@skaile/workspaces 5.14.0 → 5.15.0

package/dist/{chunk-S6FZUR5H.js → chunk-SAKVAG23.js}

@@ -1,8 +1,8 @@
-import { SubprocessCliDriver, extractText, extractCost, extractTokens } from './chunk-WTEYDNTR.js';
-import { resolveEnvDriverSession, bindSingleProviderEntry, resolveRegistryBinding } from './chunk-IQVZIVSA.js';
-import { getStaticModels, fetchProviderModels } from './chunk-YFIHFJEB.js';
-import { getBridgeLogger, registryDriverConfig } from './chunk-DWRYUWOK.js';
-import { getProviderPreset, BUILTIN_DRIVER_CATALOG, entryCredentialValue } from './chunk-6VIVUBNN.js';
+import { SubprocessCliDriver, extractText, extractCost, extractTokens } from './chunk-DPCEQOIZ.js';
+import { resolveEnvDriverSession, bindSingleProviderEntry, resolveRegistryBinding } from './chunk-O673TBWJ.js';
+import { getStaticModels, fetchProviderModels } from './chunk-GLMKS6V6.js';
+import { getBridgeLogger, registryDriverConfig } from './chunk-4AKR4XPQ.js';
+import { getProviderPreset, BUILTIN_DRIVER_CATALOG, entryCredentialValue } from './chunk-GQ5OYFVD.js';
 import * as z from 'zod';
 
 var GOOGLE_DEFAULT_BASE_URL = getProviderPreset("google")?.base_url;
@@ -184,5 +184,5 @@ var geminiDriverTarget = {
 };
 
 export { GeminiDriver, GeminiFamilyDriver, geminiDriverTarget };
-//# sourceMappingURL=chunk-S6FZUR5H.js.map
-//# sourceMappingURL=chunk-S6FZUR5H.js.map
+//# sourceMappingURL=chunk-SAKVAG23.js.map
+//# sourceMappingURL=chunk-SAKVAG23.js.map

package/dist/{chunk-S6FZUR5H.js.map → chunk-SAKVAG23.js.map}

@@ -1 +1 @@
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type { DriverTarget } from \"@skaile/workspaces/plugin-registry\";\nimport type { Logger } from \"@skaile/workspaces/types\";\nimport * as z from \"zod\";\nimport { getBridgeLogger } from \"../logger.js\";\nimport { fetchProviderModels, getStaticModels, type ModelEntry } from \"../models.js\";\nimport { getProviderPreset } from \"../provider-catalog.js\";\nimport { entryCredentialValue } from \"../provider-materialize/credential-env.js\";\nimport {\n  bindSingleProviderEntry,\n  type EnvDriverSession,\n  type RegistryModelBinding,\n  resolveEnvDriverSession,\n  resolveRegistryBinding,\n} from \"../provider-materialize/env-drivers.js\";\nimport { registryDriverConfig } from \"../provider-registry-derive.js\";\nimport { BUILTIN_DRIVER_CATALOG } from \"../registry.js\";\nimport type { AgentConfig, DriverInfo, ReconfigureApplied } from \"../types.js\";\nimport { extractCost, extractText, extractTokens, SubprocessCliDriver } from \"./_subprocess-cli.js\";\n\n/**\n * The Gemini API host the CLI talks to unless told otherwise — the catalog's\n * `google` preset, so the two can never drift apart.\n */\nconst GOOGLE_DEFAULT_BASE_URL = getProviderPreset(\"google\")?.base_url;\n\n/**\n * Shared base for the Gemini-CLI event family. Gemini CLI and Qwen Code (a fork\n * of Gemini CLI) emit the same `stream-json` event shape, so both dispatch the\n * same {@link handleJson}: `init`/`system` → session capture, `message`/\n * `assistant` → streamed assistant text, `tool_use` / `tool_result` → tool\n * events, `result` → tokens + cost.\n *\n * @docLink packages/bridge/drivers#gemini-driver\n */\nexport abstract class GeminiFamilyDriver extends SubprocessCliDriver {\n  protected handleJson(json: any): void {\n    switch (json?.type) {\n      case \"init\":\n      case \"system\":\n        this.captureSession(json.sessionId ?? json.session_id ?? json.id);\n        break;\n\n      case \"message\":\n      case \"assistant\": {\n        const role = json.role ?? json.message?.role ?? \"assistant\";\n        if (role !== \"assistant\") break;\n        const text = extractText(json);\n        if (json.done === true || json.final === true || json.finished === true) {\n          this.pushAssistantEnd(text);\n        } else {\n          this.pushAssistantDelta(text);\n        }\n        break;\n      }\n\n      case \"tool_use\":\n      case \"tool_call\":\n        this.pushToolCall(json.name ?? json.tool ?? \"tool\", json.input ?? json.args ?? {});\n        break;\n\n      case \"tool_result\":\n        this.pushToolResult(\n          json.name ?? json.tool ?? \"tool\",\n          json.result ?? json.output ?? json.content,\n          Boolean(json.is_error ?? json.isError ?? json.error),\n        );\n        break;\n\n      case \"error\":\n        this.pushError(this.classifyMessage(String(json.message ?? json.error ?? \"error\")));\n        break;\n\n      case \"result\":\n        this.captureSession(json.sessionId ?? json.session_id);\n        this.pushResult({\n          tokens: extractTokens(json),\n          costUsd: extractCost(json),\n          summary: extractText(json) || \"Task completed\",\n        });\n        break;\n    }\n  }\n\n  // ── Registry binding ──────────────────────────────────────────────────────\n\n  private providers?: EnvDriverSession;\n  private boundEntry?: RegistryModelBinding;\n  private bindingResolved = false;\n\n  /** This session's AI providers, resolved once from the config. */\n  protected providerSession(): EnvDriverSession {\n    this.providers ??= resolveEnvDriverSession(this.config);\n    return this.providers;\n  }\n\n  /**\n   * The AI provider entry this session's model selector names, memoized until\n   * the model changes.\n   *\n   * Gemini CLI and Qwen Code are `single`-plurality harnesses (§2.3): they\n   * address one endpoint, so the bound entry supplies both the credential and\n   * the base URL. Resolving through {@link bindSingleProviderEntry} is what\n   * puts the surface check — which throws — on the start path.\n   */\n  protected registryBinding(): RegistryModelBinding | undefined {\n    if (this.bindingResolved) return this.boundEntry;\n    const binding = bindSingleProviderEntry(\n      this.driverInfo.id,\n      this.productName,\n      this.providerSession(),\n    );\n    for (const warning of binding?.warnings ?? []) this.log.warn(warning);\n    this.boundEntry = binding;\n    this.bindingResolved = true;\n    return binding;\n  }\n\n  /**\n   * Fail before the first spawn when the bound entry speaks a surface this\n   * harness cannot — the error names the surface.\n   */\n  override async start(): Promise<void> {\n    this.registryBinding();\n    await super.start();\n  }\n\n  protected override onReconfigured(applied: ReconfigureApplied): void {\n    if (applied.model !== undefined) {\n      this.providers = undefined;\n      this.bindingResolved = false;\n    }\n  }\n\n  /** The provider-side model id the harness is actually run with. */\n  override getModel(): string | undefined {\n    return resolveRegistryBinding(this.providerSession())?.providerModelId ?? this.config.model;\n  }\n}\n\n/**\n * Agent driver for the Google **Gemini CLI** (`gemini`).\n *\n * Spawns `gemini -p \"<prompt>\" --output-format stream-json` per turn and maps\n * the stream-json events to the unified {@link AgentEvent} stream. Google\n * models only (`surface: google-generative-ai`): the AI provider entry the\n * session's model selector names supplies `GEMINI_API_KEY`, the `-m` model id\n * and — for a non-default endpoint — `GOOGLE_GEMINI_BASE_URL`.\n *\n * @remarks\n * - **Requires Gemini CLI ≥ v0.6.1** — earlier versions reject\n *   `--output-format`. A too-old CLI surfaces as a `process`-category exit error.\n * - **Session resume is not available in headless (`-p`) mode** — the CLI errors\n *   if asked to resume non-interactively, so this driver runs single-turn per\n *   process and logs a warning when a resume id is present.\n * - Exit codes: `42` → input/validation error, `53` → turn-limit (treated as a\n *   completed turn).\n *\n * @see https://github.com/google-gemini/gemini-cli\n * @docLink packages/bridge/drivers#gemini-driver\n */\nexport class GeminiDriver extends GeminiFamilyDriver {\n  readonly driverInfo: DriverInfo = {\n    id: \"gemini\",\n    name: \"Gemini CLI\",\n    modelAgnostic: false,\n    supportsInBandAbort: false,\n  };\n\n  protected readonly log: Logger = getBridgeLogger(\"gemini\");\n  protected readonly defaultBin = \"gemini\";\n  protected readonly productName = \"Gemini CLI\";\n  protected readonly envPrefix = \"GEMINI\";\n\n  protected buildArgs(message: string, resumeId: string | undefined): string[] {\n    if (resumeId) {\n      this.log.warn(\"Gemini CLI cannot resume in headless mode; starting a fresh turn\", {\n        resumeId,\n      });\n    }\n    const args = [\"-p\", message, \"--output-format\", \"stream-json\"];\n    const model = this.registryBinding()?.providerModelId ?? this.config.model;\n    if (model) args.push(\"-m\", model);\n    return args;\n  }\n\n  protected buildEnv(): Record<string, string> {\n    const env = this.baseEnv([\"GEMINI_API_KEY\", \"GOOGLE_API_KEY\", \"GOOGLE_GEMINI_BASE_URL\"]);\n    const binding = this.registryBinding();\n    if (!binding) return env;\n\n    // The entry is the authority: inherited Google carriers are dropped so an\n    // ambient key cannot authenticate a session pointed somewhere else.\n    delete env.GEMINI_API_KEY;\n    delete env.GOOGLE_API_KEY;\n    delete env.GOOGLE_GEMINI_BASE_URL;\n    const key = entryCredentialValue(binding.providerId, binding.entry, {\n      env: this.providerSession().lookupEnv,\n    });\n    if (key) env.GEMINI_API_KEY = key;\n    // Only a non-default endpoint is worth naming: Gemini CLI reads\n    // GOOGLE_GEMINI_BASE_URL as an override of its own default host.\n    if (binding.baseUrl && binding.baseUrl !== GOOGLE_DEFAULT_BASE_URL) {\n      env.GOOGLE_GEMINI_BASE_URL = binding.baseUrl;\n    }\n    return env;\n  }\n\n  protected installHint(): string {\n    return \"Gemini CLI is not installed or not on your PATH. Install it with `npm i -g @google/gemini-cli` (≥ v0.6.1).\";\n  }\n\n  protected override classifyExit(code: number | null, signal: NodeJS.Signals | null) {\n    if (code === 42) {\n      return {\n        message: \"Gemini CLI reported an input error (exit 42)\",\n        category: \"validation\" as const,\n        retryable: false,\n        hint: \"The prompt or flags were rejected by Gemini CLI. Check the model name and arguments.\",\n      };\n    }\n    if (code === 53) return null; // turn-limit — the result was already emitted.\n    return super.classifyExit(code, signal);\n  }\n\n  /**\n   * Discovery runs against the bound entry: its credential and, for a\n   * non-default endpoint, its base URL. Without an entry the ambient\n   * `GEMINI_API_KEY` is the last resort, and an unreachable API falls back to\n   * the static Google catalog.\n   */\n  override async listModels(): Promise<ModelEntry[]> {\n    const session = this.providerSession();\n    const binding = resolveRegistryBinding(session);\n    const key = binding\n      ? entryCredentialValue(binding.providerId, binding.entry, { env: session.lookupEnv })\n      : session.lookupEnv.GEMINI_API_KEY;\n    if (!key) return getStaticModels(\"google\");\n    const result = await fetchProviderModels(\n      \"google\",\n      key,\n      binding?.baseUrl && binding.baseUrl !== GOOGLE_DEFAULT_BASE_URL\n        ? { baseUrl: binding.baseUrl }\n        : {},\n    );\n    return result.ok && result.models.length > 0 ? result.models : getStaticModels(\"google\");\n  }\n}\n\n/**\n * `DriverTarget` wrapper for the gemini driver. Registered into the plugin\n * registry by `registerBuiltinDrivers()`.\n */\nexport const geminiDriverTarget: DriverTarget<AgentConfig> = {\n  id: \"gemini\",\n  displayName: BUILTIN_DRIVER_CATALOG.gemini?.name ?? \"Gemini CLI\",\n  apiVersion: 1,\n  configSchema: z.custom<AgentConfig>(() => true),\n  create: async (config, _ctx) => new GeminiDriver(config),\n  listModels: async (registry, options) =>\n    new GeminiDriver({\n      cwd: process.cwd(),\n      sessionId: \"model-list\",\n      ...registryDriverConfig(registry, options),\n    }).listModels(),\n};\n"]}
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type { DriverTarget } from \"@skaile/workspaces/plugin-registry\";\nimport type { Logger } from \"@skaile/workspaces/types\";\nimport * as z from \"zod\";\nimport { getBridgeLogger } from \"../logger.js\";\nimport { fetchProviderModels, getStaticModels, type ModelEntry } from \"../models.js\";\nimport { getProviderPreset } from \"../provider-catalog.js\";\nimport { entryCredentialValue } from \"../provider-materialize/credential-env.js\";\nimport {\n  bindSingleProviderEntry,\n  type EnvDriverSession,\n  type RegistryModelBinding,\n  resolveEnvDriverSession,\n  resolveRegistryBinding,\n} from \"../provider-materialize/env-drivers.js\";\nimport { registryDriverConfig } from \"../provider-registry-derive.js\";\nimport { BUILTIN_DRIVER_CATALOG } from \"../registry.js\";\nimport type { AgentConfig, DriverInfo, ReconfigureApplied } from \"../types.js\";\nimport { extractCost, extractText, extractTokens, SubprocessCliDriver } from \"./_subprocess-cli.js\";\n\n/**\n * The Gemini API host the CLI talks to unless told otherwise — the catalog's\n * `google` preset, so the two can never drift apart.\n */\nconst GOOGLE_DEFAULT_BASE_URL = getProviderPreset(\"google\")?.base_url;\n\n/**\n * Shared base for the Gemini-CLI event family. Gemini CLI and Qwen Code (a fork\n * of Gemini CLI) emit the same `stream-json` event shape, so both dispatch the\n * same {@link handleJson}: `init`/`system` → session capture, `message`/\n * `assistant` → streamed assistant text, `tool_use` / `tool_result` → tool\n * events, `result` → tokens + cost.\n *\n * @docLink packages/bridge/drivers#gemini-driver\n */\nexport abstract class GeminiFamilyDriver extends SubprocessCliDriver {\n  protected handleJson(json: any): void {\n    switch (json?.type) {\n      case \"init\":\n      case \"system\":\n        this.captureSession(json.sessionId ?? json.session_id ?? json.id);\n        break;\n\n      case \"message\":\n      case \"assistant\": {\n        const role = json.role ?? json.message?.role ?? \"assistant\";\n        if (role !== \"assistant\") break;\n        const text = extractText(json);\n        if (json.done === true || json.final === true || json.finished === true) {\n          this.pushAssistantEnd(text);\n        } else {\n          this.pushAssistantDelta(text);\n        }\n        break;\n      }\n\n      case \"tool_use\":\n      case \"tool_call\":\n        this.pushToolCall(json.name ?? json.tool ?? \"tool\", json.input ?? json.args ?? {});\n        break;\n\n      case \"tool_result\":\n        this.pushToolResult(\n          json.name ?? json.tool ?? \"tool\",\n          json.result ?? json.output ?? json.content,\n          Boolean(json.is_error ?? json.isError ?? json.error),\n        );\n        break;\n\n      case \"error\":\n        this.pushError(this.classifyMessage(String(json.message ?? json.error ?? \"error\")));\n        break;\n\n      case \"result\":\n        this.captureSession(json.sessionId ?? json.session_id);\n        this.pushResult({\n          tokens: extractTokens(json),\n          costUsd: extractCost(json),\n          summary: extractText(json) || \"Task completed\",\n        });\n        break;\n    }\n  }\n\n  // ── Registry binding ──────────────────────────────────────────────────────\n\n  private providers?: EnvDriverSession;\n  private boundEntry?: RegistryModelBinding;\n  private bindingResolved = false;\n\n  /** This session's AI providers, resolved once from the config. */\n  protected providerSession(): EnvDriverSession {\n    this.providers ??= resolveEnvDriverSession(this.config);\n    return this.providers;\n  }\n\n  /**\n   * The AI provider entry this session's model selector names, memoized until\n   * the model changes.\n   *\n   * Gemini CLI and Qwen Code are `single`-plurality harnesses (§2.3): they\n   * address one endpoint, so the bound entry supplies both the credential and\n   * the base URL. Resolving through {@link bindSingleProviderEntry} is what\n   * puts the surface check — which throws — on the start path.\n   */\n  protected registryBinding(): RegistryModelBinding | undefined {\n    if (this.bindingResolved) return this.boundEntry;\n    const binding = bindSingleProviderEntry(\n      this.driverInfo.id,\n      this.productName,\n      this.providerSession(),\n    );\n    for (const warning of binding?.warnings ?? []) this.log.warn(warning);\n    this.boundEntry = binding;\n    this.bindingResolved = true;\n    return binding;\n  }\n\n  /**\n   * Fail before the first spawn when the bound entry speaks a surface this\n   * harness cannot — the error names the surface.\n   */\n  override async start(): Promise<void> {\n    this.registryBinding();\n    await super.start();\n  }\n\n  protected override onReconfigured(applied: ReconfigureApplied): void {\n    if (applied.model !== undefined) {\n      this.providers = undefined;\n      this.bindingResolved = false;\n    }\n  }\n\n  /** The provider-side model id the harness is actually run with. */\n  override getModel(): string | undefined {\n    return resolveRegistryBinding(this.providerSession())?.providerModelId ?? this.config.model;\n  }\n}\n\n/**\n * Agent driver for the Google **Gemini CLI** (`gemini`).\n *\n * Spawns `gemini -p \"<prompt>\" --output-format stream-json` per turn and maps\n * the stream-json events to the unified {@link AgentEvent} stream. Google\n * models only (`surface: google-generative-ai`): the AI provider entry the\n * session's model selector names supplies `GEMINI_API_KEY`, the `-m` model id\n * and — for a non-default endpoint — `GOOGLE_GEMINI_BASE_URL`.\n *\n * @remarks\n * - **Requires Gemini CLI ≥ v0.6.1** — earlier versions reject\n *   `--output-format`. A too-old CLI surfaces as a `process`-category exit error.\n * - **Session resume is not available in headless (`-p`) mode** — the CLI errors\n *   if asked to resume non-interactively, so this driver runs single-turn per\n *   process and logs a warning when a resume id is present.\n * - Exit codes: `42` → input/validation error, `53` → turn-limit (treated as a\n *   completed turn).\n *\n * @see https://github.com/google-gemini/gemini-cli\n * @docLink packages/bridge/drivers#gemini-driver\n */\nexport class GeminiDriver extends GeminiFamilyDriver {\n  readonly driverInfo: DriverInfo = {\n    id: \"gemini\",\n    name: \"Gemini CLI\",\n    modelAgnostic: false,\n    supportsInBandAbort: false,\n  };\n\n  protected readonly log: Logger = getBridgeLogger(\"gemini\");\n  protected readonly defaultBin = \"gemini\";\n  protected readonly productName = \"Gemini CLI\";\n  protected readonly envPrefix = \"GEMINI\";\n\n  protected buildArgs(message: string, resumeId: string | undefined): string[] {\n    if (resumeId) {\n      this.log.warn(\"Gemini CLI cannot resume in headless mode; starting a fresh turn\", {\n        resumeId,\n      });\n    }\n    const args = [\"-p\", message, \"--output-format\", \"stream-json\"];\n    const model = this.registryBinding()?.providerModelId ?? this.config.model;\n    if (model) args.push(\"-m\", model);\n    return args;\n  }\n\n  protected buildEnv(): Record<string, string> {\n    const env = this.baseEnv([\"GEMINI_API_KEY\", \"GOOGLE_API_KEY\", \"GOOGLE_GEMINI_BASE_URL\"]);\n    const binding = this.registryBinding();\n    if (!binding) return env;\n\n    // The entry is the authority: inherited Google carriers are dropped so an\n    // ambient key cannot authenticate a session pointed somewhere else.\n    delete env.GEMINI_API_KEY;\n    delete env.GOOGLE_API_KEY;\n    delete env.GOOGLE_GEMINI_BASE_URL;\n    const key = entryCredentialValue(binding.providerId, binding.entry, {\n      env: this.providerSession().lookupEnv,\n    });\n    if (key) env.GEMINI_API_KEY = key;\n    // Only a non-default endpoint is worth naming: Gemini CLI reads\n    // GOOGLE_GEMINI_BASE_URL as an override of its own default host.\n    if (binding.baseUrl && binding.baseUrl !== GOOGLE_DEFAULT_BASE_URL) {\n      env.GOOGLE_GEMINI_BASE_URL = binding.baseUrl;\n    }\n    return env;\n  }\n\n  protected installHint(): string {\n    return \"Gemini CLI is not installed or not on your PATH. Install it with `npm i -g @google/gemini-cli` (≥ v0.6.1).\";\n  }\n\n  protected override classifyExit(code: number | null, signal: NodeJS.Signals | null) {\n    if (code === 42) {\n      return {\n        message: \"Gemini CLI reported an input error (exit 42)\",\n        category: \"validation\" as const,\n        retryable: false,\n        hint: \"The prompt or flags were rejected by Gemini CLI. Check the model name and arguments.\",\n      };\n    }\n    if (code === 53) return null; // turn-limit — the result was already emitted.\n    return super.classifyExit(code, signal);\n  }\n\n  /**\n   * Discovery runs against the bound entry: its credential and, for a\n   * non-default endpoint, its base URL. Without an entry the ambient\n   * `GEMINI_API_KEY` is the last resort, and an unreachable API falls back to\n   * the static Google catalog.\n   */\n  override async listModels(): Promise<ModelEntry[]> {\n    const session = this.providerSession();\n    const binding = resolveRegistryBinding(session);\n    const key = binding\n      ? entryCredentialValue(binding.providerId, binding.entry, { env: session.lookupEnv })\n      : session.lookupEnv.GEMINI_API_KEY;\n    if (!key) return getStaticModels(\"google\");\n    const result = await fetchProviderModels(\n      \"google\",\n      key,\n      binding?.baseUrl && binding.baseUrl !== GOOGLE_DEFAULT_BASE_URL\n        ? { baseUrl: binding.baseUrl }\n        : {},\n    );\n    return result.ok && result.models.length > 0 ? result.models : getStaticModels(\"google\");\n  }\n}\n\n/**\n * `DriverTarget` wrapper for the gemini driver. Registered into the plugin\n * registry by `registerBuiltinDrivers()`.\n */\nexport const geminiDriverTarget: DriverTarget<AgentConfig> = {\n  id: \"gemini\",\n  displayName: BUILTIN_DRIVER_CATALOG.gemini?.name ?? \"Gemini CLI\",\n  apiVersion: 1,\n  configSchema: z.custom<AgentConfig>(() => true),\n  create: async (config, _ctx) => new GeminiDriver(config),\n  listModels: async (registry, options) =>\n    new GeminiDriver({\n      cwd: process.cwd(),\n      sessionId: \"model-list\",\n      ...registryDriverConfig(registry, options),\n    }).listModels(),\n};\n"]}

package/dist/{chunk-7LGNJJ76.js → chunk-SCUEPCSJ.js}

@@ -1,13 +1,13 @@
 import { initTelemetry } from './chunk-4R6DROGN.js';
-import { parseSkillFrontmatter, validateFlowVersions } from './chunk-USHB5KEY.js';
-import { FlowAdapter, SessionNodeExecutor, SessionSubpromptRunner, SessionInlineSubFlowRunner, driveOrchestratorTurn } from './chunk-VTXXBYB3.js';
-import { loadFlow, flowLookupRoots, findFlowFileInRoots, FLOW_FILE_EXTENSIONS } from './chunk-QELQDY5K.js';
+import { parseSkillFrontmatter, validateFlowVersions } from './chunk-WXKNM2JJ.js';
+import { FlowAdapter, SessionNodeExecutor, SessionSubpromptRunner, SessionInlineSubFlowRunner, driveOrchestratorTurn } from './chunk-DP6YRAPZ.js';
+import { loadFlow, flowLookupRoots, findFlowFileInRoots, FLOW_FILE_EXTENSIONS } from './chunk-N36S36OZ.js';
 import { renderStimulusPrompt } from './chunk-M3WPBTGJ.js';
 import { flowSkillVersionPins } from './chunk-7RGTAEG6.js';
-import { resolveSettings } from './chunk-OX2W5YF3.js';
+import { resolveSettings } from './chunk-4QINFQ27.js';
 import { findKindDirs } from './chunk-A2ULN3KX.js';
-import { resolveAgentDir, resolveSkWorkspaceConfig } from './chunk-CAPKENNF.js';
-import { isValidAssetName } from './chunk-J4OYIYFQ.js';
+import { resolveAgentDir, resolveSkWorkspaceConfig } from './chunk-J76LDUDS.js';
+import { isValidAssetName } from './chunk-VY6NTFE7.js';
 import { createLogger } from './chunk-BOFL7GIF.js';
 import fs from 'fs';
 import path from 'path';
@@ -54,7 +54,9 @@ async function runFlow(opts) {
     driver: opts.driver,
     model: opts.model
   });
-  const session = newSession({
+  const session = opts.resumeSession ? (({ error: _prior, ...kept }) => touchSession({ ...kept, status: "running" }))(
+    opts.resumeSession
+  ) : newSession({
     flowId: flow.id,
     projectDir: opts.projectDir,
     agentDir,
@@ -384,6 +386,7 @@ async function resumeFlow(opts) {
       driver: session.driver,
       model: session.model,
       sessionLabel: session.label,
+      resumeSession: session,
       dryRun: opts.dryRun,
       sessionTimeoutMs: opts.sessionTimeoutMs,
       onEvent: opts.onEvent,
@@ -530,5 +533,5 @@ function walkForSkill(dir, skillId) {
 }
 
 export { awaitAgentEnd, resolveFlowPath, resumeFlow, runFlow };
-//# sourceMappingURL=chunk-7LGNJJ76.js.map
-//# sourceMappingURL=chunk-7LGNJJ76.js.map
+//# sourceMappingURL=chunk-SCUEPCSJ.js.map
+//# sourceMappingURL=chunk-SCUEPCSJ.js.map

package/dist/chunk-SCUEPCSJ.js.map

@@ -0,0 +1 @@
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* runFlow / resumeFlow — CLI entry helpers for the flow connector.\n *\n * Moved from `runner/src/runner.ts` to `factory-assets/connectors/flow/run-flow.ts`\n * in Phase 3 of the flow-connector extraction (2026-05-08). Behaviour is\n * byte-identical to the previous runner-side implementation; only the log\n * source changes from `runner:flow:<runId>` to `flow-connector:run:<runId>`.\n *\n * The runner re-exports these symbols with a deprecation warning for one\n * release. CLI consumers should switch to\n * `import { runFlow, resumeFlow } from \"@skaile/workspaces/factory-assets/connectors/flow/run-flow\"`.\n *\n * Internal runner helpers (FlowOrchestrator, bootstrapRunnerLogStore,\n * createAgentSession, resolveDriverPaths, session helpers) are loaded lazily\n * via dynamic `await import(\"@skaile/workspaces/runner\")` inside\n * `loadRunnerModule()` below. The lazy load avoids a static package-level\n * cycle (runner → connectors → factory-assets → runner) — the cycle exists at\n * the workspace level but never resolves at module-load time because\n * factory-assets only ever calls `import` from inside an async function body.\n * The string-literal specifier preserves `bun --compile` and tsup static\n * analysis.\n */\n\nimport fs from \"node:fs\";\nimport path from \"node:path\";\nimport type { AgentEvent } from \"@skaile/workspaces/bridge\";\nimport {\n  findKindDirs,\n  isValidAssetName,\n  resolveAgentDir,\n  resolveSettings,\n  resolveSkWorkspaceConfig,\n} from \"@skaile/workspaces/core\";\nimport { createLogger } from \"@skaile/workspaces/core/logging\";\nimport { parseSkillFrontmatter, validateFlowVersions } from \"@skaile/workspaces/resolver\";\nimport { initTelemetry } from \"@skaile/workspaces/telemetry\";\nimport type { FlowExecution, FlowPromptEvent } from \"@skaile/workspaces/types\";\nimport * as z from \"zod\";\nimport { FlowAdapter } from \"./adapter.js\";\nimport {\n  findFlowFileInRoots,\n  FLOW_FILE_EXTENSIONS,\n  type FlowLookupMiss,\n  flowLookupRoots,\n  loadFlow,\n} from \"./engine/index.js\";\nimport { flowSkillVersionPins } from \"./engine/node-shape.js\";\nimport { SessionInlineSubFlowRunner } from \"./inline-sub-flow-host.js\";\nimport { SessionNodeExecutor } from \"./node-executor.js\";\nimport { driveOrchestratorTurn } from \"./orchestrator-turn.js\";\nimport { renderStimulusPrompt, type TurnStimulus } from \"./prompt-fragments.js\";\nimport { SessionSubpromptRunner } from \"./subprompt-runner.js\";\n\n/**\n * Lazy `import(\"@skaile/workspaces/runner\")` accessor. Cached on first call so\n * subsequent `runFlow` invocations don't re-evaluate the runner module.\n *\n * Dynamic ESM import is used (not `require`) so vitest and other ESM\n * bundlers honour their alias resolution — `require` would side-step the\n * configured aliases and pick up two distinct module instances when run\n * under vitest. The string-literal specifier ensures bun --compile keeps\n * the dependency (per the static-import-or-die rule in\n * connectors/CLAUDE.md).\n */\n// eslint-disable-next-line @typescript-eslint/no-explicit-any\nlet _runnerModule: any | undefined;\n// eslint-disable-next-line @typescript-eslint/no-explicit-any\nasync function loadRunnerModule(): Promise<any> {\n  if (_runnerModule) return _runnerModule;\n  _runnerModule = await import(\"@skaile/workspaces/runner\");\n  return _runnerModule;\n}\n\n/** Type-only re-export of SessionState so the runner tombstone shim still works. */\nexport type SessionState = import(\"@skaile/workspaces/runner\").SessionState;\n\n/** Maximum agent session duration (4 hours). Configurable via {@link RunOptions.sessionTimeoutMs}. */\nconst DEFAULT_SESSION_TIMEOUT_MS = 4 * 60 * 60 * 1000; // 4 hours\n\nconst FLOW_AGENT_OPERATION_NAMES = new Set([\n  \"get_available\",\n  \"get_state\",\n  \"get_globals\",\n  \"build_handoff\",\n  \"validate_node\",\n  \"start_node\",\n  \"request_approval\",\n  \"request_input\",\n  \"complete_node\",\n  \"skip_node\",\n  \"fail_node\",\n]);\n\n/**\n * Options for {@link runFlow}.\n *\n * Wraps `FlowOrchestrator` with autonomous mode turned on by default. First-class\n * gate nodes remain mandatory human decisions in every mode.\n *\n * @docLink packages/factory-assets/flow#run-flow\n */\nexport interface RunOptions {\n  /** The working directory for the project being orchestrated. */\n  projectDir: string;\n  /** Absolute path to the `.flow.yaml` or `.flow.json` definition file. */\n  flowPath: string;\n  /**\n   * Directory containing `agent.yaml`, `SOUL.md`, `RULES.md`, `knowledge/`.\n   * Resolved from `skaile.yaml` via `resolveAgentDir` when absent.\n   */\n  agentDir?: string;\n  /**\n   * Agent harness. Defaults to `settings.driver` (`\"omp\"` or `\"claude-sdk\"`).\n   */\n  driver?: string;\n  /**\n   */\n  /**\n   * Model name override. Falls back to `settings.model` when absent.\n   */\n  model?: string;\n  /**\n   * Path to a specific `settings.json` to load instead of the default\n   * layered resolution chain (project → parent → global → built-in defaults).\n   */\n  settingsFile?: string;\n  /**\n   * When `true`, prints the initial flow state without starting the agent\n   * and returns immediately.\n   */\n  dryRun?: boolean;\n  /**\n   * Per-session timeout in milliseconds. Defaults to\n   * {@link DEFAULT_SESSION_TIMEOUT_MS} (4 hours).\n   */\n  sessionTimeoutMs?: number;\n  /** Optional human-readable label shown in the session list. */\n  sessionLabel?: string;\n  /**\n   * The session `skaile resume` continues. Its run id is kept and its driver thread resumed,\n   * instead of starting a second session. Set by {@link resumeFlow}; not for other callers.\n   */\n  resumeSession?: SessionState;\n  /** Autonomous mode for CLI runs. Defaults to true; first-class gate nodes are never bypassed. */\n  autonomousMode?: boolean;\n  /**\n   * Called for each {@link AgentEvent} emitted during the run\n   * (e.g. `text`, `tool_call`, `state_changed`).\n   */\n  onEvent?: (event: AgentEvent) => void;\n  /**\n   * Called for each diagnostic log line. Defaults to `process.stdout`.\n   */\n  onLog?: (line: string) => void;\n}\n\n/**\n * Options for resuming an existing CLI session.\n *\n * Reconnects the driver's conversation thread (conversation history is\n * preserved via the stored `driverSessionId`) but restarts flow execution\n * from scratch — flow state is not persisted in CLI mode. For governed,\n * resumable flow runs use a host that persists flow state (e.g. the Skaile\n * platform).\n *\n * @docLink packages/factory-assets/flow#resume-flow\n */\nexport interface ResumeOptions {\n  /** The working directory for the project being orchestrated. */\n  projectDir: string;\n  /**\n   * Specific run ID to resume. When absent, the current session pointer\n   * at `<projectDir>/.skaile/current` is used.\n   */\n  sessionId?: string;\n  /**\n   * Agent definition directory override. Defaults to the directory stored\n   * in the session file.\n   */\n  agentDir?: string;\n  /**\n   * When `true`, prints the initial flow state without starting the agent\n   * and returns immediately.\n   */\n  dryRun?: boolean;\n  /**\n   * Per-session timeout in milliseconds. Defaults to\n   * {@link DEFAULT_SESSION_TIMEOUT_MS} (4 hours).\n   */\n  sessionTimeoutMs?: number;\n  /**\n   * Called for each {@link AgentEvent} emitted during the run.\n   */\n  onEvent?: RunOptions[\"onEvent\"];\n  /**\n   * Called for each diagnostic log line. Defaults to `process.stdout`.\n   */\n  onLog?: RunOptions[\"onLog\"];\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Start a new flow session from the CLI.\n *\n * Wraps `FlowOrchestrator` with autonomous mode turned on by default. The\n * runner remains idle between turns; first-class gates always park for a human\n * decision, including in autonomous mode. Non-CLI hosts (Skaile platform,\n * Pichi) use the orchestrator directly via the serve command surface and drive\n * gates through user actions.\n *\n * @docLink packages/factory-assets/flow#run-flow\n */\nexport async function runFlow(opts: RunOptions): Promise<void> {\n  const runner = await loadRunnerModule();\n  const {\n    bootstrapRunnerLogStore,\n    bootstrapCapabilityRegistry,\n    CapabilityRegistry,\n    createAgentSession,\n    createSessionStimulusBus,\n    defineCapability,\n    registerCompositionCapabilities,\n    resolveDriverPaths,\n    newSession,\n    saveSession,\n    touchSession,\n  } = runner;\n\n  const flow = loadFlow(opts.flowPath);\n  const agentDir = opts.agentDir ?? resolveAgentDir(opts.projectDir);\n  const settings = await resolveSettings(opts.projectDir, {\n    driver: opts.driver,\n    model: opts.model,\n  });\n\n  // `skaile resume` continues the session it was given: same run id, so the driver thread\n  // (`driverSessionId`) resumes and `session list` shows one run, not a second one (p850).\n  const session = opts.resumeSession\n    ? (({ error: _prior, ...kept }) => touchSession({ ...kept, status: \"running\" }))(\n        opts.resumeSession,\n      )\n    : newSession({\n        flowId: flow.id,\n        projectDir: opts.projectDir,\n        agentDir,\n        driver: settings.driver ?? \"omp\",\n        model: settings.model,\n        label: opts.sessionLabel,\n      });\n\n  // A dry run only prints the plan: it must not leave a `running` session behind.\n  if (!opts.dryRun) await saveSession(opts.projectDir, session);\n\n  // Bootstrap structured logging — registers a process-singleton LogStore.\n  // OnLogBridgeSink mirrors entries to opts.onLog when caller provides one,\n  // preserving back-compat with CLI hosts that consume plain text lines.\n  const wsConfigEarly = resolveSkWorkspaceConfig(opts.projectDir);\n  const { dispose: disposeLogStore } = bootstrapRunnerLogStore({\n    sessionId: session.runId,\n    projectDir: opts.projectDir,\n    yamlBlock: wsConfigEarly.logging,\n    onLog: opts.onLog,\n    // A host that takes lines through `onLog` prints them itself; the stdout\n    // sink would add every record again as a raw JSON line.\n    stdout: opts.onLog === undefined,\n  });\n  const flowLog = createLogger({\n    kind: \"flow-connector\",\n    subkind: \"run\",\n    instance: session.runId,\n  });\n  const log = (line: string) => flowLog.info(line);\n  const capabilityRegistry = new CapabilityRegistry();\n  bootstrapCapabilityRegistry(capabilityRegistry);\n  const capabilityHooks = {\n    sessionId: session.runId,\n    composeTools: () => capabilityRegistry.composeLLMTools(),\n    resolve: (name: string) =>\n      capabilityRegistry.list().find((cap: { name: string }) => cap.name === name) ?? null,\n    invoke: (name: string, input: unknown, _signal?: AbortSignal, callId?: string) =>\n      capabilityRegistry.invoke(name, input, { sessionId: session.runId, callId }),\n  };\n\n  try {\n    // ── Dry run ────────────────────────────────────────────────────────────\n    if (opts.dryRun) {\n      const adapter = new FlowAdapter();\n      const handle = await adapter.connect(\n        {\n          id: \"flow\",\n          driver: \"flow\",\n          access: \"read-only\" as const,\n          options: { flow, seed: { runId: session.runId, startedBy: \"cli\" } },\n        },\n        {}, // flow needs no connect context\n      );\n      const state = adapter.getExecution(handle);\n      const available = Object.values(state.nodes)\n        .filter((n) => n.status === \"available\")\n        .map((n) => n.id);\n      // The plan is the command's output, not a log event: print it as plain lines\n      // (no `[info] [flow-connector:run:…]` prefix from the log formatter).\n      const printPlan = opts.onLog ?? ((line: string) => console.log(line));\n      printPlan(`[dry-run] Flow: ${flow.name} (${flow.id})`);\n      printPlan(`[dry-run] Available: ${available.join(\", \") || \"(none)\"}`);\n      await adapter.disconnect(handle);\n      return;\n    }\n\n    await validatePinnedVersions(flow, opts.projectDir, log);\n\n    // ── Telemetry initialization ────────────────────────────────────────────\n    const wsConfig = wsConfigEarly;\n    const telemetry = await initTelemetry(wsConfig.telemetry);\n    const flowTrace = telemetry.startTrace({\n      name: `flow:${flow.id}`,\n      kind: \"flow_run\",\n      attributes: {\n        \"skaile.flow.id\": flow.id,\n        \"skaile.flow.run_id\": session.runId,\n      },\n    });\n\n    // ── Agent session setup ─────────────────────────────────────────────────\n    const driverPaths = resolveDriverPaths(settings);\n    const agentSession = await createAgentSession({\n      projectDir: opts.projectDir,\n      agentDir: session.agentDir,\n      driver: session.driver,\n      model: session.model,\n      resumeSessionId: session.driverSessionId,\n      projectClaudeMd: path.join(opts.projectDir, \"CLAUDE.md\"),\n      promptsDir: path.join(opts.projectDir, driverPaths.promptsDir),\n      sessionId: session.runId,\n      onLog: log,\n      telemetry,\n      trace: flowTrace,\n      wsConfig,\n      capabilities: capabilityHooks,\n      capabilityRegistry,\n    });\n    if (agentSession.composition?.discoverableEntries.length) {\n      registerCompositionCapabilities(\n        capabilityRegistry,\n        agentSession.composition.discoverableEntries,\n      );\n    }\n    const { driver } = agentSession;\n    const nodeExecutor = new SessionNodeExecutor({ workspaceDir: opts.projectDir });\n    // Same endpoints and credentials the session driver used: the registry\n    // and the credential env `createAgentSession` already resolved — not a\n    // new resolution, not a new secret channel.\n    const subpromptRunner = new SessionSubpromptRunner({\n      driverType: agentSession.driverType,\n      sessionModel: agentSession.model,\n      workspaceDir: opts.projectDir,\n      registry: agentSession.registry,\n      credentialEnv: agentSession.credentialEnv,\n      ...(agentSession.modelRef ? { modelRef: agentSession.modelRef } : {}),\n    });\n    let driverStarted = false;\n    const updatedSession = { ...session };\n\n    // Track driver session ID so future resumes can reconnect the SDK thread.\n    driver.on(\"agent-event\", () => {\n      const runtimeSessionId = driver.runtimeSessionId;\n      if (!runtimeSessionId || runtimeSessionId === updatedSession.driverSessionId) return;\n      updatedSession.driverSessionId = runtimeSessionId;\n      void saveSession(opts.projectDir, updatedSession).catch(() => {});\n    });\n\n    // ── FlowAdapter + stimulus bus ─────────────────────────────────────────\n    //\n    // Phase 4 of the flow-connector extraction: SessionStimulusBus is the sole\n    // turn driver. The legacy FlowOrchestrator + onStateChange subscription\n    // are gone — every turn is initiated either by the bus (after an adapter\n    // mutation observed via `useBusForStimulus: true`) or by an explicit\n    // `bus.signal()` call from this function (the initial flow_started turn).\n    //\n    // The bus's `driveTurn` callback receives the stimulus paragraph the\n    // adapter rendered (not the full orchestrator prompt). It hands the turn to\n    // `driveOrchestratorTurn`, which rebuilds the five-section prompt so the\n    // agent sees the same flow context the legacy orchestrator produced — and\n    // announces it, so a CLI consumer's `onEvent` stream carries the prompt too.\n    const flowConnectorId = \"flow\";\n    const turnTimeoutMs = opts.sessionTimeoutMs ?? DEFAULT_SESSION_TIMEOUT_MS;\n\n    const ensureDriverStarted = async (): Promise<void> => {\n      if (driverStarted) return;\n      await driver.start();\n      driverStarted = true;\n    };\n\n    // Same widening the `state_changed` forwarder below performs: `onEvent` is\n    // typed against the bridge's driver-level union, which has no case for a\n    // runtime-level event.\n    const emitFlowPrompt = (event: FlowPromptEvent): void => {\n      opts.onEvent?.(event as unknown as AgentEvent);\n    };\n\n    const inlineSubFlowRunner = new SessionInlineSubFlowRunner({\n      resolveFlow: (flowId) => loadFlow(resolveFlowPath(flowId, opts.projectDir)),\n      nodeExecutor,\n      subpromptRunner,\n      driveAgentTurn: async ({ flow: childFlow, execution, stimulus }) => {\n        await ensureDriverStarted();\n        await driveOrchestratorTurn({\n          flow: childFlow,\n          execution,\n          stimulus,\n          emit: emitFlowPrompt,\n          deliver: (prompt) => awaitAgentEnd(driver, prompt, opts.onEvent, turnTimeoutMs),\n        });\n      },\n    });\n\n    // Forward declaration so `driveTurn` can read the live execution\n    // snapshot. Assigned just below, before the bus can fire.\n    let flowAdapterRef: FlowAdapter | null = null;\n    let flowHandleRef: import(\"@skaile/workspaces/connectors\").ConnectorHandle | null = null;\n\n    const stimulusBus = createSessionStimulusBus({\n      driveTurn: async (\n        promptFragment: string,\n        metas: Array<Record<string, unknown>>,\n      ): Promise<void> => {\n        // The adapter signal carries `meta.kind` per stimulus. Use that to\n        // reconstruct the typed `TurnStimulus`; for compound batches, fall\n        // back to `state_changed` (the union element that means \"look at\n        // current state and continue\").\n        const lastKind = metas[metas.length - 1]?.kind;\n        let stimulus: TurnStimulus;\n        if (lastKind === \"flow_started\") {\n          stimulus = { kind: \"flow_started\" };\n        } else if (\n          lastKind === \"user_message\" &&\n          typeof metas[metas.length - 1]?.text === \"string\"\n        ) {\n          const meta = metas[metas.length - 1] as Record<string, unknown>;\n          stimulus = {\n            kind: \"user_message\",\n            text: String(meta.text ?? \"\"),\n            senderId: String(meta.senderId ?? \"user\"),\n          };\n        } else {\n          stimulus = { kind: \"state_changed\" };\n        }\n        // The fragment passed in by the bus is the adapter's\n        // `renderStimulusPrompt(stim)` joined across coalesced signals. It is\n        // discarded in favour of the structured stimulus, which\n        // `driveOrchestratorTurn` rebuilds the full prompt from; that keeps the\n        // prompt shape stable and the structured form already contains\n        // everything the fragment encoded.\n        void promptFragment;\n        if (!flowAdapterRef || !flowHandleRef) {\n          throw new Error(\"driveTurn fired before FlowAdapter was wired\");\n        }\n        await flowAdapterRef.drainRuntimeNodes(flowHandleRef);\n        const execution = flowAdapterRef.getExecution(flowHandleRef);\n        if (execution.done || execution.status === \"failed\" || execution.status === \"cancelled\") {\n          return;\n        }\n        if (!flowAdapterRef.shouldDriveAgentTurn(flowHandleRef, stimulus)) return;\n        await ensureDriverStarted();\n        await driveOrchestratorTurn({\n          flow,\n          execution,\n          stimulus,\n          emit: emitFlowPrompt,\n          deliver: (prompt) => awaitAgentEnd(driver, prompt, opts.onEvent, turnTimeoutMs),\n        });\n      },\n      log: flowLog,\n    });\n\n    const flowAdapter = new FlowAdapter();\n    const flowHandle = await flowAdapter.connect(\n      {\n        id: flowConnectorId,\n        driver: \"flow\",\n        access: \"read-write\" as const,\n        options: {\n          flow,\n          seed: {\n            runId: session.runId,\n            startedBy: \"cli\",\n            autonomousMode: opts.autonomousMode ?? true,\n          },\n          stimulusBus,\n          useBusForStimulus: true,\n          nodeExecutor,\n          subpromptRunner,\n          inlineSubFlowRunner,\n        },\n      },\n      {}, // flow needs no connect context\n    );\n    flowAdapterRef = flowAdapter;\n    flowHandleRef = flowHandle;\n\n    // Flow operations retain the connector's published bare protocol names;\n    // this is the intentional exception to generic capability namespaces.\n    for (const operation of flowAdapter.tools\n      .describeOperations(flowHandle)\n      .filter(({ name }) => FLOW_AGENT_OPERATION_NAMES.has(name))) {\n      const shape: Record<string, z.ZodType> = {};\n      for (const arg of operation.args) {\n        let schema: z.ZodType;\n        switch (arg.type) {\n          case \"boolean\":\n            schema = z.boolean();\n            break;\n          case \"number\":\n            schema = z.number();\n            break;\n          case \"json\":\n            schema = z.json();\n            break;\n          default:\n            schema = z.string();\n        }\n        shape[arg.name] = arg.required ? schema : schema.optional();\n      }\n      capabilityRegistry.register(\n        defineCapability({\n          name: operation.name,\n          displayName: operation.name,\n          description: operation.description,\n          input: z.object(shape),\n          side: \"agent\",\n          origin: { kind: \"flow\", flowId: flow.id },\n          scope: \"session\",\n          audience: [\"llm\"],\n          kind: operation.accessLevel === \"read\" ? \"query\" : \"effect\",\n          handler: async (args: Record<string, unknown>) =>\n            flowAdapter.executeOp(flowHandle, operation.name, args),\n        }),\n        \"agent\",\n      );\n    }\n\n    // Forward state_changed events to the caller. The bus computes a\n    // turn-kicking stimulus on each adapter mutation; the host-facing\n    // event stream still observes the full snapshot via onChange.\n    flowAdapter.onStateChange(flowHandle, (state: FlowExecution) => {\n      opts.onEvent?.({\n        type: \"state_changed\",\n        store: `flow:${state.runId}`,\n        state: state as unknown as Record<string, unknown>,\n      } as unknown as AgentEvent);\n    });\n\n    // ── Execute ────────────────────────────────────────────────────────────\n    flowLog.info(\"starting flow\", {\n      flowId: flow.id,\n      flowName: flow.name,\n      runId: session.runId,\n    });\n\n    let runError: unknown;\n    try {\n      // Kick the initial flow_started turn explicitly. Subsequent turns are\n      // driven by the bus signaling whenever the adapter mutates.\n      const initialStimulus: TurnStimulus = { kind: \"flow_started\" };\n      await stimulusBus.signal(flowConnectorId, {\n        promptFragment: renderStimulusPrompt(initialStimulus),\n        meta: { kind: initialStimulus.kind },\n      });\n\n      const finalState = flowAdapter.getExecution(flowHandle);\n      if (finalState.done) {\n        flowLog.info(\"flow complete\", { flowId: flow.id, flowName: flow.name });\n      } else if (finalState.status === \"failed\") {\n        flowLog.error(\"flow failed\", undefined, { flowId: flow.id, flowName: flow.name });\n      } else {\n        flowLog.warn(\"flow paused awaiting further stimulus\", {\n          flowId: flow.id,\n          status: finalState.status,\n          note: \"CLI mode does not supply human approval/input decisions\",\n        });\n      }\n    } catch (err) {\n      // The driver could not start (SDK missing, bad credentials, …): no node ran, so the\n      // session is `failed` with the cause, not a `paused` run that `resume` would pick up.\n      runError = err;\n      throw err;\n    } finally {\n      driver.kill();\n      const lastState = flowAdapter.getExecution(flowHandle);\n      const failed = runError !== undefined;\n      let status: \"complete\" | \"failed\" | \"paused\" = \"paused\";\n      if (failed) status = \"failed\";\n      else if (lastState.status === \"complete\") status = \"complete\";\n      await saveSession(\n        opts.projectDir,\n        touchSession({\n          ...updatedSession,\n          driverSessionId: driver.runtimeSessionId ?? updatedSession.driverSessionId,\n          status,\n          ...(failed\n            ? { error: runError instanceof Error ? runError.message : String(runError) }\n            : {}),\n        }),\n      ).catch(() => {});\n      await flowAdapter.disconnect(flowHandle).catch(() => {});\n      await agentSession.dispose();\n      telemetry.endTrace(flowTrace, {\n        status: flowAdapter.getExecution(flowHandle).status === \"complete\" ? \"ok\" : \"error\",\n      });\n      await telemetry.flush().catch(() => {});\n    }\n  } finally {\n    disposeLogStore();\n  }\n}\n\n/**\n * Resume an existing session from the CLI.\n *\n * With the Phase 2 turn-based model, flow state is NOT persisted to\n * local session files — only the driver session ID is kept. The CLI\n * can resume the agent's conversation thread, but the flow execution\n * itself starts from scratch because the runner has no durable store\n * for per-run state.\n *\n * For a governed, resumable flow run, use a host that persists flow\n * state (e.g. the Skaile platform). CLI resume is retained as a\n * driver-level convenience only: we load the session, restart the\n * flow, and the SDK will reconnect to the prior conversation thread.\n *\n * @docLink packages/factory-assets/flow#resume-flow\n */\nexport async function resumeFlow(opts: ResumeOptions): Promise<void> {\n  const runner = await loadRunnerModule();\n  const { loadSession, loadSessionById, bootstrapRunnerLogStore } = runner;\n\n  const session = opts.sessionId\n    ? await loadSessionById(opts.projectDir, opts.sessionId)\n    : await loadSession(opts.projectDir);\n\n  if (!session) {\n    const hint = opts.sessionId\n      ? `session ${opts.sessionId}`\n      : `current session in ${opts.projectDir}/.skaile`;\n    throw new Error(`No session found (${hint}) — run 'start' first`);\n  }\n\n  const flowPath = resolveFlowPath(session.flowId, opts.projectDir);\n\n  // Bootstrap a transient logger for the resume diagnostics. The inner\n  // runFlow() call will register its own LogStore for the new run. Keep\n  // OnLogBridgeSink wiring so callers passing onLog still see this line.\n  const wsConfigEarly = resolveSkWorkspaceConfig(opts.projectDir);\n  const { dispose: disposeLogStore } = bootstrapRunnerLogStore({\n    sessionId: session.runId,\n    projectDir: opts.projectDir,\n    yamlBlock: wsConfigEarly.logging,\n    onLog: opts.onLog,\n    stdout: opts.onLog === undefined,\n  });\n  const flowLog = createLogger({\n    kind: \"flow-connector\",\n    subkind: \"run\",\n    instance: session.runId,\n  });\n  flowLog.info(\"resuming session\", {\n    runId: session.runId,\n    flowId: session.flowId,\n    note: \"CLI mode does not persist flow state — flow restarts from scratch; driver thread resumes\",\n  });\n\n  try {\n    await runFlow({\n      projectDir: opts.projectDir,\n      flowPath,\n      agentDir: opts.agentDir ?? session.agentDir,\n      driver: session.driver,\n      model: session.model,\n      sessionLabel: session.label,\n      resumeSession: session,\n      dryRun: opts.dryRun,\n      sessionTimeoutMs: opts.sessionTimeoutMs,\n      onEvent: opts.onEvent,\n      onLog: opts.onLog,\n    });\n  } finally {\n    disposeLogStore();\n  }\n}\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\nasync function validatePinnedVersions(\n  flow: Awaited<ReturnType<typeof loadFlow>>,\n  projectDir: string,\n  log: (line: string) => void,\n): Promise<void> {\n  const pinnedNodes = flowSkillVersionPins(flow);\n  if (pinnedNodes.length === 0) return;\n\n  const skillVersions = new Map<string, string>();\n  const aiResourcesDir = findAiResourcesDir(projectDir);\n  if (aiResourcesDir) {\n    for (const node of pinnedNodes) {\n      const skillId = node.skillId;\n      if (skillVersions.has(skillId)) continue;\n      const skillPath = findSkillMd(aiResourcesDir, skillId);\n      if (skillPath) {\n        const content = fs.readFileSync(skillPath, \"utf-8\");\n        const fm = parseSkillFrontmatter(content);\n        skillVersions.set(skillId, fm.metadata?.version ?? fm.version ?? \"\");\n      }\n    }\n  }\n\n  const checks = validateFlowVersions(pinnedNodes, skillVersions);\n  const failures = checks.filter((c) => !c.satisfied);\n  if (failures.length > 0) {\n    const lines = failures.map(\n      (f) => `  ${f.nodeId}: wants ${f.requested}, found ${f.actual || \"(none)\"}`,\n    );\n    throw new Error(`Skill version mismatch:\\n${lines.join(\"\\n\")}`);\n  }\n  for (const c of checks.filter((c) => c.satisfied)) {\n    log(`  Version OK: ${c.skillId} ${c.actual} satisfies ${c.requested}`);\n  }\n}\n\n/**\n * Assert `found` sits inside one of `roots`.\n *\n * A backstop, not the primary control: `isValidAssetName` already rejects every\n * id containing a separator, and `findFlowFileInRoots` skips any candidate that\n * escapes its search dir. So on today's code this cannot fire — it is here to\n * fail loudly rather than silently if a future lookup stops enforcing\n * containment itself. Widening the accepted extensions must never widen which\n * paths are reachable, and this is the line that keeps that honest.\n */\nfunction assertContainedInAnyRoot(found: string, roots: string[], flowId: string): void {\n  const resolved = path.resolve(found);\n  const inside = roots.some((root) => {\n    const relative = path.relative(path.resolve(root), resolved);\n    return !relative.startsWith(\"..\") && !path.isAbsolute(relative);\n  });\n  if (!inside) {\n    throw new Error(`Flow path escapes its lookup root: ${JSON.stringify(flowId)}`);\n  }\n}\n\n/** One line per near-miss: a file that is right there but was still rejected. */\nfunction describeMisses(misses: FlowLookupMiss[], heading: string): string {\n  const seen = new Set<string>();\n  const lines: string[] = [];\n  for (const miss of misses) {\n    if (seen.has(miss.path)) continue;\n    seen.add(miss.path);\n    lines.push(\n      miss.reason === \"id-mismatch\"\n        ? `  ${miss.path}: declares id ${JSON.stringify(miss.declaredId ?? \"\")}`\n        : `  ${miss.path}: could not be parsed (${miss.error ?? \"unknown error\"})`,\n    );\n  }\n  return lines.length > 0 ? `\\n${heading}\\n${lines.join(\"\\n\")}` : \"\";\n}\n\n/**\n * Resolve one flow identity through the CLI/serve host's normal lookup order —\n * the same roots and filenames `skaile run` and `flow list` use, via\n * {@link flowLookupRoots} / {@link findFlowFileInRoots}. Resolution is by the\n * **declared** `id`, not by filename.\n *\n * @throws {Error} When `flowId` is not a canonical asset name, when no file\n *   declares it, or when a match somehow resolves outside every lookup root.\n */\nexport function resolveFlowPath(flowId: string, projectDir: string): string {\n  // Sub-flow targets and resumed session records are the two callers, so an\n  // identity that is not canonical is a bug in the caller, not a missing file.\n  if (!isValidAssetName(flowId)) {\n    throw new Error(`Invalid canonical flow identity: ${JSON.stringify(flowId)}`);\n  }\n\n  const roots = flowLookupRoots(projectDir);\n  const misses: FlowLookupMiss[] = [];\n  const found = findFlowFileInRoots(flowId, roots, { onMiss: (m) => misses.push(m) });\n  if (found) {\n    assertContainedInAnyRoot(found, roots, flowId);\n    return found;\n  }\n\n  // A file that is present but unparseable is a different problem from a missing\n  // one, and \"not found\" is the wrong headline for it — that exact misdirection\n  // is what this change exists to remove, so don't reintroduce it here.\n  if (misses.length > 0 && misses.every((m) => m.reason === \"unparseable\")) {\n    throw new Error(\n      `Flow ${flowId} was found but could not be loaded.` + describeMisses(misses, \"Candidates:\"),\n    );\n  }\n\n  const shown = roots.slice(0, 3).join(\", \");\n  const more = roots.length > 3 ? \", …\" : \"\";\n  // Spelled from FLOW_FILE_EXTENSIONS so the message cannot drift from the\n  // candidate list the lookup actually probes.\n  const accepted = FLOW_FILE_EXTENSIONS.map((ext) => `${flowId}${ext}`).join(\" | \");\n  throw new Error(\n    `Flow not found: ${flowId}. Searched ${roots.length} root(s) (${shown || \"none\"}${more}) ` +\n      `for ${accepted} — flat, or inside a ${flowId}/ directory.` +\n      describeMisses(misses, \"Near misses:\"),\n  );\n}\n\n/** Walk up from projectDir to find ai-assets/ */\nfunction findAiResourcesDir(projectDir: string): string | null {\n  let dir = projectDir;\n  for (let i = 0; i < 6; i++) {\n    const candidate = path.join(dir, \"ai-assets\");\n    if (fs.existsSync(candidate)) return candidate;\n    const parent = path.dirname(dir);\n    if (parent === dir) break;\n    dir = parent;\n  }\n  return null;\n}\n\n/** Find SKILL.md for a given skill ID in any `skills/` directory under ai-assets */\nfunction findSkillMd(aiResourcesDir: string, skillId: string): string | null {\n  for (const skillsDir of findKindDirs(aiResourcesDir, \"skills\")) {\n    const found = walkForSkill(skillsDir, skillId);\n    if (found) return found;\n  }\n  return null;\n}\n\n// ---------------------------------------------------------------------------\n// Turn-wait helper\n// ---------------------------------------------------------------------------\n\n/**\n * Minimal driver surface needed by the bus's `driveTurn` callback. Mirrors\n * the slice the legacy `FlowOrchestrator` consumed (`prompt` + `on` +\n * `removeAllListeners`) so we can keep the wait helper private to this\n * module without pulling in a runtime dep on `@skaile/workspaces/bridge`.\n */\ninterface TurnDriverSurface {\n  prompt(message: string): Promise<void>;\n  on(event: \"agent-event\", handler: (event: AgentEvent) => void): void;\n  removeAllListeners(event: \"agent-event\"): void;\n}\n\n/**\n * Send a prompt to the driver and resolve when the agent emits\n * `agent_end` (or reject on an `error` that is not an in-place retry).\n * Identical contract to the legacy `awaitAgentEnd` helper from\n * `flow-orchestrator.ts`. Phase 4 lifts the helper into `run-flow.ts` because\n * the bus now owns turn driving. Exported for tests only.\n */\nexport function awaitAgentEnd(\n  driver: TurnDriverSurface,\n  prompt: string,\n  onEvent: ((event: AgentEvent) => void) | undefined,\n  timeoutMs: number,\n): Promise<void> {\n  return new Promise<void>((resolve, reject) => {\n    let settled = false;\n\n    const done = (err?: Error) => {\n      if (settled) return;\n      settled = true;\n      clearTimeout(timer);\n      driver.removeAllListeners(\"agent-event\");\n      if (err) reject(err);\n      else resolve();\n    };\n\n    const timer = setTimeout(\n      () => done(new Error(`Flow turn timed out after ${timeoutMs / 1000}s`)),\n      timeoutMs,\n    );\n\n    driver.on(\"agent-event\", (event: AgentEvent) => {\n      onEvent?.(event);\n      if (event.type === \"agent_end\") done();\n      // An in-place retry replays this same turn; its own end settles it.\n      else if (event.type === \"error\" && event.retrying !== true) {\n        const msg =\n          (event as { error?: string; message?: string }).error ??\n          (event as { message?: string }).message ??\n          \"Agent error\";\n        done(new Error(msg));\n      }\n    });\n\n    driver.prompt(prompt).catch(done);\n  });\n}\n\nfunction walkForSkill(dir: string, skillId: string): string | null {\n  for (const entry of fs.readdirSync(dir, { withFileTypes: true })) {\n    if (!entry.isDirectory()) continue;\n    const full = path.join(dir, entry.name);\n    const skillMd = path.join(full, \"SKILL.md\");\n    if (fs.existsSync(skillMd)) {\n      if (entry.name === skillId) return skillMd;\n    } else {\n      const found = walkForSkill(full, skillId);\n      if (found) return found;\n    }\n  }\n  return null;\n}\n"]}

package/dist/{chunk-M3P4BYRK.js → chunk-SP5NGNBV.js}

@@ -1,4 +1,4 @@
-import { depToStr, parseDep, isValidAssetName, slugifyAssetName } from './chunk-J4OYIYFQ.js';
+import { depToStr, parseDep, isValidAssetName, slugifyAssetName } from './chunk-VY6NTFE7.js';
 import { createLogger } from './chunk-BOFL7GIF.js';
 import { stat, readFile, opendir } from 'fs/promises';
 import { basename, dirname, join } from 'path';
@@ -367,6 +367,9 @@ function fromMcpServerMdContent(content, repoName, filePath) {
   if (meta.recipe && typeof meta.recipe === "object" && !Array.isArray(meta.recipe)) {
     metadata.recipe = meta.recipe;
   }
+  if (meta.payload && typeof meta.payload === "object" && !Array.isArray(meta.payload)) {
+    metadata.payload = meta.payload;
+  }
   return {
     name: String(meta.name ?? basename(dirname(filePath))),
     kind: "mcp-server",
@@ -683,5 +686,5 @@ async function scanDirectory(root, repoName, options) {
 }
 
 export { DEFAULT_FS_DEADLINE_MS, DEFAULT_WALK_BUDGET_MS, DEFAULT_WALK_MAX_DEPTH, DEFAULT_WALK_MAX_ENTRIES, FS_DEADLINE_ENV_VAR, FsDeadlineError, ManifestKindError, WALK_BUDGET_MS_ENV_VAR, WALK_MAX_DEPTH_ENV_VAR, WALK_MAX_ENTRIES_ENV_VAR, agentYamlRequires, assetDepRefs, dedupeRequirementRefs, dedupeRequirements, fromAgentMd, fromAgentYaml, fromConnectorMd, fromContractMd, fromFlowYaml, fromKnowledgeYaml, fromMcpServerMd, fromMcpServerMdContent, fromPresetYaml, fromPromptMd, fromSkillMd, fsDeadlineMs, isManifestName, manifestKindDiagnostic, parseFrontmatter, parseRequires, presetItemRefs, requirementKey, scanDirectory, tryWithFsDeadline, walkDir, withFsDeadline };
-//# sourceMappingURL=chunk-M3P4BYRK.js.map
-//# sourceMappingURL=chunk-M3P4BYRK.js.map
+//# sourceMappingURL=chunk-SP5NGNBV.js.map
+//# sourceMappingURL=chunk-SP5NGNBV.js.map

package/dist/chunk-SP5NGNBV.js.map

@@ -0,0 +1 @@
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* Deadline guards for filesystem work that can land on a network mount.\n *\n * Inside the agent container `/skaile/workspace` **is** an rclone FUSE mount\n * (SharePoint / OneDrive / WebDAV). When the host rclone process wedges, a\n * filesystem call against that path parks in an uninterruptible kernel wait.\n * A **synchronous** call there stops the entire single-threaded event loop —\n * the whole `skaile serve` process stops serving, and the platform reads the\n * session as dead or idle. A hang is not an error, so `try/catch` never fires.\n *\n * Two rules follow, and both matter:\n *\n * 1. **Never touch a mount synchronously.** Async `node:fs/promises` keeps the\n *    loop free, so a wedged mount degrades to one stuck request instead of a\n *    dead session. This is the actual fix.\n * 2. **Bound the wait.** {@link withFsDeadline} converts an unbounded wait into\n *    a bounded failure so the requester gets an error rather than nothing.\n *\n * `withFsDeadline` does **not** cancel the underlying operation — Node cannot\n * abort a syscall already in the kernel. The losing promise stays pending until\n * the mount recovers or the process exits. That is acceptable precisely because\n * rule 1 holds: a pending promise costs one handle, not the event loop.\n *\n * Modelled on `connectors/src/fleet-utils.ts` (`ensureFleetMounted`), which\n * already does async-stat-with-deadline correctly.\n */\n\n/** Default deadline for a single filesystem operation on a possibly-networked mount. */\nexport const DEFAULT_FS_DEADLINE_MS = 15_000;\n\n/**\n * Env override for {@link DEFAULT_FS_DEADLINE_MS}, in milliseconds.\n *\n * A cloud-backed mount over a slow link can legitimately need longer than the\n * default; operators raise this rather than patching call sites.\n */\nexport const FS_DEADLINE_ENV_VAR = \"SKAILE_FS_DEADLINE_MS\";\n\n/**\n * Thrown when a filesystem operation misses its deadline.\n *\n * Distinct from a plain `Error` so callers can tell \"the mount is wedged\" apart\n * from \"the file does not exist\" and surface the right message to the frontend.\n */\nexport class FsDeadlineError extends Error {\n  readonly timeoutMs: number;\n  readonly operation: string;\n\n  constructor(operation: string, timeoutMs: number) {\n    super(\n      `filesystem operation \"${operation}\" exceeded ${timeoutMs}ms — the mount may be unresponsive`,\n    );\n    this.name = \"FsDeadlineError\";\n    this.operation = operation;\n    this.timeoutMs = timeoutMs;\n  }\n}\n\n/**\n * Resolve the effective filesystem deadline.\n *\n * Reads {@link FS_DEADLINE_ENV_VAR} on every call rather than caching it: the\n * runner mutates `process.env` while wiring a session, so a module-load-time\n * snapshot would pin the value set before configuration ran.\n *\n * @param fallback - Deadline to use when the env var is absent or unusable.\n * @returns The deadline in milliseconds.\n */\nexport function fsDeadlineMs(fallback: number = DEFAULT_FS_DEADLINE_MS): number {\n  const raw = process.env[FS_DEADLINE_ENV_VAR];\n  if (raw === undefined) return fallback;\n  const parsed = Number.parseInt(raw, 10);\n  // A non-positive or non-numeric override would disable the guard entirely,\n  // which is exactly the failure mode this module exists to prevent.\n  return Number.isFinite(parsed) && parsed > 0 ? parsed : fallback;\n}\n\n/**\n * Run an async filesystem operation under a deadline.\n *\n * @param operation - Short label used in the timeout message (e.g. `\"readdir /skaile/workspace\"`).\n * @param fn - Thunk performing the operation. Called immediately.\n * @param timeoutMs - Deadline override; defaults to {@link fsDeadlineMs}.\n * @returns The operation's result.\n * @throws {FsDeadlineError} when the deadline elapses first.\n * @throws Whatever `fn` rejects with, unchanged, when it loses no race.\n * @docLink packages/core/api-reference#with-fs-deadline\n */\nexport async function withFsDeadline<T>(\n  operation: string,\n  fn: () => Promise<T>,\n  timeoutMs: number = fsDeadlineMs(),\n): Promise<T> {\n  let timer: ReturnType<typeof setTimeout> | undefined;\n  try {\n    return await Promise.race([\n      fn(),\n      new Promise<never>((_resolve, reject) => {\n        timer = setTimeout(() => reject(new FsDeadlineError(operation, timeoutMs)), timeoutMs);\n        // Never hold the process open on the guard alone — without unref a\n        // pending deadline would keep `skaile serve` alive after shutdown.\n        timer.unref?.();\n      }),\n    ]);\n  } finally {\n    if (timer !== undefined) clearTimeout(timer);\n  }\n}\n\n/**\n * Run an async filesystem operation under a deadline, mapping every failure to\n * `fallback`.\n *\n * For best-effort probes that previously used `existsSync` — a missing file, an\n * unreadable file, and a wedged mount are all \"nothing usable here\", and the\n * caller has no better move than to continue without it.\n *\n * @param operation - Short label used in the timeout message.\n * @param fn - Thunk performing the operation.\n * @param fallback - Value returned when `fn` rejects or the deadline elapses.\n * @param timeoutMs - Deadline override; defaults to {@link fsDeadlineMs}.\n */\nexport async function tryWithFsDeadline<T>(\n  operation: string,\n  fn: () => Promise<T>,\n  fallback: T,\n  timeoutMs: number = fsDeadlineMs(),\n): Promise<T> {\n  try {\n    return await withFsDeadline(operation, fn, timeoutMs);\n  } catch {\n    return fallback;\n  }\n}\n","/**\n * Requirement identity — one key for \"asset X requires asset Y\", wherever the\n * declaration comes from (a SKILL.md `metadata.requires` entry, a manifest\n * `dependencies:` entry, a lock-time edge).\n *\n * A requirement is identified by `publisher/kind:name`. A declaration that names\n * no publisher means \"the declaring asset's own publisher\", so `report-table` on a\n * `@skaile-ai` asset and `skill:@skaile-ai/report-table` are the same requirement.\n * Every command that lists, dedupes or compares requirements goes through here.\n */\n\nimport { type Dependency, depToStr, parseDep } from \"./models.js\";\n\n/**\n * `publisher/kind:name` identity of a requirement. A dependency that names no\n * publisher takes `fallbackPublisher` (the declaring asset's); without either, the\n * key is the unqualified `kind:name`.\n */\nexport function requirementKey(dep: Dependency, fallbackPublisher?: string): string {\n  const publisher = dep.publisher ?? fallbackPublisher ?? \"\";\n  return publisher ? `${publisher}/${dep.kind}:${dep.name}` : `${dep.kind}:${dep.name}`;\n}\n\n/**\n * Each requirement once, in first-seen order. Two declarations of the same\n * {@link requirementKey} collapse into one; the surviving entry carries the\n * publisher and the pin of whichever declaration named them.\n */\nexport function dedupeRequirements(\n  deps: readonly Dependency[],\n  fallbackPublisher?: string,\n): Dependency[] {\n  const out: Dependency[] = [];\n  const at = new Map<string, number>();\n  for (const dep of deps) {\n    const key = requirementKey(dep, fallbackPublisher);\n    const i = at.get(key);\n    if (i === undefined) {\n      at.set(key, out.length);\n      out.push({ ...dep });\n      continue;\n    }\n    const kept = out[i] as Dependency;\n    if (!kept.publisher && dep.publisher) kept.publisher = dep.publisher;\n    if (!kept.pin && dep.pin) kept.pin = dep.pin;\n  }\n  return out;\n}\n\n/** {@link dedupeRequirements} for requirement strings (`kind:name[#pin]`, `kind:@pub/name[#pin]`). */\nexport function dedupeRequirementRefs(\n  refs: readonly string[],\n  fallbackPublisher?: string,\n): string[] {\n  const parse = (ref: string): Dependency => {\n    const dep = parseDep(ref);\n    // The scoped form carries its own pin; a bare `kind:name#pin` keeps it in the name.\n    const hash = dep.name.indexOf(\"#\");\n    if (hash === -1) return dep;\n    const pin = dep.name.slice(hash + 1).trim();\n    dep.name = dep.name.slice(0, hash);\n    if (pin && !dep.pin) dep.pin = pin;\n    return dep;\n  };\n  return dedupeRequirements(refs.map(parse), fallbackPublisher).map(depToStr);\n}\n","/**\n * Manifest parsing — reads SKILL.md, AGENT.md, agent.yaml, CONTRACT.md,\n * CONNECTOR.md, *.prompt.md, *.flow.yaml, *.preset.yaml files and\n * produces CatalogEntry objects.\n * Used by @skaile/asset-manager for on-demand repo scanning.\n *\n * **All filesystem access here is async and bounded** (issue #454). A repo root\n * can resolve onto the rclone FUSE mount at `/skaile/workspace` — either\n * directly (a `sources[].path` pointing into the workspace) or indirectly, since\n * the walk follows symlinks and an off-mount tree can link into one. A\n * synchronous `readdirSync`/`statSync`/`readFileSync` there parks the whole\n * `skaile serve` event loop in an uninterruptible kernel wait, and a hang is not\n * an error so `try/catch` never fires. Every call goes through\n * {@link withFsDeadline}/{@link tryWithFsDeadline}, and the walk itself is\n * bounded by depth, entry count, a wall-clock budget, and an ancestor-inode set.\n */\n\nimport type { Dirent } from \"node:fs\";\nimport { opendir, readFile, stat } from \"node:fs/promises\";\nimport { basename, dirname, join } from \"node:path\";\nimport { parse } from \"yaml\";\nimport { fsDeadlineMs, tryWithFsDeadline, withFsDeadline } from \"./fs-deadline.js\";\nimport { createLogger } from \"./logging/create-logger.js\";\nimport type { AssetKind, CatalogEntry, Dependency } from \"./models.js\";\nimport { isValidAssetName, parseDep, slugifyAssetName } from \"./models.js\";\nimport { dedupeRequirements } from \"./requirements.js\";\nimport type { Diagnostic } from \"./workspace-config.js\";\n\n// ── Bounded manifest I/O ──────────────────────────────────────────────────────\n\n/**\n * Read one manifest file under a deadline.\n *\n * @param filePath - Absolute path to the manifest.\n * @param timeoutMs - Per-operation deadline; defaults to {@link fsDeadlineMs}.\n * @throws {import(\"./fs-deadline.js\").FsDeadlineError} when the read outlives the deadline.\n */\nfunction readManifestFile(filePath: string, timeoutMs?: number): Promise<string> {\n  return withFsDeadline(`readFile ${filePath}`, () => readFile(filePath, \"utf8\"), timeoutMs);\n}\n\n/**\n * Read one manifest file under a deadline, degrading an unreadable/slow file to\n * an empty document. Mirrors the pre-#454 `try { readFileSync } catch {}` shape\n * of the YAML parsers: a file we cannot read yields `{}` metadata rather than\n * aborting the caller.\n */\nfunction readManifestFileOrEmpty(filePath: string, timeoutMs?: number): Promise<string> {\n  return tryWithFsDeadline(`readFile ${filePath}`, () => readFile(filePath, \"utf8\"), \"\", timeoutMs);\n}\n\n// ── Frontmatter helpers ───────────────────────────────────────────────────────\n\n/**\n * Result of parsing YAML frontmatter from a markdown file.\n * @docLink packages/core/concepts#frontmatter-result\n */\nexport interface FrontmatterResult {\n  /** Parsed YAML data. Empty object if no frontmatter block is present. */\n  data: Record<string, unknown>;\n  /** Markdown body below the frontmatter block (trimmed). */\n  body: string;\n}\n\n/**\n * Parse YAML frontmatter from a markdown file (`---` delimited).\n * Returns `{ data: {}, body: text }` when no frontmatter block is present.\n * A leading UTF-8 byte-order mark and `\\r\\n` line endings (Windows editors, `git` autocrlf)\n * are read as plain `\\n` text: the same file parses the same on every platform, and a\n * scalar never carries a trailing `\\r`.\n *\n * @param raw - Raw file contents\n * @returns Parsed frontmatter data and the remaining body text\n * @docLink packages/core/concepts#parse-frontmatter\n */\nexport function parseFrontmatter(raw: string): FrontmatterResult {\n  const text = raw.replace(/^\\uFEFF/, \"\").replace(/\\r\\n/g, \"\\n\");\n  const m = text.match(/^---\\s*\\n([\\s\\S]*?)\\n---/);\n  if (!m) return { data: {}, body: text.trim() };\n  try {\n    const data = (parse(m[1]!) as Record<string, unknown>) ?? {};\n    const body = text.slice(m[0].length).trim();\n    return { data, body };\n  } catch {\n    return { data: {}, body: text.trim() };\n  }\n}\n\n/** Extract version from frontmatter, checking both top-level and metadata.version. */\nfunction extractVersion(meta: Record<string, unknown>): string {\n  return String(\n    meta.version ?? (meta.metadata as Record<string, unknown> | undefined)?.version ?? \"\",\n  );\n}\n\n/**\n * Parse the `requires:` field from manifest frontmatter into typed `Dependency` objects.\n * Accepts a comma-separated string or an array of `\"kind:name\"` strings. Reads from either\n * the root or `metadata.requires` (matching `extractVersion`'s dual-location behavior) so\n * skill authors can follow the agentskills.io convention of placing skaile extensions under\n * `metadata:` while remaining backward-compatible with root-level declarations.\n *\n * @param meta - Parsed frontmatter data object\n * @returns Array of `Dependency` objects (empty when `requires` is absent)\n * @docLink packages/core/concepts#parse-requires\n */\nexport function parseRequires(meta: Record<string, unknown>): Dependency[] {\n  const raw = meta.requires ?? (meta.metadata as Record<string, unknown> | undefined)?.requires;\n  if (!raw) return [];\n  const list =\n    typeof raw === \"string\"\n      ? raw.split(\",\").map((s) => s.trim())\n      : Array.isArray(raw)\n        ? (raw as string[])\n        : [];\n  return list.filter(Boolean).map(parseDep);\n}\n\n// ── agent.yaml composes → requires ─────────────────────────────────────────────\n\n/**\n * Collect the catalog refs of an `agent.yaml` `composes[]` list as requires so\n * `skaile install` pulls them automatically. Local paths (`.`/`/`) and\n * `library://` instance refs are skipped — not catalog assets. A ref without a\n * `kind:` prefix takes the item's `kind`; the publisher scope, `@version` and\n * `#pin` are stripped so only `kind:name` is tracked.\n */\nfunction collectComposeRefs(raw: unknown, out: Dependency[]): void {\n  if (!Array.isArray(raw)) return;\n  for (const item of raw) {\n    if (typeof item !== \"object\" || item === null) continue;\n    const { kind: itemKind, ref } = item as Record<string, unknown>;\n    if (typeof ref !== \"string\" || !ref) continue;\n    if (ref.startsWith(\".\") || ref.startsWith(\"/\") || ref.includes(\"://\")) continue;\n    if (typeof itemKind !== \"string\" || !itemKind) continue;\n    const normalized = ref.includes(\":\") ? ref : `${itemKind}:${ref}`;\n    const colonIdx = normalized.indexOf(\":\");\n    const kind = normalized.slice(0, colonIdx).trim();\n    let rest = normalized.slice(colonIdx + 1).trim();\n    const hashIdx = rest.indexOf(\"#\");\n    if (hashIdx !== -1) rest = rest.slice(0, hashIdx).trim();\n    if (rest.startsWith(\"@\")) {\n      // Scoped form @publisher/name → name is the segment after the slash.\n      const slashIdx = rest.indexOf(\"/\");\n      rest = slashIdx !== -1 ? rest.slice(slashIdx + 1).trim() : \"\";\n    }\n    // A trailing `@<version>` range (`name@^1`) is not part of the name.\n    const atIdx = rest.indexOf(\"@\");\n    const name = atIdx !== -1 ? rest.slice(0, atIdx).trim() : rest;\n    if (name) out.push({ kind, name });\n  }\n}\n\n// ── Manifest parsers ──────────────────────────────────────────────────────────\n\n/**\n * Thrown when a `SKILL.md`-style manifest declares a `type:` that is not a\n * registered asset kind. The kind registry is the only authority on kinds, so an\n * unregistered `type:` is reported (see {@link manifestKindDiagnostic}) instead\n * of being silently catalogued as a skill.\n */\nexport class ManifestKindError extends Error {\n  constructor(\n    readonly filePath: string,\n    readonly kind: string,\n  ) {\n    super(`${filePath}: unknown asset kind \"${kind}\" in frontmatter \\`type:\\``);\n    this.name = \"ManifestKindError\";\n  }\n}\n\n/** Convert a {@link ManifestKindError} into the `unknown_asset_kind` error diagnostic. */\nexport function manifestKindDiagnostic(err: ManifestKindError): Diagnostic {\n  return {\n    code: \"unknown_asset_kind\",\n    severity: \"error\",\n    message: `${err.filePath}: asset kind \"${err.kind}\" is not registered`,\n    path: err.filePath,\n  };\n}\n\n/**\n * Parse a `SKILL.md` file into a `CatalogEntry`.\n * The `kind` field defaults to `\"skill\"` but can be overridden via the `type:`\n * frontmatter key to any registered kind. Falls back to the parent directory name\n * when `name:` is absent.\n *\n * Async since #454 — the file may live on the FUSE workspace mount.\n *\n * @param filePath - Absolute path to the `SKILL.md` file\n * @param repoName - Repository name used as the `repository` field of the entry\n * @param knownKinds - Registered asset kinds (`registry.getAllKinds()`); a `type:` outside it throws\n * @returns Populated `CatalogEntry` with kind, name, description, version, and requires\n * @throws {ManifestKindError} when `type:` names an unregistered kind\n * @docLink packages/core/concepts#from-skill-md\n */\nexport async function fromSkillMd(\n  filePath: string,\n  repoName: string,\n  knownKinds: ReadonlySet<string>,\n): Promise<CatalogEntry> {\n  return fromSkillMdContent(await readManifestFile(filePath), repoName, filePath, knownKinds);\n}\n\n/** Pure {@link fromSkillMd} core over already-read content (no I/O). */\nfunction fromSkillMdContent(\n  content: string,\n  repoName: string,\n  filePath: string,\n  knownKinds: ReadonlySet<string>,\n): CatalogEntry {\n  const { data: meta } = parseFrontmatter(content);\n  // An absent `type:` is the SKILL.md default; an explicit one must be registered.\n  const kind = meta.type === undefined ? \"skill\" : String(meta.type);\n  if (meta.type !== undefined && !knownKinds.has(kind)) throw new ManifestKindError(filePath, kind);\n  return {\n    name: String(meta.name ?? basename(dirname(filePath))),\n    kind,\n    description: String(meta.description ?? \"\"),\n    source: filePath,\n    publisher: repoName,\n    version: extractVersion(meta),\n    requires: parseRequires(meta),\n    dependencies: [],\n  };\n}\n\n/**\n * Parse an `AGENT.md` file into a `CatalogEntry` with `kind: \"agent\"`.\n * Falls back to the parent directory name when `name:` is absent.\n *\n * Async since #454 — the file may live on the FUSE workspace mount.\n *\n * @param filePath - Absolute path to the `AGENT.md` file\n * @param repoName - Repository name used as the `repository` field of the entry\n * @returns Populated `CatalogEntry` with kind `\"agent\"`\n * @docLink packages/core/concepts#from-agent-md\n */\nexport async function fromAgentMd(filePath: string, repoName: string): Promise<CatalogEntry> {\n  return fromAgentMdContent(await readManifestFile(filePath), repoName, filePath);\n}\n\n/** Pure {@link fromAgentMd} core over already-read content (no I/O). */\nfunction fromAgentMdContent(content: string, repoName: string, filePath: string): CatalogEntry {\n  const { data: meta } = parseFrontmatter(content);\n  return {\n    name: String(meta.name ?? basename(dirname(filePath))),\n    kind: \"agent\",\n    description: String(meta.description ?? \"\"),\n    source: filePath,\n    publisher: repoName,\n    version: extractVersion(meta),\n    requires: parseRequires(meta),\n    dependencies: [],\n  };\n}\n\n/**\n * Parse an `agent.yaml` file into a `CatalogEntry` with `kind: \"agent\"`.\n * `requires` lists the catalog refs of `composes[]` (local paths and `library://`\n * instances excluded). The deprecated 0.1 fields (`skills`, `requires`, `persona`,\n * …) are not read; `skaile validate` reports them.\n *\n * Async since #454 — the file may live on the FUSE workspace mount.\n *\n * @param filePath - Absolute path to the `agent.yaml` file\n * @param repoName - Repository name used as the `repository` field of the entry\n * @returns Populated `CatalogEntry` with kind `\"agent\"` and full dependency graph\n * @docLink packages/core/concepts#from-agent-yaml\n */\nexport async function fromAgentYaml(filePath: string, repoName: string): Promise<CatalogEntry> {\n  return fromAgentYamlContent(await readManifestFileOrEmpty(filePath), repoName, filePath);\n}\n\n/**\n * The catalog requirements of an `agent.yaml` text: its `composes[]` refs (see\n * {@link collectComposeRefs}). Empty for text that is not YAML.\n */\nexport function agentYamlRequires(content: string): Dependency[] {\n  let meta: Record<string, unknown> = {};\n  try {\n    meta = (parse(content) as Record<string, unknown>) ?? {};\n  } catch {}\n  const requires: Dependency[] = [];\n  collectComposeRefs(meta.composes, requires);\n  return requires;\n}\n\n/** Pure {@link fromAgentYaml} core over already-read content (no I/O). */\nfunction fromAgentYamlContent(content: string, repoName: string, filePath: string): CatalogEntry {\n  let meta: Record<string, unknown> = {};\n  try {\n    meta = (parse(content) as Record<string, unknown>) ?? {};\n  } catch {}\n\n  const requires = agentYamlRequires(content);\n  return {\n    name: String(meta.name ?? basename(dirname(filePath))),\n    kind: \"agent\",\n    description: String(meta.description ?? \"\"),\n    source: filePath,\n    publisher: repoName,\n    version: String(meta.version ?? \"\"),\n    requires,\n    dependencies: [],\n  };\n}\n\n/**\n * Parse a `*.prompt.md` file into a `CatalogEntry` with `kind: \"prompt\"`.\n * The name defaults to the filename stem (without the `.prompt.md` suffix)\n * when no `name:` frontmatter key is present.\n *\n * Async since #454 — the file may live on the FUSE workspace mount.\n *\n * @param filePath - Absolute path to the `.prompt.md` file\n * @param repoName - Repository name used as the `repository` field of the entry\n * @returns Populated `CatalogEntry` with kind `\"prompt\"`\n * @docLink packages/core/concepts#from-prompt-md\n */\nexport async function fromPromptMd(filePath: string, repoName: string): Promise<CatalogEntry> {\n  return fromPromptMdContent(await readManifestFile(filePath), repoName, filePath);\n}\n\n/** Pure {@link fromPromptMd} core over already-read content (no I/O). */\nfunction fromPromptMdContent(content: string, repoName: string, filePath: string): CatalogEntry {\n  const { data: meta } = parseFrontmatter(content);\n  const name = String(meta.name ?? basename(filePath).replace(/\\.prompt\\.md$/, \"\"));\n  return {\n    name,\n    kind: \"prompt\",\n    description: String(meta.description ?? \"\"),\n    source: filePath,\n    publisher: repoName,\n    version: extractVersion(meta),\n    requires: parseRequires(meta),\n    dependencies: [],\n  };\n}\n\n/**\n * Parse a `*.flow.yaml` or `*.flow.json` file into a `CatalogEntry` with `kind: \"flow\"`.\n * The name resolves from `id:` (a flow asset is named by its id, which the flow engine loads it\n * by), then `name:`, falling back to the filename stem; `name:` stays a display label.\n *\n * Async since #454 — the file may live on the FUSE workspace mount.\n *\n * @param filePath - Absolute path to the flow definition file\n * @param repoName - Repository name used as the `repository` field of the entry\n * @returns Populated `CatalogEntry` with kind `\"flow\"`\n * @docLink packages/core/concepts#from-flow-yaml\n */\nexport async function fromFlowYaml(filePath: string, repoName: string): Promise<CatalogEntry> {\n  return fromFlowYamlContent(await readManifestFileOrEmpty(filePath), repoName, filePath);\n}\n\n/**\n * The `kind:name[#pin]` refs the nodes of a v2 flow name in `run.assets`, deduped. They are the\n * flow's dependencies: `add flow:…` deploys them and `info` / `check` list them (p676). A string\n * without a `kind:` prefix is no asset ref and is left out.\n */\nfunction flowNodeAssetRefs(meta: Record<string, unknown>): string[] {\n  const refs = new Set<string>();\n  if (!Array.isArray(meta.nodes)) return [];\n  for (const node of meta.nodes) {\n    const run = (node as { run?: { assets?: unknown } } | null)?.run;\n    if (!Array.isArray(run?.assets)) continue;\n    for (const asset of run.assets) {\n      if (typeof asset === \"string\" && /^[a-z][a-z-]*:/.test(asset.trim())) refs.add(asset.trim());\n    }\n  }\n  return [...refs];\n}\n\n/** Pure {@link fromFlowYaml} core over already-read content (no I/O). */\nfunction fromFlowYamlContent(content: string, repoName: string, filePath: string): CatalogEntry {\n  let meta: Record<string, unknown> = {};\n  try {\n    meta = (parse(content) as Record<string, unknown>) ?? {};\n  } catch {}\n\n  const stem = basename(filePath)\n    .replace(/\\.flow\\.yaml$/, \"\")\n    .replace(/\\.flow\\.json$/, \"\");\n  return {\n    name: String(meta.id ?? meta.name ?? stem),\n    kind: \"flow\",\n    description: String(meta.description ?? \"\"),\n    source: filePath,\n    publisher: repoName,\n    version: String(meta.version ?? \"\"),\n    requires: parseRequires(meta),\n    dependencies: flowNodeAssetRefs(meta),\n  };\n}\n\n/**\n * Split a preset's `items[]` into the asset refs a dependency expansion installs\n * and the instance items it cannot: `library://` instance refs, `#item` cross\n * references, items that prompt for `placeholders`, and `connector:`/`mcp:` items\n * with an `id` (those become `skaile.yaml` declarations through\n * `skaile preset apply`). Refs are kept verbatim — publisher/pin qualifiers\n * preserved, nested `preset:` refs included.\n *\n * @param items - The raw `items` value of a parsed preset manifest.\n * @returns Deduped asset refs plus the count of skipped instance items.\n * @docLink packages/core/concepts#preset-item-refs\n */\nexport function presetItemRefs(items: unknown): { refs: string[]; skipped: number } {\n  const refs = new Set<string>();\n  let skipped = 0;\n  if (!Array.isArray(items)) return { refs: [], skipped };\n  for (const raw of items) {\n    if (raw === null || typeof raw !== \"object\") continue;\n    const item = raw as Record<string, unknown>;\n    const ref = typeof item.ref === \"string\" ? item.ref.trim() : \"\";\n    if (!ref) continue;\n    const hasPlaceholders = Array.isArray(item.placeholders) && item.placeholders.length > 0;\n    const declaresInstance =\n      typeof item.id === \"string\" && (ref.startsWith(\"connector:\") || ref.startsWith(\"mcp:\"));\n    if (\n      ref.startsWith(\"library://\") ||\n      ref.startsWith(\"#\") ||\n      hasPlaceholders ||\n      declaresInstance\n    ) {\n      skipped++;\n      continue;\n    }\n    refs.add(ref);\n  }\n  return { refs: [...refs], skipped };\n}\n\n/**\n * Parse a `*.preset.yaml` file into a `CatalogEntry` with `kind: \"preset\"`.\n * `dependencies` carries the asset refs of its items (see {@link presetItemRefs}).\n *\n * Async since #454 — the file may live on the FUSE workspace mount.\n *\n * @param filePath - Absolute path to the preset YAML file\n * @param repoName - Repository name used as the `repository` field of the entry\n * @returns Populated `CatalogEntry` with kind `\"preset\"`\n * @docLink packages/core/concepts#from-preset-yaml\n */\nexport async function fromPresetYaml(filePath: string, repoName: string): Promise<CatalogEntry> {\n  return fromPresetYamlContent(await readManifestFileOrEmpty(filePath), repoName, filePath);\n}\n\n/** Pure {@link fromPresetYaml} core over already-read content (no I/O). */\nfunction fromPresetYamlContent(content: string, repoName: string, filePath: string): CatalogEntry {\n  let meta: Record<string, unknown> = {};\n  try {\n    meta = (parse(content) as Record<string, unknown>) ?? {};\n  } catch {}\n\n  const { refs, skipped } = presetItemRefs(meta.items);\n  return {\n    name: String(meta.name ?? basename(filePath).replace(/\\.preset\\.yaml$/, \"\")),\n    kind: \"preset\",\n    description: String(meta.description ?? \"\"),\n    source: filePath,\n    publisher: repoName,\n    version: String(meta.version ?? \"\"),\n    requires: [],\n    dependencies: refs,\n    ...(skipped > 0 ? { skippedItems: skipped } : {}),\n  };\n}\n\n/**\n * Extract an asset's raw transitive dependency ref strings from its manifest\n * file, kept verbatim (publisher/pin qualifiers preserved, comments dropped by\n * the parser): a `*.preset.yaml`'s asset items (see {@link presetItemRefs}) or the\n * union of a `*.flow.{yaml,json}`'s top-level `requires` / `dependencies`. Unlike\n * {@link parseRequires}, refs are returned as-is — the resolver needs the full\n * `kind:@<publisher>/name[#pin]` form, not a publisher-stripped {@link Dependency}.\n *\n * Async since #454 — the file may live on the FUSE workspace mount.\n *\n * @param filePath - Absolute path to a `.preset.yaml` or `.flow.{yaml,json}`.\n * @returns Deduped `refs` (`[]` on parse failure or no deps) and the count of\n *   preset instance items that are not expanded.\n * @docLink packages/core/concepts#asset-dep-refs\n */\nexport async function assetDepRefs(filePath: string): Promise<{ refs: string[]; skipped: number }> {\n  return assetDepRefsFromContent(await readManifestFileOrEmpty(filePath), filePath);\n}\n\n/** Pure {@link assetDepRefs} core over already-read content (no I/O). */\nfunction assetDepRefsFromContent(\n  content: string,\n  filePath: string,\n): { refs: string[]; skipped: number } {\n  // YAML is a JSON superset, so `parse` reads `.flow.json` too.\n  let meta: Record<string, unknown> = {};\n  try {\n    meta = (parse(content) as Record<string, unknown>) ?? {};\n  } catch {\n    return { refs: [], skipped: 0 };\n  }\n  if (filePath.endsWith(\".preset.yaml\")) return presetItemRefs(meta.items);\n  const out: string[] = [];\n  const collect = (v: unknown) => {\n    if (Array.isArray(v))\n      for (const x of v) if (typeof x === \"string\" && x.trim()) out.push(x.trim());\n  };\n  collect(meta.requires);\n  collect((meta.metadata as Record<string, unknown> | undefined)?.requires);\n  collect(meta.dependencies);\n  return { refs: [...new Set(out)], skipped: 0 };\n}\n\n/**\n * Parse a `CONTRACT.md` file into a `CatalogEntry` with `kind: \"contract\"`.\n * Falls back to the parent directory name when `name:` is absent.\n *\n * Async since #454 — the file may live on the FUSE workspace mount.\n *\n * @param filePath - Absolute path to the `CONTRACT.md` file\n * @param repoName - Repository name used as the `repository` field of the entry\n * @returns Populated `CatalogEntry` with kind `\"contract\"`\n * @docLink packages/core/concepts#from-contract-md\n */\nexport async function fromContractMd(filePath: string, repoName: string): Promise<CatalogEntry> {\n  return fromContractMdContent(await readManifestFile(filePath), repoName, filePath);\n}\n\n/** Pure {@link fromContractMd} core over already-read content (no I/O). */\nfunction fromContractMdContent(content: string, repoName: string, filePath: string): CatalogEntry {\n  const { data: meta } = parseFrontmatter(content);\n  return {\n    name: String(meta.name ?? basename(dirname(filePath))),\n    kind: \"contract\",\n    description: String(meta.description ?? \"\"),\n    source: filePath,\n    publisher: repoName,\n    version: extractVersion(meta),\n    requires: parseRequires(meta),\n    dependencies: [],\n  };\n}\n\n/**\n * Parse an `MCP.md` file into a `CatalogEntry` with `kind: \"mcp-server\"`.\n * Falls back to the parent directory name when `name:` is absent.\n *\n * Frontmatter fields (catalog identity):\n *   - `name`        — server name (default: parent dir name)\n *   - `description` — short description\n *   - `version`     — semver\n *   - `keywords`    — array of discovery tags\n *\n * Frontmatter fields (runtime defaults, stored in `metadata`):\n *   - `transport`   — \"stdio\" | \"sse\" | \"http\" (default: \"stdio\")\n *   - `command`     — command to execute (stdio)\n *   - `args`        — command arguments (stdio)\n *   - `env`         — environment variables (stdio)\n *   - `url`         — server URL (sse/http)\n *   - `headers`     — HTTP headers (sse/http)\n *\n * When `mcp:name` appears in `skaile.yaml` `dependencies`, the runner reads\n * these defaults from `metadata` to build a `McpServerDeclaration` without\n * requiring verbose inline config.\n *\n * Async since #454 — the file may live on the FUSE workspace mount.\n *\n * @param filePath - Absolute path to the `MCP.md` file\n * @param repoName - Repository name used as the `repository` field of the entry\n * @returns Populated `CatalogEntry` with kind `\"mcp-server\"`\n * @docLink packages/core/concepts#from-mcp-server-md\n */\nexport async function fromMcpServerMd(filePath: string, repoName: string): Promise<CatalogEntry> {\n  return fromMcpServerMdContent(await readManifestFile(filePath), repoName, filePath);\n}\n\n/**\n * Parse pre-read MCP.md content into a `CatalogEntry`.\n * Callers that already hold the file content (e.g. to avoid a second read) use\n * this directly; `fromMcpServerMd` is a thin wrapper that reads then delegates here.\n *\n * @param content  - UTF-8 content of the `MCP.md` file\n * @param repoName - Repository name used as the `publisher` field of the entry\n * @param filePath - Absolute path (used as `source` and for name fallback)\n * @returns Populated `CatalogEntry` with kind `\"mcp-server\"`\n */\nexport function fromMcpServerMdContent(\n  content: string,\n  repoName: string,\n  filePath: string,\n): CatalogEntry {\n  const { data: meta } = parseFrontmatter(content);\n\n  // Extract runtime defaults into metadata\n  const metadata: Record<string, unknown> = {};\n  if (meta.transport) metadata.transport = String(meta.transport);\n  if (meta.command) metadata.command = String(meta.command);\n  if (Array.isArray(meta.args)) metadata.args = meta.args.map(String);\n  if (meta.env && typeof meta.env === \"object\" && !Array.isArray(meta.env)) {\n    metadata.env = meta.env as Record<string, string>;\n  }\n  if (meta.url) metadata.url = String(meta.url);\n  if (typeof meta.ca === \"string\") metadata.ca = meta.ca;\n  if (meta.headers && typeof meta.headers === \"object\" && !Array.isArray(meta.headers)) {\n    metadata.headers = meta.headers as Record<string, string>;\n  }\n  if (meta.recipe && typeof meta.recipe === \"object\" && !Array.isArray(meta.recipe)) {\n    metadata.recipe = meta.recipe;\n  }\n  if (meta.payload && typeof meta.payload === \"object\" && !Array.isArray(meta.payload)) {\n    metadata.payload = meta.payload;\n  }\n\n  return {\n    name: String(meta.name ?? basename(dirname(filePath))),\n    kind: \"mcp-server\",\n    description: String(meta.description ?? \"\"),\n    source: filePath,\n    publisher: repoName,\n    version: extractVersion(meta),\n    requires: parseRequires(meta),\n    dependencies: [],\n    metadata: Object.keys(metadata).length > 0 ? metadata : undefined,\n  };\n}\n\n/**\n * Parse a `knowledge.yaml` file into a `CatalogEntry` with `kind: \"knowledge\"`.\n * Falls back to the parent directory name when `name:` is absent.\n *\n * Async since #454 — the file may live on the FUSE workspace mount.\n *\n * @param filePath - Absolute path to the `knowledge.yaml` file\n * @param repoName - Repository name used as the `repository` field of the entry\n * @returns Populated `CatalogEntry` with kind `\"knowledge\"`\n * @docLink packages/core/concepts#from-knowledge-yaml\n */\nexport async function fromKnowledgeYaml(filePath: string, repoName: string): Promise<CatalogEntry> {\n  return fromKnowledgeYamlContent(await readManifestFileOrEmpty(filePath), repoName, filePath);\n}\n\n/** Pure {@link fromKnowledgeYaml} core over already-read content (no I/O). */\nfunction fromKnowledgeYamlContent(\n  content: string,\n  repoName: string,\n  filePath: string,\n): CatalogEntry {\n  let meta: Record<string, unknown> = {};\n  try {\n    meta = (parse(content) as Record<string, unknown>) ?? {};\n  } catch {}\n  return {\n    name: String(meta.name ?? basename(dirname(filePath))),\n    kind: \"knowledge\",\n    description: String(meta.description ?? \"\"),\n    source: filePath,\n    publisher: repoName,\n    version: String(meta.version ?? \"\"),\n    requires: parseRequires(meta),\n    dependencies: [],\n  };\n}\n\n/**\n * Parse a `CONNECTOR.md` file into a `CatalogEntry` with `kind: \"connector\"`.\n * Falls back to the parent directory name when `name:` is absent.\n *\n * Frontmatter fields (catalog identity):\n *   - `name`        — connector name (default: parent dir name)\n *   - `description` — short description\n *   - `version`     — semver\n *\n * Frontmatter fields (runtime defaults, stored in `metadata`):\n *   - `entry`        — adapter entry point (default: \"./adapter.ts\")\n *   - `npm_deps`     — npm dependencies required by the adapter\n *   - `fields`       — configuration fields the adapter expects\n *   - `health_check` — whether to run a health check on connect\n *\n * The markdown body (below the frontmatter) is stored in `metadata.body`\n * so the runner can inject the connector's skill description into the\n * system prompt when `expose_as_skill` is enabled.\n *\n * Async since #454 — the file may live on the FUSE workspace mount.\n *\n * @param filePath - Absolute path to the `CONNECTOR.md` file\n * @param repoName - Repository name used as the `repository` field of the entry\n * @returns Populated `CatalogEntry` with kind `\"connector\"`\n * @docLink packages/core/concepts#from-connector-md\n */\nexport async function fromConnectorMd(filePath: string, repoName: string): Promise<CatalogEntry> {\n  return fromConnectorMdContent(await readManifestFile(filePath), repoName, filePath);\n}\n\n/** Pure {@link fromConnectorMd} core over already-read content (no I/O). */\nfunction fromConnectorMdContent(content: string, repoName: string, filePath: string): CatalogEntry {\n  const { data: meta, body } = parseFrontmatter(content);\n  const name = String(meta.name ?? basename(dirname(filePath)));\n  return {\n    name,\n    kind: \"connector\" as AssetKind,\n    description: String(meta.description ?? \"\"),\n    source: filePath,\n    publisher: repoName,\n    version: extractVersion(meta),\n    requires: parseRequires(meta),\n    dependencies: [],\n    metadata: {\n      entry: meta.entry ?? \"./adapter.ts\",\n      npm_deps: meta.npm_deps ?? {},\n      fields: meta.fields ?? [],\n      health_check: meta.health_check ?? null,\n      body,\n    },\n  };\n}\n\n// ── Recursive walker ──────────────────────────────────────────────────────────\n\ninterface WalkEntry {\n  path: string;\n  name: string;\n}\n\n/** Default maximum directory nesting the walk descends into. */\nexport const DEFAULT_WALK_MAX_DEPTH = 32;\n\n/** Default maximum number of directory entries a single walk may examine. */\nexport const DEFAULT_WALK_MAX_ENTRIES = 50_000;\n\n/** Default wall-clock budget for one whole walk / scan pass, in milliseconds. */\nexport const DEFAULT_WALK_BUDGET_MS = 60_000;\n\n/** Env override for {@link DEFAULT_WALK_MAX_DEPTH}. */\nexport const WALK_MAX_DEPTH_ENV_VAR = \"SKAILE_SCAN_MAX_DEPTH\";\n\n/** Env override for {@link DEFAULT_WALK_MAX_ENTRIES}. */\nexport const WALK_MAX_ENTRIES_ENV_VAR = \"SKAILE_SCAN_MAX_ENTRIES\";\n\n/** Env override for {@link DEFAULT_WALK_BUDGET_MS}. */\nexport const WALK_BUDGET_MS_ENV_VAR = \"SKAILE_SCAN_DEADLINE_MS\";\n\n/** Read a positive-integer env override, falling back when absent or unusable. */\nfunction envInt(name: string, fallback: number): number {\n  const raw = process.env[name];\n  if (raw === undefined) return fallback;\n  const parsed = Number.parseInt(raw, 10);\n  return Number.isFinite(parsed) && parsed > 0 ? parsed : fallback;\n}\n\n/**\n * Why a walk stopped early. Every one of these means the returned entries are a\n * **partial** view of the tree — never present a truncated walk as complete.\n *\n * @docLink packages/core/concepts#walk-dir\n */\nexport interface WalkTruncation {\n  reason: \"depth\" | \"entries\" | \"budget\" | \"cycle\" | \"unreadable\";\n  /** Directory (or symlink) at which the bound was hit. */\n  path: string;\n  /** The bound that was hit, when the reason has a numeric limit. */\n  limit?: number;\n}\n\n/**\n * Bounds for {@link walkDir} / {@link scanDirectory}.\n *\n * @docLink packages/core/concepts#walk-dir\n */\nexport interface WalkOptions {\n  /** Maximum nesting depth below the root. Default {@link DEFAULT_WALK_MAX_DEPTH}. */\n  maxDepth?: number;\n  /** Maximum directory entries examined across the whole walk. Default {@link DEFAULT_WALK_MAX_ENTRIES}. */\n  maxEntries?: number;\n  /**\n   * Wall-clock budget for the whole walk. Default {@link DEFAULT_WALK_BUDGET_MS}.\n   * The check is inclusive, so `0` yields no entries at all.\n   */\n  budgetMs?: number;\n  /** Per-`opendir`/`stat`/`readFile` deadline. Default {@link fsDeadlineMs}. */\n  opTimeoutMs?: number;\n  /**\n   * Called once per distinct truncation reason. Defaults to a `warn` on the\n   * core logger — override to route the signal somewhere the caller can act on.\n   */\n  onTruncate?: (info: WalkTruncation) => void;\n}\n\n/**\n * Options for {@link scanDirectory}: the walk bounds plus the registered kind set\n * (`new Set(registry.getAllKinds())`) that typed frontmatter is checked against.\n */\nexport interface ScanOptions extends WalkOptions {\n  /** Registered asset kinds; a `SKILL.md` `type:` outside it is reported, not catalogued. */\n  knownKinds: ReadonlySet<string>;\n  /** Sink for scan diagnostics (`unknown_asset_kind`). Defaults to a `warn` on the core logger. */\n  onDiagnostic?: (diagnostic: Diagnostic) => void;\n  /**\n   * Return every asset found instead of one per `kind:name`. The default keeps the\n   * alphabetically later source path, which hides a second directory holding the\n   * same asset; a caller that must report such duplicates (`library index`) sets this.\n   */\n  keepDuplicates?: boolean;\n}\n\n/** Mutable bookkeeping threaded through one walk. */\ninterface WalkState {\n  maxDepth: number;\n  maxEntries: number;\n  opTimeoutMs: number | undefined;\n  deadlineAt: number;\n  examined: number;\n  /**\n   * `dev:ino` of the directories on the **current path from the root** — an\n   * ancestor stack, not an ever-visited set. Re-entering an ancestor is a cycle;\n   * re-reaching a directory off the current path is a diamond, and must be walked.\n   */\n  ancestors: Set<string>;\n  reported: Set<WalkTruncation[\"reason\"]>;\n  onTruncate: (info: WalkTruncation) => void;\n}\n\nlet walkLogger: ReturnType<typeof createLogger> | undefined;\n\n/** `root` + reason pairs already warned about in this process (see {@link warnTruncation}). */\nconst warnedTruncations = new Set<string>();\n\n/**\n * Default truncation sink: a warning naming the walked directory (the library) and the bound\n * that was hit, once per directory and reason for the whole process. A command that looks at\n * several libraries (`add`, `search --local`) walks each more than once; a symlink cycle in one\n * of them must not repeat on every walk (p524). A cycle says what to do: remove the symlink.\n */\nfunction warnTruncation(info: WalkTruncation, root: string): void {\n  const key = `${root}\\0${info.reason}`;\n  if (warnedTruncations.has(key)) return;\n  warnedTruncations.add(key);\n  walkLogger ??= createLogger({ kind: \"runner\", subkind: \"asset-scan\" });\n  if (info.reason === \"cycle\") {\n    walkLogger.warn(\n      `asset scan truncated (cycle) — results are incomplete: in ${root}, the symlink ${info.path} points back into the tree; remove the symlink`,\n    );\n    return;\n  }\n  walkLogger.warn(`asset scan truncated (${info.reason}) — results are incomplete: ${root}`, {\n    ...info,\n  });\n}\n\n/** Default diagnostic sink for {@link scanDirectory}. */\nfunction warnDiagnostic(d: Diagnostic): void {\n  walkLogger ??= createLogger({ kind: \"runner\", subkind: \"asset-scan\" });\n  walkLogger.warn(d.message, { code: d.code, path: d.path });\n}\n\n/** Record a truncation once per reason so a wide tree does not spam the log. */\nfunction truncate(state: WalkState, info: WalkTruncation): void {\n  if (state.reported.has(info.reason)) return;\n  state.reported.add(info.reason);\n  state.onTruncate(info);\n}\n\n/**\n * Stable identity (`dev:ino`) of the directory `path` resolves to, or `null`\n * when it cannot be stat'ed within the deadline. Used to terminate symlink\n * cycles — the pre-#454 walker recursed forever on `a/link -> a`.\n */\nasync function dirIdentity(path: string, timeoutMs: number | undefined): Promise<string | null> {\n  const st = await tryWithFsDeadline(`stat ${path}`, () => stat(path), null, timeoutMs);\n  return st ? `${st.dev}:${st.ino}` : null;\n}\n\n/**\n * Read one directory's entries under a deadline, capped at the walk's remaining\n * entry budget. Uses `opendir` rather than `readdir` so a pathological directory\n * streams instead of materialising in full; entries are collected and sorted\n * because the `scanDirectory` dedup rule (\"alphabetically later source wins\")\n * depends on a deterministic per-level order.\n */\nasync function readDirEntries(\n  dir: string,\n  state: WalkState,\n): Promise<{ entries: Dirent[]; capped: boolean } | null> {\n  const remaining = state.maxEntries - state.examined;\n  if (remaining <= 0) return { entries: [], capped: true };\n  try {\n    return await withFsDeadline(\n      `opendir ${dir}`,\n      async () => {\n        const handle = await opendir(dir);\n        const entries: Dirent[] = [];\n        let capped = false;\n        for await (const e of handle) {\n          // Stop *before* keeping the over-budget entry, so `capped` means \"an\n          // entry was actually dropped\". Breaking after the push instead marked\n          // a directory of exactly `remaining` entries as truncated — and since\n          // `truncate()` reports once per reason for the whole walk, that\n          // spurious first report swallowed a later genuine one.\n          if (entries.length >= remaining) {\n            capped = true;\n            break;\n          }\n          entries.push(e);\n        }\n        entries.sort((a, b) => (a.name < b.name ? -1 : 1));\n        return { entries, capped };\n      },\n      state.opTimeoutMs,\n    );\n  } catch {\n    // Unreadable (permissions, vanished mid-walk) or the mount missed its\n    // deadline. Either way this subtree contributes nothing; keep walking.\n    truncate(state, { reason: \"unreadable\", path: dir });\n    return null;\n  }\n}\n\n/**\n * Recursively yield every file entry under `dir`, sorted alphabetically at each\n * level. Skips `.git` and `node_modules` directories and follows symlinks\n * (resolving to the stat target). `node_modules` is excluded because Bun's\n * `node_modules/.bun/...` layout contains symlink farms that form cycles when\n * packages reference each other transitively.\n *\n * **Async and bounded since #454.** A repo root can resolve onto the rclone FUSE\n * mount, where the previous synchronous `readdirSync`/`statSync` walk parked the\n * whole event loop. Four bounds now hold, and hitting any of them reports a\n * {@link WalkTruncation} — a truncated walk is never presented as a complete one:\n *\n * - **depth** ({@link WalkOptions.maxDepth}) — also the backstop for a cycle no\n *   inode check can see, e.g. a bind mount of the root inside itself.\n * - **entry count** ({@link WalkOptions.maxEntries}) — total directory entries\n *   examined, so an enormous tree cannot run unbounded.\n * - **wall-clock budget** ({@link WalkOptions.budgetMs}) — a wedged mount that\n *   times out one operation at a time cannot add up to an unbounded scan.\n * - **ancestor inodes** — the `dev:ino` of every directory on the path from the\n *   root is held while its subtree is walked, so `a/link -> a` terminates\n *   instead of recursing forever. Two sibling symlinks onto one shared\n *   directory are a diamond, not a cycle: both are walked, at the price of\n *   visiting the shared subtree twice — bounded by the entry and time budgets.\n *\n * @param dir - Absolute path to the directory to walk\n * @param options - Bounds and truncation sink; see {@link WalkOptions}\n * @docLink packages/core/concepts#walk-dir\n */\nexport async function* walkDir(dir: string, options: WalkOptions = {}): AsyncGenerator<WalkEntry> {\n  const state: WalkState = {\n    maxDepth: options.maxDepth ?? envInt(WALK_MAX_DEPTH_ENV_VAR, DEFAULT_WALK_MAX_DEPTH),\n    maxEntries: options.maxEntries ?? envInt(WALK_MAX_ENTRIES_ENV_VAR, DEFAULT_WALK_MAX_ENTRIES),\n    opTimeoutMs: options.opTimeoutMs,\n    deadlineAt:\n      Date.now() + (options.budgetMs ?? envInt(WALK_BUDGET_MS_ENV_VAR, DEFAULT_WALK_BUDGET_MS)),\n    examined: 0,\n    ancestors: new Set<string>(),\n    reported: new Set<WalkTruncation[\"reason\"]>(),\n    onTruncate: options.onTruncate ?? ((info) => warnTruncation(info, dir)),\n  };\n  // The root is an ancestor of everything, so it is seeded here and never\n  // popped — a self-referential `root/link -> root` is caught on first descent.\n  const rootId = await dirIdentity(dir, state.opTimeoutMs);\n  if (rootId) state.ancestors.add(rootId);\n  yield* walkFrom(dir, 0, state);\n}\n\nasync function* walkFrom(dir: string, depth: number, state: WalkState): AsyncGenerator<WalkEntry> {\n  if (depth > state.maxDepth) {\n    truncate(state, { reason: \"depth\", path: dir, limit: state.maxDepth });\n    return;\n  }\n  if (Date.now() >= state.deadlineAt) {\n    truncate(state, { reason: \"budget\", path: dir });\n    return;\n  }\n\n  const read = await readDirEntries(dir, state);\n  if (!read) return;\n  if (read.capped) truncate(state, { reason: \"entries\", path: dir, limit: state.maxEntries });\n\n  for (const e of read.entries) {\n    if (state.examined >= state.maxEntries) {\n      truncate(state, { reason: \"entries\", path: dir, limit: state.maxEntries });\n      return;\n    }\n    if (Date.now() >= state.deadlineAt) {\n      truncate(state, { reason: \"budget\", path: dir });\n      return;\n    }\n    state.examined++;\n    const full = join(dir, e.name);\n\n    if (e.isSymbolicLink()) {\n      // A symlink is the only way a cycle can enter this walk, so identity is\n      // resolved here and nowhere else — one extra stat per link, none per\n      // ordinary directory.\n      const st = await tryWithFsDeadline(`stat ${full}`, () => stat(full), null, state.opTimeoutMs);\n      if (!st) continue;\n      if (st.isDirectory()) {\n        if (e.name === \".git\" || e.name === \"node_modules\") continue;\n        const id = `${st.dev}:${st.ino}`;\n        // Only an *ancestor* is a cycle. A target already walked elsewhere in\n        // the tree is a diamond (`a/link -> shared`, `b/link -> shared`) and\n        // dropping it would silently lose that subtree from the scan.\n        if (state.ancestors.has(id)) {\n          truncate(state, { reason: \"cycle\", path: full });\n          continue;\n        }\n        state.ancestors.add(id);\n        try {\n          yield* walkFrom(full, depth + 1, state);\n        } finally {\n          // finally, not a trailing delete: an early `return` from the bounds\n          // checks — or an abandoned consumer — would otherwise leave the\n          // ancestor stack holding a directory the walk has already left.\n          state.ancestors.delete(id);\n        }\n      } else {\n        yield { path: full, name: e.name };\n      }\n    } else if (e.isDirectory()) {\n      if (e.name !== \".git\" && e.name !== \"node_modules\") yield* walkFrom(full, depth + 1, state);\n    } else if (e.isFile()) {\n      yield { path: full, name: e.name };\n    }\n  }\n}\n\n// ── Public scanner ────────────────────────────────────────────────────────────\n\n/**\n * Coerce a scanned entry's `name` to a canonical asset name in place. When the\n * raw name is already canonical this is a no-op; otherwise the original is stashed\n * on `metadata.displayName` (only when not already set) so callers keep the pretty\n * label for display while identity uses the slug. A name that slugifies to empty\n * is left untouched — `parseAssetRef` will reject it downstream with its full hint.\n */\nfunction normalizeEntryName(e: CatalogEntry): void {\n  if (isValidAssetName(e.name)) return;\n  let slug: string;\n  try {\n    slug = slugifyAssetName(e.name);\n  } catch {\n    return;\n  }\n  const original = e.name;\n  e.name = slug;\n  if (e.metadata?.displayName === undefined) {\n    e.metadata = { ...e.metadata, displayName: original };\n  }\n}\n\n/**\n * Build a `CatalogEntry` from an already-read manifest, dispatching on filename.\n * Returns `null` when the filename is not a recognized manifest.\n */\nfunction entryFromManifest(\n  name: string,\n  content: string,\n  filePath: string,\n  repoName: string,\n  knownKinds: ReadonlySet<string>,\n): CatalogEntry | null {\n  if (name === \"SKILL.md\") return fromSkillMdContent(content, repoName, filePath, knownKinds);\n  if (name === \"AGENT.md\") return fromAgentMdContent(content, repoName, filePath);\n  if (name === \"agent.yaml\") return fromAgentYamlContent(content, repoName, filePath);\n  if (name === \"CONTRACT.md\") return fromContractMdContent(content, repoName, filePath);\n  if (name === \"MCP.md\") return fromMcpServerMdContent(content, repoName, filePath);\n  if (name === \"CONNECTOR.md\") return fromConnectorMdContent(content, repoName, filePath);\n  if (name === \"knowledge.yaml\") return fromKnowledgeYamlContent(content, repoName, filePath);\n  if (name.endsWith(\".prompt.md\")) return fromPromptMdContent(content, repoName, filePath);\n  if (name.endsWith(\".preset.yaml\")) return fromPresetYamlContent(content, repoName, filePath);\n  if (name.endsWith(\".flow.yaml\") || name.endsWith(\".flow.json\"))\n    return fromFlowYamlContent(content, repoName, filePath);\n  return null;\n}\n\n/** Filenames {@link scanDirectory} recognises as asset manifests. */\nexport function isManifestName(name: string): boolean {\n  return (\n    name === \"SKILL.md\" ||\n    name === \"AGENT.md\" ||\n    name === \"agent.yaml\" ||\n    name === \"CONTRACT.md\" ||\n    name === \"MCP.md\" ||\n    name === \"CONNECTOR.md\" ||\n    name === \"knowledge.yaml\" ||\n    name.endsWith(\".prompt.md\") ||\n    name.endsWith(\".preset.yaml\") ||\n    name.endsWith(\".flow.yaml\") ||\n    name.endsWith(\".flow.json\")\n  );\n}\n\n/** Per-asset values a `skaile.manifest.yaml` `assets[]` entry overrides on the scanned entry. */\ninterface ManifestAssetOverride {\n  publisher?: string;\n  version?: string;\n  dependencies: string[];\n}\n\n/**\n * Per-asset overrides declared in `<root>/skaile.manifest.yaml` `assets[]` (`publisher`,\n * `dependencies`), keyed `kind:name`. Empty when the manifest is absent, unreadable within\n * the deadline, or not valid YAML — a scan never fails on it.\n */\nasync function readManifestAssetOverrides(\n  root: string,\n  opTimeoutMs: number,\n): Promise<Record<string, ManifestAssetOverride>> {\n  const out: Record<string, ManifestAssetOverride> = {};\n  const file = join(root, \"skaile.manifest.yaml\");\n  const content = await tryWithFsDeadline(\n    `readFile ${file}`,\n    () => readFile(file, \"utf8\"),\n    null,\n    opTimeoutMs,\n  );\n  if (content === null) return out;\n  let doc: unknown;\n  try {\n    doc = parse(content);\n  } catch {\n    return out;\n  }\n  const assets = (doc as { assets?: unknown } | null)?.assets;\n  if (!Array.isArray(assets)) return out;\n  for (const a of assets) {\n    const { kind, name, publisher, dependencies, version } = (a ?? {}) as Record<string, unknown>;\n    if (typeof kind !== \"string\" || typeof name !== \"string\") continue;\n    const override: ManifestAssetOverride = {\n      dependencies: Array.isArray(dependencies)\n        ? dependencies.filter((d): d is string => typeof d === \"string\" && d.trim().length > 0)\n        : [],\n    };\n    const bare = typeof publisher === \"string\" ? publisher.trim().replace(/^@/, \"\") : \"\";\n    if (bare) override.publisher = bare;\n    if (typeof version === \"string\" && version.trim() !== \"\") override.version = version.trim();\n    if (override.publisher || override.version || override.dependencies.length > 0)\n      out[`${kind}:${name}`] = override;\n  }\n  return out;\n}\n\n/**\n * Fold a manifest entry's `dependencies` into `entry.requires`: the manifest field is the\n * author-declared requirement list of the entry (same meaning as `requires`), so every\n * consumer of the scanned entry (`add`, `install`, `info`, `check`, `doctor`) sees it.\n * A requirement the file already declares is not repeated, by {@link requirementKey}\n * identity: the file's bare `report-table` and the manifest's `skill:@pub/report-table`\n * are one requirement when `pub` is the entry's own publisher.\n */\nfunction mergeManifestDependencies(entry: CatalogEntry, dependencies: readonly string[]): void {\n  entry.requires = dedupeRequirements(\n    [...entry.requires, ...dependencies.map((raw) => parseDep(raw))],\n    entry.publisher,\n  );\n}\n\n/**\n * Walk `root` recursively and return a `CatalogEntry` for every recognized asset manifest found.\n *\n * Recognized filenames: `SKILL.md`, `AGENT.md`, `agent.yaml`, `CONTRACT.md`, `MCP.md`,\n * `CONNECTOR.md`, `knowledge.yaml`, `*.prompt.md`, `*.preset.yaml`, `*.flow.yaml`, `*.flow.json`.\n *\n * When two entries share the same `kind:name` key, the one with the alphabetically\n * later source path wins (consistent with catalog precedence rules), unless\n * {@link ScanOptions.keepDuplicates} asks for every copy.\n *\n * **Async and bounded since #454.** `root` can resolve onto the rclone FUSE mount\n * (a `sources[].path` under `/skaile/workspace`), and the walk follows symlinks, so\n * even an off-mount root can descend into one. Every `opendir`/`stat`/`readFile`\n * is deadline-bounded and the walk is capped by depth, entry count, a wall-clock\n * budget, and an ancestor-inode set — see {@link walkDir}. Hitting any bound reports\n * a {@link WalkTruncation} through {@link WalkOptions.onTruncate} (a `warn` by\n * default); the returned array is then a **partial** scan, never a complete one.\n *\n * A manifest that cannot be read within its deadline is skipped rather than\n * failing the whole scan — one unreachable file must not cost the whole catalog.\n *\n * **Per-asset publisher.** When `root` holds a `skaile.manifest.yaml` whose `assets[]`\n * entry names a `publisher` for a scanned `kind`/`name`, that publisher replaces\n * `repoName` on the produced entry — the same identity the library index and\n * `library create --publisher` write, so `kind:@<publisher>/<name>` resolves.\n *\n * **Per-asset dependencies.** The same entry's `dependencies` (`kind:@<publisher>/name[#pin]`)\n * are appended to the produced entry's `requires`, next to the file's own `requires`.\n *\n * @param root - Absolute path to the directory tree to scan\n * @param repoName - Publisher attached to every produced entry without a per-asset override\n * @param options - Walk bounds and truncation sink; see {@link WalkOptions}\n * @returns Array of deduplicated `CatalogEntry` objects, one per manifest file\n * @docLink packages/core/concepts#scan-directory\n */\nexport async function scanDirectory(\n  root: string,\n  repoName: string,\n  options: ScanOptions,\n): Promise<CatalogEntry[]> {\n  const entries = new Map<string, CatalogEntry>();\n  const copies: CatalogEntry[] = [];\n  const onTruncate = options.onTruncate ?? ((info: WalkTruncation) => warnTruncation(info, root));\n  const reported = new Set<WalkTruncation[\"reason\"]>();\n  const relay = (info: WalkTruncation) => {\n    reported.add(info.reason);\n    onTruncate(info);\n  };\n  const opTimeoutMs = options.opTimeoutMs ?? fsDeadlineMs();\n  const manifestOverrides = await readManifestAssetOverrides(root, opTimeoutMs);\n\n  function add(e: CatalogEntry): void {\n    // Boundary normalization: a third-party source we don't control may name an\n    // asset with a human-styled identity (\"Complex App\"). Slugify it to a\n    // canonical name so the ref it produces parses, preserving the original on\n    // `metadata.displayName` for display. No-op for already-canonical names.\n    normalizeEntryName(e);\n    const key = `${e.kind}:${e.name}`;\n    const override = manifestOverrides[key];\n    if (override?.publisher) e.publisher = override.publisher;\n    // A file that declares no version (AGENT.md, agent.yaml) has the manifest entry's, so every\n    // library holding it agrees on the version.\n    if (!e.version && override?.version) e.version = override.version;\n    if (override) mergeManifestDependencies(e, override.dependencies);\n    if (options.keepDuplicates) {\n      copies.push(e);\n      return;\n    }\n    const existing = entries.get(key);\n    if (!existing) {\n      entries.set(key, e);\n      return;\n    }\n    // Among duplicates, alphabetically later source path wins\n    if (e.source > existing.source) entries.set(key, e);\n  }\n\n  for await (const { path: filePath, name } of walkDir(root, {\n    ...options,\n    opTimeoutMs,\n    onTruncate: relay,\n  })) {\n    if (!isManifestName(name)) continue;\n    const content = await tryWithFsDeadline(\n      `readFile ${filePath}`,\n      () => readFile(filePath, \"utf8\"),\n      null,\n      opTimeoutMs,\n    );\n    if (content === null) {\n      // Unreadable or past its deadline — the catalog loses this asset, not the\n      // whole scan. Reported once so a wedged mount is visible in the logs.\n      if (!reported.has(\"unreadable\")) relay({ reason: \"unreadable\", path: filePath });\n      continue;\n    }\n    try {\n      const entry = entryFromManifest(name, content, filePath, repoName, options.knownKinds);\n      if (entry) add(entry);\n    } catch (err) {\n      if (err instanceof ManifestKindError) {\n        (options.onDiagnostic ?? warnDiagnostic)(manifestKindDiagnostic(err));\n      }\n    }\n  }\n\n  return options.keepDuplicates ? copies : [...entries.values()];\n}\n"]}