resolvedRef: string;\n  version: string | null;\n  /** SHA256 of `content`. */\n  hash: string;\n  content: string;\n  /**\n   * `compiled` — served from the compile manifest; `run-snapshot` — reused from\n   * the run's own capture (resume); `source` — read from the content source now.\n   */\n  origin: \"compiled\" | \"run-snapshot\" | \"source\";\n}\n\n/**\n * The full result of resolving an agent's composes: field.\n *\n * @docLink packages/runner/capabilities#resolved-composition\n */\nexport interface ResolvedComposition {\n  /** Blocks to inline into the system prompt (inline-live + inline-snapshot) */\n  inlineBlocks: InlineBlock[];\n  /** Items to register as discoverable capabilities */\n  discoverableEntries: DiscoverableEntry[];\n  /** Every resolved content item, in `composes:` order (sub-agent items carry no content and are absent). */\n  items: ResolvedCompositionItem[];\n  /** Non-fatal notes */\n  warnings: string[];\n}\n","/**\n * composition/compile.ts\n *\n * Implements `skaile rebuild <agent>` — resolves every `composes:` item through\n * the content source, captures kind, resolved ref and bytes, bumps the prompt\n * version and writes `<agent>/compile_manifest.json` (schema 2).\n *\n * The compile manifest is what an agent runs from: `inline-snapshot` serves its\n * bytes and `discoverable` items hand out its bytes on invocation. A later\n * change to a local file or to the catalog changes nothing until the next\n * `skaile rebuild`.\n */\n\nimport { existsSync, realpathSync } from \"node:fs\";\nimport fs from \"node:fs/promises\";\nimport path from \"node:path\";\nimport type { AgentComposeItem } from \"@skaile/workspaces/types/manifests\";\nimport { BindingSchema } from \"@skaile/workspaces/types/manifests\";\nimport { parse as parseYaml } from \"yaml\";\nimport * as z from \"zod\";\nimport {\n  type CompositionAsset,\n  type CompositionContentSource,\n  hashContent,\n} from \"./content-source.js\";\nimport { CompositionError } from \"./errors.js\";\nimport { type CompileManifest, type CompileManifestEntry, resolveBinding } from \"./types.js\";\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/**\n * Filename for the agent compile manifest written by `skaile rebuild`.\n *\n * @docLink packages/runner/capabilities#compile-composition\n */\nexport const COMPILE_MANIFEST_FILENAME = \"compile_manifest.json\";\n\n/** One captured composition item, as stored in `compile_manifest.json` and in run snapshots. */\nexport const CompileManifestEntrySchema = z.object({\n  asset_ref: z.string().min(1),\n  kind: z.string().min(1),\n  resolved_ref: z.string().min(1),\n  version: z.string().nullable(),\n  hash: z.string().regex(/^[0-9a-f]{64}$/),\n  binding: BindingSchema,\n  resolved_at: z.string(),\n  content: z.string(),\n});\n\nconst CompileManifestSchema = z.object({\n  schema_version: z.literal(2),\n  prompt_version: z.number().int().nonnegative(),\n  compiled_at: z.string(),\n  entries: z.array(CompileManifestEntrySchema),\n});\n\n/** Marks the pre-content (hash-only) manifest format. */\nconst StaleSchemaMarker = z.object({ schema_version: z.literal(1) });\n\n/** The slice of a sub-agent's agent.yaml the cycle walk reads. */\nconst NestedAgentComposes = z.object({ composes: z.array(z.unknown()) });\nconst NestedAgentItem = z.object({ kind: z.literal(\"agent\"), ref: z.string() });\n\n// ---------------------------------------------------------------------------\n// Options\n// ---------------------------------------------------------------------------\n\n/**\n * Options for {@link compileComposition}.\n *\n * @docLink packages/runner/capabilities#compile-composition\n */\nexport interface CompileOpts {\n  /** Path to the agent directory (where agent.yaml and compile_manifest.json live) */\n  agentDir: string;\n  /** The agent's composes: items (may be empty — an empty composition is valid). */\n  items: AgentComposeItem[];\n  /** Where composition bytes come from. */\n  source: CompositionContentSource;\n}\n\n/**\n * Result returned by {@link compileComposition}.\n *\n * @docLink packages/runner/capabilities#compile-composition\n */\nexport interface CompileResult {\n  /** The written compile manifest */\n  manifest: CompileManifest;\n  /** Path to the written file */\n  manifestPath: string;\n  /** Number of entries written (every item resolves or the compile throws) */\n  resolvedCount: number;\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Compile (rebuild) the agent's composition.\n *\n * 1. Resolves ALL items through the content source (any unresolvable item throws)\n * 2. Rejects sub-agent loops (`agent` items that compose their own ancestor)\n * 3. Bumps prompt_version (continuing a schema-1 file's counter)\n * 4. Writes compile_manifest.json atomically\n *\n * @param opts - Compile options including agentDir, items and the content source.\n * @returns A {@link CompileResult} with the written manifest.\n * @throws {CompositionError} `composition_asset_missing` / `composition_conflict` for an item that cannot be served.\n * @docLink packages/runner/capabilities#compile-composition\n */\nexport async function compileComposition(opts: CompileOpts): Promise<CompileResult> {\n  const { agentDir, items, source } = opts;\n  const manifestPath = path.join(agentDir, COMPILE_MANIFEST_FILENAME);\n\n  const nextVersion = (await readPromptVersion(manifestPath)) + 1;\n\n  const loaded = new Map<string, CompositionAsset>();\n  const entries: CompileManifestEntry[] = [];\n  const resolvedAt = new Date().toISOString();\n  for (const item of items) {\n    const binding = resolveBinding(item);\n    const cacheKey = `${item.kind}\\u0000${item.ref}`;\n    let asset = loaded.get(cacheKey);\n    if (!asset) {\n      asset = await source.load(item.ref, item.kind);\n      loaded.set(cacheKey, asset);\n    }\n    entries.push({\n      asset_ref: item.ref,\n      kind: item.kind,\n      resolved_ref: asset.canonicalRef,\n      version: asset.version,\n      hash: asset.sha256,\n      binding,\n      resolved_at: resolvedAt,\n      content: asset.content,\n    });\n  }\n\n  await assertAcyclicSubagents(agentDir, items, source);\n\n  const manifest: CompileManifest = {\n    schema_version: 2,\n    prompt_version: nextVersion,\n    entries,\n    compiled_at: new Date().toISOString(),\n  };\n\n  // Write atomically: temp file + rename to avoid corruption on interrupt\n  const tmpPath = `${manifestPath}.tmp`;\n  await fs.writeFile(tmpPath, `${JSON.stringify(manifest, null, 2)}\\n`, \"utf-8\");\n  await fs.rename(tmpPath, manifestPath);\n\n  return { manifest, manifestPath, resolvedCount: entries.length };\n}\n\n/**\n * Whether `<agentDir>/compile_manifest.json` already pins exactly what {@link compileComposition}\n * would write now: one entry per item, in order, with the ref, kind and binding of the item and\n * the hash of the bytes the content source serves today. `skaile add`/`install`/`update` compile\n * an agent only when this is `false`, so a pin that `skaile rebuild` wrote survives an install\n * and a changed lock revision gets a fresh pin (p413, p1310).\n *\n * @returns `false` when there is no pin, it is stale-schema or malformed, or any item differs.\n * @throws {CompositionError} `composition_asset_missing` / `composition_conflict` for an item the content source cannot serve.\n */\nexport async function isCompilePinCurrent(opts: CompileOpts): Promise<boolean> {\n  let pinned: CompileManifest | undefined;\n  try {\n    pinned = await loadCompileManifestFromDir(opts.agentDir);\n  } catch {\n    return false;\n  }\n  if (!pinned || pinned.entries.length !== opts.items.length) return false;\n  for (const [i, item] of opts.items.entries()) {\n    const entry = pinned.entries[i]!;\n    if (entry.asset_ref !== item.ref || entry.kind !== item.kind) return false;\n    if (entry.binding !== resolveBinding(item)) return false;\n    const asset = await opts.source.load(item.ref, item.kind);\n    if (asset.sha256 !== entry.hash) return false;\n  }\n  return true;\n}\n\n// ---------------------------------------------------------------------------\n// Reading\n// ---------------------------------------------------------------------------\n\n/**\n * Load an existing compile_manifest.json.\n *\n * @param manifestPath - Absolute path to the manifest file.\n * @returns The parsed {@link CompileManifest}, or `undefined` when the file does not exist.\n * @throws {CompositionError} `composition_rebuild_required` for a schema-1 artifact or a malformed\n *   file; `composition_conflict` when an entry's `hash` no longer matches its `content`.\n * @docLink packages/runner/capabilities#load-compile-manifest\n */\nexport async function loadCompileManifest(\n  manifestPath: string,\n): Promise<CompileManifest | undefined> {\n  let raw: string;\n  try {\n    raw = await fs.readFile(manifestPath, \"utf-8\");\n  } catch {\n    return undefined;\n  }\n\n  let json: unknown;\n  try {\n    json = JSON.parse(raw);\n  } catch {\n    throw new CompositionError(\n      \"composition_rebuild_required\",\n      \"stale_manifest\",\n      `${manifestPath} is not valid JSON — run \\`skaile rebuild\\``,\n    );\n  }\n  if (StaleSchemaMarker.safeParse(json).success) {\n    throw new CompositionError(\n      \"composition_rebuild_required\",\n      \"stale_manifest\",\n      `${manifestPath} is a schema-1 compile manifest (hashes only, no captured content) — run \\`skaile rebuild\\``,\n    );\n  }\n  const parsed = CompileManifestSchema.safeParse(json);\n  if (!parsed.success) {\n    throw new CompositionError(\n      \"composition_rebuild_required\",\n      \"stale_manifest\",\n      `${manifestPath} is malformed (${parsed.error.issues[0]?.path.join(\".\") || \"root\"}: ${parsed.error.issues[0]?.message}) — run \\`skaile rebuild\\``,\n    );\n  }\n  for (const entry of parsed.data.entries) {\n    const actual = hashContent(entry.content);\n    if (actual !== entry.hash) {\n      throw new CompositionError(\n        \"composition_conflict\",\n        \"hash_mismatch\",\n        `${manifestPath}: captured content of \"${entry.asset_ref}\" (${entry.kind}) hashes to ${actual.slice(0, 12)}… but the manifest records ${entry.hash.slice(0, 12)}… — the file was edited; run \\`skaile rebuild\\``,\n        entry.asset_ref,\n      );\n    }\n  }\n  return parsed.data as CompileManifest;\n}\n\n/**\n * Load compile manifest from an agent directory, reading the file from\n * `<agentDir>/compile_manifest.json`.\n *\n * @param agentDir - Absolute path to the agent definition directory.\n * @returns The parsed {@link CompileManifest} or `undefined` when the file does not exist.\n * @throws {CompositionError} see {@link loadCompileManifest}.\n * @docLink packages/runner/capabilities#load-compile-manifest-from-dir\n */\nexport async function loadCompileManifestFromDir(\n  agentDir: string,\n): Promise<CompileManifest | undefined> {\n  return loadCompileManifest(path.join(agentDir, COMPILE_MANIFEST_FILENAME));\n}\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/** The `prompt_version` of whatever schema the existing file is in (0 when absent/unreadable). */\nasync function readPromptVersion(manifestPath: string): Promise<number> {\n  try {\n    const parsed = JSON.parse(await fs.readFile(manifestPath, \"utf-8\"));\n    return typeof parsed?.prompt_version === \"number\" ? parsed.prompt_version : 0;\n  } catch {\n    return 0;\n  }\n}\n\nconst identityOf = (file: string): string => {\n  try {\n    return realpathSync(file);\n  } catch {\n    return file;\n  }\n};\n\n/**\n * Walk `kind: agent` items depth-first; an agent that (transitively) composes\n * itself would spawn forever, so it is a `composition_conflict`.\n */\nasync function assertAcyclicSubagents(\n  agentDir: string,\n  items: readonly AgentComposeItem[],\n  source: CompositionContentSource,\n): Promise<void> {\n  const manifestFile = path.join(agentDir, \"agent.yaml\");\n  const root = existsSync(manifestFile) ? identityOf(manifestFile) : identityOf(agentDir);\n\n  const visit = async (\n    children: readonly { kind: string; ref: string }[],\n    src: CompositionContentSource,\n    chain: readonly string[],\n  ): Promise<void> => {\n    for (const item of children) {\n      if (item.kind !== \"agent\") continue;\n      const asset = await src.load(item.ref, \"agent\");\n      const identity = asset.location ? identityOf(asset.location) : asset.canonicalRef;\n      if (chain.includes(identity)) {\n        throw new CompositionError(\n          \"composition_conflict\",\n          \"cycle\",\n          `\"${item.ref}\" (agent): sub-agent composition loops (${[...chain, identity]\n            .map((p) => path.basename(path.dirname(p)) || p)\n            .join(\" → \")})`,\n          item.ref,\n        );\n      }\n      const nested = NestedAgentComposes.safeParse(parseYamlSafe(asset.content));\n      if (!nested.success || !asset.location) continue;\n      const subagents = nested.data.composes.flatMap((c) => {\n        const parsedItem = NestedAgentItem.safeParse(c);\n        return parsedItem.success ? [parsedItem.data] : [];\n      });\n      if (subagents.length === 0) continue;\n      await visit(subagents, src.scoped(path.dirname(asset.location)), [...chain, identity]);\n    }\n  };\n\n  await visit(items, source, [root]);\n}\n\nfunction parseYamlSafe(text: string): unknown {\n  try {\n    return parseYaml(text);\n  } catch {\n    return null;\n  }\n}\n","/**\n * composition/prompt-sections.ts\n *\n * The agent part of the runner's live system prompt. It comes from the same\n * `assembleAgent` the install renderers bake the native agent file with, so\n * the two cannot disagree on order or text:\n * soul → `<MEMORY>` → fragments → constraints → duties → abilities → contracts\n * → composed → extensions.\n *\n * The runner adds only what the harness's native file does not carry\n * (`AGENT_PROMPT_CARRIERS` in core). Under claude-code and codex the file holds the\n * soul, constraints, composed blocks, memory seeds, duties and extensions, so the runner\n * adds a section only when the file lacks its exact text (a host-backed memory block, a file\n * rendered before the section was baked, no file). omp reads only `RULES.md` from its agent dir\n * and no `SOUL.md`, so for omp the runner adds the soul, memory, duties, composed blocks and\n * extensions itself.\n */\n\nimport { readFileSync } from \"node:fs\";\nimport { dirname, join } from \"node:path\";\nimport {\n  type AgentPromptSection,\n  type AgentPromptSectionsInput,\n  type AssembledAgent,\n  assembleAgent,\n  HARNESS_TARGETS,\n  harnessNameForHarnessId,\n} from \"@skaile/workspaces/core\";\nimport type { ResolvedAgentInstance } from \"./resolve-instance.js\";\n\n/** A loaded `agent.prompt-extensions` entry. */\nexport interface PromptExtensionPart {\n  value: string;\n  /** Path the extension was loaded from. */\n  source: string;\n}\n\n/** Options of {@link buildRunnerAgentSections}. */\nexport interface BuildRunnerAgentSectionsOptions {\n  /** Harness id of the session; decides what its native file carries. Default: a harness that reads the native file. */\n  harness?: string;\n  /** Text of the native agent file the harness reads (`.claude/agents/<id>.md`), when there is one. */\n  nativeFile?: string;\n}\n\n/**\n * The one input set of the agent prompt, from what {@link resolveAgentInstance} resolved: the\n * install path bakes it into the native file, `skaile run` sends it, `--print-prompt` prints it.\n *\n * @param resolved - The resolved instance, or `null` when the session has no agent definition.\n * @param promptExtensions - Loaded `agent.prompt-extensions`, in declared order.\n */\nexport function agentPromptInput(\n  resolved: ResolvedAgentInstance | null,\n  promptExtensions: readonly PromptExtensionPart[],\n): AgentPromptSectionsInput {\n  const blocks = resolved?.inlineBlocks ?? [];\n  const joined = (kind: string): string =>\n    blocks\n      .filter((block) => block.implicit && block.kind === kind)\n      .map((block) => block.content.trim())\n      .filter(Boolean)\n      .join(\"\\n\\n\");\n  return {\n    soul: joined(\"soul\"),\n    memory: resolved?.memoryBlocks ?? [],\n    duties: joined(\"prompt\"),\n    composed: blocks\n      .filter((block) => !block.implicit)\n      .map((block) => ({ text: block.content, source: block.ref })),\n    promptExtensions: promptExtensions.map((e) => ({ text: e.value, source: e.source })),\n  };\n}\n\n/**\n * Assemble the agent prompt of a run.\n *\n * @param resolved - The resolved instance, or `null` when the session has no agent definition.\n * @param promptExtensions - Loaded `agent.prompt-extensions`, in declared order.\n * @param options - Harness and native file text.\n */\nexport function assembleRunnerAgent(\n  resolved: ResolvedAgentInstance | null,\n  promptExtensions: readonly PromptExtensionPart[],\n  options: BuildRunnerAgentSectionsOptions = {},\n): AssembledAgent {\n  return assembleAgent(agentPromptInput(resolved, promptExtensions), options);\n}\n\n/**\n * Build the agent sections of the live system prompt.\n *\n * @param resolved - The resolved instance, or `null` when the session has no agent definition.\n * @param promptExtensions - Loaded `agent.prompt-extensions`, in declared order.\n * @param options - Harness and native file text.\n * @returns Non-empty sections in the shared order; join `text` with the runner's section separator.\n */\nexport function buildRunnerAgentSections(\n  resolved: ResolvedAgentInstance | null,\n  promptExtensions: readonly PromptExtensionPart[],\n  options: BuildRunnerAgentSectionsOptions = {},\n): AgentPromptSection[] {\n  return assembleRunnerAgent(resolved, promptExtensions, options).runnerSections;\n}\n\n/**\n * The path of the native agent file the harness reads for the instance `agentName`, or `undefined`\n * when the harness has none: `.claude/agents/<id>.md` for claude-code and\n * `.codex/skaile-agents/<id>.md` (the identity the codex harness reads) for codex.\n *\n * @param cwd - The harness working directory the native files were rendered into.\n * @param harness - Harness id of the session.\n * @param agentName - The instance id the file is named after.\n */\nexport function nativeAgentFilePath(\n  cwd: string,\n  harness: string | undefined,\n  agentName: string,\n): string | undefined {\n  const target = harnessNameForHarnessId(harness);\n  if (target === \"claude-code\") {\n    return join(cwd, HARNESS_TARGETS[\"claude-code\"].local.agent, `${agentName}.md`);\n  }\n  if (target === \"codex\") {\n    // The codex harness reads `skaile-agents/<id>.md` beside `agents/`.\n    return join(\n      cwd,\n      dirname(HARNESS_TARGETS.codex.local.agent),\n      \"skaile-agents\",\n      `${agentName}.md`,\n    );\n  }\n  return undefined;\n}\n\n/**\n * The text of the native agent file ({@link nativeAgentFilePath}), or `undefined` when the harness\n * has none or the file is not there.\n */\nexport function readNativeAgentFile(\n  cwd: string,\n  harness: string | undefined,\n  agentName: string,\n): string | undefined {\n  const file = nativeAgentFilePath(cwd, harness, agentName);\n  if (!file) return undefined;\n  try {\n    return readFileSync(file, \"utf-8\");\n  } catch {\n    return undefined;\n  }\n}\n"]}

package/dist/{chunk-R7422XD4.js → chunk-65SOXO7I.js}

@@ -1,13 +1,14 @@
 import { createSpinner } from './chunk-NESV47MF.js';
-import { getKindRegistry } from './chunk-HPQ2WDYC.js';
-import { logInfo, logWarn, S, logErr, TARGET_DEFAULT_HINT, logOk, colorRef, parseHarnessFilter, requireProjectConfig, agentInstanceErrorLines, reportUnknownHarnesses, deferredWarnings, warnPlaceholderBodies, warnFilesOnlyDelegates, warnStaleHarnessCopies, formatSoftDepHint, reportLegacyOmpCopies, reportProjectConfig } from './chunk-A4VKIVGB.js';
-import { loadAgentManifest, createCompositionContentSource, hashAgentFiles, isCompilePinCurrent, compileComposition, CompositionError, loadCompileManifestFromDir, verifyConventionItems, resolveAgentInstance, isCompositionError, resolveBinding } from './chunk-YLKOCMU7.js';
-import { AssetManager } from './chunk-MUQBP2BK.js';
-import { effectiveComposes } from './chunk-LCXQ4LVP.js';
-import { readLock } from './chunk-MEU2HHGV.js';
-import { agentSourceCacheDir, SourceEntryError, effectiveAgentInstances, resolveSkWorkspaceConfig, resolveAgentDefinitionDir, AgentRefResolutionError } from './chunk-BNLXZXZN.js';
+import { getKindRegistry } from './chunk-U2WPJHRA.js';
+import { logInfo, logWarn, S, logErr, TARGET_DEFAULT_HINT, logOk, colorRef, parseHarnessFilter, requireProjectConfig, agentInstanceErrorLines, reportUnknownHarnesses, deferredWarnings, warnPlaceholderBodies, warnFilesOnlyDelegates, warnStaleHarnessCopies, formatSoftDepHint, reportLegacyOmpCopies, reportProjectConfig } from './chunk-WW22FS74.js';
+import { loadAgentManifest, hashAgentFiles, verifyConventionItems, resolveAgentInstance } from './chunk-ZII54C3E.js';
+import { AssetManager } from './chunk-2JUCWMIS.js';
+import { createCompositionContentSource, isCompilePinCurrent, compileComposition, CompositionError, loadCompileManifestFromDir, isCompositionError, resolveBinding } from './chunk-4ZNKEDYH.js';
+import { readLock } from './chunk-U7P22GEB.js';
+import { agentSourceCacheDir, SourceEntryError, effectiveAgentInstances, resolveSkWorkspaceConfig, resolveAgentDefinitionDir, AgentRefResolutionError } from './chunk-BRAOB37W.js';
 import { userConfigPath, globalSkaileDir } from './chunk-L5VSIPQD.js';
-import { parseAssetRef } from './chunk-7HRZACI4.js';
+import { parseAssetRef } from './chunk-HW4BDJPC.js';
+import { effectiveComposes } from './chunk-LCXQ4LVP.js';
 import { homedir } from 'os';
 import path2 from 'path';
 import * as p from '@clack/prompts';
@@ -266,7 +267,7 @@ async function runRefInstall(ref, opts) {
   const spinner = createSpinner();
   spinner.start(`Installing ${ref}`);
   try {
-    const { openCatalogSource, openLibrary } = await import('./open-library-EVUKLOV7.js');
+    const { openCatalogSource, openLibrary } = await import('./open-library-FVV6GG4I.js');
     const catalog = await openCatalogSource({ projectDir: path2.resolve(opts.projectDir) });
     if (!supportsInstallManifest(catalog)) {
       throw new Error(
@@ -319,7 +320,7 @@ async function runYamlInstall(opts) {
   }
   if (await reportUnknownHarnesses(projectDir) > 0) process.exit(1);
   try {
-    const { ensureSourcesCloned } = await import('./ensure-sources-I7GCXPXK.js');
+    const { ensureSourcesCloned } = await import('./ensure-sources-CI3JQJST.js');
     const hydrate = ensureSourcesCloned(projectDir, { quiet: true });
     if (hydrate.cloned.length > 0) {
       logOk(`Cloned source(s): ${hydrate.cloned.join(", ")}`);
@@ -503,7 +504,10 @@ function makeCheckCommand() {
       projectDir: path2.resolve(opts.projectDir)
     });
     const { gaps } = await am.projectState();
-    const edited = await editedConventionFiles(path2.resolve(opts.projectDir));
+    const edited = [
+      ...await editedConventionFiles(path2.resolve(opts.projectDir)),
+      ...await am.staleAgentFileLines()
+    ];
     const notices = [
       ...(await am.mcpNotices()).map((n) => n.text),
       // A library that went back past the lock is no drift either (p1257).
@@ -511,7 +515,9 @@ function makeCheckCommand() {
       // A lock written before it listed the instance files: the next write replaces them.
       ...am.legacyLockNotices(),
       // An asset-named agent file an instance's file replaced: the next install removes it.
-      ...am.leftoverAgentFileNotices()
+      ...am.leftoverAgentFileNotices(),
+      // An agent whose `extends` parent is not there: said once at `add`, then here (v16-D11).
+      ...am.missingParentNotices()
     ];
     await am.probeStoreOrigins();
     const notChecked = am.takeStoreNotChecked();
@@ -654,5 +660,5 @@ function makeCleanCommand() {
 }
 
 export { REF_HINT, editedConventionFiles, globalProblems, makeCheckCommand, makeCleanCommand, makeInstallCommand, pinComposedAgents, reportAgentInstances, reportContentHeld, reportInferredHarnesses, reportInstalledSoftDeps, reportMoved, reportPresetExpansions, reportRelocked, reportReplaced, reportRewritten, reportStoreNotChecked, reportStoreNotCheckedForUpdates, runPointerOnlyInstall, runYamlInstall, supportsInstallManifest };
-//# sourceMappingURL=chunk-R7422XD4.js.map
-//# sourceMappingURL=chunk-R7422XD4.js.map
+//# sourceMappingURL=chunk-65SOXO7I.js.map
+//# sourceMappingURL=chunk-65SOXO7I.js.map

package/dist/chunk-65SOXO7I.js.map

@@ -0,0 +1 @@
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* The compile pin of the agents `skaile add` keeps under `.skaile/cache/agents/<name>/`.\n *\n * An agent that composes an `inline-snapshot` item (a persona, a ruleset, …) runs from\n * `compile_manifest.json`, so it cannot run without one. `add`, `install` and `update` pin\n * such an agent themselves, once per lock revision: a pin that still matches the bytes the\n * lock serves (one `skaile rebuild` wrote, or an earlier add/install) is left alone, and\n * `skaile rebuild` only refreshes it. `update` also re-runs the rebuild for any\n * agent that holds a pin, a convention-only agent (SOUL.md) included, because the update\n * moved the bytes the pin hashes.\n */\n\nimport { existsSync, readdirSync } from \"node:fs\";\nimport path from \"node:path\";\nimport { agentSourceCacheDir } from \"@skaile/workspaces/core\";\nimport {\n  CompositionError,\n  type CompositionContentSource,\n  compileComposition,\n  createCompositionContentSource,\n  hashAgentFiles,\n  isCompilePinCurrent,\n  loadAgentManifest,\n  loadCompileManifestFromDir,\n  resolveBinding,\n} from \"@skaile/workspaces/runner\";\nimport { type AgentComposeItem, effectiveComposes } from \"@skaile/workspaces/types/manifests\";\nimport { logInfo, logWarn } from \"./helpers.ts\";\nimport { getKindRegistry } from \"./open-registry.ts\";\n\n/**\n * Whether `run` cannot start the agent without a compile pin: it declares an `inline-snapshot`\n * item (a persona, a ruleset bound so, ...). The convention files and the other bindings read\n * their source when no pin exists, so such an agent is left unpinned until `skaile rebuild`.\n */\nfunction needsPin(composes: readonly AgentComposeItem[]): boolean {\n  try {\n    return composes.some((item) => resolveBinding(item) === \"inline-snapshot\");\n  } catch {\n    // An item of a kind that has no binding: `run` and `rebuild` name it; nothing to pin here.\n    return false;\n  }\n}\n\n/**\n * Compile every cached agent of the project that declares an `inline-snapshot` composition item\n * and has no current pin. A compile that fails (an item no library or lock serves) is a warning\n * here: `skaile check` and `skaile run` raise the same error for the agent.\n *\n * @returns The names of the agents that were compiled.\n */\nexport async function pinComposedAgents(\n  projectDir: string,\n  opts: { repin?: boolean } = {},\n): Promise<string[]> {\n  return (await pinComposedAgentsReport(projectDir, opts)).pinned;\n}\n\n/**\n * The `Missing:` line `install` prints for a composed asset the lock pins but no copy serves:\n * the same words as for a locked skill the library moved past (p1510).\n */\nfunction missingLine(err: CompositionError, agentName: string): string {\n  if (err.moved) {\n    const m = err.moved;\n    return `${m.key} (library \"${m.library}\" is at ${m.libraryVersion}, locked ${m.lockedVersion}; \\`skaile update\\` moves the lock to it)`;\n  }\n  return `${err.ref ?? agentName} (agent ${agentName}: ${err.message})`;\n}\n\n/**\n * {@link pinComposedAgents}, plus the agents `run` could not start. An agent with no usable pin\n * whose locked persona or ruleset no library copy serves any more (the library moved on, or the\n * project is a fresh clone) is a `missing` line, not a warning: `install` exits 1 for it and\n * names `skaile update`, the only command that moves the lock (p1510). An agent that still has\n * its pin keeps running from it, so a library bump alone is silent.\n */\nexport async function pinComposedAgentsReport(\n  projectDir: string,\n  opts: { repin?: boolean } = {},\n): Promise<{ pinned: string[]; missing: string[] }> {\n  const cacheDir = agentSourceCacheDir(projectDir);\n  const pinned: string[] = [];\n  const missing: string[] = [];\n  if (!existsSync(cacheDir)) return { pinned, missing };\n  for (const entry of readdirSync(cacheDir, { withFileTypes: true })) {\n    if (!entry.isDirectory()) continue;\n    const agentDir = path.join(cacheDir, entry.name);\n    const manifest = await loadAgentManifest(agentDir);\n    if (!manifest) continue;\n    const wanted = !!manifest.composes?.length && needsPin(manifest.composes);\n    // `update` re-runs the rebuild for an agent that was pinned: the pin hashes bytes it moved.\n    if (!wanted && !(opts.repin && (await hasCompilePin(agentDir)))) continue;\n    const composes = manifest.composes ?? [];\n    let items: AgentComposeItem[] = [];\n    const source = createCompositionContentSource({\n      agentDir,\n      projectDir,\n      registry: getKindRegistry(),\n    });\n    try {\n      const files = await hashAgentFiles(agentDir);\n      items = effectiveComposes(\n        composes,\n        files.map((f) => f.path),\n      );\n      if (await isCompilePinCurrent({ agentDir, items, source })) continue;\n      const result = await compileComposition({ agentDir, items, source });\n      pinned.push(entry.name);\n      logInfo(\n        `Compiled agent ${manifest.name ?? entry.name} (${result.resolvedCount} composition items) → prompt v${result.manifest.prompt_version}`,\n      );\n    } catch (err) {\n      if (err instanceof CompositionError && err.code === \"composition_asset_missing\") {\n        // The bytes the lock pins are gone, but the pin that was compiled from them still\n        // serves `run`: nothing for install to report.\n        if (await hasCompilePin(agentDir)) continue;\n        for (const line of await missingLines(items, source, err, entry.name)) {\n          if (!missing.includes(line)) missing.push(line);\n        }\n        continue;\n      }\n      const reason = err instanceof Error ? err.message : String(err);\n      const code = err && typeof err === \"object\" && \"code\" in err ? `${String(err.code)}: ` : \"\";\n      logWarn(`Could not compile agent ${entry.name}: ${code}${reason}`);\n    }\n  }\n  return { pinned, missing };\n}\n\n/** Whether the agent folder holds a readable compile pin. */\nasync function hasCompilePin(agentDir: string): Promise<boolean> {\n  try {\n    return (await loadCompileManifestFromDir(agentDir)) !== undefined;\n  } catch {\n    return false;\n  }\n}\n\n/** One line per item the source cannot serve (the compile names only the first). */\nasync function missingLines(\n  items: readonly AgentComposeItem[],\n  source: CompositionContentSource,\n  first: CompositionError,\n  agentName: string,\n): Promise<string[]> {\n  const lines = [missingLine(first, agentName)];\n  for (const item of items) {\n    try {\n      await source.load(item.ref, item.kind);\n    } catch (err) {\n      if (err instanceof CompositionError && err.code === \"composition_asset_missing\") {\n        lines.push(missingLine(err, agentName));\n      }\n    }\n  }\n  return [...new Set(lines)];\n}\n\n/**\n * The items of the agent that a rebuild could not serve because a registered library moved past\n * the version the lock pins: each error names `skaile update`, the command that moves the lock.\n * `check` prints these instead of sending the user to a `skaile rebuild` that would fail with\n * the same lines. Empty when a rebuild can read every item.\n */\nexport async function lockBehindLibraryErrors(\n  agentDir: string,\n  projectDir: string,\n): Promise<CompositionError[]> {\n  const manifest = await loadAgentManifest(agentDir);\n  if (!manifest) return [];\n  const files = await hashAgentFiles(agentDir);\n  const items = effectiveComposes(\n    manifest.composes,\n    files.map((f) => f.path),\n  );\n  const source = createCompositionContentSource({\n    agentDir,\n    projectDir,\n    registry: getKindRegistry(),\n  });\n  const out: CompositionError[] = [];\n  for (const item of items) {\n    try {\n      await source.load(item.ref, item.kind);\n    } catch (err) {\n      if (\n        err instanceof CompositionError &&\n        err.code === \"composition_asset_missing\" &&\n        err.moved\n      ) {\n        out.push(err);\n      }\n    }\n  }\n  return out;\n}\n","import { homedir } from \"node:os\";\nimport path from \"node:path\";\nimport * as p from \"@clack/prompts\";\nimport {\n  AssetManager,\n  type ContentHeld,\n  type InstalledAgentInstance,\n  type LibraryMove,\n  type ReplacedAsset,\n  type RewrittenAgent,\n} from \"@skaile/workspaces/asset-manager\";\nimport {\n  type AgentInstanceConfig,\n  AgentRefResolutionError,\n  type HarnessName,\n  effectiveAgentInstances,\n  globalSkaileDir,\n  type PresetExpansion,\n  parseAssetRef,\n  readLock,\n  resolveAgentDefinitionDir,\n  resolveSkWorkspaceConfig,\n  SourceEntryError,\n  userConfigPath,\n} from \"@skaile/workspaces/core\";\nimport {\n  isCompositionError,\n  loadAgentManifest,\n  resolveAgentInstance,\n  verifyConventionItems,\n} from \"@skaile/workspaces/runner\";\nimport type { InstallManifest } from \"@skaile/workspaces/types\";\nimport { Command } from \"commander\";\nimport {\n  colorRef,\n  requireProjectConfig,\n  formatSoftDepHint,\n  deferredWarnings,\n  logErr,\n  logInfo,\n  logOk,\n  logWarn,\n  parseHarnessFilter,\n  reportLegacyOmpCopies,\n  S,\n  TARGET_DEFAULT_HINT,\n  warnFilesOnlyDelegates,\n  warnStaleHarnessCopies,\n  warnPlaceholderBodies,\n} from \"../helpers.ts\";\nimport {\n  agentInstanceErrorLines,\n  reportProjectConfig,\n  reportUnknownHarnesses,\n} from \"../config-checks.ts\";\nimport { createSpinner } from \"../spinner.ts\";\nimport { getKindRegistry } from \"../open-registry.ts\";\nimport { lockBehindLibraryErrors, pinComposedAgentsReport } from \"../agent-pins.ts\";\n\n/**\n * Canonical asset-ref shape accepted by `skaile install <ref>`:\n * `kind:@<publisher>/<name>#<version>` (the `#` version sigil). Validated via\n * `parseAssetRef` so the CLI shares the single canonical grammar; the legacy\n * trailing-`@version` shape is rejected.\n */\nexport const REF_HINT = \"kind:@<publisher>/<name>#<version> (e.g. skill:@skaile-ai/use-exa#1.0.0)\";\n\n/** True when `ref` parses as a canonical asset ref. */\nfunction isValidAssetRef(ref: string): boolean {\n  try {\n    parseAssetRef(ref);\n    return true;\n  } catch {\n    return false;\n  }\n}\n\n/**\n * Minimal catalog-source surface the pointer-only install path needs.\n * `RemoteCatalogSource` satisfies this — narrowing keeps {@link runPointerOnlyInstall}\n * testable with a hand-rolled stub.\n */\nexport interface InstallManifestSource {\n  getInstallManifest(ref: string): Promise<InstallManifest>;\n}\n\n/**\n * Capability check: is this catalog source able to serve install manifests?\n *\n * `openCatalogSource` returns a `RemoteCatalogSource | RestCatalogSource`.\n * Only the tRPC-framed `RemoteCatalogSource` implements `getInstallManifest`;\n * the REST-framed `RestCatalogSource` (the default for any catalog URL other\n * than `https://skaile.store`) does not. Calling it unconditionally would be a\n * runtime `TypeError`, so the pointer-only install path must capability-detect\n * first and fail with a clear, actionable message.\n */\nexport function supportsInstallManifest(source: unknown): source is InstallManifestSource {\n  return (\n    typeof (source as { getInstallManifest?: unknown } | null | undefined)?.getInstallManifest ===\n    \"function\"\n  );\n}\n\n/**\n * Minimal library surface the pointer-only install path needs.\n * `LocalIndex` satisfies this.\n */\nexport interface InstallLibrary {\n  install(manifest: InstallManifest): Promise<{ installPath: string }>;\n}\n\n/**\n * Result of a pointer-only catalog install.\n */\nexport interface PointerOnlyInstallResult {\n  /** Absolute path the verified asset bytes were written to. */\n  installPath: string;\n  /** The pinned upstream commit SHA the asset was fetched at. */\n  commitSha: string;\n  /** Number of files in the install manifest. */\n  fileCount: number;\n}\n\n/**\n * Pointer-only catalog install — the `skaile install <ref>` code path.\n *\n * 1. Resolves the pointer-only {@link InstallManifest} from the Catalog.\n * 2. Hands it to the library, which fetches each file's bytes directly from\n *    the upstream repo at the pinned commit, verifies every per-file SHA256\n *    plus the composite SHA256, and only then writes the verified files.\n *\n * Both dependencies are injected so the function is unit-testable without a\n * network round-trip. In production the CLI passes a `RemoteCatalogSource`\n * and a `LocalIndex`.\n *\n * @param ref - Canonical asset ref (`kind:@<publisher>/<name>#<version>`).\n * @param deps - Injected catalog source + library.\n * @returns The install path, pinned commit SHA, and file count.\n * @throws When the ref is malformed, the manifest cannot be resolved, or any\n *   hash verification fails. The underlying error message is surfaced as-is.\n */\nexport async function runPointerOnlyInstall(\n  ref: string,\n  deps: { catalog: InstallManifestSource; library: InstallLibrary },\n): Promise<PointerOnlyInstallResult> {\n  let requested: ReturnType<typeof parseAssetRef>;\n  try {\n    requested = parseAssetRef(ref);\n  } catch (e) {\n    throw new Error(\n      `malformed asset ref '${ref}' — expected ${REF_HINT}: ${e instanceof Error ? e.message : String(e)}`,\n    );\n  }\n  const manifest = await deps.catalog.getInstallManifest(ref);\n  // [M1] Identity check: the catalog must not install a different asset than\n  // requested. Compare the PARSED refs (kind/publisher/name/pin) so equivalent\n  // spellings (optional `kind:`, default `skill`) are treated as the same ref.\n  const got = parseAssetRef(manifest.ref);\n  if (\n    got.kind !== requested.kind ||\n    got.publisher !== requested.publisher ||\n    got.name !== requested.name ||\n    got.pin !== requested.pin\n  ) {\n    throw new Error(\n      `catalog identity mismatch: requested '${ref}' but the catalog returned a manifest for '${manifest.ref}'`,\n    );\n  }\n  const { installPath } = await deps.library.install(manifest);\n  return {\n    installPath,\n    commitSha: manifest.source.commitSha,\n    fileCount: manifest.files.length,\n  };\n}\n\n/**\n * Print one summary line per `preset:` dependency `skaile install` expanded: how many\n * asset items joined the install set and how many instance items (`library://`,\n * placeholders) were skipped, which only `skaile preset apply` materialises.\n */\nexport function reportPresetExpansions(\n  presets: readonly PresetExpansion[] | undefined,\n  onLine: (line: string) => void = logInfo,\n): void {\n  for (const preset of presets ?? []) {\n    onLine(\n      `preset ${preset.ref}: ${preset.assets} assets, ${preset.skipped} instance items skipped (apply with skaile preset apply)`,\n    );\n  }\n}\n\n/**\n * Print one line per agent instance `skaile install` rendered (with the files\n * written) and one per native agent file removed because its instance left `skaile.yaml`.\n */\nexport function reportAgentInstances(\n  instances: readonly InstalledAgentInstance[] | undefined,\n  removedFiles: readonly string[] | undefined,\n  onLine: (line: string) => void = logInfo,\n  onRemoved: (line: string) => void = logWarn,\n): void {\n  for (const instance of instances ?? []) {\n    onLine(`agent ${instance.id}: ${instance.files.join(\", \")}`);\n  }\n  for (const file of removedFiles ?? []) onRemoved(`Removed: ${file}`);\n}\n\n/** One `Re-locked` line per lock entry `install`/`update` rewrote for an already-locked asset. */\nexport function reportRelocked(\n  relocked: string[] | undefined,\n  onLine: (line: string) => void = logInfo,\n): void {\n  for (const ref of relocked ?? []) onLine(`Re-locked ${ref}`);\n}\n\n/**\n * One line per locked library asset whose library holds the locked version with other bytes.\n * `install` keeps the lock and the deployed copy; only `update` takes the edit (OQ13, p1911).\n * The project does not match its library, as `check` says, so the run exits 1.\n */\nexport function reportContentHeld(\n  held: ContentHeld[] | undefined,\n  onLine: (line: string) => void = logWarn,\n): void {\n  for (const h of held ?? []) {\n    onLine(\n      `${h.ref.split(\"#\")[0]}: library \"${h.library}\" changed since lock (same version ${h.version}). Run ${S.cmd(\"skaile update\")} to take the change.`,\n    );\n    process.exitCode = 1;\n  }\n}\n\n/** One line per global entry `install --global` limited to the one harness that holds its copy (p1442). */\nexport function reportInferredHarnesses(\n  inferred: readonly { ref: string; harnesses: readonly string[] }[] | undefined,\n  onLine: (line: string) => void = logInfo,\n): void {\n  for (const i of inferred ?? []) {\n    onLine(\n      `${i.ref} stays on ${i.harnesses.join(\", \")} (its only copy); add it to another harness with \\`skaile add ${i.ref} --global --harness <id>\\``,\n    );\n  }\n}\n\n/** One `! <ref> moved from <a> to <b>` line per locked asset that now resolves from another library. */\nexport function reportMoved(\n  moved: readonly LibraryMove[] | undefined,\n  onLine: (line: string) => void = logWarn,\n): void {\n  for (const m of moved ?? []) onLine(`${m.ref} moved from ${m.from} to ${m.to}`);\n}\n\n/** One `replaced <old> → <new>` line per asset `install`/`update` moved to another locked version. */\nexport function reportReplaced(\n  replaced: readonly ReplacedAsset[] | undefined,\n  onLine: (line: string) => void = logInfo,\n): void {\n  for (const r of replaced ?? []) onLine(`${r.ref} replaced ${r.from} → ${r.to}`);\n}\n\n/** One `Rewrote <file> (agent render changed)` line per rendered agent file whose bytes the CLI's render changed. */\nexport function reportRewritten(\n  rewritten: readonly RewrittenAgent[] | undefined,\n  onLine: (line: string) => void = logInfo,\n): void {\n  for (const r of rewritten ?? []) {\n    for (const f of r.files) onLine(`Rewrote ${f} (agent render changed)`);\n  }\n}\n\n/**\n * Say which locked store assets `install`/`update` did not check against the store (p792,\n * p799). A chosen mode (air-gapped, `--no-catalog`) is one info line per asset; a store that\n * did not answer is an error line `store unreachable: could not check <ref> for updates`.\n *\n * @returns Whether any asset could not be checked because the store was unreachable: the\n *   command then ends `Failed` with exit 1.\n */\nexport function reportStoreNotChecked(\n  notChecked: readonly { ref: string; reason: string; detail: string }[] | undefined,\n): boolean {\n  let unreachable = false;\n  for (const n of notChecked ?? []) {\n    if (n.reason === \"unreachable\") {\n      unreachable = true;\n      logErr(`store unreachable: could not check ${n.ref} for updates (${n.detail})`);\n    } else if (n.reason === \"air-gapped\") {\n      logInfo(`${n.ref} kept as locked (air-gapped: not checked against the store)`);\n    } else {\n      logInfo(`${n.ref} kept as locked (${n.detail})`);\n    }\n  }\n  return unreachable;\n}\n\n/**\n * Say which refs `outdated`, `check` or `doctor` could not check against the store\n * (`AssetManager.takeStoreNotChecked`). A store that did not answer is one error\n * line per ref (`store unreachable: <ref> not checked (<why>)`); an air-gapped client\n * (`catalog.cache_ttl: 0`) chose not to ask, so its refs are one info line each.\n *\n * @returns Whether any ref was not checked because the store was unreachable: the command then\n *   exits 1, as `install` and `update` do.\n */\nexport function reportStoreNotCheckedForUpdates(\n  notChecked: readonly { ref: string; reason: string; detail: string }[],\n): boolean {\n  let unreachable = false;\n  for (const n of notChecked) {\n    if (n.reason === \"air-gapped\") {\n      logInfo(`${n.ref} not checked (air-gapped: the store was not asked)`);\n    } else {\n      unreachable = true;\n      logErr(`store unreachable: ${n.ref} not checked (${n.detail})`);\n    }\n  }\n  return unreachable;\n}\n\n/**\n * Creates the `skaile install` command.\n *\n * Two modes, selected by argument shape:\n *\n * - `skaile install` (no positional arg) — reads `skaile.yaml` and deploys all\n *   declared assets (and their transitive dependencies) to the configured\n *   harness target directory. Supports `--locked` for CI-mode install from a\n *   lock file.\n * - `skaile install kind:@<publisher>/<name>#<version>` — pointer-only catalog\n *   install: resolves the pointer-only install manifest from the configured\n *   Catalog, fetches each file's bytes directly from the upstream repo at the\n *   pinned commit, verifies every per-file + the composite SHA256, then writes\n *   the verified files into the local Library.\n *\n * @returns Configured {@link Command} ready for `program.addCommand()`.\n * @docLink cli/commands/project#make-install-command\n */\nexport function makeInstallCommand(): Command {\n  return new Command(\"install\")\n    .description(`Install dependencies from skaile.yaml, or a single asset by ref (${REF_HINT})`)\n    .argument(\"[ref]\", `Asset ref to install from the Catalog (${REF_HINT})`)\n    .option(\"--locked\", \"Install from lock file (CI mode — fails on drift)\")\n    .option(\"--project-dir <path>\", \"Project directory\", process.cwd())\n    .option(\"--target <agent>\", `Agent framework (${TARGET_DEFAULT_HINT})`)\n    .option(\n      \"--global\",\n      \"Install the global SSOT (~/.skaile/skaile.yaml), fanning out to every global harness\",\n    )\n    .option(\n      \"--harness <ids>\",\n      \"Comma-separated global harnesses to install into (default: all resolved); implies --global\",\n    )\n    .option(\n      \"--link\",\n      \"symlink local-path assets instead of copying (dev loop; machine-local, not for committing)\",\n    )\n    .option(\n      \"--force\",\n      \"Deploy over a folder no lock entry owns (a hand-made skill of the same name), and prune an undeclared asset whose folder holds your edits, instead of refusing\",\n    )\n    .option(\n      \"--verbose\",\n      \"also print the resolver's searched directories for an agent it cannot find\",\n    )\n    .action(runInstallCommand);\n}\n\n/** Options shape accepted by the `skaile install` command action. */\nexport interface InstallCommandOptions {\n  locked?: boolean;\n  projectDir: string;\n  target?: string;\n  global?: boolean;\n  harness?: string;\n  link?: boolean;\n  force?: boolean;\n  verbose?: boolean;\n}\n\n/**\n * `skaile install` action body. Dispatches by argument shape:\n * a positional `ref` selects pointer-only catalog install, otherwise the\n * legacy `skaile.yaml` install path runs.\n */\nasync function runInstallCommand(\n  ref: string | undefined,\n  opts: InstallCommandOptions,\n): Promise<void> {\n  // ── Pointer-only catalog install: `skaile install <ref>` ──────────────\n  if (ref !== undefined) {\n    await runRefInstall(ref, opts);\n    return;\n  }\n\n  // ── Legacy install: `skaile install` reads skaile.yaml ────────────────\n  await runYamlInstall(opts);\n}\n\n/** Pointer-only catalog install path for `skaile install <ref>`. */\nasync function runRefInstall(ref: string, opts: InstallCommandOptions): Promise<void> {\n  if (!isValidAssetRef(ref)) {\n    logErr(`malformed asset ref '${ref}' — expected ${REF_HINT}`);\n    process.exit(1);\n  }\n  // The store installs one exact version; without `#<version>` it answers a bare 400, so say\n  // what is missing before the call.\n  if (!parseAssetRef(ref).pin) {\n    logErr(\n      `${ref} needs a version: use ${ref}#<version>. A library asset is deployed with \\`skaile add ${ref}\\`, not \\`skaile install\\`.`,\n    );\n    process.exit(1);\n  }\n  const spinner = createSpinner();\n  spinner.start(`Installing ${ref}`);\n  try {\n    const { openCatalogSource, openLibrary } = await import(\"../open-library.ts\");\n    const catalog = await openCatalogSource({ projectDir: path.resolve(opts.projectDir) });\n    // [H2] REST-framed catalogs (the default for any catalog URL other\n    // than https://skaile.store) cannot serve install manifests. Detect\n    // and fail clearly rather than throwing a runtime TypeError.\n    if (!supportsInstallManifest(catalog)) {\n      throw new Error(\n        \"pointer-only install (skaile install <ref>) requires a tRPC-framed Catalog. \" +\n          \"The configured catalog uses REST framing, which does not serve install \" +\n          \"manifests. Set catalog.url to https://skaile.store, or catalog.framing: trpc, \" +\n          `in ${userConfigPath()}.`,\n      );\n    }\n    const library = await openLibrary();\n    try {\n      const result = await runPointerOnlyInstall(ref, { catalog, library });\n      spinner.stop(\"Done\");\n      logOk(`Installed ${colorRef(ref)}`);\n      logInfo(`Path: ${S.dim(result.installPath)}`);\n      logInfo(`Commit: ${S.dim(result.commitSha)}`);\n      logInfo(`Files: ${S.dim(String(result.fileCount))}`);\n      logInfo(\n        S.dim(\n          `Installed globally (see Path above) — use \\`skaile add ${ref}\\` to deploy into this project.`,\n        ),\n      );\n    } finally {\n      library.close();\n    }\n  } catch (err) {\n    spinner.stop(\"Failed\");\n    const msg = err instanceof Error ? err.message : String(err);\n    if (/failed: 404\\b/.test(msg)) {\n      logErr(\n        `${ref} is not in the store. For a library asset use \\`skaile add ${ref.replace(/#.*$/, \"\")}\\`.`,\n      );\n    } else if (/unreachable/i.test(msg)) {\n      logErr(`asset uninstallable — source commit no longer available (${msg})`);\n    } else {\n      logErr(msg);\n    }\n    process.exit(1);\n  }\n}\n\n/** Legacy install path for bare `skaile install` (reads skaile.yaml). Also runs `skaile harness set`. */\nexport async function runYamlInstall(opts: InstallCommandOptions): Promise<void> {\n  const projectDir = path.resolve(opts.projectDir);\n\n  const harnesses = parseHarnessFilter(opts.harness);\n  // `--harness` implies `--global`.\n  if (opts.global || harnesses) {\n    await runGlobalInstall(opts, harnesses);\n    return;\n  }\n\n  // A project without a readable skaile.yaml stops here, before sources are cloned, assets\n  // are deployed or undeployed, or the lock is written.\n  requireProjectConfig(projectDir);\n\n  // Refuse what `validate` rejects for the `agents:` map, before anything is written (p1512).\n  const instanceErrors = agentInstanceErrorLines(projectDir);\n  if (instanceErrors.length > 0) {\n    for (const line of instanceErrors) logErr(line);\n    process.exit(1);\n  }\n  // A `harness:` nothing registers fails as in `validate` and `check` (p1754).\n  if ((await reportUnknownHarnesses(projectDir)) > 0) process.exit(1);\n\n  // Hydrate sources declared in skaile.yaml before resolving assets, so\n  // freshly checked-out projects pull their source clones automatically.\n  try {\n    const { ensureSourcesCloned } = await import(\"../ensure-sources.ts\");\n    const hydrate = ensureSourcesCloned(projectDir, { quiet: true });\n    if (hydrate.cloned.length > 0) {\n      logOk(`Cloned source(s): ${hydrate.cloned.join(\", \")}`);\n    }\n    if (hydrate.failed.length > 0) {\n      logErr(`Failed to clone source(s): ${hydrate.failed.join(\", \")}`);\n    }\n  } catch (err) {\n    logWarn(`source hydration skipped: ${err instanceof Error ? err.message : String(err)}`);\n  }\n\n  const warnings = deferredWarnings();\n  const am = new AssetManager({\n    registry: getKindRegistry(),\n    projectDir,\n    harness: opts.target as HarnessName,\n    onLibraryCollision: warnings.push,\n  });\n  const spinner = createSpinner();\n  spinner.start(opts.locked ? \"Installing from lock file\" : \"Installing dependencies\");\n  try {\n    const result = await am.install({ locked: opts.locked, link: opts.link, force: opts.force });\n    const storeUnreachable = result.storeNotChecked?.some((n) => n.reason === \"unreachable\");\n    spinner.stop(\n      result.agentInstanceErrors?.length ||\n        result.missing.length > 0 ||\n        storeUnreachable ||\n        result.contentHeld?.length\n        ? \"Failed\"\n        : \"Done\",\n    );\n    warnings.flush();\n    if (result.deployed.length > 0) {\n      for (const d of result.deployed) logOk(d);\n    }\n    warnPlaceholderBodies(result.placeholderBodies, result.placeholderDescriptions);\n    for (const r of result.restored ?? []) {\n      for (const f of r.restored) logInfo(`Restored ${f}`);\n      for (const f of r.removed) logInfo(`Removed ${f} (not part of ${r.ref})`);\n    }\n    reportRewritten(result.rewritten);\n    for (const line of result.libraryNotices ?? []) logInfo(line);\n    reportPresetExpansions(result.presets);\n    reportAgentInstances(result.agentInstances, result.agentFilesRemoved);\n    // Said when this install wrote an agent file (a fresh clone, a changed agent), not when it only\n    // restored a skill or did nothing (p1673).\n    if (\n      result.deployed.some((d) => d.startsWith(\"agent:\")) ||\n      result.replaced?.some((r) => r.ref.startsWith(\"agent:\")) ||\n      result.agentInstancesChanged?.length\n    ) {\n      warnFilesOnlyDelegates(am.projectDir, am.harness);\n    }\n    if (result.removed.length > 0) {\n      for (const r of result.removed) logWarn(`Removed: ${r}`);\n    }\n    reportReplaced(result.replaced);\n    reportRelocked(result.relocked);\n    reportMoved(result.moved);\n    reportContentHeld(result.contentHeld);\n    const pins = await pinComposedAgentsReport(projectDir);\n    const missing = [...result.missing, ...pins.missing];\n    if (\n      result.deployed.length === 0 &&\n      result.removed.length === 0 &&\n      !result.replaced?.length &&\n      missing.length === 0 &&\n      !result.storeNotChecked?.length &&\n      !result.restored?.length &&\n      !result.relocked?.length &&\n      !result.contentHeld?.length &&\n      !result.moved?.length &&\n      !result.agentInstanceErrors?.length\n    ) {\n      logInfo(\"Nothing to install (already up to date).\");\n    }\n    if (result.agentInstanceErrors?.length) {\n      if (opts.verbose) for (const d of result.agentInstanceDetails ?? []) logInfo(S.dim(d));\n      logErr(\n        `${result.agentInstanceErrors.length} agent instance(s) could not be rendered (see above)`,\n      );\n      process.exitCode = 1;\n    }\n    if (missing.length > 0) {\n      for (const m of missing) logErr(`Missing: ${m}${result.missingHints?.[m] ?? \"\"}`);\n      // Partial-miss must fail the process — CI can't otherwise distinguish a\n      // clean install from \"half the assets never resolved\".\n      process.exitCode = 1;\n    }\n    if (reportStoreNotChecked(result.storeNotChecked)) process.exitCode = 1;\n    // A ref that only resolved once the assets were installed (a catalog agent) is checked now.\n    const lateInstanceErrors = agentInstanceErrorLines(projectDir);\n    for (const line of lateInstanceErrors) logErr(line);\n    if (lateInstanceErrors.length > 0) process.exitCode = 1;\n    if (result.lockWritten) {\n      logInfo(`Lock file written: ${S.dim(\"skaile.lock.yaml\")}`);\n    }\n    warnStaleHarnessCopies(am);\n    // Report-only: surface soft deps the declared assets reference but aren't\n    // present. Never a prompt — install is a batch/CI path. Skipped under\n    // --locked: that mode is \"restore exactly\", so an `add` nudge would jar.\n    if (!opts.locked) await reportInstalledSoftDeps(am);\n  } catch (err) {\n    spinner.stop(\"Failed\");\n    logErr(err instanceof SourceEntryError ? err.message : String(err));\n    process.exit(1);\n  }\n}\n\n/**\n * Report (never prompt) the body-link soft deps that the declared assets\n * reference but that aren't in the project — the `install` counterpart to the\n * `add`-time soft-dep surface. `install` is a batch/CI path (often non-TTY), so\n * it only ever prints a hint: pulling stays an explicit `skaile add`. Best-effort\n * — `reportSoftDeps` swallows any index failure and returns `[]`.\n */\nexport async function reportInstalledSoftDeps(\n  am: Pick<AssetManager, \"listDeclared\" | \"reportSoftDeps\">,\n  onHint: (line: string) => void = (l) => logInfo(S.dim(l)),\n): Promise<void> {\n  try {\n    const declared = (await am.listDeclared()).map((d) => d.ref);\n    if (declared.length === 0) return;\n    const edges = await am.reportSoftDeps(declared);\n    for (const edge of edges) onHint(formatSoftDepHint(edge));\n  } catch {\n    // Best-effort: a soft-dep report must never fail an install that succeeded.\n  }\n}\n\n/**\n * Global cross-harness install: deploy every dep declared in the global SSOT\n * (`~/.skaile/skaile.yaml`) into each resolved global harness's dir under `~`,\n * write the global lock (`~/.skaile/skaile.lock.yaml`), then print per-harness\n * state. `harnesses` is the `--harness` filter (omit for the full resolved set).\n */\nasync function runGlobalInstall(\n  opts: InstallCommandOptions,\n  harnesses: HarnessName[] | undefined,\n): Promise<void> {\n  const am = new AssetManager({\n    registry: getKindRegistry(),\n    projectDir: path.resolve(opts.projectDir),\n    global: true,\n    harnesses,\n  });\n  const spinner = createSpinner();\n  spinner.start(\"Installing global dependencies\");\n  try {\n    const result = await am.install({ locked: opts.locked, link: opts.link, force: opts.force });\n    const storeUnreachable = result.storeNotChecked?.some((n) => n.reason === \"unreachable\");\n    spinner.stop(\n      result.missing.length > 0 || storeUnreachable || result.contentHeld?.length\n        ? \"Failed\"\n        : \"Done\",\n    );\n    if (result.deployed.length > 0) for (const d of result.deployed) logOk(d);\n    warnPlaceholderBodies(result.placeholderBodies, result.placeholderDescriptions);\n    reportPresetExpansions(result.presets);\n    if (result.removed.length > 0) for (const r of result.removed) logWarn(`Removed: ${r}`);\n    reportReplaced(result.replaced);\n    reportRelocked(result.relocked);\n    reportInferredHarnesses(result.inferredHarnesses);\n    reportMoved(result.moved);\n    reportContentHeld(result.contentHeld);\n    if (\n      result.deployed.length === 0 &&\n      result.removed.length === 0 &&\n      !result.replaced?.length &&\n      result.missing.length === 0 &&\n      !result.storeNotChecked?.length &&\n      !result.relocked?.length &&\n      !result.contentHeld?.length &&\n      !result.moved?.length\n    )\n      logInfo(\"Nothing to install (already up to date).\");\n    if (reportStoreNotChecked(result.storeNotChecked)) process.exitCode = 1;\n    if (result.missing.length > 0) {\n      for (const m of result.missing) logErr(`Missing: ${m}${result.missingHints?.[m] ?? \"\"}`);\n      process.exitCode = 1;\n    }\n    if (result.lockWritten) logInfo(`Global lock written: ${S.dim(\"~/.skaile/skaile.lock.yaml\")}`);\n    reportLegacyOmpCopies(am.takeLegacyCopiesRemoved(), am.takeLegacyCopiesKept());\n\n    // Per-harness reconciliation summary so a partial fan-out is visible.\n    const state = am.globalState({});\n    const byHarness = new Map<string, number>();\n    for (const s of state)\n      if (s.state === \"installed\") byHarness.set(s.harness, (byHarness.get(s.harness) ?? 0) + 1);\n    for (const [harness, n] of byHarness) logInfo(`${harness}: ${n} installed`);\n  } catch (err) {\n    spinner.stop(\"Failed\");\n    logErr(String(err));\n    process.exit(1);\n  }\n}\n\n/** The `--global` options of `check`, `doctor` and `clean`. */\ninterface GlobalScopeOptions {\n  global?: boolean;\n  harness?: string;\n  projectDir: string;\n}\n\n/** A manager over the user-scope SSOT (`~/.skaile`), limited to `--harness` when given. */\nfunction globalManager(opts: GlobalScopeOptions): AssetManager {\n  return new AssetManager({\n    registry: getKindRegistry(),\n    projectDir: path.resolve(opts.projectDir),\n    global: true,\n    harnesses: parseHarnessFilter(opts.harness),\n  });\n}\n\n/**\n * What is wrong with the global install: one line per declared asset a harness does not hold\n * (`list --global` calls these `declared` and `drift`), per invalid entry, and per old\n * `~/.omp/<dir>` copy a 5.12.0 install left behind. Empty when the global state is clean (p911).\n */\nexport function globalProblems(am: AssetManager): string[] {\n  const lines = new Set<string>();\n  for (const row of am.globalState({})) {\n    if (row.state === \"declared\") {\n      lines.add(\n        `${row.ref} is declared in ~/.skaile/skaile.yaml but not installed: run skaile install --global`,\n      );\n    } else if (row.state === \"drift\") {\n      lines.add(\n        `${row.ref} is missing from ${row.harness}: run skaile install --global --harness ${row.harness}`,\n      );\n    } else if (row.state === \"invalid\") {\n      lines.add(`${row.ref} in ~/.skaile/skaile.yaml is not a valid asset ref`);\n    }\n  }\n  for (const stale of am.staleLegacyOmpCopies()) {\n    lines.add(\n      `${stale.path.replace(homedir(), \"~\")} is an old omp copy of ${stale.ref} (omp reads ~/.omp/agent): run skaile install --global --harness omp, or delete it`,\n    );\n  }\n  return [...lines];\n}\n\n/**\n * Creates the `skaile check` command.\n *\n * Fails (exit 1) on every problem {@link AssetManager.projectState} reports: unmet\n * requirements of deployed assets, a declared dep that never resolved into the lock (its\n * library or source is gone, like `skaile list` showing it as `declared`) or never\n * materialized (e.g. a store-sourced `mcp-server`, #462), a locked asset whose library is\n * gone or whose deployed copy or files are missing, a locked library asset whose files\n * changed since the lock (or whose lock hash predates the shared asset hash), and an\n * `agents.<id>.ref` that binds to no agent. `doctor`, `outdated`, `diff` and\n * `install --locked` take their verdict from the same state.\n *\n * @returns Configured {@link Command} ready for `program.addCommand()`.\n * @docLink cli/commands/project#make-check-command\n */\nexport function makeCheckCommand(): Command {\n  return new Command(\"check\")\n    .description(\"Check for unmet requirements\")\n    .option(\"--project-dir <path>\", \"Project directory\", process.cwd())\n    .option(\"--global\", \"Check the global install (~/.skaile) instead of the project\")\n    .option(\"--harness <ids>\", \"With --global: only these harnesses (comma-separated)\")\n    .action(async (opts) => {\n      if (opts.global || opts.harness) {\n        const problems = globalProblems(globalManager({ ...opts, global: true }));\n        if (problems.length === 0) {\n          logOk(\"All global dependencies satisfied.\");\n          return;\n        }\n        for (const line of problems) logErr(line);\n        process.exit(1);\n      }\n      requireProjectConfig(opts.projectDir);\n      // A mistyped key warns; a `harness:` nothing registers fails like a gap (p1474, p1022).\n      const configErrors = await reportProjectConfig(path.resolve(opts.projectDir), {\n        harness: true,\n        instances: true,\n      });\n      const am = new AssetManager({\n        registry: getKindRegistry(),\n        projectDir: path.resolve(opts.projectDir),\n      });\n      const { gaps } = await am.projectState();\n      // A native agent file rendered from inputs that changed since (an edited `DUTIES.md`, a\n      // local ruleset) is drift too: `install` renders it again, and so does the next run.\n      const edited = [\n        ...(await editedConventionFiles(path.resolve(opts.projectDir))),\n        ...(await am.staleAgentFileLines()),\n      ];\n      // A skipped `mcp-server` or an unset required field fails nothing: a `!` line each.\n      const notices = [\n        ...(await am.mcpNotices()).map((n) => n.text),\n        // A library that went back past the lock is no drift either (p1257).\n        ...(await am.libraryOlderNotices()),\n        // A lock written before it listed the instance files: the next write replaces them.\n        ...am.legacyLockNotices(),\n        // An asset-named agent file an instance's file replaced: the next install removes it.\n        ...am.leftoverAgentFileNotices(),\n        // An agent whose `extends` parent is not there: said once at `add`, then here (v16-D11).\n        ...am.missingParentNotices(),\n      ];\n      // A store-origin ref the store could not be asked about is not \"satisfied\".\n      await am.probeStoreOrigins();\n      const notChecked = am.takeStoreNotChecked();\n      const storeUnreachable = notChecked.some((n) => n.reason === \"unreachable\");\n      if (gaps.length === 0 && edited.length === 0 && configErrors === 0 && !storeUnreachable) {\n        logOk(\"All dependencies satisfied.\");\n        for (const n of notices) logWarn(n);\n        reportStoreNotCheckedForUpdates(notChecked);\n      } else {\n        for (const g of gaps) logErr(g.message);\n        for (const e of edited) logErr(e);\n        for (const n of notices) logWarn(n);\n        reportStoreNotCheckedForUpdates(notChecked);\n        process.exit(1);\n      }\n    });\n}\n\n/**\n * One message per convention file (SOUL.md, knowledge/, …) of a bound agent that was edited\n * after `skaile rebuild` pinned it: the compile manifest, not the file, is what the agent\n * runs from, so the edit never reaches it. Also one message per bound agent that `skaile run`\n * would refuse with `composition_rebuild_required` (an `inline-snapshot` item with no compile\n * pin, or a pin that is stale or malformed), in the words `run` prints (p1310). Instances bound\n * to the same agent directory share the files, so one message names every instance that runs\n * from them. A binding that resolves to no agent is a `projectState` gap, not reported here.\n * Shared by `check` and `doctor`.\n */\nexport async function editedConventionFiles(projectDir: string): Promise<string[]> {\n  const instances = effectiveAgentInstances(resolveSkWorkspaceConfig(projectDir));\n  const byDir = new Map<string, { ref: string; ids: string[]; instance: AgentInstanceConfig }>();\n  for (const [id, instance] of Object.entries(instances)) {\n    let agentDir: string | undefined;\n    try {\n      agentDir = resolveAgentDefinitionDir(projectDir, instance.ref);\n    } catch (err) {\n      if (err instanceof AgentRefResolutionError) continue;\n      throw err;\n    }\n    if (!agentDir) continue;\n    if (path.basename(agentDir) === \"agent.yaml\") agentDir = path.dirname(agentDir);\n    const bound = byDir.get(agentDir);\n    if (bound) bound.ids.push(id);\n    else byDir.set(agentDir, { ref: instance.ref, ids: [id], instance });\n  }\n  const messages: string[] = [];\n  for (const [agentDir, { ref, ids, instance }] of byDir) {\n    const label = `${ids.length === 1 ? \"instance\" : \"instances\"} ${ids.join(\", \")}`;\n    try {\n      const drifted = await verifyConventionItems({\n        agentDir,\n        projectDir,\n        registry: getKindRegistry(),\n      });\n      for (const err of drifted) messages.push(`${ref} (${label}): ${err.message}`);\n      const manifest = await loadAgentManifest(agentDir);\n      if (manifest) {\n        await resolveAgentInstance({\n          instanceId: ids[0]!,\n          instance,\n          asset: { manifest, dir: agentDir },\n          projectDir,\n          registry: getKindRegistry(),\n          host: { nativeSubagents: true },\n          dryRun: true,\n        });\n      }\n    } catch (err) {\n      if (!isCompositionError(err)) throw err;\n      // Only the error `run` raises for a missing pin; other composition errors are not `check`'s.\n      if (err.code === \"composition_rebuild_required\") {\n        // A lock behind the library (a fresh clone after a persona bump): `rebuild` would fail\n        // on it, so name `update` here, the same line `rebuild` and `install` give.\n        const behind = await lockBehindLibraryErrors(agentDir, projectDir);\n        if (behind.length > 0) {\n          for (const e of behind) {\n            messages.push(`${ref} (${label}): ${e.code}: ${e.message}`);\n          }\n        } else {\n          messages.push(`${ref} (${label}): ${err.code}: ${err.message}`);\n        }\n      }\n    }\n  }\n  return messages;\n}\n\n/**\n * Creates the `skaile clean` command.\n *\n * Removes all skaile-managed assets tracked in `skaile.lock.yaml` from the\n * workspace. With `--all` also removes history, patches, repos, and the lock\n * file itself. Preserves unmanaged (manually placed) assets.\n *\n * @returns Configured {@link Command} ready for `program.addCommand()`.\n * @docLink cli/commands/project#make-clean-command\n */\nexport function makeCleanCommand(): Command {\n  return new Command(\"clean\")\n    .description(\"Remove all skaile-managed assets from the workspace\")\n    .option(\"--all\", \"Full reset: also remove history, patches, repos, and lock file\")\n    .option(\"--dry-run\", \"Show what would be removed without doing it\")\n    .option(\"-y, --yes\", \"Skip confirmation prompt\")\n    .option(\"--project-dir <path>\", \"Project directory\", process.cwd())\n    .option(\"--target <agent>\", `Agent framework (${TARGET_DEFAULT_HINT})`)\n    .option(\"--global\", \"Clean the global install (~/.skaile and every global harness)\")\n    .option(\"--harness <ids>\", \"With --global: only these harnesses (comma-separated)\")\n    .action(async (opts) => {\n      const isGlobal = Boolean(opts.global || opts.harness);\n      // A skaile.yaml that does not parse stops `clean` with one `✗` line (p910).\n      if (!isGlobal) requireProjectConfig(opts.projectDir, { allowMissing: true });\n      const am = isGlobal\n        ? globalManager({ ...opts, global: true })\n        : new AssetManager({\n            registry: getKindRegistry(),\n            projectDir: path.resolve(opts.projectDir),\n            harness: opts.target as HarnessName,\n          });\n\n      // Preview: load lock file to show what will be cleaned\n      const lock = readLock(\n        isGlobal\n          ? path.join(globalSkaileDir(), \"skaile.lock.yaml\")\n          : path.resolve(opts.projectDir, \"skaile.lock.yaml\"),\n      );\n\n      if (!lock || Object.keys(lock.assets).length === 0) {\n        logInfo(\"Nothing to clean (no skaile-managed assets found).\");\n        return;\n      }\n\n      const assetRefs = Object.keys(lock.assets);\n      console.log();\n      console.log(`  ${S.heading(\"Assets to remove:\")} ${S.dim(`(${assetRefs.length})`)}`);\n      for (const ref of assetRefs) {\n        console.log(`    ${colorRef(ref)}`);\n      }\n\n      if (opts.all) {\n        console.log();\n        console.log(`  ${S.heading(\"Also removing:\")}`);\n        if (!isGlobal) {\n          console.log(`    ${S.dim(\".skaile/history.yaml\")}`);\n          console.log(`    ${S.dim(\".skaile/patches/\")}`);\n        }\n        console.log(`    ${S.dim(isGlobal ? \"~/.skaile/skaile.lock.yaml\" : \"skaile.lock.yaml\")}`);\n      }\n\n      if (opts.dryRun) {\n        console.log();\n        logInfo(\"Dry run — no changes made.\");\n        return;\n      }\n\n      if (!opts.yes) {\n        // A prompt without a terminal never resolves: refuse and name the flag.\n        if (!process.stdin.isTTY) {\n          logErr(\"Not a terminal: pass --yes to confirm. Nothing was removed.\");\n          process.exit(1);\n        }\n        const confirm = await p.confirm({ message: \"Proceed?\" });\n        if (p.isCancel(confirm) || !confirm) {\n          logInfo(\"Cancelled.\");\n          return;\n        }\n      }\n\n      const result = am.clean({ all: opts.all });\n\n      console.log();\n      for (const r of result.removed) {\n        logOk(`Removed ${r}`);\n      }\n      for (const s of result.skipped) {\n        logWarn(`Skipped ${s.ref}: ${s.reason}`);\n      }\n      if (result.unmanaged.length > 0) {\n        console.log();\n        logInfo(`Kept ${result.unmanaged.length} unmanaged asset(s):`);\n        for (const u of result.unmanaged) {\n          console.log(`    ${S.dim(u)}`);\n        }\n      }\n      if (opts.all) {\n        console.log();\n        logOk(\"Full reset complete.\");\n      }\n    });\n}\n"]}

package/dist/{chunk-YDMZWVZN.js → chunk-6KV34G6A.js}

@@ -1,14 +1,14 @@
 import { initTelemetry } from './chunk-4R6DROGN.js';
-import { parseSkillFrontmatter, validateFlowVersions } from './chunk-KOI7QFDH.js';
-import { FlowAdapter, SessionNodeExecutor, SessionSubpromptRunner, SessionInlineSubFlowRunner, driveOrchestratorTurn } from './chunk-6VQW2X2F.js';
-import { loadFlow, flowLookupRoots, findFlowFileInRoots, FLOW_FILE_EXTENSIONS } from './chunk-WDG5IVEA.js';
+import { parseSkillFrontmatter, validateFlowVersions } from './chunk-M7XIYHWB.js';
+import { FlowAdapter, SessionNodeExecutor, SessionSubpromptRunner, SessionInlineSubFlowRunner, driveOrchestratorTurn } from './chunk-QUIK7L3Z.js';
+import { loadFlow, flowLookupRoots, findFlowFileInRoots, FLOW_FILE_EXTENSIONS } from './chunk-2ZDZJ7XQ.js';
 import { renderStimulusPrompt } from './chunk-WD3L5QSU.js';
 import { flowSkillVersionPins } from './chunk-7RGTAEG6.js';
-import { resolveSettings } from './chunk-MEU2HHGV.js';
+import { resolveSettings } from './chunk-U7P22GEB.js';
 import { DEFAULT_HARNESS_ID } from './chunk-C5HFK34M.js';
 import { findKindDirs } from './chunk-MWXYN6NY.js';
-import { resolveAgentDir, resolveSkWorkspaceConfig } from './chunk-BNLXZXZN.js';
-import { isValidAssetName } from './chunk-7HRZACI4.js';
+import { resolveAgentDir, resolveSkWorkspaceConfig } from './chunk-BRAOB37W.js';
+import { isValidAssetName } from './chunk-HW4BDJPC.js';
 import { createLogger } from './chunk-BOFL7GIF.js';
 import fs from 'fs';
 import path from 'path';
@@ -537,5 +537,5 @@ function walkForSkill(dir, skillId) {
 }
 
 export { awaitAgentEnd, resolveFlowPath, resumeFlow, runFlow };
-//# sourceMappingURL=chunk-YDMZWVZN.js.map
-//# sourceMappingURL=chunk-YDMZWVZN.js.map
+//# sourceMappingURL=chunk-6KV34G6A.js.map
+//# sourceMappingURL=chunk-6KV34G6A.js.map