@skaile/workspaces 5.8.0 → 5.10.0

package/dist/chunk-Y34MSWEZ.js.map

@@ -0,0 +1 @@
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* Deadline guards for filesystem work that can land on a network mount.\n *\n * Inside the agent container `/skaile/workspace` **is** an rclone FUSE mount\n * (SharePoint / OneDrive / WebDAV). When the host rclone process wedges, a\n * filesystem call against that path parks in an uninterruptible kernel wait.\n * A **synchronous** call there stops the entire single-threaded event loop —\n * the whole `skaile serve` process stops serving, and the platform reads the\n * session as dead or idle. A hang is not an error, so `try/catch` never fires.\n *\n * Two rules follow, and both matter:\n *\n * 1. **Never touch a mount synchronously.** Async `node:fs/promises` keeps the\n *    loop free, so a wedged mount degrades to one stuck request instead of a\n *    dead session. This is the actual fix.\n * 2. **Bound the wait.** {@link withFsDeadline} converts an unbounded wait into\n *    a bounded failure so the requester gets an error rather than nothing.\n *\n * `withFsDeadline` does **not** cancel the underlying operation — Node cannot\n * abort a syscall already in the kernel. The losing promise stays pending until\n * the mount recovers or the process exits. That is acceptable precisely because\n * rule 1 holds: a pending promise costs one handle, not the event loop.\n *\n * Modelled on `connectors/src/fleet-utils.ts` (`ensureFleetMounted`), which\n * already does async-stat-with-deadline correctly.\n */\n\n/** Default deadline for a single filesystem operation on a possibly-networked mount. */\nexport const DEFAULT_FS_DEADLINE_MS = 15_000;\n\n/**\n * Env override for {@link DEFAULT_FS_DEADLINE_MS}, in milliseconds.\n *\n * A cloud-backed mount over a slow link can legitimately need longer than the\n * default; operators raise this rather than patching call sites.\n */\nexport const FS_DEADLINE_ENV_VAR = \"SKAILE_FS_DEADLINE_MS\";\n\n/**\n * Thrown when a filesystem operation misses its deadline.\n *\n * Distinct from a plain `Error` so callers can tell \"the mount is wedged\" apart\n * from \"the file does not exist\" and surface the right message to the frontend.\n */\nexport class FsDeadlineError extends Error {\n  readonly timeoutMs: number;\n  readonly operation: string;\n\n  constructor(operation: string, timeoutMs: number) {\n    super(\n      `filesystem operation \"${operation}\" exceeded ${timeoutMs}ms — the mount may be unresponsive`,\n    );\n    this.name = \"FsDeadlineError\";\n    this.operation = operation;\n    this.timeoutMs = timeoutMs;\n  }\n}\n\n/**\n * Resolve the effective filesystem deadline.\n *\n * Reads {@link FS_DEADLINE_ENV_VAR} on every call rather than caching it: the\n * runner mutates `process.env` while wiring a session, so a module-load-time\n * snapshot would pin the value set before configuration ran.\n *\n * @param fallback - Deadline to use when the env var is absent or unusable.\n * @returns The deadline in milliseconds.\n */\nexport function fsDeadlineMs(fallback: number = DEFAULT_FS_DEADLINE_MS): number {\n  const raw = process.env[FS_DEADLINE_ENV_VAR];\n  if (raw === undefined) return fallback;\n  const parsed = Number.parseInt(raw, 10);\n  // A non-positive or non-numeric override would disable the guard entirely,\n  // which is exactly the failure mode this module exists to prevent.\n  return Number.isFinite(parsed) && parsed > 0 ? parsed : fallback;\n}\n\n/**\n * Run an async filesystem operation under a deadline.\n *\n * @param operation - Short label used in the timeout message (e.g. `\"readdir /skaile/workspace\"`).\n * @param fn - Thunk performing the operation. Called immediately.\n * @param timeoutMs - Deadline override; defaults to {@link fsDeadlineMs}.\n * @returns The operation's result.\n * @throws {FsDeadlineError} when the deadline elapses first.\n * @throws Whatever `fn` rejects with, unchanged, when it loses no race.\n * @docLink packages/core/api-reference#with-fs-deadline\n */\nexport async function withFsDeadline<T>(\n  operation: string,\n  fn: () => Promise<T>,\n  timeoutMs: number = fsDeadlineMs(),\n): Promise<T> {\n  let timer: ReturnType<typeof setTimeout> | undefined;\n  try {\n    return await Promise.race([\n      fn(),\n      new Promise<never>((_resolve, reject) => {\n        timer = setTimeout(() => reject(new FsDeadlineError(operation, timeoutMs)), timeoutMs);\n        // Never hold the process open on the guard alone — without unref a\n        // pending deadline would keep `skaile serve` alive after shutdown.\n        timer.unref?.();\n      }),\n    ]);\n  } finally {\n    if (timer !== undefined) clearTimeout(timer);\n  }\n}\n\n/**\n * Run an async filesystem operation under a deadline, mapping every failure to\n * `fallback`.\n *\n * For best-effort probes that previously used `existsSync` — a missing file, an\n * unreadable file, and a wedged mount are all \"nothing usable here\", and the\n * caller has no better move than to continue without it.\n *\n * @param operation - Short label used in the timeout message.\n * @param fn - Thunk performing the operation.\n * @param fallback - Value returned when `fn` rejects or the deadline elapses.\n * @param timeoutMs - Deadline override; defaults to {@link fsDeadlineMs}.\n */\nexport async function tryWithFsDeadline<T>(\n  operation: string,\n  fn: () => Promise<T>,\n  fallback: T,\n  timeoutMs: number = fsDeadlineMs(),\n): Promise<T> {\n  try {\n    return await withFsDeadline(operation, fn, timeoutMs);\n  } catch {\n    return fallback;\n  }\n}\n","/**\n * Requirement identity — one key for \"asset X requires asset Y\", wherever the\n * declaration comes from (a SKILL.md `metadata.requires` entry, a manifest\n * `dependencies:` entry, a lock-time edge).\n *\n * A requirement is identified by `publisher/kind:name`. A declaration that names\n * no publisher means \"the declaring asset's own publisher\", so `report-table` on a\n * `@skaile-ai` asset and `skill:@skaile-ai/report-table` are the same requirement.\n * Every command that lists, dedupes or compares requirements goes through here.\n */\n\nimport { type Dependency, depToStr, parseDep } from \"./models.js\";\n\n/**\n * `publisher/kind:name` identity of a requirement. A dependency that names no\n * publisher takes `fallbackPublisher` (the declaring asset's); without either, the\n * key is the unqualified `kind:name`.\n */\nexport function requirementKey(dep: Dependency, fallbackPublisher?: string): string {\n  const publisher = dep.publisher ?? fallbackPublisher ?? \"\";\n  return publisher ? `${publisher}/${dep.kind}:${dep.name}` : `${dep.kind}:${dep.name}`;\n}\n\n/**\n * Each requirement once, in first-seen order. Two declarations of the same\n * {@link requirementKey} collapse into one; the surviving entry carries the\n * publisher and the pin of whichever declaration named them.\n */\nexport function dedupeRequirements(\n  deps: readonly Dependency[],\n  fallbackPublisher?: string,\n): Dependency[] {\n  const out: Dependency[] = [];\n  const at = new Map<string, number>();\n  for (const dep of deps) {\n    const key = requirementKey(dep, fallbackPublisher);\n    const i = at.get(key);\n    if (i === undefined) {\n      at.set(key, out.length);\n      out.push({ ...dep });\n      continue;\n    }\n    const kept = out[i] as Dependency;\n    if (!kept.publisher && dep.publisher) kept.publisher = dep.publisher;\n    if (!kept.pin && dep.pin) kept.pin = dep.pin;\n  }\n  return out;\n}\n\n/** {@link dedupeRequirements} for requirement strings (`kind:name[#pin]`, `kind:@pub/name[#pin]`). */\nexport function dedupeRequirementRefs(\n  refs: readonly string[],\n  fallbackPublisher?: string,\n): string[] {\n  const parse = (ref: string): Dependency => {\n    const dep = parseDep(ref);\n    // The scoped form carries its own pin; a bare `kind:name#pin` keeps it in the name.\n    const hash = dep.name.indexOf(\"#\");\n    if (hash === -1) return dep;\n    const pin = dep.name.slice(hash + 1).trim();\n    dep.name = dep.name.slice(0, hash);\n    if (pin && !dep.pin) dep.pin = pin;\n    return dep;\n  };\n  return dedupeRequirements(refs.map(parse), fallbackPublisher).map(depToStr);\n}\n","/**\n * Manifest parsing — reads SKILL.md, AGENT.md, agent.yaml, CONTRACT.md,\n * CONNECTOR.md, *.prompt.md, *.flow.yaml, *.preset.yaml files and\n * produces CatalogEntry objects.\n * Used by @skaile/asset-manager for on-demand repo scanning.\n *\n * **All filesystem access here is async and bounded** (issue #454). A repo root\n * can resolve onto the rclone FUSE mount at `/skaile/workspace` — either\n * directly (a `sources[].path` pointing into the workspace) or indirectly, since\n * the walk follows symlinks and an off-mount tree can link into one. A\n * synchronous `readdirSync`/`statSync`/`readFileSync` there parks the whole\n * `skaile serve` event loop in an uninterruptible kernel wait, and a hang is not\n * an error so `try/catch` never fires. Every call goes through\n * {@link withFsDeadline}/{@link tryWithFsDeadline}, and the walk itself is\n * bounded by depth, entry count, a wall-clock budget, and an ancestor-inode set.\n */\n\nimport type { Dirent } from \"node:fs\";\nimport { opendir, readFile, stat } from \"node:fs/promises\";\nimport { basename, dirname, join } from \"node:path\";\nimport { parse } from \"yaml\";\nimport { fsDeadlineMs, tryWithFsDeadline, withFsDeadline } from \"./fs-deadline.js\";\nimport { createLogger } from \"./logging/create-logger.js\";\nimport type { AssetKind, CatalogEntry, Dependency } from \"./models.js\";\nimport { isValidAssetName, parseDep, slugifyAssetName } from \"./models.js\";\nimport { dedupeRequirements } from \"./requirements.js\";\nimport type { Diagnostic } from \"./workspace-config.js\";\n\n// ── Bounded manifest I/O ──────────────────────────────────────────────────────\n\n/**\n * Read one manifest file under a deadline.\n *\n * @param filePath - Absolute path to the manifest.\n * @param timeoutMs - Per-operation deadline; defaults to {@link fsDeadlineMs}.\n * @throws {import(\"./fs-deadline.js\").FsDeadlineError} when the read outlives the deadline.\n */\nfunction readManifestFile(filePath: string, timeoutMs?: number): Promise<string> {\n  return withFsDeadline(`readFile ${filePath}`, () => readFile(filePath, \"utf8\"), timeoutMs);\n}\n\n/**\n * Read one manifest file under a deadline, degrading an unreadable/slow file to\n * an empty document. Mirrors the pre-#454 `try { readFileSync } catch {}` shape\n * of the YAML parsers: a file we cannot read yields `{}` metadata rather than\n * aborting the caller.\n */\nfunction readManifestFileOrEmpty(filePath: string, timeoutMs?: number): Promise<string> {\n  return tryWithFsDeadline(`readFile ${filePath}`, () => readFile(filePath, \"utf8\"), \"\", timeoutMs);\n}\n\n// ── Frontmatter helpers ───────────────────────────────────────────────────────\n\n/**\n * Result of parsing YAML frontmatter from a markdown file.\n * @docLink packages/core/concepts#frontmatter-result\n */\nexport interface FrontmatterResult {\n  /** Parsed YAML data. Empty object if no frontmatter block is present. */\n  data: Record<string, unknown>;\n  /** Markdown body below the frontmatter block (trimmed). */\n  body: string;\n}\n\n/**\n * Parse YAML frontmatter from a markdown file (`---` delimited).\n * Returns `{ data: {}, body: text }` when no frontmatter block is present.\n *\n * @param text - Raw file contents\n * @returns Parsed frontmatter data and the remaining body text\n * @docLink packages/core/concepts#parse-frontmatter\n */\nexport function parseFrontmatter(text: string): FrontmatterResult {\n  const m = text.match(/^---\\s*\\n([\\s\\S]*?)\\n---/);\n  if (!m) return { data: {}, body: text.trim() };\n  try {\n    const data = (parse(m[1]!) as Record<string, unknown>) ?? {};\n    const body = text.slice(m[0].length).trim();\n    return { data, body };\n  } catch {\n    return { data: {}, body: text.trim() };\n  }\n}\n\n/** Extract version from frontmatter, checking both top-level and metadata.version. */\nfunction extractVersion(meta: Record<string, unknown>): string {\n  return String(\n    meta.version ?? (meta.metadata as Record<string, unknown> | undefined)?.version ?? \"\",\n  );\n}\n\n/**\n * Parse the `requires:` field from manifest frontmatter into typed `Dependency` objects.\n * Accepts a comma-separated string or an array of `\"kind:name\"` strings. Reads from either\n * the root or `metadata.requires` (matching `extractVersion`'s dual-location behavior) so\n * skill authors can follow the agentskills.io convention of placing skaile extensions under\n * `metadata:` while remaining backward-compatible with root-level declarations.\n *\n * @param meta - Parsed frontmatter data object\n * @returns Array of `Dependency` objects (empty when `requires` is absent)\n * @docLink packages/core/concepts#parse-requires\n */\nexport function parseRequires(meta: Record<string, unknown>): Dependency[] {\n  const raw = meta.requires ?? (meta.metadata as Record<string, unknown> | undefined)?.requires;\n  if (!raw) return [];\n  const list =\n    typeof raw === \"string\"\n      ? raw.split(\",\").map((s) => s.trim())\n      : Array.isArray(raw)\n        ? (raw as string[])\n        : [];\n  return list.filter(Boolean).map(parseDep);\n}\n\n// ── agent.yaml composes → requires ─────────────────────────────────────────────\n\n/**\n * Collect the catalog refs of an `agent.yaml` `composes[]` list as requires so\n * `skaile install` pulls them automatically. Local paths (`.`/`/`) and\n * `library://` instance refs are skipped — not catalog assets. A ref without a\n * `kind:` prefix takes the item's `kind`; the publisher scope, `@version` and\n * `#pin` are stripped so only `kind:name` is tracked.\n */\nfunction collectComposeRefs(raw: unknown, out: Dependency[]): void {\n  if (!Array.isArray(raw)) return;\n  for (const item of raw) {\n    if (typeof item !== \"object\" || item === null) continue;\n    const { kind: itemKind, ref } = item as Record<string, unknown>;\n    if (typeof ref !== \"string\" || !ref) continue;\n    if (ref.startsWith(\".\") || ref.startsWith(\"/\") || ref.includes(\"://\")) continue;\n    if (typeof itemKind !== \"string\" || !itemKind) continue;\n    const normalized = ref.includes(\":\") ? ref : `${itemKind}:${ref}`;\n    const colonIdx = normalized.indexOf(\":\");\n    const kind = normalized.slice(0, colonIdx).trim();\n    let rest = normalized.slice(colonIdx + 1).trim();\n    const hashIdx = rest.indexOf(\"#\");\n    if (hashIdx !== -1) rest = rest.slice(0, hashIdx).trim();\n    if (rest.startsWith(\"@\")) {\n      // Scoped form @publisher/name → name is the segment after the slash.\n      const slashIdx = rest.indexOf(\"/\");\n      rest = slashIdx !== -1 ? rest.slice(slashIdx + 1).trim() : \"\";\n    }\n    // A trailing `@<version>` range (`name@^1`) is not part of the name.\n    const atIdx = rest.indexOf(\"@\");\n    const name = atIdx !== -1 ? rest.slice(0, atIdx).trim() : rest;\n    if (name) out.push({ kind, name });\n  }\n}\n\n// ── Manifest parsers ──────────────────────────────────────────────────────────\n\n/**\n * Thrown when a `SKILL.md`-style manifest declares a `type:` that is not a\n * registered asset kind. The kind registry is the only authority on kinds, so an\n * unregistered `type:` is reported (see {@link manifestKindDiagnostic}) instead\n * of being silently catalogued as a skill.\n */\nexport class ManifestKindError extends Error {\n  constructor(\n    readonly filePath: string,\n    readonly kind: string,\n  ) {\n    super(`${filePath}: unknown asset kind \"${kind}\" in frontmatter \\`type:\\``);\n    this.name = \"ManifestKindError\";\n  }\n}\n\n/** Convert a {@link ManifestKindError} into the `unknown_asset_kind` error diagnostic. */\nexport function manifestKindDiagnostic(err: ManifestKindError): Diagnostic {\n  return {\n    code: \"unknown_asset_kind\",\n    severity: \"error\",\n    message: `${err.filePath}: asset kind \"${err.kind}\" is not registered`,\n    path: err.filePath,\n  };\n}\n\n/**\n * Parse a `SKILL.md` file into a `CatalogEntry`.\n * The `kind` field defaults to `\"skill\"` but can be overridden via the `type:`\n * frontmatter key to any registered kind. Falls back to the parent directory name\n * when `name:` is absent.\n *\n * Async since #454 — the file may live on the FUSE workspace mount.\n *\n * @param filePath - Absolute path to the `SKILL.md` file\n * @param repoName - Repository name used as the `repository` field of the entry\n * @param knownKinds - Registered asset kinds (`registry.getAllKinds()`); a `type:` outside it throws\n * @returns Populated `CatalogEntry` with kind, name, description, version, and requires\n * @throws {ManifestKindError} when `type:` names an unregistered kind\n * @docLink packages/core/concepts#from-skill-md\n */\nexport async function fromSkillMd(\n  filePath: string,\n  repoName: string,\n  knownKinds: ReadonlySet<string>,\n): Promise<CatalogEntry> {\n  return fromSkillMdContent(await readManifestFile(filePath), repoName, filePath, knownKinds);\n}\n\n/** Pure {@link fromSkillMd} core over already-read content (no I/O). */\nfunction fromSkillMdContent(\n  content: string,\n  repoName: string,\n  filePath: string,\n  knownKinds: ReadonlySet<string>,\n): CatalogEntry {\n  const { data: meta } = parseFrontmatter(content);\n  // An absent `type:` is the SKILL.md default; an explicit one must be registered.\n  const kind = meta.type === undefined ? \"skill\" : String(meta.type);\n  if (meta.type !== undefined && !knownKinds.has(kind)) throw new ManifestKindError(filePath, kind);\n  return {\n    name: String(meta.name ?? basename(dirname(filePath))),\n    kind,\n    description: String(meta.description ?? \"\"),\n    source: filePath,\n    publisher: repoName,\n    version: extractVersion(meta),\n    requires: parseRequires(meta),\n    dependencies: [],\n  };\n}\n\n/**\n * Parse an `AGENT.md` file into a `CatalogEntry` with `kind: \"agent\"`.\n * Falls back to the parent directory name when `name:` is absent.\n *\n * Async since #454 — the file may live on the FUSE workspace mount.\n *\n * @param filePath - Absolute path to the `AGENT.md` file\n * @param repoName - Repository name used as the `repository` field of the entry\n * @returns Populated `CatalogEntry` with kind `\"agent\"`\n * @docLink packages/core/concepts#from-agent-md\n */\nexport async function fromAgentMd(filePath: string, repoName: string): Promise<CatalogEntry> {\n  return fromAgentMdContent(await readManifestFile(filePath), repoName, filePath);\n}\n\n/** Pure {@link fromAgentMd} core over already-read content (no I/O). */\nfunction fromAgentMdContent(content: string, repoName: string, filePath: string): CatalogEntry {\n  const { data: meta } = parseFrontmatter(content);\n  return {\n    name: String(meta.name ?? basename(dirname(filePath))),\n    kind: \"agent\",\n    description: String(meta.description ?? \"\"),\n    source: filePath,\n    publisher: repoName,\n    version: extractVersion(meta),\n    requires: parseRequires(meta),\n    dependencies: [],\n  };\n}\n\n/**\n * Parse an `agent.yaml` file into a `CatalogEntry` with `kind: \"agent\"`.\n * `requires` lists the catalog refs of `composes[]` (local paths and `library://`\n * instances excluded). The deprecated 0.1 fields (`skills`, `requires`, `persona`,\n * …) are not read; `skaile validate` reports them.\n *\n * Async since #454 — the file may live on the FUSE workspace mount.\n *\n * @param filePath - Absolute path to the `agent.yaml` file\n * @param repoName - Repository name used as the `repository` field of the entry\n * @returns Populated `CatalogEntry` with kind `\"agent\"` and full dependency graph\n * @docLink packages/core/concepts#from-agent-yaml\n */\nexport async function fromAgentYaml(filePath: string, repoName: string): Promise<CatalogEntry> {\n  return fromAgentYamlContent(await readManifestFileOrEmpty(filePath), repoName, filePath);\n}\n\n/** Pure {@link fromAgentYaml} core over already-read content (no I/O). */\nfunction fromAgentYamlContent(content: string, repoName: string, filePath: string): CatalogEntry {\n  let meta: Record<string, unknown> = {};\n  try {\n    meta = (parse(content) as Record<string, unknown>) ?? {};\n  } catch {}\n\n  const requires: Dependency[] = [];\n  collectComposeRefs(meta.composes, requires);\n\n  return {\n    name: String(meta.name ?? basename(dirname(filePath))),\n    kind: \"agent\",\n    description: String(meta.description ?? \"\"),\n    source: filePath,\n    publisher: repoName,\n    version: String(meta.version ?? \"\"),\n    requires,\n    dependencies: [],\n  };\n}\n\n/**\n * Parse a `*.prompt.md` file into a `CatalogEntry` with `kind: \"prompt\"`.\n * The name defaults to the filename stem (without the `.prompt.md` suffix)\n * when no `name:` frontmatter key is present.\n *\n * Async since #454 — the file may live on the FUSE workspace mount.\n *\n * @param filePath - Absolute path to the `.prompt.md` file\n * @param repoName - Repository name used as the `repository` field of the entry\n * @returns Populated `CatalogEntry` with kind `\"prompt\"`\n * @docLink packages/core/concepts#from-prompt-md\n */\nexport async function fromPromptMd(filePath: string, repoName: string): Promise<CatalogEntry> {\n  return fromPromptMdContent(await readManifestFile(filePath), repoName, filePath);\n}\n\n/** Pure {@link fromPromptMd} core over already-read content (no I/O). */\nfunction fromPromptMdContent(content: string, repoName: string, filePath: string): CatalogEntry {\n  const { data: meta } = parseFrontmatter(content);\n  const name = String(meta.name ?? basename(filePath).replace(/\\.prompt\\.md$/, \"\"));\n  return {\n    name,\n    kind: \"prompt\",\n    description: String(meta.description ?? \"\"),\n    source: filePath,\n    publisher: repoName,\n    version: extractVersion(meta),\n    requires: parseRequires(meta),\n    dependencies: [],\n  };\n}\n\n/**\n * Parse a `*.flow.yaml` or `*.flow.json` file into a `CatalogEntry` with `kind: \"flow\"`.\n * The name resolves from `name:` or `id:` frontmatter, falling back to the filename stem.\n *\n * Async since #454 — the file may live on the FUSE workspace mount.\n *\n * @param filePath - Absolute path to the flow definition file\n * @param repoName - Repository name used as the `repository` field of the entry\n * @returns Populated `CatalogEntry` with kind `\"flow\"`\n * @docLink packages/core/concepts#from-flow-yaml\n */\nexport async function fromFlowYaml(filePath: string, repoName: string): Promise<CatalogEntry> {\n  return fromFlowYamlContent(await readManifestFileOrEmpty(filePath), repoName, filePath);\n}\n\n/** Pure {@link fromFlowYaml} core over already-read content (no I/O). */\nfunction fromFlowYamlContent(content: string, repoName: string, filePath: string): CatalogEntry {\n  let meta: Record<string, unknown> = {};\n  try {\n    meta = (parse(content) as Record<string, unknown>) ?? {};\n  } catch {}\n\n  const stem = basename(filePath)\n    .replace(/\\.flow\\.yaml$/, \"\")\n    .replace(/\\.flow\\.json$/, \"\");\n  return {\n    name: String(meta.name ?? meta.id ?? stem),\n    kind: \"flow\",\n    description: String(meta.description ?? \"\"),\n    source: filePath,\n    publisher: repoName,\n    version: String(meta.version ?? \"\"),\n    requires: parseRequires(meta),\n    dependencies: [],\n  };\n}\n\n/**\n * Split a preset's `items[]` into the asset refs a dependency expansion installs\n * and the instance items it cannot: `library://` instance refs, `#item` cross\n * references, items that prompt for `placeholders`, and `connector:`/`mcp:` items\n * with an `id` (those become `skaile.yaml` declarations through\n * `skaile preset apply`). Refs are kept verbatim — publisher/pin qualifiers\n * preserved, nested `preset:` refs included.\n *\n * @param items - The raw `items` value of a parsed preset manifest.\n * @returns Deduped asset refs plus the count of skipped instance items.\n * @docLink packages/core/concepts#preset-item-refs\n */\nexport function presetItemRefs(items: unknown): { refs: string[]; skipped: number } {\n  const refs = new Set<string>();\n  let skipped = 0;\n  if (!Array.isArray(items)) return { refs: [], skipped };\n  for (const raw of items) {\n    if (raw === null || typeof raw !== \"object\") continue;\n    const item = raw as Record<string, unknown>;\n    const ref = typeof item.ref === \"string\" ? item.ref.trim() : \"\";\n    if (!ref) continue;\n    const hasPlaceholders = Array.isArray(item.placeholders) && item.placeholders.length > 0;\n    const declaresInstance =\n      typeof item.id === \"string\" && (ref.startsWith(\"connector:\") || ref.startsWith(\"mcp:\"));\n    if (\n      ref.startsWith(\"library://\") ||\n      ref.startsWith(\"#\") ||\n      hasPlaceholders ||\n      declaresInstance\n    ) {\n      skipped++;\n      continue;\n    }\n    refs.add(ref);\n  }\n  return { refs: [...refs], skipped };\n}\n\n/**\n * Parse a `*.preset.yaml` file into a `CatalogEntry` with `kind: \"preset\"`.\n * `dependencies` carries the asset refs of its items (see {@link presetItemRefs}).\n *\n * Async since #454 — the file may live on the FUSE workspace mount.\n *\n * @param filePath - Absolute path to the preset YAML file\n * @param repoName - Repository name used as the `repository` field of the entry\n * @returns Populated `CatalogEntry` with kind `\"preset\"`\n * @docLink packages/core/concepts#from-preset-yaml\n */\nexport async function fromPresetYaml(filePath: string, repoName: string): Promise<CatalogEntry> {\n  return fromPresetYamlContent(await readManifestFileOrEmpty(filePath), repoName, filePath);\n}\n\n/** Pure {@link fromPresetYaml} core over already-read content (no I/O). */\nfunction fromPresetYamlContent(content: string, repoName: string, filePath: string): CatalogEntry {\n  let meta: Record<string, unknown> = {};\n  try {\n    meta = (parse(content) as Record<string, unknown>) ?? {};\n  } catch {}\n\n  const { refs, skipped } = presetItemRefs(meta.items);\n  return {\n    name: String(meta.name ?? basename(filePath).replace(/\\.preset\\.yaml$/, \"\")),\n    kind: \"preset\",\n    description: String(meta.description ?? \"\"),\n    source: filePath,\n    publisher: repoName,\n    version: String(meta.version ?? \"\"),\n    requires: [],\n    dependencies: refs,\n    ...(skipped > 0 ? { skippedItems: skipped } : {}),\n  };\n}\n\n/**\n * Extract an asset's raw transitive dependency ref strings from its manifest\n * file, kept verbatim (publisher/pin qualifiers preserved, comments dropped by\n * the parser): a `*.preset.yaml`'s asset items (see {@link presetItemRefs}) or the\n * union of a `*.flow.{yaml,json}`'s top-level `requires` / `dependencies`. Unlike\n * {@link parseRequires}, refs are returned as-is — the resolver needs the full\n * `kind:@<publisher>/name[#pin]` form, not a publisher-stripped {@link Dependency}.\n *\n * Async since #454 — the file may live on the FUSE workspace mount.\n *\n * @param filePath - Absolute path to a `.preset.yaml` or `.flow.{yaml,json}`.\n * @returns Deduped `refs` (`[]` on parse failure or no deps) and the count of\n *   preset instance items that are not expanded.\n * @docLink packages/core/concepts#asset-dep-refs\n */\nexport async function assetDepRefs(filePath: string): Promise<{ refs: string[]; skipped: number }> {\n  return assetDepRefsFromContent(await readManifestFileOrEmpty(filePath), filePath);\n}\n\n/** Pure {@link assetDepRefs} core over already-read content (no I/O). */\nfunction assetDepRefsFromContent(\n  content: string,\n  filePath: string,\n): { refs: string[]; skipped: number } {\n  // YAML is a JSON superset, so `parse` reads `.flow.json` too.\n  let meta: Record<string, unknown> = {};\n  try {\n    meta = (parse(content) as Record<string, unknown>) ?? {};\n  } catch {\n    return { refs: [], skipped: 0 };\n  }\n  if (filePath.endsWith(\".preset.yaml\")) return presetItemRefs(meta.items);\n  const out: string[] = [];\n  const collect = (v: unknown) => {\n    if (Array.isArray(v))\n      for (const x of v) if (typeof x === \"string\" && x.trim()) out.push(x.trim());\n  };\n  collect(meta.requires);\n  collect((meta.metadata as Record<string, unknown> | undefined)?.requires);\n  collect(meta.dependencies);\n  return { refs: [...new Set(out)], skipped: 0 };\n}\n\n/**\n * Parse a `CONTRACT.md` file into a `CatalogEntry` with `kind: \"contract\"`.\n * Falls back to the parent directory name when `name:` is absent.\n *\n * Async since #454 — the file may live on the FUSE workspace mount.\n *\n * @param filePath - Absolute path to the `CONTRACT.md` file\n * @param repoName - Repository name used as the `repository` field of the entry\n * @returns Populated `CatalogEntry` with kind `\"contract\"`\n * @docLink packages/core/concepts#from-contract-md\n */\nexport async function fromContractMd(filePath: string, repoName: string): Promise<CatalogEntry> {\n  return fromContractMdContent(await readManifestFile(filePath), repoName, filePath);\n}\n\n/** Pure {@link fromContractMd} core over already-read content (no I/O). */\nfunction fromContractMdContent(content: string, repoName: string, filePath: string): CatalogEntry {\n  const { data: meta } = parseFrontmatter(content);\n  return {\n    name: String(meta.name ?? basename(dirname(filePath))),\n    kind: \"contract\",\n    description: String(meta.description ?? \"\"),\n    source: filePath,\n    publisher: repoName,\n    version: extractVersion(meta),\n    requires: parseRequires(meta),\n    dependencies: [],\n  };\n}\n\n/**\n * Parse an `MCP.md` file into a `CatalogEntry` with `kind: \"mcp-server\"`.\n * Falls back to the parent directory name when `name:` is absent.\n *\n * Frontmatter fields (catalog identity):\n *   - `name`        — server name (default: parent dir name)\n *   - `description` — short description\n *   - `version`     — semver\n *   - `keywords`    — array of discovery tags\n *\n * Frontmatter fields (runtime defaults, stored in `metadata`):\n *   - `transport`   — \"stdio\" | \"sse\" | \"http\" (default: \"stdio\")\n *   - `command`     — command to execute (stdio)\n *   - `args`        — command arguments (stdio)\n *   - `env`         — environment variables (stdio)\n *   - `url`         — server URL (sse/http)\n *   - `headers`     — HTTP headers (sse/http)\n *\n * When `mcp:name` appears in `skaile.yaml` `dependencies`, the runner reads\n * these defaults from `metadata` to build a `McpServerDeclaration` without\n * requiring verbose inline config.\n *\n * Async since #454 — the file may live on the FUSE workspace mount.\n *\n * @param filePath - Absolute path to the `MCP.md` file\n * @param repoName - Repository name used as the `repository` field of the entry\n * @returns Populated `CatalogEntry` with kind `\"mcp-server\"`\n * @docLink packages/core/concepts#from-mcp-server-md\n */\nexport async function fromMcpServerMd(filePath: string, repoName: string): Promise<CatalogEntry> {\n  return fromMcpServerMdContent(await readManifestFile(filePath), repoName, filePath);\n}\n\n/**\n * Parse pre-read MCP.md content into a `CatalogEntry`.\n * Callers that already hold the file content (e.g. to avoid a second read) use\n * this directly; `fromMcpServerMd` is a thin wrapper that reads then delegates here.\n *\n * @param content  - UTF-8 content of the `MCP.md` file\n * @param repoName - Repository name used as the `publisher` field of the entry\n * @param filePath - Absolute path (used as `source` and for name fallback)\n * @returns Populated `CatalogEntry` with kind `\"mcp-server\"`\n */\nexport function fromMcpServerMdContent(\n  content: string,\n  repoName: string,\n  filePath: string,\n): CatalogEntry {\n  const { data: meta } = parseFrontmatter(content);\n\n  // Extract runtime defaults into metadata\n  const metadata: Record<string, unknown> = {};\n  if (meta.transport) metadata.transport = String(meta.transport);\n  if (meta.command) metadata.command = String(meta.command);\n  if (Array.isArray(meta.args)) metadata.args = meta.args.map(String);\n  if (meta.env && typeof meta.env === \"object\" && !Array.isArray(meta.env)) {\n    metadata.env = meta.env as Record<string, string>;\n  }\n  if (meta.url) metadata.url = String(meta.url);\n  if (typeof meta.ca === \"string\") metadata.ca = meta.ca;\n  if (meta.headers && typeof meta.headers === \"object\" && !Array.isArray(meta.headers)) {\n    metadata.headers = meta.headers as Record<string, string>;\n  }\n  if (meta.recipe && typeof meta.recipe === \"object\" && !Array.isArray(meta.recipe)) {\n    metadata.recipe = meta.recipe;\n  }\n\n  return {\n    name: String(meta.name ?? basename(dirname(filePath))),\n    kind: \"mcp-server\",\n    description: String(meta.description ?? \"\"),\n    source: filePath,\n    publisher: repoName,\n    version: extractVersion(meta),\n    requires: parseRequires(meta),\n    dependencies: [],\n    metadata: Object.keys(metadata).length > 0 ? metadata : undefined,\n  };\n}\n\n/**\n * Parse a `knowledge.yaml` file into a `CatalogEntry` with `kind: \"knowledge\"`.\n * Falls back to the parent directory name when `name:` is absent.\n *\n * Async since #454 — the file may live on the FUSE workspace mount.\n *\n * @param filePath - Absolute path to the `knowledge.yaml` file\n * @param repoName - Repository name used as the `repository` field of the entry\n * @returns Populated `CatalogEntry` with kind `\"knowledge\"`\n * @docLink packages/core/concepts#from-knowledge-yaml\n */\nexport async function fromKnowledgeYaml(filePath: string, repoName: string): Promise<CatalogEntry> {\n  return fromKnowledgeYamlContent(await readManifestFileOrEmpty(filePath), repoName, filePath);\n}\n\n/** Pure {@link fromKnowledgeYaml} core over already-read content (no I/O). */\nfunction fromKnowledgeYamlContent(\n  content: string,\n  repoName: string,\n  filePath: string,\n): CatalogEntry {\n  let meta: Record<string, unknown> = {};\n  try {\n    meta = (parse(content) as Record<string, unknown>) ?? {};\n  } catch {}\n  return {\n    name: String(meta.name ?? basename(dirname(filePath))),\n    kind: \"knowledge\",\n    description: String(meta.description ?? \"\"),\n    source: filePath,\n    publisher: repoName,\n    version: String(meta.version ?? \"\"),\n    requires: parseRequires(meta),\n    dependencies: [],\n  };\n}\n\n/**\n * Parse a `CONNECTOR.md` file into a `CatalogEntry` with `kind: \"connector\"`.\n * Falls back to the parent directory name when `name:` is absent.\n *\n * Frontmatter fields (catalog identity):\n *   - `name`        — connector name (default: parent dir name)\n *   - `description` — short description\n *   - `version`     — semver\n *\n * Frontmatter fields (runtime defaults, stored in `metadata`):\n *   - `entry`        — adapter entry point (default: \"./adapter.ts\")\n *   - `npm_deps`     — npm dependencies required by the adapter\n *   - `fields`       — configuration fields the adapter expects\n *   - `health_check` — whether to run a health check on connect\n *\n * The markdown body (below the frontmatter) is stored in `metadata.body`\n * so the runner can inject the connector's skill description into the\n * system prompt when `expose_as_skill` is enabled.\n *\n * Async since #454 — the file may live on the FUSE workspace mount.\n *\n * @param filePath - Absolute path to the `CONNECTOR.md` file\n * @param repoName - Repository name used as the `repository` field of the entry\n * @returns Populated `CatalogEntry` with kind `\"connector\"`\n * @docLink packages/core/concepts#from-connector-md\n */\nexport async function fromConnectorMd(filePath: string, repoName: string): Promise<CatalogEntry> {\n  return fromConnectorMdContent(await readManifestFile(filePath), repoName, filePath);\n}\n\n/** Pure {@link fromConnectorMd} core over already-read content (no I/O). */\nfunction fromConnectorMdContent(content: string, repoName: string, filePath: string): CatalogEntry {\n  const { data: meta, body } = parseFrontmatter(content);\n  const name = String(meta.name ?? basename(dirname(filePath)));\n  return {\n    name,\n    kind: \"connector\" as AssetKind,\n    description: String(meta.description ?? \"\"),\n    source: filePath,\n    publisher: repoName,\n    version: extractVersion(meta),\n    requires: parseRequires(meta),\n    dependencies: [],\n    metadata: {\n      entry: meta.entry ?? \"./adapter.ts\",\n      npm_deps: meta.npm_deps ?? {},\n      fields: meta.fields ?? [],\n      health_check: meta.health_check ?? null,\n      body,\n    },\n  };\n}\n\n// ── Recursive walker ──────────────────────────────────────────────────────────\n\ninterface WalkEntry {\n  path: string;\n  name: string;\n}\n\n/** Default maximum directory nesting the walk descends into. */\nexport const DEFAULT_WALK_MAX_DEPTH = 32;\n\n/** Default maximum number of directory entries a single walk may examine. */\nexport const DEFAULT_WALK_MAX_ENTRIES = 50_000;\n\n/** Default wall-clock budget for one whole walk / scan pass, in milliseconds. */\nexport const DEFAULT_WALK_BUDGET_MS = 60_000;\n\n/** Env override for {@link DEFAULT_WALK_MAX_DEPTH}. */\nexport const WALK_MAX_DEPTH_ENV_VAR = \"SKAILE_SCAN_MAX_DEPTH\";\n\n/** Env override for {@link DEFAULT_WALK_MAX_ENTRIES}. */\nexport const WALK_MAX_ENTRIES_ENV_VAR = \"SKAILE_SCAN_MAX_ENTRIES\";\n\n/** Env override for {@link DEFAULT_WALK_BUDGET_MS}. */\nexport const WALK_BUDGET_MS_ENV_VAR = \"SKAILE_SCAN_DEADLINE_MS\";\n\n/** Read a positive-integer env override, falling back when absent or unusable. */\nfunction envInt(name: string, fallback: number): number {\n  const raw = process.env[name];\n  if (raw === undefined) return fallback;\n  const parsed = Number.parseInt(raw, 10);\n  return Number.isFinite(parsed) && parsed > 0 ? parsed : fallback;\n}\n\n/**\n * Why a walk stopped early. Every one of these means the returned entries are a\n * **partial** view of the tree — never present a truncated walk as complete.\n *\n * @docLink packages/core/concepts#walk-dir\n */\nexport interface WalkTruncation {\n  reason: \"depth\" | \"entries\" | \"budget\" | \"cycle\" | \"unreadable\";\n  /** Directory (or symlink) at which the bound was hit. */\n  path: string;\n  /** The bound that was hit, when the reason has a numeric limit. */\n  limit?: number;\n}\n\n/**\n * Bounds for {@link walkDir} / {@link scanDirectory}.\n *\n * @docLink packages/core/concepts#walk-dir\n */\nexport interface WalkOptions {\n  /** Maximum nesting depth below the root. Default {@link DEFAULT_WALK_MAX_DEPTH}. */\n  maxDepth?: number;\n  /** Maximum directory entries examined across the whole walk. Default {@link DEFAULT_WALK_MAX_ENTRIES}. */\n  maxEntries?: number;\n  /**\n   * Wall-clock budget for the whole walk. Default {@link DEFAULT_WALK_BUDGET_MS}.\n   * The check is inclusive, so `0` yields no entries at all.\n   */\n  budgetMs?: number;\n  /** Per-`opendir`/`stat`/`readFile` deadline. Default {@link fsDeadlineMs}. */\n  opTimeoutMs?: number;\n  /**\n   * Called once per distinct truncation reason. Defaults to a `warn` on the\n   * core logger — override to route the signal somewhere the caller can act on.\n   */\n  onTruncate?: (info: WalkTruncation) => void;\n}\n\n/**\n * Options for {@link scanDirectory}: the walk bounds plus the registered kind set\n * (`new Set(registry.getAllKinds())`) that typed frontmatter is checked against.\n */\nexport interface ScanOptions extends WalkOptions {\n  /** Registered asset kinds; a `SKILL.md` `type:` outside it is reported, not catalogued. */\n  knownKinds: ReadonlySet<string>;\n  /** Sink for scan diagnostics (`unknown_asset_kind`). Defaults to a `warn` on the core logger. */\n  onDiagnostic?: (diagnostic: Diagnostic) => void;\n  /**\n   * Return every asset found instead of one per `kind:name`. The default keeps the\n   * alphabetically later source path, which hides a second directory holding the\n   * same asset; a caller that must report such duplicates (`library index`) sets this.\n   */\n  keepDuplicates?: boolean;\n}\n\n/** Mutable bookkeeping threaded through one walk. */\ninterface WalkState {\n  maxDepth: number;\n  maxEntries: number;\n  opTimeoutMs: number | undefined;\n  deadlineAt: number;\n  examined: number;\n  /**\n   * `dev:ino` of the directories on the **current path from the root** — an\n   * ancestor stack, not an ever-visited set. Re-entering an ancestor is a cycle;\n   * re-reaching a directory off the current path is a diamond, and must be walked.\n   */\n  ancestors: Set<string>;\n  reported: Set<WalkTruncation[\"reason\"]>;\n  onTruncate: (info: WalkTruncation) => void;\n}\n\nlet walkLogger: ReturnType<typeof createLogger> | undefined;\n\n/** Default truncation sink — a structured warning naming the bound that was hit. */\nfunction warnTruncation(info: WalkTruncation): void {\n  walkLogger ??= createLogger({ kind: \"runner\", subkind: \"asset-scan\" });\n  walkLogger.warn(`asset scan truncated (${info.reason}) — results are incomplete`, {\n    ...info,\n  });\n}\n\n/** Default diagnostic sink for {@link scanDirectory}. */\nfunction warnDiagnostic(d: Diagnostic): void {\n  walkLogger ??= createLogger({ kind: \"runner\", subkind: \"asset-scan\" });\n  walkLogger.warn(d.message, { code: d.code, path: d.path });\n}\n\n/** Record a truncation once per reason so a wide tree does not spam the log. */\nfunction truncate(state: WalkState, info: WalkTruncation): void {\n  if (state.reported.has(info.reason)) return;\n  state.reported.add(info.reason);\n  state.onTruncate(info);\n}\n\n/**\n * Stable identity (`dev:ino`) of the directory `path` resolves to, or `null`\n * when it cannot be stat'ed within the deadline. Used to terminate symlink\n * cycles — the pre-#454 walker recursed forever on `a/link -> a`.\n */\nasync function dirIdentity(path: string, timeoutMs: number | undefined): Promise<string | null> {\n  const st = await tryWithFsDeadline(`stat ${path}`, () => stat(path), null, timeoutMs);\n  return st ? `${st.dev}:${st.ino}` : null;\n}\n\n/**\n * Read one directory's entries under a deadline, capped at the walk's remaining\n * entry budget. Uses `opendir` rather than `readdir` so a pathological directory\n * streams instead of materialising in full; entries are collected and sorted\n * because the `scanDirectory` dedup rule (\"alphabetically later source wins\")\n * depends on a deterministic per-level order.\n */\nasync function readDirEntries(\n  dir: string,\n  state: WalkState,\n): Promise<{ entries: Dirent[]; capped: boolean } | null> {\n  const remaining = state.maxEntries - state.examined;\n  if (remaining <= 0) return { entries: [], capped: true };\n  try {\n    return await withFsDeadline(\n      `opendir ${dir}`,\n      async () => {\n        const handle = await opendir(dir);\n        const entries: Dirent[] = [];\n        let capped = false;\n        for await (const e of handle) {\n          // Stop *before* keeping the over-budget entry, so `capped` means \"an\n          // entry was actually dropped\". Breaking after the push instead marked\n          // a directory of exactly `remaining` entries as truncated — and since\n          // `truncate()` reports once per reason for the whole walk, that\n          // spurious first report swallowed a later genuine one.\n          if (entries.length >= remaining) {\n            capped = true;\n            break;\n          }\n          entries.push(e);\n        }\n        entries.sort((a, b) => (a.name < b.name ? -1 : 1));\n        return { entries, capped };\n      },\n      state.opTimeoutMs,\n    );\n  } catch {\n    // Unreadable (permissions, vanished mid-walk) or the mount missed its\n    // deadline. Either way this subtree contributes nothing; keep walking.\n    truncate(state, { reason: \"unreadable\", path: dir });\n    return null;\n  }\n}\n\n/**\n * Recursively yield every file entry under `dir`, sorted alphabetically at each\n * level. Skips `.git` and `node_modules` directories and follows symlinks\n * (resolving to the stat target). `node_modules` is excluded because Bun's\n * `node_modules/.bun/...` layout contains symlink farms that form cycles when\n * packages reference each other transitively.\n *\n * **Async and bounded since #454.** A repo root can resolve onto the rclone FUSE\n * mount, where the previous synchronous `readdirSync`/`statSync` walk parked the\n * whole event loop. Four bounds now hold, and hitting any of them reports a\n * {@link WalkTruncation} — a truncated walk is never presented as a complete one:\n *\n * - **depth** ({@link WalkOptions.maxDepth}) — also the backstop for a cycle no\n *   inode check can see, e.g. a bind mount of the root inside itself.\n * - **entry count** ({@link WalkOptions.maxEntries}) — total directory entries\n *   examined, so an enormous tree cannot run unbounded.\n * - **wall-clock budget** ({@link WalkOptions.budgetMs}) — a wedged mount that\n *   times out one operation at a time cannot add up to an unbounded scan.\n * - **ancestor inodes** — the `dev:ino` of every directory on the path from the\n *   root is held while its subtree is walked, so `a/link -> a` terminates\n *   instead of recursing forever. Two sibling symlinks onto one shared\n *   directory are a diamond, not a cycle: both are walked, at the price of\n *   visiting the shared subtree twice — bounded by the entry and time budgets.\n *\n * @param dir - Absolute path to the directory to walk\n * @param options - Bounds and truncation sink; see {@link WalkOptions}\n * @docLink packages/core/concepts#walk-dir\n */\nexport async function* walkDir(dir: string, options: WalkOptions = {}): AsyncGenerator<WalkEntry> {\n  const state: WalkState = {\n    maxDepth: options.maxDepth ?? envInt(WALK_MAX_DEPTH_ENV_VAR, DEFAULT_WALK_MAX_DEPTH),\n    maxEntries: options.maxEntries ?? envInt(WALK_MAX_ENTRIES_ENV_VAR, DEFAULT_WALK_MAX_ENTRIES),\n    opTimeoutMs: options.opTimeoutMs,\n    deadlineAt:\n      Date.now() + (options.budgetMs ?? envInt(WALK_BUDGET_MS_ENV_VAR, DEFAULT_WALK_BUDGET_MS)),\n    examined: 0,\n    ancestors: new Set<string>(),\n    reported: new Set<WalkTruncation[\"reason\"]>(),\n    onTruncate: options.onTruncate ?? warnTruncation,\n  };\n  // The root is an ancestor of everything, so it is seeded here and never\n  // popped — a self-referential `root/link -> root` is caught on first descent.\n  const rootId = await dirIdentity(dir, state.opTimeoutMs);\n  if (rootId) state.ancestors.add(rootId);\n  yield* walkFrom(dir, 0, state);\n}\n\nasync function* walkFrom(dir: string, depth: number, state: WalkState): AsyncGenerator<WalkEntry> {\n  if (depth > state.maxDepth) {\n    truncate(state, { reason: \"depth\", path: dir, limit: state.maxDepth });\n    return;\n  }\n  if (Date.now() >= state.deadlineAt) {\n    truncate(state, { reason: \"budget\", path: dir });\n    return;\n  }\n\n  const read = await readDirEntries(dir, state);\n  if (!read) return;\n  if (read.capped) truncate(state, { reason: \"entries\", path: dir, limit: state.maxEntries });\n\n  for (const e of read.entries) {\n    if (state.examined >= state.maxEntries) {\n      truncate(state, { reason: \"entries\", path: dir, limit: state.maxEntries });\n      return;\n    }\n    if (Date.now() >= state.deadlineAt) {\n      truncate(state, { reason: \"budget\", path: dir });\n      return;\n    }\n    state.examined++;\n    const full = join(dir, e.name);\n\n    if (e.isSymbolicLink()) {\n      // A symlink is the only way a cycle can enter this walk, so identity is\n      // resolved here and nowhere else — one extra stat per link, none per\n      // ordinary directory.\n      const st = await tryWithFsDeadline(`stat ${full}`, () => stat(full), null, state.opTimeoutMs);\n      if (!st) continue;\n      if (st.isDirectory()) {\n        if (e.name === \".git\" || e.name === \"node_modules\") continue;\n        const id = `${st.dev}:${st.ino}`;\n        // Only an *ancestor* is a cycle. A target already walked elsewhere in\n        // the tree is a diamond (`a/link -> shared`, `b/link -> shared`) and\n        // dropping it would silently lose that subtree from the scan.\n        if (state.ancestors.has(id)) {\n          truncate(state, { reason: \"cycle\", path: full });\n          continue;\n        }\n        state.ancestors.add(id);\n        try {\n          yield* walkFrom(full, depth + 1, state);\n        } finally {\n          // finally, not a trailing delete: an early `return` from the bounds\n          // checks — or an abandoned consumer — would otherwise leave the\n          // ancestor stack holding a directory the walk has already left.\n          state.ancestors.delete(id);\n        }\n      } else {\n        yield { path: full, name: e.name };\n      }\n    } else if (e.isDirectory()) {\n      if (e.name !== \".git\" && e.name !== \"node_modules\") yield* walkFrom(full, depth + 1, state);\n    } else if (e.isFile()) {\n      yield { path: full, name: e.name };\n    }\n  }\n}\n\n// ── Public scanner ────────────────────────────────────────────────────────────\n\n/**\n * Coerce a scanned entry's `name` to a canonical asset name in place. When the\n * raw name is already canonical this is a no-op; otherwise the original is stashed\n * on `metadata.displayName` (only when not already set) so callers keep the pretty\n * label for display while identity uses the slug. A name that slugifies to empty\n * is left untouched — `parseAssetRef` will reject it downstream with its full hint.\n */\nfunction normalizeEntryName(e: CatalogEntry): void {\n  if (isValidAssetName(e.name)) return;\n  let slug: string;\n  try {\n    slug = slugifyAssetName(e.name);\n  } catch {\n    return;\n  }\n  const original = e.name;\n  e.name = slug;\n  if (e.metadata?.displayName === undefined) {\n    e.metadata = { ...e.metadata, displayName: original };\n  }\n}\n\n/**\n * Build a `CatalogEntry` from an already-read manifest, dispatching on filename.\n * Returns `null` when the filename is not a recognized manifest.\n */\nfunction entryFromManifest(\n  name: string,\n  content: string,\n  filePath: string,\n  repoName: string,\n  knownKinds: ReadonlySet<string>,\n): CatalogEntry | null {\n  if (name === \"SKILL.md\") return fromSkillMdContent(content, repoName, filePath, knownKinds);\n  if (name === \"AGENT.md\") return fromAgentMdContent(content, repoName, filePath);\n  if (name === \"agent.yaml\") return fromAgentYamlContent(content, repoName, filePath);\n  if (name === \"CONTRACT.md\") return fromContractMdContent(content, repoName, filePath);\n  if (name === \"MCP.md\") return fromMcpServerMdContent(content, repoName, filePath);\n  if (name === \"CONNECTOR.md\") return fromConnectorMdContent(content, repoName, filePath);\n  if (name === \"knowledge.yaml\") return fromKnowledgeYamlContent(content, repoName, filePath);\n  if (name.endsWith(\".prompt.md\")) return fromPromptMdContent(content, repoName, filePath);\n  if (name.endsWith(\".preset.yaml\")) return fromPresetYamlContent(content, repoName, filePath);\n  if (name.endsWith(\".flow.yaml\") || name.endsWith(\".flow.json\"))\n    return fromFlowYamlContent(content, repoName, filePath);\n  return null;\n}\n\n/** Filenames {@link scanDirectory} recognises as asset manifests. */\nfunction isManifestName(name: string): boolean {\n  return (\n    name === \"SKILL.md\" ||\n    name === \"AGENT.md\" ||\n    name === \"agent.yaml\" ||\n    name === \"CONTRACT.md\" ||\n    name === \"MCP.md\" ||\n    name === \"CONNECTOR.md\" ||\n    name === \"knowledge.yaml\" ||\n    name.endsWith(\".prompt.md\") ||\n    name.endsWith(\".preset.yaml\") ||\n    name.endsWith(\".flow.yaml\") ||\n    name.endsWith(\".flow.json\")\n  );\n}\n\n/** Per-asset values a `skaile.manifest.yaml` `assets[]` entry overrides on the scanned entry. */\ninterface ManifestAssetOverride {\n  publisher?: string;\n  dependencies: string[];\n}\n\n/**\n * Per-asset overrides declared in `<root>/skaile.manifest.yaml` `assets[]` (`publisher`,\n * `dependencies`), keyed `kind:name`. Empty when the manifest is absent, unreadable within\n * the deadline, or not valid YAML — a scan never fails on it.\n */\nasync function readManifestAssetOverrides(\n  root: string,\n  opTimeoutMs: number,\n): Promise<Record<string, ManifestAssetOverride>> {\n  const out: Record<string, ManifestAssetOverride> = {};\n  const file = join(root, \"skaile.manifest.yaml\");\n  const content = await tryWithFsDeadline(\n    `readFile ${file}`,\n    () => readFile(file, \"utf8\"),\n    null,\n    opTimeoutMs,\n  );\n  if (content === null) return out;\n  let doc: unknown;\n  try {\n    doc = parse(content);\n  } catch {\n    return out;\n  }\n  const assets = (doc as { assets?: unknown } | null)?.assets;\n  if (!Array.isArray(assets)) return out;\n  for (const a of assets) {\n    const { kind, name, publisher, dependencies } = (a ?? {}) as Record<string, unknown>;\n    if (typeof kind !== \"string\" || typeof name !== \"string\") continue;\n    const override: ManifestAssetOverride = {\n      dependencies: Array.isArray(dependencies)\n        ? dependencies.filter((d): d is string => typeof d === \"string\" && d.trim().length > 0)\n        : [],\n    };\n    const bare = typeof publisher === \"string\" ? publisher.trim().replace(/^@/, \"\") : \"\";\n    if (bare) override.publisher = bare;\n    if (override.publisher || override.dependencies.length > 0) out[`${kind}:${name}`] = override;\n  }\n  return out;\n}\n\n/**\n * Fold a manifest entry's `dependencies` into `entry.requires`: the manifest field is the\n * author-declared requirement list of the entry (same meaning as `requires`), so every\n * consumer of the scanned entry (`add`, `install`, `info`, `check`, `doctor`) sees it.\n * A requirement the file already declares is not repeated, by {@link requirementKey}\n * identity: the file's bare `report-table` and the manifest's `skill:@pub/report-table`\n * are one requirement when `pub` is the entry's own publisher.\n */\nfunction mergeManifestDependencies(entry: CatalogEntry, dependencies: readonly string[]): void {\n  entry.requires = dedupeRequirements(\n    [...entry.requires, ...dependencies.map((raw) => parseDep(raw))],\n    entry.publisher,\n  );\n}\n\n/**\n * Walk `root` recursively and return a `CatalogEntry` for every recognized asset manifest found.\n *\n * Recognized filenames: `SKILL.md`, `AGENT.md`, `agent.yaml`, `CONTRACT.md`, `MCP.md`,\n * `CONNECTOR.md`, `knowledge.yaml`, `*.prompt.md`, `*.preset.yaml`, `*.flow.yaml`, `*.flow.json`.\n *\n * When two entries share the same `kind:name` key, the one with the alphabetically\n * later source path wins (consistent with catalog precedence rules), unless\n * {@link ScanOptions.keepDuplicates} asks for every copy.\n *\n * **Async and bounded since #454.** `root` can resolve onto the rclone FUSE mount\n * (a `sources[].path` under `/skaile/workspace`), and the walk follows symlinks, so\n * even an off-mount root can descend into one. Every `opendir`/`stat`/`readFile`\n * is deadline-bounded and the walk is capped by depth, entry count, a wall-clock\n * budget, and an ancestor-inode set — see {@link walkDir}. Hitting any bound reports\n * a {@link WalkTruncation} through {@link WalkOptions.onTruncate} (a `warn` by\n * default); the returned array is then a **partial** scan, never a complete one.\n *\n * A manifest that cannot be read within its deadline is skipped rather than\n * failing the whole scan — one unreachable file must not cost the whole catalog.\n *\n * **Per-asset publisher.** When `root` holds a `skaile.manifest.yaml` whose `assets[]`\n * entry names a `publisher` for a scanned `kind`/`name`, that publisher replaces\n * `repoName` on the produced entry — the same identity the library index and\n * `library create --publisher` write, so `kind:@<publisher>/<name>` resolves.\n *\n * **Per-asset dependencies.** The same entry's `dependencies` (`kind:@<publisher>/name[#pin]`)\n * are appended to the produced entry's `requires`, next to the file's own `requires`.\n *\n * @param root - Absolute path to the directory tree to scan\n * @param repoName - Publisher attached to every produced entry without a per-asset override\n * @param options - Walk bounds and truncation sink; see {@link WalkOptions}\n * @returns Array of deduplicated `CatalogEntry` objects, one per manifest file\n * @docLink packages/core/concepts#scan-directory\n */\nexport async function scanDirectory(\n  root: string,\n  repoName: string,\n  options: ScanOptions,\n): Promise<CatalogEntry[]> {\n  const entries = new Map<string, CatalogEntry>();\n  const copies: CatalogEntry[] = [];\n  const onTruncate = options.onTruncate ?? warnTruncation;\n  const reported = new Set<WalkTruncation[\"reason\"]>();\n  const relay = (info: WalkTruncation) => {\n    reported.add(info.reason);\n    onTruncate(info);\n  };\n  const opTimeoutMs = options.opTimeoutMs ?? fsDeadlineMs();\n  const manifestOverrides = await readManifestAssetOverrides(root, opTimeoutMs);\n\n  function add(e: CatalogEntry): void {\n    // Boundary normalization: a third-party source we don't control may name an\n    // asset with a human-styled identity (\"Complex App\"). Slugify it to a\n    // canonical name so the ref it produces parses, preserving the original on\n    // `metadata.displayName` for display. No-op for already-canonical names.\n    normalizeEntryName(e);\n    const key = `${e.kind}:${e.name}`;\n    const override = manifestOverrides[key];\n    if (override?.publisher) e.publisher = override.publisher;\n    if (override) mergeManifestDependencies(e, override.dependencies);\n    if (options.keepDuplicates) {\n      copies.push(e);\n      return;\n    }\n    const existing = entries.get(key);\n    if (!existing) {\n      entries.set(key, e);\n      return;\n    }\n    // Among duplicates, alphabetically later source path wins\n    if (e.source > existing.source) entries.set(key, e);\n  }\n\n  for await (const { path: filePath, name } of walkDir(root, {\n    ...options,\n    opTimeoutMs,\n    onTruncate: relay,\n  })) {\n    if (!isManifestName(name)) continue;\n    const content = await tryWithFsDeadline(\n      `readFile ${filePath}`,\n      () => readFile(filePath, \"utf8\"),\n      null,\n      opTimeoutMs,\n    );\n    if (content === null) {\n      // Unreadable or past its deadline — the catalog loses this asset, not the\n      // whole scan. Reported once so a wedged mount is visible in the logs.\n      if (!reported.has(\"unreadable\")) relay({ reason: \"unreadable\", path: filePath });\n      continue;\n    }\n    try {\n      const entry = entryFromManifest(name, content, filePath, repoName, options.knownKinds);\n      if (entry) add(entry);\n    } catch (err) {\n      if (err instanceof ManifestKindError) {\n        (options.onDiagnostic ?? warnDiagnostic)(manifestKindDiagnostic(err));\n      }\n    }\n  }\n\n  return options.keepDuplicates ? copies : [...entries.values()];\n}\n"]}

package/dist/{chunk-4PTSR4UU.js → chunk-Y63UQZ7P.js}

@@ -1,4 +1,4 @@
-import { findAiAssetsRoot } from './chunk-2LWYNQK7.js';
+import { findAiAssetsRoot } from './chunk-HOHUEKES.js';
 
 // workspace-plugin/src/utils/ai-assets.ts
 function findAiAssetsRoot2(startDir) {
@@ -6,5 +6,5 @@ function findAiAssetsRoot2(startDir) {
 }
 
 export { findAiAssetsRoot2 as findAiAssetsRoot };
-//# sourceMappingURL=chunk-4PTSR4UU.js.map
-//# sourceMappingURL=chunk-4PTSR4UU.js.map
+//# sourceMappingURL=chunk-Y63UQZ7P.js.map
+//# sourceMappingURL=chunk-Y63UQZ7P.js.map

package/dist/{chunk-4PTSR4UU.js.map → chunk-Y63UQZ7P.js.map}

@@ -1 +1 @@
-{"version":3,"sources":["../workspace-plugin/src/utils/ai-assets.ts"],"names":["findAiAssetsRoot"],"mappings":";;;AA+BO,SAASA,kBAAiB,QAAA,EAA0C;AACzE,EAAA,OAAO,iBAAuB,QAAQ,CAAA;AACxC","file":"chunk-4PTSR4UU.js","sourcesContent":["// utils/ai-assets.ts\n// Shared utility for locating the ai-assets root directory.\n//\n// This is NOT a startup path (an earlier comment here claimed it was). Every\n// caller is an agent-invokable tool in `tools/flows.ts` / `tools/skills.ts`, so\n// the walk runs on a request path inside the long-lived `skaile serve` process,\n// once per tool invocation. With `projectDir = /skaile` the upward walk passes\n// directly beside the rclone FUSE workspace mount, so a synchronous `statSync`\n// here parks the whole event loop when that mount wedges — the failure mode\n// behind the 2026-08-07 outages. See issue #454.\nimport { findAiAssetsRoot as findAiAssetsRootShared } from \"@skaile/workspaces/asset-manager/catalog-deployer\";\n\n/**\n * Walk up from `startDir` looking for an `ai-assets/` directory.\n *\n * Delegates to the shared implementation in `asset-manager/catalog-deployer`,\n * which is async, deadline-bounded, level-capped, and refuses a candidate that\n * resolves at or under a workspace mount (continuing upward so a legitimate\n * parent still wins).\n *\n * @param startDir - Absolute path to begin the upward search from (typically\n *   the skaile `projectDir`).\n * Note the upward walk is now level-capped rather than running to the\n * filesystem root. Six levels covers every real layout and stops an\n * unbounded climb across mount boundaries.\n *\n * @returns Absolute path to the first usable `ai-assets/` directory found, or\n *   `null` if no match exists within the cap.\n *\n * @docLink packages/workspace-plugin/concepts#workspaceplugin-lifecycle\n */\nexport function findAiAssetsRoot(startDir: string): Promise<string | null> {\n  return findAiAssetsRootShared(startDir);\n}\n"]}
+{"version":3,"sources":["../workspace-plugin/src/utils/ai-assets.ts"],"names":["findAiAssetsRoot"],"mappings":";;;AA+BO,SAASA,kBAAiB,QAAA,EAA0C;AACzE,EAAA,OAAO,iBAAuB,QAAQ,CAAA;AACxC","file":"chunk-Y63UQZ7P.js","sourcesContent":["// utils/ai-assets.ts\n// Shared utility for locating the ai-assets root directory.\n//\n// This is NOT a startup path (an earlier comment here claimed it was). Every\n// caller is an agent-invokable tool in `tools/flows.ts` / `tools/skills.ts`, so\n// the walk runs on a request path inside the long-lived `skaile serve` process,\n// once per tool invocation. With `projectDir = /skaile` the upward walk passes\n// directly beside the rclone FUSE workspace mount, so a synchronous `statSync`\n// here parks the whole event loop when that mount wedges — the failure mode\n// behind the 2026-08-07 outages. See issue #454.\nimport { findAiAssetsRoot as findAiAssetsRootShared } from \"@skaile/workspaces/asset-manager/catalog-deployer\";\n\n/**\n * Walk up from `startDir` looking for an `ai-assets/` directory.\n *\n * Delegates to the shared implementation in `asset-manager/catalog-deployer`,\n * which is async, deadline-bounded, level-capped, and refuses a candidate that\n * resolves at or under a workspace mount (continuing upward so a legitimate\n * parent still wins).\n *\n * @param startDir - Absolute path to begin the upward search from (typically\n *   the skaile `projectDir`).\n * Note the upward walk is now level-capped rather than running to the\n * filesystem root. Six levels covers every real layout and stops an\n * unbounded climb across mount boundaries.\n *\n * @returns Absolute path to the first usable `ai-assets/` directory found, or\n *   `null` if no match exists within the cap.\n *\n * @docLink packages/workspace-plugin/concepts#workspaceplugin-lifecycle\n */\nexport function findAiAssetsRoot(startDir: string): Promise<string | null> {\n  return findAiAssetsRootShared(startDir);\n}\n"]}