@skaile/workspaces 5.7.0 → 5.9.0

package/dist/{chunk-SWO25LTO.js.map → chunk-GB7WDMH2.js.map}

@@ -1 +1 @@
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* Runtime asset resolution — read `skaile.yaml`, scan all declared repositories\n * (including the built-in `factory-assets/` directory as an implicit default),\n * and produce a unified view of connector catalog entries plus the implicit refs\n * that the `skaile.yaml` `connectors:` section adds to the dependency graph.\n *\n * This module is the single source of truth for \"which connectors does this\n * project see at runtime, and where do their implementations live on disk\".\n * Both the runner (serve, REPL, flow) and the platform's mid-session\n * `add_resource` flow consume `RuntimeAssetsResult.catalogEntries` and pass\n * it into `ConnectorManager` for catalog-based resolution.\n *\n * `factory-assets/` is the single first-party content tree (built-in connectors\n * + first-party skills + bundles) shipped inside the `@skaile/workspaces`\n * package — not a standalone package.\n *\n * It resolves to an **ordered list of roots** ({@link factoryAssetRoots}), not a\n * single dir. The bundled tree is always the baseline; an optional\n * `SKAILE_FACTORY_ASSETS_DIR` (legacy: `SKAILE_BASE_ASSETS_DIR`) is layered\n * **in front** as an additive override source — the agent container points it at\n * `/app/factory-assets/` (or a bind-mounted host dir) to ship updated skills /\n * flows / bundles / connector manifests without rebuilding the image. The two\n * roots resolve uniformly across every consumer (connector catalog scan, skill /\n * flow / completion discovery, the asset-manager factory source):\n *   1. `SKAILE_FACTORY_ASSETS_DIR` env dir, when set and existing (override layer).\n *   2. the bundled tree via {@link resolvePackagedAssetsDir} — the in-repo source\n *      `packages/workspaces/factory-assets/` during dev, else the published\n *      `dist/factory-assets/` after install (always-present baseline).\n *\n * Override semantics are **env-first**: on a name conflict the env root wins and\n * the bundled root fills the rest. Connector *code* still loads via the package's\n * static `exports` map, so the env root can override/add skills, flows, bundles,\n * and connector **manifests/metadata**, but cannot ship a new executable\n * connector — its `.js` is not on the package's import graph.\n */\n\nimport { existsSync, readFileSync } from \"node:fs\";\nimport { lstat, stat } from \"node:fs/promises\";\nimport { createRequire } from \"node:module\";\nimport { dirname, join, resolve as resolvePath } from \"node:path\";\nimport { fileURLToPath } from \"node:url\";\nimport { tryWithFsDeadline } from \"./fs-deadline.js\";\nimport { scanDirectory } from \"./manifest.js\";\nimport type { CatalogEntry } from \"./models.js\";\nimport { getGlobalCacheDir, readLinks, sourceCacheKey } from \"./repo-manager.js\";\nimport type { SourceDeclaration, SourceEntry } from \"./workspace-config.js\";\nimport { resolveSkWorkspaceConfig } from \"./workspace-config.js\";\n\n/**\n * Map declared `sources[]` to internal `SourceDeclaration`s keyed by the\n * collision-free {@link sourceCacheKey} (`<host>/<owner>/<repo>`), pointing at\n * the unified machine-cache clone path (`getGlobalCacheDir()/<key>/`). Keyed by\n * the same function every other cache writer/reader uses so the path resolves.\n */\nfunction sourcesToDeclarations(\n  sources: SourceEntry[] | undefined,\n): Record<string, SourceDeclaration> {\n  const sourcesDir = getGlobalCacheDir();\n  const out: Record<string, SourceDeclaration> = {};\n  for (const s of sources ?? []) {\n    const key = sourceCacheKey(s.url);\n    if (out[key]) continue;\n    out[key] = { path: join(sourcesDir, key), url: s.url, branch: s.pin };\n  }\n  return out;\n}\n\n// ─── Types ────────────────────────────────────────────────────────────────────\n\n/**\n * Catalog entry filtered to mount/connector kinds. Same shape as `CatalogEntry`.\n * @docLink packages/core/concepts#runtime-catalog-entry\n */\nexport type RuntimeCatalogEntry = CatalogEntry;\n\n/**\n * Implicit catalog reference derived from a `connectors:` declaration in `skaile.yaml`.\n * Each connector driver becomes an implicit ref that must be resolved in the catalog.\n * @docLink packages/core/concepts#runtime-asset-ref\n */\nexport interface RuntimeAssetRef {\n  kind: \"connector\";\n  /** Driver name — matches `RuntimeCatalogEntry.name`. */\n  name: string;\n  /** Source declaration id from `skaile.yaml`. */\n  declarationId: string;\n}\n\n/**\n * Aggregated npm packages required by all resolved mount/connector adapters.\n * Populated from `metadata.npm_deps` in each matched catalog entry.\n * @docLink packages/core/concepts#runtime-npm-deps\n */\nexport interface RuntimeNpmDeps {\n  required: string[];\n  optional: string[];\n}\n\n/**\n * Non-fatal warning emitted during `resolveRuntimeAssets` when a repo is unavailable\n * or a driver is not found in any catalog.\n * @docLink packages/core/concepts#runtime-asset-warning\n */\nexport interface RuntimeAssetWarning {\n  /** Stable code for filtering / structured logging. */\n  code: \"missing_driver\" | \"repo_unavailable\" | \"invalid_repo_decl\";\n  message: string;\n  /** Declaration id when applicable. */\n  declarationId?: string;\n  /** Driver / repository name when applicable. */\n  name?: string;\n}\n\n/**\n * Repository name used for the implicit built-in `factory-assets` catalog entry\n * (the in-package connector tree).\n * @docLink packages/core/concepts#factory-assets-repo-name\n */\nexport const FACTORY_ASSETS_REPO_NAME = \"factory-assets\";\n\n/**\n * Repository name for the optional `SKAILE_FACTORY_ASSETS_DIR` override layer,\n * scanned ahead of (and overriding) the bundled {@link FACTORY_ASSETS_REPO_NAME}.\n */\nconst FACTORY_ASSETS_OVERRIDE_REPO_NAME = \"factory-assets:override\";\n\n/**\n * Result of `resolveRuntimeAssets`.\n * The same object is mutated in place by `refresh()`, allowing callers to hold\n * a stable reference and observe updates after a new repository is cloned or\n * a driver is installed mid-session.\n * @docLink packages/core/concepts#runtime-assets-result\n */\nexport interface RuntimeAssetsResult {\n  catalogEntries: RuntimeCatalogEntry[];\n  implicitRefs: RuntimeAssetRef[];\n  requiredNpmDeps: RuntimeNpmDeps;\n  warnings: RuntimeAssetWarning[];\n  /** Re-scan repositories and re-derive implicit refs. Mutates in place. */\n  refresh(): Promise<void>;\n  /**\n   * Catalog lookup. When `kind` is omitted and multiple entries share the\n   * `name`, returns `undefined` (caller must disambiguate).\n   */\n  findEntry(query: { kind?: \"connector\"; name: string }): RuntimeCatalogEntry | undefined;\n}\n\n// ─── Public API ───────────────────────────────────────────────────────────────\n\n/**\n * Resolve all runtime assets visible to a project by scanning declared repositories.\n *\n * Reads `skaile.yaml`, scans every declared repository (plus the implicit\n * built-in `factory-assets` repo), and derives implicit refs from `mounts:` /\n * `connectors:` declarations. Does not clone or install anything — purely a\n * read-only scan of what is already on disk. URL-only repositories that have\n * not been cloned yet are reported as `repo_unavailable` warnings.\n *\n * @param projectDir - Absolute path to the project workspace root\n * @returns `RuntimeAssetsResult` with catalog entries, implicit refs, npm deps, and warnings\n * @docLink packages/core/concepts#resolve-runtime-assets\n */\nexport async function resolveRuntimeAssets(projectDir: string): Promise<RuntimeAssetsResult> {\n  const result: RuntimeAssetsResult = {\n    catalogEntries: [],\n    implicitRefs: [],\n    requiredNpmDeps: { required: [], optional: [] },\n    warnings: [],\n    refresh: async () => {\n      await populate(projectDir, result);\n    },\n    findEntry: (query) => findCatalogEntry(result.catalogEntries, query),\n  };\n\n  await populate(projectDir, result);\n  return result;\n}\n\n/**\n * Resolve the ordered list of on-disk roots for the built-in `factory-assets`\n * tree (built-in connectors + first-party skills + bundles). This is the single\n * shared resolver every consumer goes through, so the env override and the\n * bundled baseline are honoured uniformly.\n *\n * Order (env-first = override-wins):\n * 1. `SKAILE_FACTORY_ASSETS_DIR` env dir (legacy: `SKAILE_BASE_ASSETS_DIR`),\n *    when set and existing — an additive override layer.\n * 2. {@link resolvePackagedAssetsDir} — the bundled tree (in-repo source in dev,\n *    `dist/factory-assets/` after install). Always-present baseline.\n *\n * Returns `[]` only when the package cannot be located at all. De-duplicated, so\n * pointing the env var at the bundled dir collapses to one root.\n *\n * @docLink packages/core/concepts#resolve-factory-assets-root\n */\nexport function factoryAssetRoots(): string[] {\n  const roots: string[] = [];\n  const envDir = process.env.SKAILE_FACTORY_ASSETS_DIR ?? process.env.SKAILE_BASE_ASSETS_DIR;\n  // Deliberately still synchronous after #454: both candidates are\n  // container-local (the image's `/app/factory-assets/`, or the installed\n  // package tree resolved by `resolvePackagedAssetsDir`), never the FUSE\n  // workspace mount. The mount-reachable probes on this module's scan path —\n  // the project-relative `sources[].path` candidates in `resolveRepoDir` — are\n  // async and deadline-bounded.\n  if (envDir && existsSync(envDir)) roots.push(resolvePath(envDir));\n  const bundled = resolvePackagedAssetsDir(\"factory-assets\");\n  if (bundled) roots.push(bundled);\n  return [...new Set(roots)];\n}\n\n/**\n * Resolve the primary on-disk root of the `factory-assets` tree — the first of\n * {@link factoryAssetRoots} (the env override when set, else the bundled tree).\n * Prefer {@link factoryAssetRoots} when you need to scan every layer; this\n * single-dir form is for callers that want one canonical path.\n *\n * @returns Absolute path to the highest-precedence `factory-assets` directory\n * @throws When no root can be located\n * @docLink packages/core/concepts#resolve-factory-assets-root\n */\nexport function resolveFactoryAssetsRoot(): string {\n  const hit = resolveFactoryAssetsRootOrNull();\n  if (hit) return hit;\n\n  throw new Error(\n    `Cannot resolve the factory-assets directory. ` +\n      `Set SKAILE_FACTORY_ASSETS_DIR to the on-disk path, ` +\n      `ensure @skaile/workspaces is installed, ` +\n      `or run from within the @skaile/workspaces package tree.`,\n  );\n}\n\n/**\n * Non-throwing variant of {@link resolveFactoryAssetsRoot}: the same\n * env-then-packaged resolution tiers, returning `null` instead of throwing when\n * none locate the directory. Callers that treat a missing factory tree as a\n * soft \"not present\" (e.g. the asset-manager's implicit-source injection) MUST\n * use this so they honour the `SKAILE_FACTORY_ASSETS_DIR` container override\n * identically to the runtime path.\n */\nexport function resolveFactoryAssetsRootOrNull(): string | null {\n  return factoryAssetRoots()[0] ?? null;\n}\n\n/**\n * Resolve the `@skaile/workspaces` package root — the directory containing its\n * `package.json`. Tries `require.resolve` first (works when installed as a\n * dependency *and* in-repo via the self-reference), then walks upward from this\n * module looking for a `package.json` whose `name` is `@skaile/workspaces`\n * (bounded to 8 levels). Returns `null` when neither locates it.\n *\n * The single source of truth for finding content shipped inside the package —\n * the unified `factory-assets/` tree (built-in connectors + first-party skills\n * + bundles) resolves through {@link resolvePackagedAssetsDir} on top of this.\n *\n * Memoized: the package location is immutable for the process lifetime, but\n * this sits on the CLI hot path (every `findSkills` / flow / completion call\n * funnels through here), so the `require.resolve` + upward `package.json` walk\n * runs once. `undefined` = not yet computed.\n *\n * @docLink packages/core/concepts#resolve-factory-assets-root\n */\nlet workspacesPackageRootCache: string | null | undefined;\n\nexport function resolveWorkspacesPackageRoot(): string | null {\n  if (workspacesPackageRootCache !== undefined) return workspacesPackageRootCache;\n  workspacesPackageRootCache = computeWorkspacesPackageRoot();\n  return workspacesPackageRootCache;\n}\n\nfunction computeWorkspacesPackageRoot(): string | null {\n  try {\n    const require = createRequire(import.meta.url);\n    return dirname(require.resolve(\"@skaile/workspaces/package.json\"));\n  } catch {\n    // Fall through to the workspace walk.\n  }\n  let dir: string;\n  try {\n    dir = dirname(fileURLToPath(import.meta.url));\n  } catch {\n    return null;\n  }\n  for (let i = 0; i < 8; i++) {\n    const pkgPath = join(dir, \"package.json\");\n    if (existsSync(pkgPath)) {\n      try {\n        const pkg = JSON.parse(readFileSync(pkgPath, \"utf-8\")) as { name?: string };\n        if (pkg.name === \"@skaile/workspaces\") return dir;\n      } catch {\n        // Ignore malformed package.json and keep walking.\n      }\n    }\n    const parent = dirname(dir);\n    if (parent === dir) break;\n    dir = parent;\n  }\n  return null;\n}\n\n/**\n * Locate a content-asset directory inside the package. Prefers the in-repo\n * **source** dir `<pkgRoot>/<subdir>` when present — in a dev checkout it is the\n * full tree (e.g. `factory-assets/` keeps the connector `.ts` entry files that\n * `dist/` does not) — then the published `dist/<subdir>` copy (what\n * `files: [\"dist\"]` ships, the only one present after `npm i`). Returns `null`\n * when neither exists.\n *\n * `factory-assets/` resolves to the source tree in dev (code + skills + bundles)\n * and to `dist/factory-assets` post-install (compiled connectors + copied\n * manifests/skills/bundles).\n *\n * @param subdir - `\"factory-assets\"` | …\n * @docLink packages/core/concepts#resolve-factory-assets-root\n */\nexport function resolvePackagedAssetsDir(subdir: string): string | null {\n  const root = resolveWorkspacesPackageRoot();\n  if (!root) return null;\n  for (const cand of [join(root, subdir), join(root, \"dist\", subdir)]) {\n    if (existsSync(cand)) return cand;\n  }\n  return null;\n}\n\n// ─── Internals ────────────────────────────────────────────────────────────────\n\nconst CONNECTOR_SCAN_KINDS: ReadonlySet<string> = new Set([\"connector\"]);\n\nasync function populate(projectDir: string, target: RuntimeAssetsResult): Promise<void> {\n  target.catalogEntries = [];\n  target.implicitRefs = [];\n  target.requiredNpmDeps = { required: [], optional: [] };\n  target.warnings = [];\n\n  const config = resolveSkWorkspaceConfig(projectDir);\n  // Connector catalog scan runs over the project's declared sources[] (resolved\n  // to their machine-cache clone paths) plus the implicit factory-assets repo.\n  const repositories = buildEffectiveRepositories(sourcesToDeclarations(config.sources));\n  const links = readLinks(projectDir);\n\n  // Scan each repository for connector entries.\n  for (const [name, decl] of Object.entries(repositories)) {\n    const repoDir = await resolveRepoDir(name, decl, projectDir, links);\n    if (!repoDir) {\n      target.warnings.push({\n        code: \"repo_unavailable\",\n        name,\n        message: repoUnavailableMessage(name, decl),\n      });\n      continue;\n    }\n    try {\n      // Both factory layers carry the same `factory-assets` provenance — the\n      // override repo is an internal scan-order device, not a distinct source.\n      const repoName = name === FACTORY_ASSETS_OVERRIDE_REPO_NAME ? FACTORY_ASSETS_REPO_NAME : name;\n      // Only connector descriptors are consumed here, so only that kind is\n      // \"known\": typed manifests of any other kind are irrelevant to this scan.\n      const scanned = await scanDirectory(repoDir, repoName, {\n        knownKinds: CONNECTOR_SCAN_KINDS,\n        onDiagnostic: () => {},\n      });\n      const entries = scanned.filter((e) => e.kind === \"connector\");\n      target.catalogEntries.push(...entries);\n    } catch (err) {\n      target.warnings.push({\n        code: \"repo_unavailable\",\n        name,\n        message: `Failed to scan repository \"${name}\" at ${repoDir}: ${\n          err instanceof Error ? err.message : String(err)\n        }`,\n      });\n    }\n  }\n\n  // De-duplicate by (kind, name), keeping the first occurrence. Scan order is\n  // declared sources → env override → bundled baseline, so an env-supplied\n  // connector manifest overrides the bundled one and the bundled one fills the\n  // rest (the override layer can refresh built-in manifests in place).\n  const seen = new Set<string>();\n  target.catalogEntries = target.catalogEntries.filter((e) => {\n    const key = `${e.kind}:${e.name}`;\n    if (seen.has(key)) return false;\n    seen.add(key);\n    return true;\n  });\n\n  // Derive implicit refs from skaile.yaml connectors.\n  for (const c of config.connectors ?? []) {\n    target.implicitRefs.push({ kind: \"connector\", name: c.driver, declarationId: c.id });\n  }\n\n  // Validate refs and aggregate npm deps.\n  const requiredSet = new Set<string>();\n  const optionalSet = new Set<string>();\n  for (const ref of target.implicitRefs) {\n    const entry = findCatalogEntry(target.catalogEntries, ref);\n    if (!entry) {\n      target.warnings.push({\n        code: \"missing_driver\",\n        declarationId: ref.declarationId,\n        name: ref.name,\n        message:\n          `Unknown ${ref.kind} driver \"${ref.name}\" referenced by ${ref.kind} \"${ref.declarationId}\". ` +\n          `Run \\`skaile ${ref.kind} catalog\\` to see available drivers, ` +\n          `or declare a repository in skaile.yaml that provides this driver.`,\n      });\n      continue;\n    }\n    const npm = (entry.metadata?.npm_deps ?? {}) as { required?: string[]; optional?: string[] };\n    for (const p of npm.required ?? []) requiredSet.add(p);\n    for (const p of npm.optional ?? []) optionalSet.add(p);\n  }\n  target.requiredNpmDeps.required = [...requiredSet];\n  target.requiredNpmDeps.optional = [...optionalSet];\n}\n\n/**\n * Build the effective `repositories` map: caller's declarations first, then the\n * implicit built-in `factory-assets` repos. Each {@link factoryAssetRoots} layer\n * becomes its own repo, the env override inserted **before** the bundled\n * baseline so its connector entries win on the first-match dedup downstream.\n * When the package cannot be located at all, a path-less sentinel under\n * {@link FACTORY_ASSETS_REPO_NAME} drives the `repo_unavailable` warning.\n */\nfunction buildEffectiveRepositories(\n  declared: Record<string, SourceDeclaration> | undefined,\n): Record<string, SourceDeclaration> {\n  const result: Record<string, SourceDeclaration> = { ...(declared ?? {}) };\n  const roots = factoryAssetRoots();\n  if (roots.length === 0) {\n    // Surface as a warning during scan rather than throwing here — let the\n    // caller decide whether factory-assets is required. resolveRepoDir() /\n    // repoUnavailableMessage re-discover the failure and emit it.\n    if (!result[FACTORY_ASSETS_REPO_NAME]) result[FACTORY_ASSETS_REPO_NAME] = { path: \"\" };\n    return result;\n  }\n  // override-first when both layers exist, so the env root's entries are scanned\n  // (and matched) ahead of the bundled baseline.\n  const keys =\n    roots.length > 1\n      ? [FACTORY_ASSETS_OVERRIDE_REPO_NAME, FACTORY_ASSETS_REPO_NAME]\n      : [FACTORY_ASSETS_REPO_NAME];\n  roots.forEach((dir, i) => {\n    const key = keys[i] ?? `${FACTORY_ASSETS_REPO_NAME}:${i}`;\n    if (!result[key]) result[key] = { path: dir };\n  });\n  return result;\n}\n\n/**\n * Resolve a repository declaration to an on-disk directory. Order:\n *   1. Linked override (`.skaile/links.yaml`).\n *   2. Local `path` — relative to `projectDir`.\n *   3. Cloned URL repo at `.skaile/cache/sources/<name>/` (must already exist).\n *\n * Returns `null` when none of these resolve. Does not clone.\n *\n * **Async and deadline-bounded since #454.** Every candidate here is a\n * project-relative or operator-supplied path, so a `sources[].path` of\n * `workspace/my-assets` resolves onto the rclone FUSE mount — the same tree the\n * scan that follows walks. Probing it with `existsSync`/`lstatSync` would park\n * the `skaile serve` event loop *before* the (now async) scan ever ran, which\n * would leave the H2 fix meaningless on the very declaration that triggers it.\n * A probe that misses its deadline reads as \"unavailable\", which is what the\n * caller already does with an absent path — it becomes a `repo_unavailable`\n * warning rather than a stall.\n */\nasync function resolveRepoDir(\n  name: string,\n  decl: SourceDeclaration,\n  projectDir: string,\n  links: Record<string, string>,\n): Promise<string | null> {\n  // 1. Linked override\n  const linked = links[name];\n  if (linked && (await pathExists(linked))) return linked;\n\n  // 2. Local path\n  if (decl.path) {\n    const resolved = resolvePath(projectDir, decl.path);\n    return (await pathExists(resolved)) ? resolved : null;\n  }\n\n  // 3. URL repo cloned to project's .skaile/cache/sources/<name> — the\n  //    project-local clone dir (often a symlink into the global cache, which\n  //    lives at getGlobalCacheDir()); NOT the global clone root itself.\n  if (decl.url) {\n    const projectDest = join(projectDir, \".skaile\", \"cache\", \"sources\", name);\n    // One `lstat` answers both questions the pre-#454 `existsSync` + `lstatSync`\n    // pair asked, and `lstat` (not `stat`) keeps the \"a symlink into the global\n    // cache counts\" behaviour intact.\n    const found = await tryWithFsDeadline(\n      `lstat ${projectDest}`,\n      async () => {\n        await lstat(projectDest);\n        return true;\n      },\n      false,\n    );\n    return found ? projectDest : null;\n  }\n\n  return null;\n}\n\n/** Deadline-bounded `existsSync` replacement — a wedged mount reads as absent. */\nfunction pathExists(path: string): Promise<boolean> {\n  return tryWithFsDeadline(\n    `stat ${path}`,\n    async () => {\n      await stat(path);\n      return true;\n    },\n    false,\n  );\n}\n\nfunction repoUnavailableMessage(name: string, decl: SourceDeclaration): string {\n  if (name === FACTORY_ASSETS_REPO_NAME && !decl.path && !decl.url) {\n    return (\n      `Cannot resolve the built-in factory-assets. ` +\n      `Set SKAILE_FACTORY_ASSETS_DIR or ensure @skaile/workspaces is installed.`\n    );\n  }\n  if (decl.url) {\n    return `Repository \"${name}\" (${decl.url}) is not available. 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The bundled tree is always the baseline; an optional\n * `SKAILE_FACTORY_ASSETS_DIR` (legacy: `SKAILE_BASE_ASSETS_DIR`) is layered\n * **in front** as an additive override source — the agent container points it at\n * `/app/factory-assets/` (or a bind-mounted host dir) to ship updated skills /\n * flows / bundles / connector manifests without rebuilding the image. The two\n * roots resolve uniformly across every consumer (connector catalog scan, skill /\n * flow / completion discovery, the asset-manager factory source):\n *   1. `SKAILE_FACTORY_ASSETS_DIR` env dir, when set and existing (override layer).\n *   2. the bundled tree via {@link resolvePackagedAssetsDir} — the in-repo source\n *      `packages/workspaces/factory-assets/` during dev, else the published\n *      `dist/factory-assets/` after install (always-present baseline).\n *\n * Override semantics are **env-first**: on a name conflict the env root wins and\n * the bundled root fills the rest. Connector *code* still loads via the package's\n * static `exports` map, so the env root can override/add skills, flows, bundles,\n * and connector **manifests/metadata**, but cannot ship a new executable\n * connector — its `.js` is not on the package's import graph.\n */\n\nimport { existsSync, readFileSync } from \"node:fs\";\nimport { lstat, stat } from \"node:fs/promises\";\nimport { createRequire } from \"node:module\";\nimport { dirname, join, resolve as resolvePath } from \"node:path\";\nimport { fileURLToPath } from \"node:url\";\nimport { tryWithFsDeadline } from \"./fs-deadline.js\";\nimport { scanDirectory } from \"./manifest.js\";\nimport type { CatalogEntry } from \"./models.js\";\nimport { getGlobalCacheDir, readLinks, sourceCacheKey } from \"./repo-manager.js\";\nimport type { SourceDeclaration, SourceEntry } from \"./workspace-config.js\";\nimport { resolveSkWorkspaceConfig } from \"./workspace-config.js\";\n\n/**\n * Map declared `sources[]` to internal `SourceDeclaration`s keyed by the\n * collision-free {@link sourceCacheKey} (`<host>/<owner>/<repo>`), pointing at\n * the unified machine-cache clone path (`getGlobalCacheDir()/<key>/`). Keyed by\n * the same function every other cache writer/reader uses so the path resolves.\n */\nfunction sourcesToDeclarations(\n  sources: SourceEntry[] | undefined,\n): Record<string, SourceDeclaration> {\n  const sourcesDir = getGlobalCacheDir();\n  const out: Record<string, SourceDeclaration> = {};\n  for (const s of sources ?? []) {\n    const key = sourceCacheKey(s.url);\n    if (out[key]) continue;\n    out[key] = { path: join(sourcesDir, key), url: s.url, branch: s.pin };\n  }\n  return out;\n}\n\n// ─── Types ────────────────────────────────────────────────────────────────────\n\n/**\n * Catalog entry filtered to mount/connector kinds. Same shape as `CatalogEntry`.\n * @docLink packages/core/concepts#runtime-catalog-entry\n */\nexport type RuntimeCatalogEntry = CatalogEntry;\n\n/**\n * Implicit catalog reference derived from a `connectors:` declaration in `skaile.yaml`.\n * Each connector driver becomes an implicit ref that must be resolved in the catalog.\n * @docLink packages/core/concepts#runtime-asset-ref\n */\nexport interface RuntimeAssetRef {\n  kind: \"connector\";\n  /** Driver name — matches `RuntimeCatalogEntry.name`. */\n  name: string;\n  /** Source declaration id from `skaile.yaml`. */\n  declarationId: string;\n}\n\n/**\n * Aggregated npm packages required by all resolved mount/connector adapters.\n * Populated from `metadata.npm_deps` in each matched catalog entry.\n * @docLink packages/core/concepts#runtime-npm-deps\n */\nexport interface RuntimeNpmDeps {\n  required: string[];\n  optional: string[];\n}\n\n/**\n * Non-fatal warning emitted during `resolveRuntimeAssets` when a repo is unavailable\n * or a driver is not found in any catalog.\n * @docLink packages/core/concepts#runtime-asset-warning\n */\nexport interface RuntimeAssetWarning {\n  /** Stable code for filtering / structured logging. */\n  code: \"missing_driver\" | \"repo_unavailable\" | \"invalid_repo_decl\";\n  message: string;\n  /** Declaration id when applicable. */\n  declarationId?: string;\n  /** Driver / repository name when applicable. */\n  name?: string;\n}\n\n/**\n * Repository name used for the implicit built-in `factory-assets` catalog entry\n * (the in-package connector tree).\n * @docLink packages/core/concepts#factory-assets-repo-name\n */\nexport const FACTORY_ASSETS_REPO_NAME = \"factory-assets\";\n\n/**\n * Repository name for the optional `SKAILE_FACTORY_ASSETS_DIR` override layer,\n * scanned ahead of (and overriding) the bundled {@link FACTORY_ASSETS_REPO_NAME}.\n */\nconst FACTORY_ASSETS_OVERRIDE_REPO_NAME = \"factory-assets:override\";\n\n/**\n * Result of `resolveRuntimeAssets`.\n * The same object is mutated in place by `refresh()`, allowing callers to hold\n * a stable reference and observe updates after a new repository is cloned or\n * a driver is installed mid-session.\n * @docLink packages/core/concepts#runtime-assets-result\n */\nexport interface RuntimeAssetsResult {\n  catalogEntries: RuntimeCatalogEntry[];\n  implicitRefs: RuntimeAssetRef[];\n  requiredNpmDeps: RuntimeNpmDeps;\n  warnings: RuntimeAssetWarning[];\n  /** Re-scan repositories and re-derive implicit refs. 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URL-only repositories that have\n * not been cloned yet are reported as `repo_unavailable` warnings.\n *\n * @param projectDir - Absolute path to the project workspace root\n * @returns `RuntimeAssetsResult` with catalog entries, implicit refs, npm deps, and warnings\n * @docLink packages/core/concepts#resolve-runtime-assets\n */\nexport async function resolveRuntimeAssets(projectDir: string): Promise<RuntimeAssetsResult> {\n  const result: RuntimeAssetsResult = {\n    catalogEntries: [],\n    implicitRefs: [],\n    requiredNpmDeps: { required: [], optional: [] },\n    warnings: [],\n    refresh: async () => {\n      await populate(projectDir, result);\n    },\n    findEntry: (query) => findCatalogEntry(result.catalogEntries, query),\n  };\n\n  await populate(projectDir, result);\n  return result;\n}\n\n/**\n * Resolve the ordered list of on-disk roots for the built-in `factory-assets`\n * tree (built-in connectors + first-party skills + bundles). This is the single\n * shared resolver every consumer goes through, so the env override and the\n * bundled baseline are honoured uniformly.\n *\n * Order (env-first = override-wins):\n * 1. `SKAILE_FACTORY_ASSETS_DIR` env dir (legacy: `SKAILE_BASE_ASSETS_DIR`),\n *    when set and existing — an additive override layer.\n * 2. {@link resolvePackagedAssetsDir} — the bundled tree (in-repo source in dev,\n *    `dist/factory-assets/` after install). Always-present baseline.\n *\n * Returns `[]` only when the package cannot be located at all. De-duplicated, so\n * pointing the env var at the bundled dir collapses to one root.\n *\n * @docLink packages/core/concepts#resolve-factory-assets-root\n */\nexport function factoryAssetRoots(): string[] {\n  const roots: string[] = [];\n  const envDir = process.env.SKAILE_FACTORY_ASSETS_DIR ?? process.env.SKAILE_BASE_ASSETS_DIR;\n  // Deliberately still synchronous after #454: both candidates are\n  // container-local (the image's `/app/factory-assets/`, or the installed\n  // package tree resolved by `resolvePackagedAssetsDir`), never the FUSE\n  // workspace mount. The mount-reachable probes on this module's scan path —\n  // the project-relative `sources[].path` candidates in `resolveRepoDir` — are\n  // async and deadline-bounded.\n  if (envDir && existsSync(envDir)) roots.push(resolvePath(envDir));\n  const bundled = resolvePackagedAssetsDir(\"factory-assets\");\n  if (bundled) roots.push(bundled);\n  return [...new Set(roots)];\n}\n\n/**\n * Resolve the primary on-disk root of the `factory-assets` tree — the first of\n * {@link factoryAssetRoots} (the env override when set, else the bundled tree).\n * Prefer {@link factoryAssetRoots} when you need to scan every layer; this\n * single-dir form is for callers that want one canonical path.\n *\n * @returns Absolute path to the highest-precedence `factory-assets` directory\n * @throws When no root can be located\n * @docLink packages/core/concepts#resolve-factory-assets-root\n */\nexport function resolveFactoryAssetsRoot(): string {\n  const hit = resolveFactoryAssetsRootOrNull();\n  if (hit) return hit;\n\n  throw new Error(\n    `Cannot resolve the factory-assets directory. ` +\n      `Set SKAILE_FACTORY_ASSETS_DIR to the on-disk path, ` +\n      `ensure @skaile/workspaces is installed, ` +\n      `or run from within the @skaile/workspaces package tree.`,\n  );\n}\n\n/**\n * Non-throwing variant of {@link resolveFactoryAssetsRoot}: the same\n * env-then-packaged resolution tiers, returning `null` instead of throwing when\n * none locate the directory. Callers that treat a missing factory tree as a\n * soft \"not present\" (e.g. the asset-manager's implicit-source injection) MUST\n * use this so they honour the `SKAILE_FACTORY_ASSETS_DIR` container override\n * identically to the runtime path.\n */\nexport function resolveFactoryAssetsRootOrNull(): string | null {\n  return factoryAssetRoots()[0] ?? null;\n}\n\n/**\n * Resolve the `@skaile/workspaces` package root — the directory containing its\n * `package.json`. Tries `require.resolve` first (works when installed as a\n * dependency *and* in-repo via the self-reference), then walks upward from this\n * module looking for a `package.json` whose `name` is `@skaile/workspaces`\n * (bounded to 8 levels). Returns `null` when neither locates it.\n *\n * The single source of truth for finding content shipped inside the package —\n * the unified `factory-assets/` tree (built-in connectors + first-party skills\n * + bundles) resolves through {@link resolvePackagedAssetsDir} on top of this.\n *\n * Memoized: the package location is immutable for the process lifetime, but\n * this sits on the CLI hot path (every `findSkills` / flow / completion call\n * funnels through here), so the `require.resolve` + upward `package.json` walk\n * runs once. `undefined` = not yet computed.\n *\n * @docLink packages/core/concepts#resolve-factory-assets-root\n */\nlet workspacesPackageRootCache: string | null | undefined;\n\nexport function resolveWorkspacesPackageRoot(): string | null {\n  if (workspacesPackageRootCache !== undefined) return workspacesPackageRootCache;\n  workspacesPackageRootCache = computeWorkspacesPackageRoot();\n  return workspacesPackageRootCache;\n}\n\nfunction computeWorkspacesPackageRoot(): string | null {\n  try {\n    const require = createRequire(import.meta.url);\n    return dirname(require.resolve(\"@skaile/workspaces/package.json\"));\n  } catch {\n    // Fall through to the workspace walk.\n  }\n  let dir: string;\n  try {\n    dir = dirname(fileURLToPath(import.meta.url));\n  } catch {\n    return null;\n  }\n  for (let i = 0; i < 8; i++) {\n    const pkgPath = join(dir, \"package.json\");\n    if (existsSync(pkgPath)) {\n      try {\n        const pkg = JSON.parse(readFileSync(pkgPath, \"utf-8\")) as { name?: string };\n        if (pkg.name === \"@skaile/workspaces\") return dir;\n      } catch {\n        // Ignore malformed package.json and keep walking.\n      }\n    }\n    const parent = dirname(dir);\n    if (parent === dir) break;\n    dir = parent;\n  }\n  return null;\n}\n\n/**\n * Locate a content-asset directory inside the package. Prefers the in-repo\n * **source** dir `<pkgRoot>/<subdir>` when present — in a dev checkout it is the\n * full tree (e.g. `factory-assets/` keeps the connector `.ts` entry files that\n * `dist/` does not) — then the published `dist/<subdir>` copy (what\n * `files: [\"dist\"]` ships, the only one present after `npm i`). Returns `null`\n * when neither exists.\n *\n * `factory-assets/` resolves to the source tree in dev (code + skills + bundles)\n * and to `dist/factory-assets` post-install (compiled connectors + copied\n * manifests/skills/bundles).\n *\n * @param subdir - `\"factory-assets\"` | …\n * @docLink packages/core/concepts#resolve-factory-assets-root\n */\nexport function resolvePackagedAssetsDir(subdir: string): string | null {\n  const root = resolveWorkspacesPackageRoot();\n  if (!root) return null;\n  for (const cand of [join(root, subdir), join(root, \"dist\", subdir)]) {\n    if (existsSync(cand)) return cand;\n  }\n  return null;\n}\n\n// ─── Internals ────────────────────────────────────────────────────────────────\n\nconst CONNECTOR_SCAN_KINDS: ReadonlySet<string> = new Set([\"connector\"]);\n\nasync function populate(projectDir: string, target: RuntimeAssetsResult): Promise<void> {\n  target.catalogEntries = [];\n  target.implicitRefs = [];\n  target.requiredNpmDeps = { required: [], optional: [] };\n  target.warnings = [];\n\n  const config = resolveSkWorkspaceConfig(projectDir);\n  // Connector catalog scan runs over the project's declared sources[] (resolved\n  // to their machine-cache clone paths) plus the implicit factory-assets repo.\n  const repositories = buildEffectiveRepositories(sourcesToDeclarations(config.sources));\n  const links = readLinks(projectDir);\n\n  // Scan each repository for connector entries.\n  for (const [name, decl] of Object.entries(repositories)) {\n    const repoDir = await resolveRepoDir(name, decl, projectDir, links);\n    if (!repoDir) {\n      target.warnings.push({\n        code: \"repo_unavailable\",\n        name,\n        message: repoUnavailableMessage(name, decl),\n      });\n      continue;\n    }\n    try {\n      // Both factory layers carry the same `factory-assets` provenance — the\n      // override repo is an internal scan-order device, not a distinct source.\n      const repoName = name === FACTORY_ASSETS_OVERRIDE_REPO_NAME ? FACTORY_ASSETS_REPO_NAME : name;\n      // Only connector descriptors are consumed here, so only that kind is\n      // \"known\": typed manifests of any other kind are irrelevant to this scan.\n      const scanned = await scanDirectory(repoDir, repoName, {\n        knownKinds: CONNECTOR_SCAN_KINDS,\n        onDiagnostic: () => {},\n      });\n      const entries = scanned.filter((e) => e.kind === \"connector\");\n      target.catalogEntries.push(...entries);\n    } catch (err) {\n      target.warnings.push({\n        code: \"repo_unavailable\",\n        name,\n        message: `Failed to scan repository \"${name}\" at ${repoDir}: ${\n          err instanceof Error ? err.message : String(err)\n        }`,\n      });\n    }\n  }\n\n  // De-duplicate by (kind, name), keeping the first occurrence. Scan order is\n  // declared sources → env override → bundled baseline, so an env-supplied\n  // connector manifest overrides the bundled one and the bundled one fills the\n  // rest (the override layer can refresh built-in manifests in place).\n  const seen = new Set<string>();\n  target.catalogEntries = target.catalogEntries.filter((e) => {\n    const key = `${e.kind}:${e.name}`;\n    if (seen.has(key)) return false;\n    seen.add(key);\n    return true;\n  });\n\n  // Derive implicit refs from skaile.yaml connectors.\n  for (const c of config.connectors ?? []) {\n    target.implicitRefs.push({ kind: \"connector\", name: c.driver, declarationId: c.id });\n  }\n\n  // Validate refs and aggregate npm deps.\n  const requiredSet = new Set<string>();\n  const optionalSet = new Set<string>();\n  for (const ref of target.implicitRefs) {\n    const entry = findCatalogEntry(target.catalogEntries, ref);\n    if (!entry) {\n      target.warnings.push({\n        code: \"missing_driver\",\n        declarationId: ref.declarationId,\n        name: ref.name,\n        message:\n          `Unknown ${ref.kind} driver \"${ref.name}\" referenced by ${ref.kind} \"${ref.declarationId}\". ` +\n          `Run \\`skaile ${ref.kind} catalog\\` to see available drivers, ` +\n          `or declare a repository in skaile.yaml that provides this driver.`,\n      });\n      continue;\n    }\n    const npm = (entry.metadata?.npm_deps ?? {}) as { required?: string[]; optional?: string[] };\n    for (const p of npm.required ?? []) requiredSet.add(p);\n    for (const p of npm.optional ?? []) optionalSet.add(p);\n  }\n  target.requiredNpmDeps.required = [...requiredSet];\n  target.requiredNpmDeps.optional = [...optionalSet];\n}\n\n/**\n * Build the effective `repositories` map: caller's declarations first, then the\n * implicit built-in `factory-assets` repos. Each {@link factoryAssetRoots} layer\n * becomes its own repo, the env override inserted **before** the bundled\n * baseline so its connector entries win on the first-match dedup downstream.\n * When the package cannot be located at all, a path-less sentinel under\n * {@link FACTORY_ASSETS_REPO_NAME} drives the `repo_unavailable` warning.\n */\nfunction buildEffectiveRepositories(\n  declared: Record<string, SourceDeclaration> | undefined,\n): Record<string, SourceDeclaration> {\n  const result: Record<string, SourceDeclaration> = { ...(declared ?? {}) };\n  const roots = factoryAssetRoots();\n  if (roots.length === 0) {\n    // Surface as a warning during scan rather than throwing here — let the\n    // caller decide whether factory-assets is required. resolveRepoDir() /\n    // repoUnavailableMessage re-discover the failure and emit it.\n    if (!result[FACTORY_ASSETS_REPO_NAME]) result[FACTORY_ASSETS_REPO_NAME] = { path: \"\" };\n    return result;\n  }\n  // override-first when both layers exist, so the env root's entries are scanned\n  // (and matched) ahead of the bundled baseline.\n  const keys =\n    roots.length > 1\n      ? [FACTORY_ASSETS_OVERRIDE_REPO_NAME, FACTORY_ASSETS_REPO_NAME]\n      : [FACTORY_ASSETS_REPO_NAME];\n  roots.forEach((dir, i) => {\n    const key = keys[i] ?? `${FACTORY_ASSETS_REPO_NAME}:${i}`;\n    if (!result[key]) result[key] = { path: dir };\n  });\n  return result;\n}\n\n/**\n * Resolve a repository declaration to an on-disk directory. Order:\n *   1. Linked override (`.skaile/links.yaml`).\n *   2. Local `path` — relative to `projectDir`.\n *   3. Cloned URL repo at `.skaile/cache/sources/<name>/` (must already exist).\n *\n * Returns `null` when none of these resolve. Does not clone.\n *\n * **Async and deadline-bounded since #454.** Every candidate here is a\n * project-relative or operator-supplied path, so a `sources[].path` of\n * `workspace/my-assets` resolves onto the rclone FUSE mount — the same tree the\n * scan that follows walks. Probing it with `existsSync`/`lstatSync` would park\n * the `skaile serve` event loop *before* the (now async) scan ever ran, which\n * would leave the H2 fix meaningless on the very declaration that triggers it.\n * A probe that misses its deadline reads as \"unavailable\", which is what the\n * caller already does with an absent path — it becomes a `repo_unavailable`\n * warning rather than a stall.\n */\nasync function resolveRepoDir(\n  name: string,\n  decl: SourceDeclaration,\n  projectDir: string,\n  links: Record<string, string>,\n): Promise<string | null> {\n  // 1. Linked override\n  const linked = links[name];\n  if (linked && (await pathExists(linked))) return linked;\n\n  // 2. Local path\n  if (decl.path) {\n    const resolved = resolvePath(projectDir, decl.path);\n    return (await pathExists(resolved)) ? resolved : null;\n  }\n\n  // 3. URL repo cloned to project's .skaile/cache/sources/<name> — the\n  //    project-local clone dir (often a symlink into the global cache, which\n  //    lives at getGlobalCacheDir()); NOT the global clone root itself.\n  if (decl.url) {\n    const projectDest = join(projectDir, \".skaile\", \"cache\", \"sources\", name);\n    // One `lstat` answers both questions the pre-#454 `existsSync` + `lstatSync`\n    // pair asked, and `lstat` (not `stat`) keeps the \"a symlink into the global\n    // cache counts\" behaviour intact.\n    const found = await tryWithFsDeadline(\n      `lstat ${projectDest}`,\n      async () => {\n        await lstat(projectDest);\n        return true;\n      },\n      false,\n    );\n    return found ? projectDest : null;\n  }\n\n  return null;\n}\n\n/** Deadline-bounded `existsSync` replacement — a wedged mount reads as absent. */\nfunction pathExists(path: string): Promise<boolean> {\n  return tryWithFsDeadline(\n    `stat ${path}`,\n    async () => {\n      await stat(path);\n      return true;\n    },\n    false,\n  );\n}\n\nfunction repoUnavailableMessage(name: string, decl: SourceDeclaration): string {\n  if (name === FACTORY_ASSETS_REPO_NAME && !decl.path && !decl.url) {\n    return (\n      `Cannot resolve the built-in factory-assets. ` +\n      `Set SKAILE_FACTORY_ASSETS_DIR or ensure @skaile/workspaces is installed.`\n    );\n  }\n  if (decl.url) {\n    return `Repository \"${name}\" (${decl.url}) is not available. Register it as a Library Source via \\`skaile source add\\`.`;\n  }\n  if (decl.path) {\n    return `Repository \"${name}\" path not found: ${decl.path}`;\n  }\n  return `Repository \"${name}\" has neither url nor path.`;\n}\n\nfunction findCatalogEntry(\n  entries: RuntimeCatalogEntry[],\n  query: { kind?: \"connector\"; name: string },\n): RuntimeCatalogEntry | undefined {\n  if (query.kind) {\n    return entries.find((e) => e.kind === query.kind && e.name === query.name);\n  }\n  const matches = entries.filter((e) => e.name === query.name);\n  if (matches.length === 1) return matches[0];\n  // 0 or >1 with no kind — caller must disambiguate.\n  return undefined;\n}\n"]}

package/dist/{chunk-EU3Q5AQ4.js → chunk-GKMZ6THE.js}

@@ -1,11 +1,11 @@
 import { createSpinner } from './chunk-NESV47MF.js';
-import { logInfo, logWarn, TARGET_DEFAULT_HINT, logErr, logOk, colorRef, S, deferredWarnings, warnLegacyClaudeCopies, formatSoftDepHint } from './chunk-THEJJBOU.js';
-import { getKindRegistry } from './chunk-WIEC3ZE4.js';
-import { AssetManager } from './chunk-D5HOETOB.js';
-import { readLock } from './chunk-OOLT6HGP.js';
+import { logInfo, logWarn, TARGET_DEFAULT_HINT, logErr, logOk, colorRef, S, deferredWarnings, warnLegacyClaudeCopies, formatSoftDepHint } from './chunk-JZ5EHBPI.js';
+import { getKindRegistry } from './chunk-2FRUUDZY.js';
+import { AssetManager } from './chunk-IMKSM5NL.js';
+import { readLock } from './chunk-36AFURKZ.js';
 import { userConfigPath } from './chunk-L5VSIPQD.js';
 import { SUPPORTED_DRIVER_TARGETS } from './chunk-CPSIPIX7.js';
-import { parseAssetRef } from './chunk-O7VPNKYN.js';
+import { parseAssetRef } from './chunk-QVNRCDTV.js';
 import path from 'path';
 import * as p from '@clack/prompts';
 import { Command } from 'commander';
@@ -58,6 +58,9 @@ function reportAgentInstances(instances, removedFiles, onLine = logInfo, onRemov
   }
   for (const file of removedFiles ?? []) onRemoved(`Removed: ${file}`);
 }
+function reportRelocked(relocked, onLine = logInfo) {
+  for (const ref of relocked ?? []) onLine(`Re-locked ${ref}`);
+}
 function makeInstallCommand() {
   return new Command("install").description(`Install dependencies from skaile.yaml, or a single asset by ref (${REF_HINT})`).argument("[ref]", `Asset ref to install from the Catalog (${REF_HINT})`).option("--locked", "Install from lock file (CI mode \u2014 fails on drift)").option("--project-dir <path>", "Project directory", process.cwd()).option("--target <agent>", `Agent framework (${TARGET_DEFAULT_HINT})`).option(
     "--global",
@@ -98,7 +101,7 @@ async function runRefInstall(ref, opts) {
   const spinner = createSpinner();
   spinner.start(`Installing ${ref}`);
   try {
-    const { openCatalogSource, openLibrary } = await import('./open-library-P3D337NH.js');
+    const { openCatalogSource, openLibrary } = await import('./open-library-DB2PNL2X.js');
     const catalog = await openCatalogSource({ projectDir: path.resolve(opts.projectDir) });
     if (!supportsInstallManifest(catalog)) {
       throw new Error(
@@ -140,7 +143,7 @@ async function runYamlInstall(opts) {
     return;
   }
   try {
-    const { ensureSourcesCloned } = await import('./ensure-sources-277VI7R3.js');
+    const { ensureSourcesCloned } = await import('./ensure-sources-SRC2DVR5.js');
     const hydrate = ensureSourcesCloned(projectDir, { quiet: true });
     if (hydrate.cloned.length > 0) {
       logOk(`Cloned source(s): ${hydrate.cloned.join(", ")}`);
@@ -172,7 +175,8 @@ async function runYamlInstall(opts) {
     if (result.removed.length > 0) {
       for (const r of result.removed) logWarn(`Removed: ${r}`);
     }
-    if (result.deployed.length === 0 && result.removed.length === 0 && result.missing.length === 0) {
+    reportRelocked(result.relocked);
+    if (result.deployed.length === 0 && result.removed.length === 0 && result.missing.length === 0 && !result.relocked?.length) {
       logInfo("Nothing to install (already up to date).");
     }
     if (result.missing.length > 0) {
@@ -218,7 +222,8 @@ async function runGlobalInstall(opts, harnesses) {
     if (result.deployed.length > 0) for (const d of result.deployed) logOk(d);
     reportPresetExpansions(result.presets);
     if (result.removed.length > 0) for (const r of result.removed) logWarn(`Removed: ${r}`);
-    if (result.deployed.length === 0 && result.removed.length === 0 && result.missing.length === 0)
+    reportRelocked(result.relocked);
+    if (result.deployed.length === 0 && result.removed.length === 0 && result.missing.length === 0 && !result.relocked?.length)
       logInfo("Nothing to install (already up to date).");
     if (result.missing.length > 0) {
       for (const m of result.missing) logErr(`Missing: ${m}${result.missingHints?.[m] ?? ""}`);
@@ -243,29 +248,15 @@ function makeCheckCommand() {
       registry: getKindRegistry(),
       projectDir: path.resolve(opts.projectDir)
     });
-    const issues = await am.doctor();
-    let notInstalled = [];
-    try {
-      notInstalled = (await am.listDeclared()).filter((d) => d.state !== "installed");
-    } catch {
-    }
-    if (issues.length === 0 && notInstalled.length === 0) {
+    const gaps = await am.lockGaps();
+    const incomplete = await am.incompleteDeploys();
+    if (gaps.length === 0 && incomplete.length === 0) {
       logOk("All dependencies satisfied.");
     } else {
-      for (const i of issues) {
-        if (i.unresolved) {
-          logErr(
-            `${i.assetKind}:${i.assetName} is locked but no source or library provides it any more \u2014 its requirements cannot be checked`
-          );
-          continue;
-        }
-        logErr(
-          `${i.assetKind}:${i.assetName} requires ${i.depKind}:${i.depName} (${i.inRepos ? "fixable" : "not found"})`
-        );
-      }
-      for (const d of notInstalled) {
+      for (const g of gaps) logErr(g.message);
+      for (const d of incomplete) {
         logErr(
-          d.state === "invalid" ? `${d.ref} is not a valid asset ref (expected ${REF_HINT})` : d.state === "drift" ? `${d.ref} is declared and locked but not materialized \u2014 run \`skaile install\`` : `${d.ref} is declared but does not resolve \u2014 run \`skaile install\``
+          `${d.ref} is deployed without ${d.missing.join(", ")} \u2014 run \`skaile install\` to restore it`
         );
       }
       process.exit(1);
@@ -331,6 +322,6 @@ function makeCleanCommand() {
   });
 }
 
-export { REF_HINT, makeCheckCommand, makeCleanCommand, makeInstallCommand, reportAgentInstances, reportInstalledSoftDeps, reportPresetExpansions, runPointerOnlyInstall, supportsInstallManifest };
-//# sourceMappingURL=chunk-EU3Q5AQ4.js.map
-//# sourceMappingURL=chunk-EU3Q5AQ4.js.map
+export { REF_HINT, makeCheckCommand, makeCleanCommand, makeInstallCommand, reportAgentInstances, reportInstalledSoftDeps, reportPresetExpansions, reportRelocked, runPointerOnlyInstall, supportsInstallManifest };
+//# sourceMappingURL=chunk-GKMZ6THE.js.map
+//# sourceMappingURL=chunk-GKMZ6THE.js.map

package/dist/chunk-GKMZ6THE.js.map

@@ -0,0 +1 @@
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path from \"node:path\";\nimport * as p from \"@clack/prompts\";\nimport { AssetManager, type InstalledAgentInstance } from \"@skaile/workspaces/asset-manager\";\nimport {\n  type DriverTarget,\n  type PresetExpansion,\n  parseAssetRef,\n  readLock,\n  SUPPORTED_DRIVER_TARGETS,\n  userConfigPath,\n} from \"@skaile/workspaces/core\";\nimport type { InstallManifest } from \"@skaile/workspaces/types\";\nimport { Command } from \"commander\";\nimport {\n  colorRef,\n  deferredWarnings,\n  formatSoftDepHint,\n  logErr,\n  logInfo,\n  logOk,\n  logWarn,\n  S,\n  TARGET_DEFAULT_HINT,\n  warnLegacyClaudeCopies,\n} from \"../helpers.ts\";\nimport { createSpinner } from \"../spinner.ts\";\nimport { getKindRegistry } from \"../open-registry.ts\";\n\n/**\n * Canonical asset-ref shape accepted by `skaile install <ref>`:\n * `kind:@<publisher>/<name>#<version>` (the `#` version sigil). Validated via\n * `parseAssetRef` so the CLI shares the single canonical grammar; the legacy\n * trailing-`@version` shape is rejected.\n */\nexport const REF_HINT = \"kind:@<publisher>/<name>#<version> (e.g. skill:@skaile/use-exa#1.0.0)\";\n\n/** True when `ref` parses as a canonical asset ref. */\nfunction isValidAssetRef(ref: string): boolean {\n  try {\n    parseAssetRef(ref);\n    return true;\n  } catch {\n    return false;\n  }\n}\n\n/**\n * Minimal catalog-source surface the pointer-only install path needs.\n * `RemoteCatalogSource` satisfies this — narrowing keeps {@link runPointerOnlyInstall}\n * testable with a hand-rolled stub.\n */\nexport interface InstallManifestSource {\n  getInstallManifest(ref: string): Promise<InstallManifest>;\n}\n\n/**\n * Capability check: is this catalog source able to serve install manifests?\n *\n * `openCatalogSource` returns a `RemoteCatalogSource | RestCatalogSource`.\n * Only the tRPC-framed `RemoteCatalogSource` implements `getInstallManifest`;\n * the REST-framed `RestCatalogSource` (the default for any catalog URL other\n * than `https://skaile.store`) does not. Calling it unconditionally would be a\n * runtime `TypeError`, so the pointer-only install path must capability-detect\n * first and fail with a clear, actionable message.\n */\nexport function supportsInstallManifest(source: unknown): source is InstallManifestSource {\n  return (\n    typeof (source as { getInstallManifest?: unknown } | null | undefined)?.getInstallManifest ===\n    \"function\"\n  );\n}\n\n/**\n * Minimal library surface the pointer-only install path needs.\n * `LocalIndex` satisfies this.\n */\nexport interface InstallLibrary {\n  install(manifest: InstallManifest): Promise<{ installPath: string }>;\n}\n\n/**\n * Result of a pointer-only catalog install.\n */\nexport interface PointerOnlyInstallResult {\n  /** Absolute path the verified asset bytes were written to. */\n  installPath: string;\n  /** The pinned upstream commit SHA the asset was fetched at. */\n  commitSha: string;\n  /** Number of files in the install manifest. */\n  fileCount: number;\n}\n\n/**\n * Pointer-only catalog install — the `skaile install <ref>` code path.\n *\n * 1. Resolves the pointer-only {@link InstallManifest} from the Catalog.\n * 2. Hands it to the library, which fetches each file's bytes directly from\n *    the upstream repo at the pinned commit, verifies every per-file SHA256\n *    plus the composite SHA256, and only then writes the verified files.\n *\n * Both dependencies are injected so the function is unit-testable without a\n * network round-trip. In production the CLI passes a `RemoteCatalogSource`\n * and a `LocalIndex`.\n *\n * @param ref - Canonical asset ref (`kind:@<publisher>/<name>#<version>`).\n * @param deps - Injected catalog source + library.\n * @returns The install path, pinned commit SHA, and file count.\n * @throws When the ref is malformed, the manifest cannot be resolved, or any\n *   hash verification fails. The underlying error message is surfaced as-is.\n */\nexport async function runPointerOnlyInstall(\n  ref: string,\n  deps: { catalog: InstallManifestSource; library: InstallLibrary },\n): Promise<PointerOnlyInstallResult> {\n  let requested: ReturnType<typeof parseAssetRef>;\n  try {\n    requested = parseAssetRef(ref);\n  } catch (e) {\n    throw new Error(\n      `malformed asset ref '${ref}' — expected ${REF_HINT}: ${e instanceof Error ? e.message : String(e)}`,\n    );\n  }\n  const manifest = await deps.catalog.getInstallManifest(ref);\n  // [M1] Identity check: the catalog must not install a different asset than\n  // requested. Compare the PARSED refs (kind/publisher/name/pin) so equivalent\n  // spellings (optional `kind:`, default `skill`) are treated as the same ref.\n  const got = parseAssetRef(manifest.ref);\n  if (\n    got.kind !== requested.kind ||\n    got.publisher !== requested.publisher ||\n    got.name !== requested.name ||\n    got.pin !== requested.pin\n  ) {\n    throw new Error(\n      `catalog identity mismatch: requested '${ref}' but the catalog returned a manifest for '${manifest.ref}'`,\n    );\n  }\n  const { installPath } = await deps.library.install(manifest);\n  return {\n    installPath,\n    commitSha: manifest.source.commitSha,\n    fileCount: manifest.files.length,\n  };\n}\n\n/**\n * Print one summary line per `preset:` dependency `skaile install` expanded: how many\n * asset items joined the install set and how many instance items (`library://`,\n * placeholders) were skipped, which only `skaile preset apply` materialises.\n */\nexport function reportPresetExpansions(\n  presets: readonly PresetExpansion[] | undefined,\n  onLine: (line: string) => void = logInfo,\n): void {\n  for (const preset of presets ?? []) {\n    onLine(\n      `preset ${preset.ref}: ${preset.assets} assets, ${preset.skipped} instance items skipped (apply with skaile preset apply)`,\n    );\n  }\n}\n\n/**\n * Print one line per agent instance `skaile install` rendered (with the files\n * written) and one per native agent file removed because its instance left `skaile.yaml`.\n */\nexport function reportAgentInstances(\n  instances: readonly InstalledAgentInstance[] | undefined,\n  removedFiles: readonly string[] | undefined,\n  onLine: (line: string) => void = logInfo,\n  onRemoved: (line: string) => void = logWarn,\n): void {\n  for (const instance of instances ?? []) {\n    onLine(`agent ${instance.id}: ${instance.files.join(\", \")}`);\n  }\n  for (const file of removedFiles ?? []) onRemoved(`Removed: ${file}`);\n}\n\n/** One `Re-locked` line per lock entry `install`/`update` rewrote for an already-locked asset. */\nexport function reportRelocked(\n  relocked: string[] | undefined,\n  onLine: (line: string) => void = logInfo,\n): void {\n  for (const ref of relocked ?? []) onLine(`Re-locked ${ref}`);\n}\n\n/**\n * Creates the `skaile install` command.\n *\n * Two modes, selected by argument shape:\n *\n * - `skaile install` (no positional arg) — reads `skaile.yaml` and deploys all\n *   declared assets (and their transitive dependencies) to the configured\n *   driver target directory. Supports `--locked` for CI-mode install from a\n *   lock file.\n * - `skaile install kind:@<publisher>/<name>#<version>` — pointer-only catalog\n *   install: resolves the pointer-only install manifest from the configured\n *   Catalog, fetches each file's bytes directly from the upstream repo at the\n *   pinned commit, verifies every per-file + the composite SHA256, then writes\n *   the verified files into the local Library.\n *\n * @returns Configured {@link Command} ready for `program.addCommand()`.\n * @docLink cli/commands/project#make-install-command\n */\nexport function makeInstallCommand(): Command {\n  return new Command(\"install\")\n    .description(`Install dependencies from skaile.yaml, or a single asset by ref (${REF_HINT})`)\n    .argument(\"[ref]\", `Asset ref to install from the Catalog (${REF_HINT})`)\n    .option(\"--locked\", \"Install from lock file (CI mode — fails on drift)\")\n    .option(\"--project-dir <path>\", \"Project directory\", process.cwd())\n    .option(\"--target <agent>\", `Agent framework (${TARGET_DEFAULT_HINT})`)\n    .option(\n      \"--global\",\n      \"Install the global SSOT (~/.skaile/skaile.yaml), fanning out to every global harness\",\n    )\n    .option(\n      \"--harness <ids>\",\n      \"Comma-separated global harnesses to install into (default: all resolved); implies --global\",\n    )\n    .option(\n      \"--link\",\n      \"symlink local-path assets instead of copying (dev loop; machine-local, not for committing)\",\n    )\n    .action(runInstallCommand);\n}\n\n/** Options shape accepted by the `skaile install` command action. */\ninterface InstallCommandOptions {\n  locked?: boolean;\n  projectDir: string;\n  target?: string;\n  global?: boolean;\n  harness?: string;\n  link?: boolean;\n}\n\n/**\n * Parse a `--harness a,b` value into validated {@link DriverTarget}s, exiting on\n * an unknown id. Returns `undefined` when the flag is absent (resolve the full\n * global set instead).\n */\nfunction parseHarnessFilter(raw: string | undefined): DriverTarget[] | undefined {\n  if (!raw) return undefined;\n  const ids = raw\n    .split(\",\")\n    .map((s) => s.trim())\n    .filter(Boolean);\n  const out: DriverTarget[] = [];\n  for (const id of ids) {\n    if (!(SUPPORTED_DRIVER_TARGETS as string[]).includes(id)) {\n      logErr(`unknown harness '${id}' — expected one of: ${SUPPORTED_DRIVER_TARGETS.join(\", \")}`);\n      process.exit(1);\n    }\n    out.push(id as DriverTarget);\n  }\n  return out.length > 0 ? out : undefined;\n}\n\n/**\n * `skaile install` action body. Dispatches by argument shape:\n * a positional `ref` selects pointer-only catalog install, otherwise the\n * legacy `skaile.yaml` install path runs.\n */\nasync function runInstallCommand(\n  ref: string | undefined,\n  opts: InstallCommandOptions,\n): Promise<void> {\n  // ── Pointer-only catalog install: `skaile install <ref>` ──────────────\n  if (ref !== undefined) {\n    await runRefInstall(ref, opts);\n    return;\n  }\n\n  // ── Legacy install: `skaile install` reads skaile.yaml ────────────────\n  await runYamlInstall(opts);\n}\n\n/** Pointer-only catalog install path for `skaile install <ref>`. */\nasync function runRefInstall(ref: string, opts: InstallCommandOptions): Promise<void> {\n  if (!isValidAssetRef(ref)) {\n    logErr(`malformed asset ref '${ref}' — expected ${REF_HINT}`);\n    process.exit(1);\n  }\n  const spinner = createSpinner();\n  spinner.start(`Installing ${ref}`);\n  try {\n    const { openCatalogSource, openLibrary } = await import(\"../open-library.ts\");\n    const catalog = await openCatalogSource({ projectDir: path.resolve(opts.projectDir) });\n    // [H2] REST-framed catalogs (the default for any catalog URL other\n    // than https://skaile.store) cannot serve install manifests. Detect\n    // and fail clearly rather than throwing a runtime TypeError.\n    if (!supportsInstallManifest(catalog)) {\n      throw new Error(\n        \"pointer-only install (skaile install <ref>) requires a tRPC-framed Catalog. \" +\n          \"The configured catalog uses REST framing, which does not serve install \" +\n          \"manifests. Set catalog.url to https://skaile.store, or catalog.framing: trpc, \" +\n          `in ${userConfigPath()}.`,\n      );\n    }\n    const library = await openLibrary();\n    try {\n      const result = await runPointerOnlyInstall(ref, { catalog, library });\n      spinner.stop(\"Done\");\n      logOk(`Installed ${colorRef(ref)}`);\n      logInfo(`Path: ${S.dim(result.installPath)}`);\n      logInfo(`Commit: ${S.dim(result.commitSha)}`);\n      logInfo(`Files: ${S.dim(String(result.fileCount))}`);\n      logInfo(\n        S.dim(\n          `Installed globally (see Path above) — use \\`skaile add ${ref}\\` to deploy into this project.`,\n        ),\n      );\n    } finally {\n      library.close();\n    }\n  } catch (err) {\n    spinner.stop(\"Failed\");\n    const msg = err instanceof Error ? err.message : String(err);\n    if (/unreachable/i.test(msg)) {\n      logErr(`asset uninstallable — source commit no longer available (${msg})`);\n    } else {\n      logErr(msg);\n    }\n    process.exit(1);\n  }\n}\n\n/** Legacy install path for bare `skaile install` (reads skaile.yaml). */\nasync function runYamlInstall(opts: InstallCommandOptions): Promise<void> {\n  const projectDir = path.resolve(opts.projectDir);\n\n  const harnesses = parseHarnessFilter(opts.harness);\n  // `--harness` implies `--global`.\n  if (opts.global || harnesses) {\n    await runGlobalInstall(opts, harnesses);\n    return;\n  }\n\n  // Hydrate sources declared in skaile.yaml before resolving assets, so\n  // freshly checked-out projects pull their source clones automatically.\n  try {\n    const { ensureSourcesCloned } = await import(\"../ensure-sources.ts\");\n    const hydrate = ensureSourcesCloned(projectDir, { quiet: true });\n    if (hydrate.cloned.length > 0) {\n      logOk(`Cloned source(s): ${hydrate.cloned.join(\", \")}`);\n    }\n    if (hydrate.failed.length > 0) {\n      logErr(`Failed to clone source(s): ${hydrate.failed.join(\", \")}`);\n    }\n  } catch (err) {\n    logWarn(`source hydration skipped: ${err instanceof Error ? err.message : String(err)}`);\n  }\n\n  const warnings = deferredWarnings();\n  const am = new AssetManager({\n    registry: getKindRegistry(),\n    projectDir,\n    driverTarget: opts.target as DriverTarget,\n    onLibraryCollision: warnings.push,\n  });\n  const spinner = createSpinner();\n  spinner.start(opts.locked ? \"Installing from lock file\" : \"Installing dependencies\");\n  try {\n    const result = await am.install({ locked: opts.locked, link: opts.link });\n    spinner.stop(\"Done\");\n    warnings.flush();\n    if (result.deployed.length > 0) {\n      for (const d of result.deployed) logOk(d);\n    }\n    reportPresetExpansions(result.presets);\n    reportAgentInstances(result.agentInstances, result.agentFilesRemoved);\n    if (result.removed.length > 0) {\n      for (const r of result.removed) logWarn(`Removed: ${r}`);\n    }\n    reportRelocked(result.relocked);\n    if (\n      result.deployed.length === 0 &&\n      result.removed.length === 0 &&\n      result.missing.length === 0 &&\n      !result.relocked?.length\n    ) {\n      logInfo(\"Nothing to install (already up to date).\");\n    }\n    if (result.missing.length > 0) {\n      for (const m of result.missing) logErr(`Missing: ${m}${result.missingHints?.[m] ?? \"\"}`);\n      // Partial-miss must fail the process — CI can't otherwise distinguish a\n      // clean install from \"half the assets never resolved\".\n      process.exitCode = 1;\n    }\n    if (result.lockWritten) {\n      logInfo(`Lock file written: ${S.dim(\"skaile.lock.yaml\")}`);\n    }\n    warnLegacyClaudeCopies(am);\n    // Report-only: surface soft deps the declared assets reference but aren't\n    // present. Never a prompt — install is a batch/CI path. Skipped under\n    // --locked: that mode is \"restore exactly\", so an `add` nudge would jar.\n    if (!opts.locked) await reportInstalledSoftDeps(am);\n  } catch (err) {\n    spinner.stop(\"Failed\");\n    warnings.flush();\n    logErr(String(err));\n    process.exit(1);\n  }\n}\n\n/**\n * Report (never prompt) the body-link soft deps that the declared assets\n * reference but that aren't in the project — the `install` counterpart to the\n * `add`-time soft-dep surface. `install` is a batch/CI path (often non-TTY), so\n * it only ever prints a hint: pulling stays an explicit `skaile add`. Best-effort\n * — `reportSoftDeps` swallows any index failure and returns `[]`.\n */\nexport async function reportInstalledSoftDeps(\n  am: Pick<AssetManager, \"listDeclared\" | \"reportSoftDeps\">,\n  onHint: (line: string) => void = (l) => logInfo(S.dim(l)),\n): Promise<void> {\n  try {\n    const declared = (await am.listDeclared()).map((d) => d.ref);\n    if (declared.length === 0) return;\n    const edges = await am.reportSoftDeps(declared);\n    for (const edge of edges) onHint(formatSoftDepHint(edge));\n  } catch {\n    // Best-effort: a soft-dep report must never fail an install that succeeded.\n  }\n}\n\n/**\n * Global cross-harness install: deploy every dep declared in the global SSOT\n * (`~/.skaile/skaile.yaml`) into each resolved global harness's dir under `~`,\n * write the global lock (`~/.skaile/skaile.lock.yaml`), then print per-harness\n * state. `harnesses` is the `--harness` filter (omit for the full resolved set).\n */\nasync function runGlobalInstall(\n  opts: InstallCommandOptions,\n  harnesses: DriverTarget[] | undefined,\n): Promise<void> {\n  const warnings = deferredWarnings();\n  const am = new AssetManager({\n    registry: getKindRegistry(),\n    projectDir: path.resolve(opts.projectDir),\n    global: true,\n    harnesses,\n    onLibraryCollision: warnings.push,\n  });\n  const spinner = createSpinner();\n  spinner.start(\"Installing global dependencies\");\n  try {\n    const result = await am.install({ locked: opts.locked, link: opts.link });\n    spinner.stop(\"Done\");\n    warnings.flush();\n    if (result.deployed.length > 0) for (const d of result.deployed) logOk(d);\n    reportPresetExpansions(result.presets);\n    if (result.removed.length > 0) for (const r of result.removed) logWarn(`Removed: ${r}`);\n    reportRelocked(result.relocked);\n    if (\n      result.deployed.length === 0 &&\n      result.removed.length === 0 &&\n      result.missing.length === 0 &&\n      !result.relocked?.length\n    )\n      logInfo(\"Nothing to install (already up to date).\");\n    if (result.missing.length > 0) {\n      for (const m of result.missing) logErr(`Missing: ${m}${result.missingHints?.[m] ?? \"\"}`);\n      process.exitCode = 1;\n    }\n    if (result.lockWritten) logInfo(`Global lock written: ${S.dim(\"~/.skaile/skaile.lock.yaml\")}`);\n\n    // Per-harness reconciliation summary so a partial fan-out is visible.\n    const state = am.globalState({});\n    const byHarness = new Map<string, number>();\n    for (const s of state)\n      if (s.state === \"installed\") byHarness.set(s.harness, (byHarness.get(s.harness) ?? 0) + 1);\n    for (const [harness, n] of byHarness) logInfo(`${harness}: ${n} installed`);\n  } catch (err) {\n    spinner.stop(\"Failed\");\n    warnings.flush();\n    logErr(String(err));\n    process.exit(1);\n  }\n}\n\n/**\n * Creates the `skaile check` command.\n *\n * Scans all deployed assets for unmet dependency requirements **and** the\n * declared set for deps that never materialized, and exits with code 1 if\n * either is found. `doctor()` alone only walks *deployed* assets' `requires`, so\n * a declared dep whose bytes never landed (e.g. a store-sourced `mcp-server`)\n * used to report \"satisfied\" (#462). A declared dep that is not in the lock at\n * all (its library or source is gone) fails the check too, like `skaile list`\n * showing it as `declared`.\n *\n * @returns Configured {@link Command} ready for `program.addCommand()`.\n * @docLink cli/commands/project#make-check-command\n */\nexport function makeCheckCommand(): Command {\n  return new Command(\"check\")\n    .description(\"Check for unmet requirements\")\n    .option(\"--project-dir <path>\", \"Project directory\", process.cwd())\n    .action(async (opts) => {\n      const am = new AssetManager({\n        registry: getKindRegistry(),\n        projectDir: path.resolve(opts.projectDir),\n      });\n      // `lockGaps` is the one set `install --locked` and `outdated` fail on too: unmet\n      // `requires` of deployed assets plus declared deps the lock misses or contradicts.\n      const gaps = await am.lockGaps();\n      const incomplete = await am.incompleteDeploys();\n      if (gaps.length === 0 && incomplete.length === 0) {\n        logOk(\"All dependencies satisfied.\");\n      } else {\n        for (const g of gaps) logErr(g.message);\n        for (const d of incomplete) {\n          logErr(\n            `${d.ref} is deployed without ${d.missing.join(\", \")} — run \\`skaile install\\` to restore it`,\n          );\n        }\n        process.exit(1);\n      }\n    });\n}\n\n/**\n * Creates the `skaile clean` command.\n *\n * Removes all skaile-managed assets tracked in `skaile.lock.yaml` from the\n * workspace. With `--all` also removes history, patches, repos, and the lock\n * file itself. Preserves unmanaged (manually placed) assets.\n *\n * @returns Configured {@link Command} ready for `program.addCommand()`.\n * @docLink cli/commands/project#make-clean-command\n */\nexport function makeCleanCommand(): Command {\n  return new Command(\"clean\")\n    .description(\"Remove all skaile-managed assets from the workspace\")\n    .option(\"--all\", \"Full reset: also remove history, patches, repos, and lock file\")\n    .option(\"--dry-run\", \"Show what would be removed without doing it\")\n    .option(\"-y, --yes\", \"Skip confirmation prompt\")\n    .option(\"--project-dir <path>\", \"Project directory\", process.cwd())\n    .option(\"--target <agent>\", `Agent framework (${TARGET_DEFAULT_HINT})`)\n    .action(async (opts) => {\n      const am = new AssetManager({\n        registry: getKindRegistry(),\n        projectDir: path.resolve(opts.projectDir),\n        driverTarget: opts.target as DriverTarget,\n      });\n\n      // Preview: load lock file to show what will be cleaned\n      const lock = readLock(path.resolve(opts.projectDir, \"skaile.lock.yaml\"));\n\n      if (!lock || Object.keys(lock.assets).length === 0) {\n        logInfo(\"Nothing to clean (no skaile-managed assets found).\");\n        return;\n      }\n\n      const assetRefs = Object.keys(lock.assets);\n      console.log();\n      console.log(`  ${S.heading(\"Assets to remove:\")} ${S.dim(`(${assetRefs.length})`)}`);\n      for (const ref of assetRefs) {\n        console.log(`    ${colorRef(ref)}`);\n      }\n\n      if (opts.all) {\n        console.log();\n        console.log(`  ${S.heading(\"Also removing:\")}`);\n        console.log(`    ${S.dim(\".skaile/history.yaml\")}`);\n        console.log(`    ${S.dim(\".skaile/patches/\")}`);\n        console.log(`    ${S.dim(\"skaile.lock.yaml\")}`);\n      }\n\n      if (opts.dryRun) {\n        console.log();\n        logInfo(\"Dry run — no changes made.\");\n        return;\n      }\n\n      if (!opts.yes) {\n        const confirm = await p.confirm({ message: \"Proceed?\" });\n        if (p.isCancel(confirm) || !confirm) {\n          logInfo(\"Cancelled.\");\n          return;\n        }\n      }\n\n      const result = am.clean({ all: opts.all });\n\n      console.log();\n      for (const r of result.removed) {\n        logOk(`Removed ${r}`);\n      }\n      for (const s of result.skipped) {\n        logWarn(`Skipped ${s.ref}: ${s.reason}`);\n      }\n      if (result.unmanaged.length > 0) {\n        console.log();\n        logInfo(`Kept ${result.unmanaged.length} unmanaged asset(s):`);\n        for (const u of result.unmanaged) {\n          console.log(`    ${S.dim(u)}`);\n        }\n      }\n      if (opts.all) {\n        console.log();\n        logOk(\"Full reset complete.\");\n      }\n    });\n}\n"]}

package/dist/{chunk-TTPSDC2G.js → chunk-GTILM2CI.js}

@@ -1,4 +1,4 @@
-import { parseDep, isValidAssetName, slugifyAssetName } from './chunk-O7VPNKYN.js';
+import { parseDep, isValidAssetName, slugifyAssetName } from './chunk-QVNRCDTV.js';
 import { createLogger } from './chunk-BOFL7GIF.js';
 import { stat, readFile, opendir } from 'fs/promises';
 import { basename, dirname, join } from 'path';
@@ -239,6 +239,7 @@ function fromPresetYamlContent(content, repoName, filePath) {
     meta = parse(content) ?? {};
   } catch {
   }
+  const { refs, skipped } = presetItemRefs(meta.items);
   return {
     name: String(meta.name ?? basename(filePath).replace(/\.preset\.yaml$/, "")),
     kind: "preset",
@@ -247,7 +248,8 @@ function fromPresetYamlContent(content, repoName, filePath) {
     publisher: repoName,
     version: String(meta.version ?? ""),
     requires: [],
-    dependencies: presetItemRefs(meta.items).refs
+    dependencies: refs,
+    ...skipped > 0 ? { skippedItems: skipped } : {}
   };
 }
 async function assetDepRefs(filePath) {
@@ -518,7 +520,7 @@ function entryFromManifest(name, content, filePath, repoName, knownKinds) {
 function isManifestName(name) {
   return name === "SKILL.md" || name === "AGENT.md" || name === "agent.yaml" || name === "CONTRACT.md" || name === "MCP.md" || name === "CONNECTOR.md" || name === "knowledge.yaml" || name.endsWith(".prompt.md") || name.endsWith(".preset.yaml") || name.endsWith(".flow.yaml") || name.endsWith(".flow.json");
 }
-async function readAssetPublisherOverrides(root, opTimeoutMs) {
+async function readManifestAssetOverrides(root, opTimeoutMs) {
   const out = {};
   const file = join(root, "skaile.manifest.yaml");
   const content = await tryWithFsDeadline(
@@ -537,16 +539,30 @@ async function readAssetPublisherOverrides(root, opTimeoutMs) {
   const assets = doc?.assets;
   if (!Array.isArray(assets)) return out;
   for (const a of assets) {
-    const { kind, name, publisher } = a ?? {};
+    const { kind, name, publisher, dependencies } = a ?? {};
     if (typeof kind !== "string" || typeof name !== "string") continue;
-    if (typeof publisher !== "string") continue;
-    const bare = publisher.trim().replace(/^@/, "");
-    if (bare) out[`${kind}:${name}`] = bare;
+    const override = {
+      dependencies: Array.isArray(dependencies) ? dependencies.filter((d) => typeof d === "string" && d.trim().length > 0) : []
+    };
+    const bare = typeof publisher === "string" ? publisher.trim().replace(/^@/, "") : "";
+    if (bare) override.publisher = bare;
+    if (override.publisher || override.dependencies.length > 0) out[`${kind}:${name}`] = override;
   }
   return out;
 }
+function mergeManifestDependencies(entry, dependencies) {
+  const idOf = (d) => `${d.kind}:@${d.publisher ?? ""}/${d.name}`;
+  const seen = new Set(entry.requires.map(idOf));
+  for (const raw of dependencies) {
+    const dep = parseDep(raw);
+    if (seen.has(idOf(dep))) continue;
+    seen.add(idOf(dep));
+    entry.requires.push(dep);
+  }
+}
 async function scanDirectory(root, repoName, options) {
   const entries = /* @__PURE__ */ new Map();
+  const copies = [];
   const onTruncate = options.onTruncate ?? warnTruncation;
   const reported = /* @__PURE__ */ new Set();
   const relay = (info) => {
@@ -554,12 +570,17 @@ async function scanDirectory(root, repoName, options) {
     onTruncate(info);
   };
   const opTimeoutMs = options.opTimeoutMs ?? fsDeadlineMs();
-  const publisherOverrides = await readAssetPublisherOverrides(root, opTimeoutMs);
+  const manifestOverrides = await readManifestAssetOverrides(root, opTimeoutMs);
   function add(e) {
     normalizeEntryName(e);
     const key = `${e.kind}:${e.name}`;
-    const override = publisherOverrides[key];
-    if (override) e.publisher = override;
+    const override = manifestOverrides[key];
+    if (override?.publisher) e.publisher = override.publisher;
+    if (override) mergeManifestDependencies(e, override.dependencies);
+    if (options.keepDuplicates) {
+      copies.push(e);
+      return;
+    }
     const existing = entries.get(key);
     if (!existing) {
       entries.set(key, e);
@@ -592,9 +613,9 @@ async function scanDirectory(root, repoName, options) {
       }
     }
   }
-  return [...entries.values()];
+  return options.keepDuplicates ? copies : [...entries.values()];
 }
 
 export { DEFAULT_FS_DEADLINE_MS, DEFAULT_WALK_BUDGET_MS, DEFAULT_WALK_MAX_DEPTH, DEFAULT_WALK_MAX_ENTRIES, FS_DEADLINE_ENV_VAR, FsDeadlineError, ManifestKindError, WALK_BUDGET_MS_ENV_VAR, WALK_MAX_DEPTH_ENV_VAR, WALK_MAX_ENTRIES_ENV_VAR, assetDepRefs, fromAgentMd, fromAgentYaml, fromConnectorMd, fromContractMd, fromFlowYaml, fromKnowledgeYaml, fromMcpServerMd, fromMcpServerMdContent, fromPresetYaml, fromPromptMd, fromSkillMd, fsDeadlineMs, manifestKindDiagnostic, parseFrontmatter, parseRequires, presetItemRefs, scanDirectory, tryWithFsDeadline, walkDir, withFsDeadline };
-//# sourceMappingURL=chunk-TTPSDC2G.js.map
-//# sourceMappingURL=chunk-TTPSDC2G.js.map
+//# sourceMappingURL=chunk-GTILM2CI.js.map
+//# sourceMappingURL=chunk-GTILM2CI.js.map