@skaile/workspaces 5.10.0 → 5.12.0

package/dist/chunk-Y34MSWEZ.js.map

@@ -1 +0,0 @@
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* Deadline guards for filesystem work that can land on a network mount.\n *\n * Inside the agent container `/skaile/workspace` **is** an rclone FUSE mount\n * (SharePoint / OneDrive / WebDAV). When the host rclone process wedges, a\n * filesystem call against that path parks in an uninterruptible kernel wait.\n * A **synchronous** call there stops the entire single-threaded event loop —\n * the whole `skaile serve` process stops serving, and the platform reads the\n * session as dead or idle. A hang is not an error, so `try/catch` never fires.\n *\n * Two rules follow, and both matter:\n *\n * 1. **Never touch a mount synchronously.** Async `node:fs/promises` keeps the\n *    loop free, so a wedged mount degrades to one stuck request instead of a\n *    dead session. This is the actual fix.\n * 2. **Bound the wait.** {@link withFsDeadline} converts an unbounded wait into\n *    a bounded failure so the requester gets an error rather than nothing.\n *\n * `withFsDeadline` does **not** cancel the underlying operation — Node cannot\n * abort a syscall already in the kernel. The losing promise stays pending until\n * the mount recovers or the process exits. That is acceptable precisely because\n * rule 1 holds: a pending promise costs one handle, not the event loop.\n *\n * Modelled on `connectors/src/fleet-utils.ts` (`ensureFleetMounted`), which\n * already does async-stat-with-deadline correctly.\n */\n\n/** Default deadline for a single filesystem operation on a possibly-networked mount. */\nexport const DEFAULT_FS_DEADLINE_MS = 15_000;\n\n/**\n * Env override for {@link DEFAULT_FS_DEADLINE_MS}, in milliseconds.\n *\n * A cloud-backed mount over a slow link can legitimately need longer than the\n * default; operators raise this rather than patching call sites.\n */\nexport const FS_DEADLINE_ENV_VAR = \"SKAILE_FS_DEADLINE_MS\";\n\n/**\n * Thrown when a filesystem operation misses its deadline.\n *\n * Distinct from a plain `Error` so callers can tell \"the mount is wedged\" apart\n * from \"the file does not exist\" and surface the right message to the frontend.\n */\nexport class FsDeadlineError extends Error {\n  readonly timeoutMs: number;\n  readonly operation: string;\n\n  constructor(operation: string, timeoutMs: number) {\n    super(\n      `filesystem operation \"${operation}\" exceeded ${timeoutMs}ms — the mount may be unresponsive`,\n    );\n    this.name = \"FsDeadlineError\";\n    this.operation = operation;\n    this.timeoutMs = timeoutMs;\n  }\n}\n\n/**\n * Resolve the effective filesystem deadline.\n *\n * Reads {@link FS_DEADLINE_ENV_VAR} on every call rather than caching it: the\n * runner mutates `process.env` while wiring a session, so a module-load-time\n * snapshot would pin the value set before configuration ran.\n *\n * @param fallback - Deadline to use when the env var is absent or unusable.\n * @returns The deadline in milliseconds.\n */\nexport function fsDeadlineMs(fallback: number = DEFAULT_FS_DEADLINE_MS): number {\n  const raw = process.env[FS_DEADLINE_ENV_VAR];\n  if (raw === undefined) return fallback;\n  const parsed = Number.parseInt(raw, 10);\n  // A non-positive or non-numeric override would disable the guard entirely,\n  // which is exactly the failure mode this module exists to prevent.\n  return Number.isFinite(parsed) && parsed > 0 ? parsed : fallback;\n}\n\n/**\n * Run an async filesystem operation under a deadline.\n *\n * @param operation - Short label used in the timeout message (e.g. `\"readdir /skaile/workspace\"`).\n * @param fn - Thunk performing the operation. Called immediately.\n * @param timeoutMs - Deadline override; defaults to {@link fsDeadlineMs}.\n * @returns The operation's result.\n * @throws {FsDeadlineError} when the deadline elapses first.\n * @throws Whatever `fn` rejects with, unchanged, when it loses no race.\n * @docLink packages/core/api-reference#with-fs-deadline\n */\nexport async function withFsDeadline<T>(\n  operation: string,\n  fn: () => Promise<T>,\n  timeoutMs: number = fsDeadlineMs(),\n): Promise<T> {\n  let timer: ReturnType<typeof setTimeout> | undefined;\n  try {\n    return await Promise.race([\n      fn(),\n      new Promise<never>((_resolve, reject) => {\n        timer = setTimeout(() => reject(new FsDeadlineError(operation, timeoutMs)), timeoutMs);\n        // Never hold the process open on the guard alone — without unref a\n        // pending deadline would keep `skaile serve` alive after shutdown.\n        timer.unref?.();\n      }),\n    ]);\n  } finally {\n    if (timer !== undefined) clearTimeout(timer);\n  }\n}\n\n/**\n * Run an async filesystem operation under a deadline, mapping every failure to\n * `fallback`.\n *\n * For best-effort probes that previously used `existsSync` — a missing file, an\n * unreadable file, and a wedged mount are all \"nothing usable here\", and the\n * caller has no better move than to continue without it.\n *\n * @param operation - Short label used in the timeout message.\n * @param fn - Thunk performing the operation.\n * @param fallback - Value returned when `fn` rejects or the deadline elapses.\n * @param timeoutMs - Deadline override; defaults to {@link fsDeadlineMs}.\n */\nexport async function tryWithFsDeadline<T>(\n  operation: string,\n  fn: () => Promise<T>,\n  fallback: T,\n  timeoutMs: number = fsDeadlineMs(),\n): Promise<T> {\n  try {\n    return await withFsDeadline(operation, fn, timeoutMs);\n  } catch {\n    return fallback;\n  }\n}\n","/**\n * Requirement identity — one key for \"asset X requires asset Y\", wherever the\n * declaration comes from (a SKILL.md `metadata.requires` entry, a manifest\n * `dependencies:` entry, a lock-time edge).\n *\n * A requirement is identified by `publisher/kind:name`. A declaration that names\n * no publisher means \"the declaring asset's own publisher\", so `report-table` on a\n * `@skaile-ai` asset and `skill:@skaile-ai/report-table` are the same requirement.\n * Every command that lists, dedupes or compares requirements goes through here.\n */\n\nimport { type Dependency, depToStr, parseDep } from \"./models.js\";\n\n/**\n * `publisher/kind:name` identity of a requirement. A dependency that names no\n * publisher takes `fallbackPublisher` (the declaring asset's); without either, the\n * key is the unqualified `kind:name`.\n */\nexport function requirementKey(dep: Dependency, fallbackPublisher?: string): string {\n  const publisher = dep.publisher ?? fallbackPublisher ?? \"\";\n  return publisher ? `${publisher}/${dep.kind}:${dep.name}` : `${dep.kind}:${dep.name}`;\n}\n\n/**\n * Each requirement once, in first-seen order. Two declarations of the same\n * {@link requirementKey} collapse into one; the surviving entry carries the\n * publisher and the pin of whichever declaration named them.\n */\nexport function dedupeRequirements(\n  deps: readonly Dependency[],\n  fallbackPublisher?: string,\n): Dependency[] {\n  const out: Dependency[] = [];\n  const at = new Map<string, number>();\n  for (const dep of deps) {\n    const key = requirementKey(dep, fallbackPublisher);\n    const i = at.get(key);\n    if (i === undefined) {\n      at.set(key, out.length);\n      out.push({ ...dep });\n      continue;\n    }\n    const kept = out[i] as Dependency;\n    if (!kept.publisher && dep.publisher) kept.publisher = dep.publisher;\n    if (!kept.pin && dep.pin) kept.pin = dep.pin;\n  }\n  return out;\n}\n\n/** {@link dedupeRequirements} for requirement strings (`kind:name[#pin]`, `kind:@pub/name[#pin]`). */\nexport function dedupeRequirementRefs(\n  refs: readonly string[],\n  fallbackPublisher?: string,\n): string[] {\n  const parse = (ref: string): Dependency => {\n    const dep = parseDep(ref);\n    // The scoped form carries its own pin; a bare `kind:name#pin` keeps it in the name.\n    const hash = dep.name.indexOf(\"#\");\n    if (hash === -1) return dep;\n    const pin = dep.name.slice(hash + 1).trim();\n    dep.name = dep.name.slice(0, hash);\n    if (pin && !dep.pin) dep.pin = pin;\n    return dep;\n  };\n  return dedupeRequirements(refs.map(parse), fallbackPublisher).map(depToStr);\n}\n","/**\n * Manifest parsing — reads SKILL.md, AGENT.md, agent.yaml, CONTRACT.md,\n * CONNECTOR.md, *.prompt.md, *.flow.yaml, *.preset.yaml files and\n * produces CatalogEntry objects.\n * Used by @skaile/asset-manager for on-demand repo scanning.\n *\n * **All filesystem access here is async and bounded** (issue #454). A repo root\n * can resolve onto the rclone FUSE mount at `/skaile/workspace` — either\n * directly (a `sources[].path` pointing into the workspace) or indirectly, since\n * the walk follows symlinks and an off-mount tree can link into one. A\n * synchronous `readdirSync`/`statSync`/`readFileSync` there parks the whole\n * `skaile serve` event loop in an uninterruptible kernel wait, and a hang is not\n * an error so `try/catch` never fires. Every call goes through\n * {@link withFsDeadline}/{@link tryWithFsDeadline}, and the walk itself is\n * bounded by depth, entry count, a wall-clock budget, and an ancestor-inode set.\n */\n\nimport type { Dirent } from \"node:fs\";\nimport { opendir, readFile, stat } from \"node:fs/promises\";\nimport { basename, dirname, join } from \"node:path\";\nimport { parse } from \"yaml\";\nimport { fsDeadlineMs, tryWithFsDeadline, withFsDeadline } from \"./fs-deadline.js\";\nimport { createLogger } from \"./logging/create-logger.js\";\nimport type { AssetKind, CatalogEntry, Dependency } from \"./models.js\";\nimport { isValidAssetName, parseDep, slugifyAssetName } from \"./models.js\";\nimport { dedupeRequirements } from \"./requirements.js\";\nimport type { Diagnostic } from \"./workspace-config.js\";\n\n// ── Bounded manifest I/O ──────────────────────────────────────────────────────\n\n/**\n * Read one manifest file under a deadline.\n *\n * @param filePath - Absolute path to the manifest.\n * @param timeoutMs - Per-operation deadline; defaults to {@link fsDeadlineMs}.\n * @throws {import(\"./fs-deadline.js\").FsDeadlineError} when the read outlives the deadline.\n */\nfunction readManifestFile(filePath: string, timeoutMs?: number): Promise<string> {\n  return withFsDeadline(`readFile ${filePath}`, () => readFile(filePath, \"utf8\"), timeoutMs);\n}\n\n/**\n * Read one manifest file under a deadline, degrading an unreadable/slow file to\n * an empty document. Mirrors the pre-#454 `try { readFileSync } catch {}` shape\n * of the YAML parsers: a file we cannot read yields `{}` metadata rather than\n * aborting the caller.\n */\nfunction readManifestFileOrEmpty(filePath: string, timeoutMs?: number): Promise<string> {\n  return tryWithFsDeadline(`readFile ${filePath}`, () => readFile(filePath, \"utf8\"), \"\", timeoutMs);\n}\n\n// ── Frontmatter helpers ───────────────────────────────────────────────────────\n\n/**\n * Result of parsing YAML frontmatter from a markdown file.\n * @docLink packages/core/concepts#frontmatter-result\n */\nexport interface FrontmatterResult {\n  /** Parsed YAML data. Empty object if no frontmatter block is present. */\n  data: Record<string, unknown>;\n  /** Markdown body below the frontmatter block (trimmed). */\n  body: string;\n}\n\n/**\n * Parse YAML frontmatter from a markdown file (`---` delimited).\n * Returns `{ data: {}, body: text }` when no frontmatter block is present.\n *\n * @param text - Raw file contents\n * @returns Parsed frontmatter data and the remaining body text\n * @docLink packages/core/concepts#parse-frontmatter\n */\nexport function parseFrontmatter(text: string): FrontmatterResult {\n  const m = text.match(/^---\\s*\\n([\\s\\S]*?)\\n---/);\n  if (!m) return { data: {}, body: text.trim() };\n  try {\n    const data = (parse(m[1]!) as Record<string, unknown>) ?? {};\n    const body = text.slice(m[0].length).trim();\n    return { data, body };\n  } catch {\n    return { data: {}, body: text.trim() };\n  }\n}\n\n/** Extract version from frontmatter, checking both top-level and metadata.version. */\nfunction extractVersion(meta: Record<string, unknown>): string {\n  return String(\n    meta.version ?? (meta.metadata as Record<string, unknown> | undefined)?.version ?? \"\",\n  );\n}\n\n/**\n * Parse the `requires:` field from manifest frontmatter into typed `Dependency` objects.\n * Accepts a comma-separated string or an array of `\"kind:name\"` strings. Reads from either\n * the root or `metadata.requires` (matching `extractVersion`'s dual-location behavior) so\n * skill authors can follow the agentskills.io convention of placing skaile extensions under\n * `metadata:` while remaining backward-compatible with root-level declarations.\n *\n * @param meta - Parsed frontmatter data object\n * @returns Array of `Dependency` objects (empty when `requires` is absent)\n * @docLink packages/core/concepts#parse-requires\n */\nexport function parseRequires(meta: Record<string, unknown>): Dependency[] {\n  const raw = meta.requires ?? (meta.metadata as Record<string, unknown> | undefined)?.requires;\n  if (!raw) return [];\n  const list =\n    typeof raw === \"string\"\n      ? raw.split(\",\").map((s) => s.trim())\n      : Array.isArray(raw)\n        ? (raw as string[])\n        : [];\n  return list.filter(Boolean).map(parseDep);\n}\n\n// ── agent.yaml composes → requires ─────────────────────────────────────────────\n\n/**\n * Collect the catalog refs of an `agent.yaml` `composes[]` list as requires so\n * `skaile install` pulls them automatically. Local paths (`.`/`/`) and\n * `library://` instance refs are skipped — not catalog assets. A ref without a\n * `kind:` prefix takes the item's `kind`; the publisher scope, `@version` and\n * `#pin` are stripped so only `kind:name` is tracked.\n */\nfunction collectComposeRefs(raw: unknown, out: Dependency[]): void {\n  if (!Array.isArray(raw)) return;\n  for (const item of raw) {\n    if (typeof item !== \"object\" || item === null) continue;\n    const { kind: itemKind, ref } = item as Record<string, unknown>;\n    if (typeof ref !== \"string\" || !ref) continue;\n    if (ref.startsWith(\".\") || ref.startsWith(\"/\") || ref.includes(\"://\")) continue;\n    if (typeof itemKind !== \"string\" || !itemKind) continue;\n    const normalized = ref.includes(\":\") ? ref : `${itemKind}:${ref}`;\n    const colonIdx = normalized.indexOf(\":\");\n    const kind = normalized.slice(0, colonIdx).trim();\n    let rest = normalized.slice(colonIdx + 1).trim();\n    const hashIdx = rest.indexOf(\"#\");\n    if (hashIdx !== -1) rest = rest.slice(0, hashIdx).trim();\n    if (rest.startsWith(\"@\")) {\n      // Scoped form @publisher/name → name is the segment after the slash.\n      const slashIdx = rest.indexOf(\"/\");\n      rest = slashIdx !== -1 ? rest.slice(slashIdx + 1).trim() : \"\";\n    }\n    // A trailing `@<version>` range (`name@^1`) is not part of the name.\n    const atIdx = rest.indexOf(\"@\");\n    const name = atIdx !== -1 ? rest.slice(0, atIdx).trim() : rest;\n    if (name) out.push({ kind, name });\n  }\n}\n\n// ── Manifest parsers ──────────────────────────────────────────────────────────\n\n/**\n * Thrown when a `SKILL.md`-style manifest declares a `type:` that is not a\n * registered asset kind. The kind registry is the only authority on kinds, so an\n * unregistered `type:` is reported (see {@link manifestKindDiagnostic}) instead\n * of being silently catalogued as a skill.\n */\nexport class ManifestKindError extends Error {\n  constructor(\n    readonly filePath: string,\n    readonly kind: string,\n  ) {\n    super(`${filePath}: unknown asset kind \"${kind}\" in frontmatter \\`type:\\``);\n    this.name = \"ManifestKindError\";\n  }\n}\n\n/** Convert a {@link ManifestKindError} into the `unknown_asset_kind` error diagnostic. */\nexport function manifestKindDiagnostic(err: ManifestKindError): Diagnostic {\n  return {\n    code: \"unknown_asset_kind\",\n    severity: \"error\",\n    message: `${err.filePath}: asset kind \"${err.kind}\" is not registered`,\n    path: err.filePath,\n  };\n}\n\n/**\n * Parse a `SKILL.md` file into a `CatalogEntry`.\n * The `kind` field defaults to `\"skill\"` but can be overridden via the `type:`\n * frontmatter key to any registered kind. Falls back to the parent directory name\n * when `name:` is absent.\n *\n * Async since #454 — the file may live on the FUSE workspace mount.\n *\n * @param filePath - Absolute path to the `SKILL.md` file\n * @param repoName - Repository name used as the `repository` field of the entry\n * @param knownKinds - Registered asset kinds (`registry.getAllKinds()`); a `type:` outside it throws\n * @returns Populated `CatalogEntry` with kind, name, description, version, and requires\n * @throws {ManifestKindError} when `type:` names an unregistered kind\n * @docLink packages/core/concepts#from-skill-md\n */\nexport async function fromSkillMd(\n  filePath: string,\n  repoName: string,\n  knownKinds: ReadonlySet<string>,\n): Promise<CatalogEntry> {\n  return fromSkillMdContent(await readManifestFile(filePath), repoName, filePath, knownKinds);\n}\n\n/** Pure {@link fromSkillMd} core over already-read content (no I/O). */\nfunction fromSkillMdContent(\n  content: string,\n  repoName: string,\n  filePath: string,\n  knownKinds: ReadonlySet<string>,\n): CatalogEntry {\n  const { data: meta } = parseFrontmatter(content);\n  // An absent `type:` is the SKILL.md default; an explicit one must be registered.\n  const kind = meta.type === undefined ? \"skill\" : String(meta.type);\n  if (meta.type !== undefined && !knownKinds.has(kind)) throw new ManifestKindError(filePath, kind);\n  return {\n    name: String(meta.name ?? basename(dirname(filePath))),\n    kind,\n    description: String(meta.description ?? \"\"),\n    source: filePath,\n    publisher: repoName,\n    version: extractVersion(meta),\n    requires: parseRequires(meta),\n    dependencies: [],\n  };\n}\n\n/**\n * Parse an `AGENT.md` file into a `CatalogEntry` with `kind: \"agent\"`.\n * Falls back to the parent directory name when `name:` is absent.\n *\n * Async since #454 — the file may live on the FUSE workspace mount.\n *\n * @param filePath - Absolute path to the `AGENT.md` file\n * @param repoName - Repository name used as the `repository` field of the entry\n * @returns Populated `CatalogEntry` with kind `\"agent\"`\n * @docLink packages/core/concepts#from-agent-md\n */\nexport async function fromAgentMd(filePath: string, repoName: string): Promise<CatalogEntry> {\n  return fromAgentMdContent(await readManifestFile(filePath), repoName, filePath);\n}\n\n/** Pure {@link fromAgentMd} core over already-read content (no I/O). */\nfunction fromAgentMdContent(content: string, repoName: string, filePath: string): CatalogEntry {\n  const { data: meta } = parseFrontmatter(content);\n  return {\n    name: String(meta.name ?? basename(dirname(filePath))),\n    kind: \"agent\",\n    description: String(meta.description ?? \"\"),\n    source: filePath,\n    publisher: repoName,\n    version: extractVersion(meta),\n    requires: parseRequires(meta),\n    dependencies: [],\n  };\n}\n\n/**\n * Parse an `agent.yaml` file into a `CatalogEntry` with `kind: \"agent\"`.\n * `requires` lists the catalog refs of `composes[]` (local paths and `library://`\n * instances excluded). The deprecated 0.1 fields (`skills`, `requires`, `persona`,\n * …) are not read; `skaile validate` reports them.\n *\n * Async since #454 — the file may live on the FUSE workspace mount.\n *\n * @param filePath - Absolute path to the `agent.yaml` file\n * @param repoName - Repository name used as the `repository` field of the entry\n * @returns Populated `CatalogEntry` with kind `\"agent\"` and full dependency graph\n * @docLink packages/core/concepts#from-agent-yaml\n */\nexport async function fromAgentYaml(filePath: string, repoName: string): Promise<CatalogEntry> {\n  return fromAgentYamlContent(await readManifestFileOrEmpty(filePath), repoName, filePath);\n}\n\n/** Pure {@link fromAgentYaml} core over already-read content (no I/O). */\nfunction fromAgentYamlContent(content: string, repoName: string, filePath: string): CatalogEntry {\n  let meta: Record<string, unknown> = {};\n  try {\n    meta = (parse(content) as Record<string, unknown>) ?? {};\n  } catch {}\n\n  const requires: Dependency[] = [];\n  collectComposeRefs(meta.composes, requires);\n\n  return {\n    name: String(meta.name ?? basename(dirname(filePath))),\n    kind: \"agent\",\n    description: String(meta.description ?? \"\"),\n    source: filePath,\n    publisher: repoName,\n    version: String(meta.version ?? \"\"),\n    requires,\n    dependencies: [],\n  };\n}\n\n/**\n * Parse a `*.prompt.md` file into a `CatalogEntry` with `kind: \"prompt\"`.\n * The name defaults to the filename stem (without the `.prompt.md` suffix)\n * when no `name:` frontmatter key is present.\n *\n * Async since #454 — the file may live on the FUSE workspace mount.\n *\n * @param filePath - Absolute path to the `.prompt.md` file\n * @param repoName - Repository name used as the `repository` field of the entry\n * @returns Populated `CatalogEntry` with kind `\"prompt\"`\n * @docLink packages/core/concepts#from-prompt-md\n */\nexport async function fromPromptMd(filePath: string, repoName: string): Promise<CatalogEntry> {\n  return fromPromptMdContent(await readManifestFile(filePath), repoName, filePath);\n}\n\n/** Pure {@link fromPromptMd} core over already-read content (no I/O). */\nfunction fromPromptMdContent(content: string, repoName: string, filePath: string): CatalogEntry {\n  const { data: meta } = parseFrontmatter(content);\n  const name = String(meta.name ?? basename(filePath).replace(/\\.prompt\\.md$/, \"\"));\n  return {\n    name,\n    kind: \"prompt\",\n    description: String(meta.description ?? \"\"),\n    source: filePath,\n    publisher: repoName,\n    version: extractVersion(meta),\n    requires: parseRequires(meta),\n    dependencies: [],\n  };\n}\n\n/**\n * Parse a `*.flow.yaml` or `*.flow.json` file into a `CatalogEntry` with `kind: \"flow\"`.\n * The name resolves from `name:` or `id:` frontmatter, falling back to the filename stem.\n *\n * Async since #454 — the file may live on the FUSE workspace mount.\n *\n * @param filePath - Absolute path to the flow definition file\n * @param repoName - Repository name used as the `repository` field of the entry\n * @returns Populated `CatalogEntry` with kind `\"flow\"`\n * @docLink packages/core/concepts#from-flow-yaml\n */\nexport async function fromFlowYaml(filePath: string, repoName: string): Promise<CatalogEntry> {\n  return fromFlowYamlContent(await readManifestFileOrEmpty(filePath), repoName, filePath);\n}\n\n/** Pure {@link fromFlowYaml} core over already-read content (no I/O). */\nfunction fromFlowYamlContent(content: string, repoName: string, filePath: string): CatalogEntry {\n  let meta: Record<string, unknown> = {};\n  try {\n    meta = (parse(content) as Record<string, unknown>) ?? {};\n  } catch {}\n\n  const stem = basename(filePath)\n    .replace(/\\.flow\\.yaml$/, \"\")\n    .replace(/\\.flow\\.json$/, \"\");\n  return {\n    name: String(meta.name ?? meta.id ?? stem),\n    kind: \"flow\",\n    description: String(meta.description ?? \"\"),\n    source: filePath,\n    publisher: repoName,\n    version: String(meta.version ?? \"\"),\n    requires: parseRequires(meta),\n    dependencies: [],\n  };\n}\n\n/**\n * Split a preset's `items[]` into the asset refs a dependency expansion installs\n * and the instance items it cannot: `library://` instance refs, `#item` cross\n * references, items that prompt for `placeholders`, and `connector:`/`mcp:` items\n * with an `id` (those become `skaile.yaml` declarations through\n * `skaile preset apply`). Refs are kept verbatim — publisher/pin qualifiers\n * preserved, nested `preset:` refs included.\n *\n * @param items - The raw `items` value of a parsed preset manifest.\n * @returns Deduped asset refs plus the count of skipped instance items.\n * @docLink packages/core/concepts#preset-item-refs\n */\nexport function presetItemRefs(items: unknown): { refs: string[]; skipped: number } {\n  const refs = new Set<string>();\n  let skipped = 0;\n  if (!Array.isArray(items)) return { refs: [], skipped };\n  for (const raw of items) {\n    if (raw === null || typeof raw !== \"object\") continue;\n    const item = raw as Record<string, unknown>;\n    const ref = typeof item.ref === \"string\" ? item.ref.trim() : \"\";\n    if (!ref) continue;\n    const hasPlaceholders = Array.isArray(item.placeholders) && item.placeholders.length > 0;\n    const declaresInstance =\n      typeof item.id === \"string\" && (ref.startsWith(\"connector:\") || ref.startsWith(\"mcp:\"));\n    if (\n      ref.startsWith(\"library://\") ||\n      ref.startsWith(\"#\") ||\n      hasPlaceholders ||\n      declaresInstance\n    ) {\n      skipped++;\n      continue;\n    }\n    refs.add(ref);\n  }\n  return { refs: [...refs], skipped };\n}\n\n/**\n * Parse a `*.preset.yaml` file into a `CatalogEntry` with `kind: \"preset\"`.\n * `dependencies` carries the asset refs of its items (see {@link presetItemRefs}).\n *\n * Async since #454 — the file may live on the FUSE workspace mount.\n *\n * @param filePath - Absolute path to the preset YAML file\n * @param repoName - Repository name used as the `repository` field of the entry\n * @returns Populated `CatalogEntry` with kind `\"preset\"`\n * @docLink packages/core/concepts#from-preset-yaml\n */\nexport async function fromPresetYaml(filePath: string, repoName: string): Promise<CatalogEntry> {\n  return fromPresetYamlContent(await readManifestFileOrEmpty(filePath), repoName, filePath);\n}\n\n/** Pure {@link fromPresetYaml} core over already-read content (no I/O). */\nfunction fromPresetYamlContent(content: string, repoName: string, filePath: string): CatalogEntry {\n  let meta: Record<string, unknown> = {};\n  try {\n    meta = (parse(content) as Record<string, unknown>) ?? {};\n  } catch {}\n\n  const { refs, skipped } = presetItemRefs(meta.items);\n  return {\n    name: String(meta.name ?? basename(filePath).replace(/\\.preset\\.yaml$/, \"\")),\n    kind: \"preset\",\n    description: String(meta.description ?? \"\"),\n    source: filePath,\n    publisher: repoName,\n    version: String(meta.version ?? \"\"),\n    requires: [],\n    dependencies: refs,\n    ...(skipped > 0 ? { skippedItems: skipped } : {}),\n  };\n}\n\n/**\n * Extract an asset's raw transitive dependency ref strings from its manifest\n * file, kept verbatim (publisher/pin qualifiers preserved, comments dropped by\n * the parser): a `*.preset.yaml`'s asset items (see {@link presetItemRefs}) or the\n * union of a `*.flow.{yaml,json}`'s top-level `requires` / `dependencies`. Unlike\n * {@link parseRequires}, refs are returned as-is — the resolver needs the full\n * `kind:@<publisher>/name[#pin]` form, not a publisher-stripped {@link Dependency}.\n *\n * Async since #454 — the file may live on the FUSE workspace mount.\n *\n * @param filePath - Absolute path to a `.preset.yaml` or `.flow.{yaml,json}`.\n * @returns Deduped `refs` (`[]` on parse failure or no deps) and the count of\n *   preset instance items that are not expanded.\n * @docLink packages/core/concepts#asset-dep-refs\n */\nexport async function assetDepRefs(filePath: string): Promise<{ refs: string[]; skipped: number }> {\n  return assetDepRefsFromContent(await readManifestFileOrEmpty(filePath), filePath);\n}\n\n/** Pure {@link assetDepRefs} core over already-read content (no I/O). */\nfunction assetDepRefsFromContent(\n  content: string,\n  filePath: string,\n): { refs: string[]; skipped: number } {\n  // YAML is a JSON superset, so `parse` reads `.flow.json` too.\n  let meta: Record<string, unknown> = {};\n  try {\n    meta = (parse(content) as Record<string, unknown>) ?? {};\n  } catch {\n    return { refs: [], skipped: 0 };\n  }\n  if (filePath.endsWith(\".preset.yaml\")) return presetItemRefs(meta.items);\n  const out: string[] = [];\n  const collect = (v: unknown) => {\n    if (Array.isArray(v))\n      for (const x of v) if (typeof x === \"string\" && x.trim()) out.push(x.trim());\n  };\n  collect(meta.requires);\n  collect((meta.metadata as Record<string, unknown> | undefined)?.requires);\n  collect(meta.dependencies);\n  return { refs: [...new Set(out)], skipped: 0 };\n}\n\n/**\n * Parse a `CONTRACT.md` file into a `CatalogEntry` with `kind: \"contract\"`.\n * Falls back to the parent directory name when `name:` is absent.\n *\n * Async since #454 — the file may live on the FUSE workspace mount.\n *\n * @param filePath - Absolute path to the `CONTRACT.md` file\n * @param repoName - Repository name used as the `repository` field of the entry\n * @returns Populated `CatalogEntry` with kind `\"contract\"`\n * @docLink packages/core/concepts#from-contract-md\n */\nexport async function fromContractMd(filePath: string, repoName: string): Promise<CatalogEntry> {\n  return fromContractMdContent(await readManifestFile(filePath), repoName, filePath);\n}\n\n/** Pure {@link fromContractMd} core over already-read content (no I/O). */\nfunction fromContractMdContent(content: string, repoName: string, filePath: string): CatalogEntry {\n  const { data: meta } = parseFrontmatter(content);\n  return {\n    name: String(meta.name ?? basename(dirname(filePath))),\n    kind: \"contract\",\n    description: String(meta.description ?? \"\"),\n    source: filePath,\n    publisher: repoName,\n    version: extractVersion(meta),\n    requires: parseRequires(meta),\n    dependencies: [],\n  };\n}\n\n/**\n * Parse an `MCP.md` file into a `CatalogEntry` with `kind: \"mcp-server\"`.\n * Falls back to the parent directory name when `name:` is absent.\n *\n * Frontmatter fields (catalog identity):\n *   - `name`        — server name (default: parent dir name)\n *   - `description` — short description\n *   - `version`     — semver\n *   - `keywords`    — array of discovery tags\n *\n * Frontmatter fields (runtime defaults, stored in `metadata`):\n *   - `transport`   — \"stdio\" | \"sse\" | \"http\" (default: \"stdio\")\n *   - `command`     — command to execute (stdio)\n *   - `args`        — command arguments (stdio)\n *   - `env`         — environment variables (stdio)\n *   - `url`         — server URL (sse/http)\n *   - `headers`     — HTTP headers (sse/http)\n *\n * When `mcp:name` appears in `skaile.yaml` `dependencies`, the runner reads\n * these defaults from `metadata` to build a `McpServerDeclaration` without\n * requiring verbose inline config.\n *\n * Async since #454 — the file may live on the FUSE workspace mount.\n *\n * @param filePath - Absolute path to the `MCP.md` file\n * @param repoName - Repository name used as the `repository` field of the entry\n * @returns Populated `CatalogEntry` with kind `\"mcp-server\"`\n * @docLink packages/core/concepts#from-mcp-server-md\n */\nexport async function fromMcpServerMd(filePath: string, repoName: string): Promise<CatalogEntry> {\n  return fromMcpServerMdContent(await readManifestFile(filePath), repoName, filePath);\n}\n\n/**\n * Parse pre-read MCP.md content into a `CatalogEntry`.\n * Callers that already hold the file content (e.g. to avoid a second read) use\n * this directly; `fromMcpServerMd` is a thin wrapper that reads then delegates here.\n *\n * @param content  - UTF-8 content of the `MCP.md` file\n * @param repoName - Repository name used as the `publisher` field of the entry\n * @param filePath - Absolute path (used as `source` and for name fallback)\n * @returns Populated `CatalogEntry` with kind `\"mcp-server\"`\n */\nexport function fromMcpServerMdContent(\n  content: string,\n  repoName: string,\n  filePath: string,\n): CatalogEntry {\n  const { data: meta } = parseFrontmatter(content);\n\n  // Extract runtime defaults into metadata\n  const metadata: Record<string, unknown> = {};\n  if (meta.transport) metadata.transport = String(meta.transport);\n  if (meta.command) metadata.command = String(meta.command);\n  if (Array.isArray(meta.args)) metadata.args = meta.args.map(String);\n  if (meta.env && typeof meta.env === \"object\" && !Array.isArray(meta.env)) {\n    metadata.env = meta.env as Record<string, string>;\n  }\n  if (meta.url) metadata.url = String(meta.url);\n  if (typeof meta.ca === \"string\") metadata.ca = meta.ca;\n  if (meta.headers && typeof meta.headers === \"object\" && !Array.isArray(meta.headers)) {\n    metadata.headers = meta.headers as Record<string, string>;\n  }\n  if (meta.recipe && typeof meta.recipe === \"object\" && !Array.isArray(meta.recipe)) {\n    metadata.recipe = meta.recipe;\n  }\n\n  return {\n    name: String(meta.name ?? basename(dirname(filePath))),\n    kind: \"mcp-server\",\n    description: String(meta.description ?? \"\"),\n    source: filePath,\n    publisher: repoName,\n    version: extractVersion(meta),\n    requires: parseRequires(meta),\n    dependencies: [],\n    metadata: Object.keys(metadata).length > 0 ? metadata : undefined,\n  };\n}\n\n/**\n * Parse a `knowledge.yaml` file into a `CatalogEntry` with `kind: \"knowledge\"`.\n * Falls back to the parent directory name when `name:` is absent.\n *\n * Async since #454 — the file may live on the FUSE workspace mount.\n *\n * @param filePath - Absolute path to the `knowledge.yaml` file\n * @param repoName - Repository name used as the `repository` field of the entry\n * @returns Populated `CatalogEntry` with kind `\"knowledge\"`\n * @docLink packages/core/concepts#from-knowledge-yaml\n */\nexport async function fromKnowledgeYaml(filePath: string, repoName: string): Promise<CatalogEntry> {\n  return fromKnowledgeYamlContent(await readManifestFileOrEmpty(filePath), repoName, filePath);\n}\n\n/** Pure {@link fromKnowledgeYaml} core over already-read content (no I/O). */\nfunction fromKnowledgeYamlContent(\n  content: string,\n  repoName: string,\n  filePath: string,\n): CatalogEntry {\n  let meta: Record<string, unknown> = {};\n  try {\n    meta = (parse(content) as Record<string, unknown>) ?? {};\n  } catch {}\n  return {\n    name: String(meta.name ?? basename(dirname(filePath))),\n    kind: \"knowledge\",\n    description: String(meta.description ?? \"\"),\n    source: filePath,\n    publisher: repoName,\n    version: String(meta.version ?? \"\"),\n    requires: parseRequires(meta),\n    dependencies: [],\n  };\n}\n\n/**\n * Parse a `CONNECTOR.md` file into a `CatalogEntry` with `kind: \"connector\"`.\n * Falls back to the parent directory name when `name:` is absent.\n *\n * Frontmatter fields (catalog identity):\n *   - `name`        — connector name (default: parent dir name)\n *   - `description` — short description\n *   - `version`     — semver\n *\n * Frontmatter fields (runtime defaults, stored in `metadata`):\n *   - `entry`        — adapter entry point (default: \"./adapter.ts\")\n *   - `npm_deps`     — npm dependencies required by the adapter\n *   - `fields`       — configuration fields the adapter expects\n *   - `health_check` — whether to run a health check on connect\n *\n * The markdown body (below the frontmatter) is stored in `metadata.body`\n * so the runner can inject the connector's skill description into the\n * system prompt when `expose_as_skill` is enabled.\n *\n * Async since #454 — the file may live on the FUSE workspace mount.\n *\n * @param filePath - Absolute path to the `CONNECTOR.md` file\n * @param repoName - Repository name used as the `repository` field of the entry\n * @returns Populated `CatalogEntry` with kind `\"connector\"`\n * @docLink packages/core/concepts#from-connector-md\n */\nexport async function fromConnectorMd(filePath: string, repoName: string): Promise<CatalogEntry> {\n  return fromConnectorMdContent(await readManifestFile(filePath), repoName, filePath);\n}\n\n/** Pure {@link fromConnectorMd} core over already-read content (no I/O). */\nfunction fromConnectorMdContent(content: string, repoName: string, filePath: string): CatalogEntry {\n  const { data: meta, body } = parseFrontmatter(content);\n  const name = String(meta.name ?? basename(dirname(filePath)));\n  return {\n    name,\n    kind: \"connector\" as AssetKind,\n    description: String(meta.description ?? \"\"),\n    source: filePath,\n    publisher: repoName,\n    version: extractVersion(meta),\n    requires: parseRequires(meta),\n    dependencies: [],\n    metadata: {\n      entry: meta.entry ?? \"./adapter.ts\",\n      npm_deps: meta.npm_deps ?? {},\n      fields: meta.fields ?? [],\n      health_check: meta.health_check ?? null,\n      body,\n    },\n  };\n}\n\n// ── Recursive walker ──────────────────────────────────────────────────────────\n\ninterface WalkEntry {\n  path: string;\n  name: string;\n}\n\n/** Default maximum directory nesting the walk descends into. */\nexport const DEFAULT_WALK_MAX_DEPTH = 32;\n\n/** Default maximum number of directory entries a single walk may examine. */\nexport const DEFAULT_WALK_MAX_ENTRIES = 50_000;\n\n/** Default wall-clock budget for one whole walk / scan pass, in milliseconds. */\nexport const DEFAULT_WALK_BUDGET_MS = 60_000;\n\n/** Env override for {@link DEFAULT_WALK_MAX_DEPTH}. */\nexport const WALK_MAX_DEPTH_ENV_VAR = \"SKAILE_SCAN_MAX_DEPTH\";\n\n/** Env override for {@link DEFAULT_WALK_MAX_ENTRIES}. */\nexport const WALK_MAX_ENTRIES_ENV_VAR = \"SKAILE_SCAN_MAX_ENTRIES\";\n\n/** Env override for {@link DEFAULT_WALK_BUDGET_MS}. */\nexport const WALK_BUDGET_MS_ENV_VAR = \"SKAILE_SCAN_DEADLINE_MS\";\n\n/** Read a positive-integer env override, falling back when absent or unusable. */\nfunction envInt(name: string, fallback: number): number {\n  const raw = process.env[name];\n  if (raw === undefined) return fallback;\n  const parsed = Number.parseInt(raw, 10);\n  return Number.isFinite(parsed) && parsed > 0 ? parsed : fallback;\n}\n\n/**\n * Why a walk stopped early. Every one of these means the returned entries are a\n * **partial** view of the tree — never present a truncated walk as complete.\n *\n * @docLink packages/core/concepts#walk-dir\n */\nexport interface WalkTruncation {\n  reason: \"depth\" | \"entries\" | \"budget\" | \"cycle\" | \"unreadable\";\n  /** Directory (or symlink) at which the bound was hit. */\n  path: string;\n  /** The bound that was hit, when the reason has a numeric limit. */\n  limit?: number;\n}\n\n/**\n * Bounds for {@link walkDir} / {@link scanDirectory}.\n *\n * @docLink packages/core/concepts#walk-dir\n */\nexport interface WalkOptions {\n  /** Maximum nesting depth below the root. Default {@link DEFAULT_WALK_MAX_DEPTH}. */\n  maxDepth?: number;\n  /** Maximum directory entries examined across the whole walk. Default {@link DEFAULT_WALK_MAX_ENTRIES}. */\n  maxEntries?: number;\n  /**\n   * Wall-clock budget for the whole walk. Default {@link DEFAULT_WALK_BUDGET_MS}.\n   * The check is inclusive, so `0` yields no entries at all.\n   */\n  budgetMs?: number;\n  /** Per-`opendir`/`stat`/`readFile` deadline. Default {@link fsDeadlineMs}. */\n  opTimeoutMs?: number;\n  /**\n   * Called once per distinct truncation reason. Defaults to a `warn` on the\n   * core logger — override to route the signal somewhere the caller can act on.\n   */\n  onTruncate?: (info: WalkTruncation) => void;\n}\n\n/**\n * Options for {@link scanDirectory}: the walk bounds plus the registered kind set\n * (`new Set(registry.getAllKinds())`) that typed frontmatter is checked against.\n */\nexport interface ScanOptions extends WalkOptions {\n  /** Registered asset kinds; a `SKILL.md` `type:` outside it is reported, not catalogued. */\n  knownKinds: ReadonlySet<string>;\n  /** Sink for scan diagnostics (`unknown_asset_kind`). Defaults to a `warn` on the core logger. */\n  onDiagnostic?: (diagnostic: Diagnostic) => void;\n  /**\n   * Return every asset found instead of one per `kind:name`. The default keeps the\n   * alphabetically later source path, which hides a second directory holding the\n   * same asset; a caller that must report such duplicates (`library index`) sets this.\n   */\n  keepDuplicates?: boolean;\n}\n\n/** Mutable bookkeeping threaded through one walk. */\ninterface WalkState {\n  maxDepth: number;\n  maxEntries: number;\n  opTimeoutMs: number | undefined;\n  deadlineAt: number;\n  examined: number;\n  /**\n   * `dev:ino` of the directories on the **current path from the root** — an\n   * ancestor stack, not an ever-visited set. Re-entering an ancestor is a cycle;\n   * re-reaching a directory off the current path is a diamond, and must be walked.\n   */\n  ancestors: Set<string>;\n  reported: Set<WalkTruncation[\"reason\"]>;\n  onTruncate: (info: WalkTruncation) => void;\n}\n\nlet walkLogger: ReturnType<typeof createLogger> | undefined;\n\n/** Default truncation sink — a structured warning naming the bound that was hit. */\nfunction warnTruncation(info: WalkTruncation): void {\n  walkLogger ??= createLogger({ kind: \"runner\", subkind: \"asset-scan\" });\n  walkLogger.warn(`asset scan truncated (${info.reason}) — results are incomplete`, {\n    ...info,\n  });\n}\n\n/** Default diagnostic sink for {@link scanDirectory}. */\nfunction warnDiagnostic(d: Diagnostic): void {\n  walkLogger ??= createLogger({ kind: \"runner\", subkind: \"asset-scan\" });\n  walkLogger.warn(d.message, { code: d.code, path: d.path });\n}\n\n/** Record a truncation once per reason so a wide tree does not spam the log. */\nfunction truncate(state: WalkState, info: WalkTruncation): void {\n  if (state.reported.has(info.reason)) return;\n  state.reported.add(info.reason);\n  state.onTruncate(info);\n}\n\n/**\n * Stable identity (`dev:ino`) of the directory `path` resolves to, or `null`\n * when it cannot be stat'ed within the deadline. Used to terminate symlink\n * cycles — the pre-#454 walker recursed forever on `a/link -> a`.\n */\nasync function dirIdentity(path: string, timeoutMs: number | undefined): Promise<string | null> {\n  const st = await tryWithFsDeadline(`stat ${path}`, () => stat(path), null, timeoutMs);\n  return st ? `${st.dev}:${st.ino}` : null;\n}\n\n/**\n * Read one directory's entries under a deadline, capped at the walk's remaining\n * entry budget. Uses `opendir` rather than `readdir` so a pathological directory\n * streams instead of materialising in full; entries are collected and sorted\n * because the `scanDirectory` dedup rule (\"alphabetically later source wins\")\n * depends on a deterministic per-level order.\n */\nasync function readDirEntries(\n  dir: string,\n  state: WalkState,\n): Promise<{ entries: Dirent[]; capped: boolean } | null> {\n  const remaining = state.maxEntries - state.examined;\n  if (remaining <= 0) return { entries: [], capped: true };\n  try {\n    return await withFsDeadline(\n      `opendir ${dir}`,\n      async () => {\n        const handle = await opendir(dir);\n        const entries: Dirent[] = [];\n        let capped = false;\n        for await (const e of handle) {\n          // Stop *before* keeping the over-budget entry, so `capped` means \"an\n          // entry was actually dropped\". Breaking after the push instead marked\n          // a directory of exactly `remaining` entries as truncated — and since\n          // `truncate()` reports once per reason for the whole walk, that\n          // spurious first report swallowed a later genuine one.\n          if (entries.length >= remaining) {\n            capped = true;\n            break;\n          }\n          entries.push(e);\n        }\n        entries.sort((a, b) => (a.name < b.name ? -1 : 1));\n        return { entries, capped };\n      },\n      state.opTimeoutMs,\n    );\n  } catch {\n    // Unreadable (permissions, vanished mid-walk) or the mount missed its\n    // deadline. Either way this subtree contributes nothing; keep walking.\n    truncate(state, { reason: \"unreadable\", path: dir });\n    return null;\n  }\n}\n\n/**\n * Recursively yield every file entry under `dir`, sorted alphabetically at each\n * level. Skips `.git` and `node_modules` directories and follows symlinks\n * (resolving to the stat target). `node_modules` is excluded because Bun's\n * `node_modules/.bun/...` layout contains symlink farms that form cycles when\n * packages reference each other transitively.\n *\n * **Async and bounded since #454.** A repo root can resolve onto the rclone FUSE\n * mount, where the previous synchronous `readdirSync`/`statSync` walk parked the\n * whole event loop. Four bounds now hold, and hitting any of them reports a\n * {@link WalkTruncation} — a truncated walk is never presented as a complete one:\n *\n * - **depth** ({@link WalkOptions.maxDepth}) — also the backstop for a cycle no\n *   inode check can see, e.g. a bind mount of the root inside itself.\n * - **entry count** ({@link WalkOptions.maxEntries}) — total directory entries\n *   examined, so an enormous tree cannot run unbounded.\n * - **wall-clock budget** ({@link WalkOptions.budgetMs}) — a wedged mount that\n *   times out one operation at a time cannot add up to an unbounded scan.\n * - **ancestor inodes** — the `dev:ino` of every directory on the path from the\n *   root is held while its subtree is walked, so `a/link -> a` terminates\n *   instead of recursing forever. Two sibling symlinks onto one shared\n *   directory are a diamond, not a cycle: both are walked, at the price of\n *   visiting the shared subtree twice — bounded by the entry and time budgets.\n *\n * @param dir - Absolute path to the directory to walk\n * @param options - Bounds and truncation sink; see {@link WalkOptions}\n * @docLink packages/core/concepts#walk-dir\n */\nexport async function* walkDir(dir: string, options: WalkOptions = {}): AsyncGenerator<WalkEntry> {\n  const state: WalkState = {\n    maxDepth: options.maxDepth ?? envInt(WALK_MAX_DEPTH_ENV_VAR, DEFAULT_WALK_MAX_DEPTH),\n    maxEntries: options.maxEntries ?? envInt(WALK_MAX_ENTRIES_ENV_VAR, DEFAULT_WALK_MAX_ENTRIES),\n    opTimeoutMs: options.opTimeoutMs,\n    deadlineAt:\n      Date.now() + (options.budgetMs ?? envInt(WALK_BUDGET_MS_ENV_VAR, DEFAULT_WALK_BUDGET_MS)),\n    examined: 0,\n    ancestors: new Set<string>(),\n    reported: new Set<WalkTruncation[\"reason\"]>(),\n    onTruncate: options.onTruncate ?? warnTruncation,\n  };\n  // The root is an ancestor of everything, so it is seeded here and never\n  // popped — a self-referential `root/link -> root` is caught on first descent.\n  const rootId = await dirIdentity(dir, state.opTimeoutMs);\n  if (rootId) state.ancestors.add(rootId);\n  yield* walkFrom(dir, 0, state);\n}\n\nasync function* walkFrom(dir: string, depth: number, state: WalkState): AsyncGenerator<WalkEntry> {\n  if (depth > state.maxDepth) {\n    truncate(state, { reason: \"depth\", path: dir, limit: state.maxDepth });\n    return;\n  }\n  if (Date.now() >= state.deadlineAt) {\n    truncate(state, { reason: \"budget\", path: dir });\n    return;\n  }\n\n  const read = await readDirEntries(dir, state);\n  if (!read) return;\n  if (read.capped) truncate(state, { reason: \"entries\", path: dir, limit: state.maxEntries });\n\n  for (const e of read.entries) {\n    if (state.examined >= state.maxEntries) {\n      truncate(state, { reason: \"entries\", path: dir, limit: state.maxEntries });\n      return;\n    }\n    if (Date.now() >= state.deadlineAt) {\n      truncate(state, { reason: \"budget\", path: dir });\n      return;\n    }\n    state.examined++;\n    const full = join(dir, e.name);\n\n    if (e.isSymbolicLink()) {\n      // A symlink is the only way a cycle can enter this walk, so identity is\n      // resolved here and nowhere else — one extra stat per link, none per\n      // ordinary directory.\n      const st = await tryWithFsDeadline(`stat ${full}`, () => stat(full), null, state.opTimeoutMs);\n      if (!st) continue;\n      if (st.isDirectory()) {\n        if (e.name === \".git\" || e.name === \"node_modules\") continue;\n        const id = `${st.dev}:${st.ino}`;\n        // Only an *ancestor* is a cycle. A target already walked elsewhere in\n        // the tree is a diamond (`a/link -> shared`, `b/link -> shared`) and\n        // dropping it would silently lose that subtree from the scan.\n        if (state.ancestors.has(id)) {\n          truncate(state, { reason: \"cycle\", path: full });\n          continue;\n        }\n        state.ancestors.add(id);\n        try {\n          yield* walkFrom(full, depth + 1, state);\n        } finally {\n          // finally, not a trailing delete: an early `return` from the bounds\n          // checks — or an abandoned consumer — would otherwise leave the\n          // ancestor stack holding a directory the walk has already left.\n          state.ancestors.delete(id);\n        }\n      } else {\n        yield { path: full, name: e.name };\n      }\n    } else if (e.isDirectory()) {\n      if (e.name !== \".git\" && e.name !== \"node_modules\") yield* walkFrom(full, depth + 1, state);\n    } else if (e.isFile()) {\n      yield { path: full, name: e.name };\n    }\n  }\n}\n\n// ── Public scanner ────────────────────────────────────────────────────────────\n\n/**\n * Coerce a scanned entry's `name` to a canonical asset name in place. When the\n * raw name is already canonical this is a no-op; otherwise the original is stashed\n * on `metadata.displayName` (only when not already set) so callers keep the pretty\n * label for display while identity uses the slug. A name that slugifies to empty\n * is left untouched — `parseAssetRef` will reject it downstream with its full hint.\n */\nfunction normalizeEntryName(e: CatalogEntry): void {\n  if (isValidAssetName(e.name)) return;\n  let slug: string;\n  try {\n    slug = slugifyAssetName(e.name);\n  } catch {\n    return;\n  }\n  const original = e.name;\n  e.name = slug;\n  if (e.metadata?.displayName === undefined) {\n    e.metadata = { ...e.metadata, displayName: original };\n  }\n}\n\n/**\n * Build a `CatalogEntry` from an already-read manifest, dispatching on filename.\n * Returns `null` when the filename is not a recognized manifest.\n */\nfunction entryFromManifest(\n  name: string,\n  content: string,\n  filePath: string,\n  repoName: string,\n  knownKinds: ReadonlySet<string>,\n): CatalogEntry | null {\n  if (name === \"SKILL.md\") return fromSkillMdContent(content, repoName, filePath, knownKinds);\n  if (name === \"AGENT.md\") return fromAgentMdContent(content, repoName, filePath);\n  if (name === \"agent.yaml\") return fromAgentYamlContent(content, repoName, filePath);\n  if (name === \"CONTRACT.md\") return fromContractMdContent(content, repoName, filePath);\n  if (name === \"MCP.md\") return fromMcpServerMdContent(content, repoName, filePath);\n  if (name === \"CONNECTOR.md\") return fromConnectorMdContent(content, repoName, filePath);\n  if (name === \"knowledge.yaml\") return fromKnowledgeYamlContent(content, repoName, filePath);\n  if (name.endsWith(\".prompt.md\")) return fromPromptMdContent(content, repoName, filePath);\n  if (name.endsWith(\".preset.yaml\")) return fromPresetYamlContent(content, repoName, filePath);\n  if (name.endsWith(\".flow.yaml\") || name.endsWith(\".flow.json\"))\n    return fromFlowYamlContent(content, repoName, filePath);\n  return null;\n}\n\n/** Filenames {@link scanDirectory} recognises as asset manifests. */\nfunction isManifestName(name: string): boolean {\n  return (\n    name === \"SKILL.md\" ||\n    name === \"AGENT.md\" ||\n    name === \"agent.yaml\" ||\n    name === \"CONTRACT.md\" ||\n    name === \"MCP.md\" ||\n    name === \"CONNECTOR.md\" ||\n    name === \"knowledge.yaml\" ||\n    name.endsWith(\".prompt.md\") ||\n    name.endsWith(\".preset.yaml\") ||\n    name.endsWith(\".flow.yaml\") ||\n    name.endsWith(\".flow.json\")\n  );\n}\n\n/** Per-asset values a `skaile.manifest.yaml` `assets[]` entry overrides on the scanned entry. */\ninterface ManifestAssetOverride {\n  publisher?: string;\n  dependencies: string[];\n}\n\n/**\n * Per-asset overrides declared in `<root>/skaile.manifest.yaml` `assets[]` (`publisher`,\n * `dependencies`), keyed `kind:name`. Empty when the manifest is absent, unreadable within\n * the deadline, or not valid YAML — a scan never fails on it.\n */\nasync function readManifestAssetOverrides(\n  root: string,\n  opTimeoutMs: number,\n): Promise<Record<string, ManifestAssetOverride>> {\n  const out: Record<string, ManifestAssetOverride> = {};\n  const file = join(root, \"skaile.manifest.yaml\");\n  const content = await tryWithFsDeadline(\n    `readFile ${file}`,\n    () => readFile(file, \"utf8\"),\n    null,\n    opTimeoutMs,\n  );\n  if (content === null) return out;\n  let doc: unknown;\n  try {\n    doc = parse(content);\n  } catch {\n    return out;\n  }\n  const assets = (doc as { assets?: unknown } | null)?.assets;\n  if (!Array.isArray(assets)) return out;\n  for (const a of assets) {\n    const { kind, name, publisher, dependencies } = (a ?? {}) as Record<string, unknown>;\n    if (typeof kind !== \"string\" || typeof name !== \"string\") continue;\n    const override: ManifestAssetOverride = {\n      dependencies: Array.isArray(dependencies)\n        ? dependencies.filter((d): d is string => typeof d === \"string\" && d.trim().length > 0)\n        : [],\n    };\n    const bare = typeof publisher === \"string\" ? publisher.trim().replace(/^@/, \"\") : \"\";\n    if (bare) override.publisher = bare;\n    if (override.publisher || override.dependencies.length > 0) out[`${kind}:${name}`] = override;\n  }\n  return out;\n}\n\n/**\n * Fold a manifest entry's `dependencies` into `entry.requires`: the manifest field is the\n * author-declared requirement list of the entry (same meaning as `requires`), so every\n * consumer of the scanned entry (`add`, `install`, `info`, `check`, `doctor`) sees it.\n * A requirement the file already declares is not repeated, by {@link requirementKey}\n * identity: the file's bare `report-table` and the manifest's `skill:@pub/report-table`\n * are one requirement when `pub` is the entry's own publisher.\n */\nfunction mergeManifestDependencies(entry: CatalogEntry, dependencies: readonly string[]): void {\n  entry.requires = dedupeRequirements(\n    [...entry.requires, ...dependencies.map((raw) => parseDep(raw))],\n    entry.publisher,\n  );\n}\n\n/**\n * Walk `root` recursively and return a `CatalogEntry` for every recognized asset manifest found.\n *\n * Recognized filenames: `SKILL.md`, `AGENT.md`, `agent.yaml`, `CONTRACT.md`, `MCP.md`,\n * `CONNECTOR.md`, `knowledge.yaml`, `*.prompt.md`, `*.preset.yaml`, `*.flow.yaml`, `*.flow.json`.\n *\n * When two entries share the same `kind:name` key, the one with the alphabetically\n * later source path wins (consistent with catalog precedence rules), unless\n * {@link ScanOptions.keepDuplicates} asks for every copy.\n *\n * **Async and bounded since #454.** `root` can resolve onto the rclone FUSE mount\n * (a `sources[].path` under `/skaile/workspace`), and the walk follows symlinks, so\n * even an off-mount root can descend into one. Every `opendir`/`stat`/`readFile`\n * is deadline-bounded and the walk is capped by depth, entry count, a wall-clock\n * budget, and an ancestor-inode set — see {@link walkDir}. Hitting any bound reports\n * a {@link WalkTruncation} through {@link WalkOptions.onTruncate} (a `warn` by\n * default); the returned array is then a **partial** scan, never a complete one.\n *\n * A manifest that cannot be read within its deadline is skipped rather than\n * failing the whole scan — one unreachable file must not cost the whole catalog.\n *\n * **Per-asset publisher.** When `root` holds a `skaile.manifest.yaml` whose `assets[]`\n * entry names a `publisher` for a scanned `kind`/`name`, that publisher replaces\n * `repoName` on the produced entry — the same identity the library index and\n * `library create --publisher` write, so `kind:@<publisher>/<name>` resolves.\n *\n * **Per-asset dependencies.** The same entry's `dependencies` (`kind:@<publisher>/name[#pin]`)\n * are appended to the produced entry's `requires`, next to the file's own `requires`.\n *\n * @param root - Absolute path to the directory tree to scan\n * @param repoName - Publisher attached to every produced entry without a per-asset override\n * @param options - Walk bounds and truncation sink; see {@link WalkOptions}\n * @returns Array of deduplicated `CatalogEntry` objects, one per manifest file\n * @docLink packages/core/concepts#scan-directory\n */\nexport async function scanDirectory(\n  root: string,\n  repoName: string,\n  options: ScanOptions,\n): Promise<CatalogEntry[]> {\n  const entries = new Map<string, CatalogEntry>();\n  const copies: CatalogEntry[] = [];\n  const onTruncate = options.onTruncate ?? warnTruncation;\n  const reported = new Set<WalkTruncation[\"reason\"]>();\n  const relay = (info: WalkTruncation) => {\n    reported.add(info.reason);\n    onTruncate(info);\n  };\n  const opTimeoutMs = options.opTimeoutMs ?? fsDeadlineMs();\n  const manifestOverrides = await readManifestAssetOverrides(root, opTimeoutMs);\n\n  function add(e: CatalogEntry): void {\n    // Boundary normalization: a third-party source we don't control may name an\n    // asset with a human-styled identity (\"Complex App\"). Slugify it to a\n    // canonical name so the ref it produces parses, preserving the original on\n    // `metadata.displayName` for display. No-op for already-canonical names.\n    normalizeEntryName(e);\n    const key = `${e.kind}:${e.name}`;\n    const override = manifestOverrides[key];\n    if (override?.publisher) e.publisher = override.publisher;\n    if (override) mergeManifestDependencies(e, override.dependencies);\n    if (options.keepDuplicates) {\n      copies.push(e);\n      return;\n    }\n    const existing = entries.get(key);\n    if (!existing) {\n      entries.set(key, e);\n      return;\n    }\n    // Among duplicates, alphabetically later source path wins\n    if (e.source > existing.source) entries.set(key, e);\n  }\n\n  for await (const { path: filePath, name } of walkDir(root, {\n    ...options,\n    opTimeoutMs,\n    onTruncate: relay,\n  })) {\n    if (!isManifestName(name)) continue;\n    const content = await tryWithFsDeadline(\n      `readFile ${filePath}`,\n      () => readFile(filePath, \"utf8\"),\n      null,\n      opTimeoutMs,\n    );\n    if (content === null) {\n      // Unreadable or past its deadline — the catalog loses this asset, not the\n      // whole scan. Reported once so a wedged mount is visible in the logs.\n      if (!reported.has(\"unreadable\")) relay({ reason: \"unreadable\", path: filePath });\n      continue;\n    }\n    try {\n      const entry = entryFromManifest(name, content, filePath, repoName, options.knownKinds);\n      if (entry) add(entry);\n    } catch (err) {\n      if (err instanceof ManifestKindError) {\n        (options.onDiagnostic ?? warnDiagnostic)(manifestKindDiagnostic(err));\n      }\n    }\n  }\n\n  return options.keepDuplicates ? copies : [...entries.values()];\n}\n"]}

package/dist/chunk-YBQONMH2.js.map

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Indexing reuses the same\n * `LocalCatalogSource.sync()` engine `source add`/`sync` run — a library is\n * scanned + upserted keyed by `library_id = lib.id`.\n *\n * @docLink cli/commands/library\n */\n\nimport * as fs from \"node:fs\";\nimport * as path from \"node:path\";\nimport {\n  isValidPublisher,\n  loadSkPublishManifest,\n  matchPin,\n  parseDep,\n  parseFrontmatter,\n  PUBLISHER_HINT,\n  SKAILE_MANIFEST_FILENAME,\n  slugifyAssetName,\n} from \"@skaile/workspaces/core\";\nimport { type DiscoveredAsset, requiresSyntaxErrors } from \"@skaile/workspaces/discovery\";\nimport {\n  type Library,\n  LocalIndex,\n  resolveIndexPath,\n  stampManifestPublisher,\n  upsertManifestAsset,\n} from \"@skaile/workspaces/library\";\nimport { Option } from \"commander\";\nimport { parse as parseYaml, stringify as stringifyYaml } from \"yaml\";\nimport { logErr, logWarn } from \"../helpers.ts\";\nimport { openLibrary } from \"../open-library.ts\";\nimport { getKindRegistry } from \"../open-registry.ts\";\nimport { getStoreIdentity } from \"../store-auth.ts\";\nimport { refFor } from \"./publish-core.ts\";\n\n/** One malformed `assets[].dependencies` entry of a library's `skaile.manifest.yaml`. */\nexport interface ManifestRequiresProblem {\n  /** `kind:name` of the manifest asset that declares the entry. */\n  asset: string;\n  /** `ManifestRequiresError: invalid requires entry \"<entry>\"` — the text discovery reports. */\n  message: string;\n}\n\n/**\n * Check every `assets[].dependencies` entry of `<dir>/skaile.manifest.yaml` with\n * the discovery syntax rule. Reads the raw YAML on purpose: `decodeSkaileManifest`\n * drops a malformed dependency (with a warning) before discovery or the index ever\n * sees it, so only the raw text can say which entry is wrong. Shared by\n * `skaile validate` and `skaile library index`, so both fail with the same message.\n */\nexport function manifestRequiresProblems(dir: string): ManifestRequiresProblem[] {\n  const file = path.join(dir, \"skaile.manifest.yaml\");\n  let doc: unknown;\n  try {\n    doc = parseYaml(fs.readFileSync(file, \"utf-8\"));\n  } catch {\n    return []; // absent / unparsable: reported by the loaders that own that failure\n  }\n  const assets = (doc as { assets?: unknown } | null)?.assets;\n  if (!Array.isArray(assets)) return [];\n  const problems: ManifestRequiresProblem[] = [];\n  for (const a of assets) {\n    if (!a || typeof a !== \"object\") continue;\n    const { kind, name, dependencies } = a as Record<string, unknown>;\n    if (!Array.isArray(dependencies)) continue;\n    const entries = dependencies.map((d) => (typeof d === \"string\" ? d : String(d)));\n    for (const message of requiresSyntaxErrors(entries)) {\n      problems.push({\n        asset: `${String(kind)}:${String(name)}`,\n        message: `ManifestRequiresError: ${message}`,\n      });\n    }\n  }\n  return problems;\n}\n\n/**\n * `publisher/kind:name` → the versions registered libraries hold, read offline: the library\n * at `dir` itself (its manifest), the assets in the local index (`index.db`) and the manifest\n * of every library the index lists. The index never gets created for this: no `index.db`\n * means only `dir` counts.\n */\nasync function knownAssetVersions(dir: string): Promise<Record<string, string[]>> {\n  const known: Record<string, string[]> = {};\n  const add = (publisher: string | undefined, kind: string, name: string, version?: string) => {\n    if (!publisher) return;\n    const key = `${publisher.replace(/^@/, \"\")}/${kind}:${name}`;\n    const versions = known[key] ?? [];\n    if (version && !versions.includes(version)) versions.push(version);\n    known[key] = versions;\n  };\n  const addManifest = (libPath: string): void => {\n    const manifest = loadSkPublishManifest(libPath);\n    for (const a of manifest?.assets ?? []) {\n      add(a.publisher ?? manifest?.publisher, a.kind, a.name, a.version);\n    }\n  };\n  addManifest(dir);\n  const indexPath = resolveIndexPath();\n  if (!fs.existsSync(indexPath)) return known;\n  const index = new LocalIndex({ indexPath, kindRegistry: getKindRegistry() });\n  try {\n    for (const def of await index.listAssetDefs())\n      add(def.publisher, def.kind, def.name, def.version);\n    for (const lib of await index.listSources()) {\n      if (path.resolve(lib.path) !== path.resolve(dir) && fs.existsSync(lib.path)) {\n        addManifest(lib.path);\n      }\n    }\n  } catch {\n    // An unreadable index only narrows what counts as known.\n  } finally {\n    index.close();\n  }\n  return known;\n}\n\n/**\n * One warning line per `assets[].dependencies` entry of `<dir>/skaile.manifest.yaml` that no\n * registered library (nor the library itself) holds, or whose `#version` pin matches none of\n * the versions held. Offline: it never asks the store, so a store-only dependency is\n * reported too — the line says what was checked. Entries with invalid syntax are\n * {@link manifestRequiresProblems}' to report. Shared by `skaile validate` and `skaile library index`.\n */\nexport async function unresolvedManifestDependencies(dir: string): Promise<string[]> {\n  let doc: unknown;\n  try {\n    doc = parseYaml(fs.readFileSync(path.join(dir, SKAILE_MANIFEST_FILENAME), \"utf-8\"));\n  } catch {\n    return [];\n  }\n  const assets = (doc as { assets?: unknown } | null)?.assets;\n  if (!Array.isArray(assets)) return [];\n  const wanted: Array<{ asset: string; entry: string }> = [];\n  for (const a of assets) {\n    if (!a || typeof a !== \"object\") continue;\n    const { kind, name, dependencies } = a as Record<string, unknown>;\n    if (!Array.isArray(dependencies)) continue;\n    for (const d of dependencies) {\n      const entry = typeof d === \"string\" ? d : String(d);\n      if (requiresSyntaxErrors([entry]).length === 0) {\n        wanted.push({ asset: `${String(kind)}:${String(name)}`, entry });\n      }\n    }\n  }\n  if (wanted.length === 0) return [];\n  const known = await knownAssetVersions(dir);\n  const out: string[] = [];\n  for (const { asset, entry } of wanted) {\n    const dep = parseDep(entry);\n    if (!dep.publisher) continue; // the syntax check reports a publisher-less entry\n    const versions = known[`${dep.publisher}/${dep.kind}:${dep.name}`];\n    const prefix = `${SKAILE_MANIFEST_FILENAME} [assets] — ${asset}: dependency \"${entry}\"`;\n    if (!versions) {\n      out.push(\n        `${prefix} is not held by any registered library (checked offline: this library and the local index; the store was not asked).`,\n      );\n    } else if (dep.pin && versions.length > 0 && !versions.some((v) => matchPin(dep.pin, v))) {\n      out.push(\n        `${prefix} has no version matching \"${dep.pin}\" in any registered library (held: ${versions.join(\", \")}).`,\n      );\n    }\n  }\n  return out;\n}\n\n/** The one refusal text for a publisher that fails {@link isValidPublisher}. */\nexport function invalidPublisherMessage(raw: string): string {\n  return `Invalid publisher \"${raw}\": ${PUBLISHER_HINT}.`;\n}\n\n/**\n * Validate a publisher typed on the command line (`--publisher`, `library set\n * <lib> publisher=`): strip a leading `@`, and exit 1 with {@link invalidPublisherMessage}\n * when it is not a valid slug. Returns the bare publisher.\n */\nexport function requireValidPublisherOrExit(raw: string): string {\n  const bare = raw.trim().replace(/^@/, \"\");\n  if (!isValidPublisher(bare)) {\n    logErr(invalidPublisherMessage(raw));\n    process.exit(1);\n  }\n  return bare;\n}\n\n/**\n * Every publisher in `<dir>/skaile.manifest.yaml` (top-level and `assets[].publisher`)\n * that is not a valid slug, one message each. Reads the raw YAML like\n * {@link manifestRequiresProblems}. Shared by `skaile validate`, `skaile library index`\n * and the publish plan, so all three refuse a publisher with the same text.\n */\nexport function manifestPublisherProblems(dir: string): string[] {\n  let doc: unknown;\n  try {\n    doc = parseYaml(fs.readFileSync(path.join(dir, SKAILE_MANIFEST_FILENAME), \"utf-8\"));\n  } catch {\n    return []; // absent / unparsable: reported by the loaders that own that failure\n  }\n  if (!doc || typeof doc !== \"object\") return [];\n  const { publisher, assets } = doc as { publisher?: unknown; assets?: unknown };\n  const problems: string[] = [];\n  const check = (value: unknown, where: string): void => {\n    if (typeof value !== \"string\") return;\n    if (!isValidPublisher(value.trim().replace(/^@/, \"\"))) {\n      problems.push(`${SKAILE_MANIFEST_FILENAME} ${where} — ${invalidPublisherMessage(value)}`);\n    }\n  };\n  check(publisher, \"[publisher]\");\n  if (Array.isArray(assets)) {\n    for (const a of assets) {\n      if (!a || typeof a !== \"object\") continue;\n      const { kind, name, publisher: assetPublisher } = a as Record<string, unknown>;\n      check(assetPublisher, `[assets] ${String(kind)}:${String(name)}`);\n    }\n  }\n  return problems;\n}\n\n/**\n * Exit 1 when `<dir>/skaile.manifest.yaml` names a publisher that is not a valid slug\n * ({@link manifestPublisherProblems}); the refusal `library create`, `asset import`,\n * `library index` and the publish plan share. `libName` is the registered library.\n */\nexport function exitOnManifestPublisherProblems(dir: string, libName: string): void {\n  const problems = manifestPublisherProblems(dir);\n  if (problems.length === 0) return;\n  for (const message of problems) logErr(message);\n  logErr(\n    `Fix the publisher in ${SKAILE_MANIFEST_FILENAME} (\\`skaile library set ${libName} publisher=<name>\\` rewrites the library's own), then re-run.`,\n  );\n  process.exit(1);\n}\n\n/** Discovery result surfaced by {@link indexLibrary}. */\nexport interface IndexLibraryResult {\n  /** Assets discovered on disk under the library root. */\n  assetsFound: number;\n  /** Assets upserted into `asset_definitions`. */\n  assetsUpdated: number;\n  /** Fatal per-asset errors (never advisories). */\n  errors: string[];\n}\n\n/**\n * Index a library's assets into the shared `asset_definitions` index.\n *\n * Runs `LocalCatalogSource.sync()` against the library's `path` keyed by\n * `library_id = lib.id`. Pass an already-open {@link LocalIndex} (e.g. the one\n * `openLibraryManager()` holds) to reuse the single connection — the caller then\n * owns closing it. With no `index` a fresh handle is opened and closed here.\n * `exclude` leaves matching discovered assets out of the index (`library index`\n * uses it for assets it refused to write into the manifest).\n * Returns the sync counters so a caller can report `Indexed N asset(s)`.\n */\nexport async function indexLibrary(\n  lib: Library,\n  index?: LocalIndex,\n  opts: { exclude?: (asset: DiscoveredAsset) => boolean } = {},\n): Promise<IndexLibraryResult> {\n  const { LocalCatalogSource } = await import(\"@skaile/workspaces/library\");\n  const own = index ?? (await openLibrary());\n  try {\n    const source = new LocalCatalogSource(own, lib.id, lib.path, getKindRegistry());\n    const res = await source.sync({ exclude: opts.exclude });\n    if (res.pruned.length > 0) {\n      // The index keeps one row per ref, so the rows this sync removed may be the\n      // copy another library still holds (a library re-published a ref under a new\n      // publisher). Put them back from that library's own directory.\n      const lost = new Set(res.pruned);\n      for (const other of await own.listSources()) {\n        if (other.id === lib.id || other.backend !== \"local\" || !other.path) continue;\n        if (!fs.existsSync(other.path)) continue;\n        await new LocalCatalogSource(own, other.id, other.path, getKindRegistry()).sync({\n          only: lost,\n        });\n      }\n    }\n    return {\n      assetsFound: res.assetsFound,\n      assetsUpdated: res.assetsUpdated,\n      errors: res.errors,\n    };\n  } finally {\n    if (!index) own.close();\n  }\n}\n\n/** Where {@link resolveLibraryPublisherDetailed} found the publisher. */\nexport type LibraryPublisherSource = \"flag\" | \"manifest\" | \"identity\" | \"library-name\";\n\n/**\n * Resolve the publisher for an asset created inside a library. Never throws.\n *\n * Fallback chain (first hit wins):\n *   1. `opts.publisher` (an explicit `--publisher`),\n *   2. the library manifest's top-level `publisher` (`skaile.manifest.yaml`),\n *   3. the author's verified store identity (`githubLogin`, else `username`)\n *      when signed in — the publisher they can actually publish under,\n *   4. the kebab-cased library name (e.g. `My Lib` → `my-lib`) as a last resort.\n *\n * The publisher is never derived from where the asset sits in the library:\n * every asset inherits the library's publisher unless it sets its own.\n *\n * Identity beats the library name because the library name is almost never a\n * namespace the author can publish; stamping it led to publishes that only\n * failed at the store. Passed in (not read here) to keep this pure + testable.\n *\n * @param lib - The target library.\n * @param opts - Optional explicit `--publisher`.\n * @param storeIdentity - The author's decoded store identity, or null when signed out.\n * @returns The bare publisher and which link of the chain supplied it.\n */\nexport function resolveLibraryPublisherDetailed(\n  lib: Pick<Library, \"name\" | \"path\">,\n  opts: { publisher?: string },\n  storeIdentity?: { username?: string; githubLogin?: string } | null,\n): { publisher: string; source: LibraryPublisherSource } {\n  const bare = (p: string) => (p.startsWith(\"@\") ? p.slice(1) : p);\n  if (opts.publisher?.trim()) return { publisher: bare(opts.publisher.trim()), source: \"flag\" };\n  const declared = loadSkPublishManifest(lib.path)?.publisher?.trim();\n  if (declared) return { publisher: bare(declared), source: \"manifest\" };\n  // A login is case-insensitive on GitHub, so fold it to the lowercase slug; one that\n  // still fails the slug rule falls through to the library name.\n  const identity = (storeIdentity?.githubLogin ?? storeIdentity?.username)?.trim().toLowerCase();\n  if (identity && isValidPublisher(identity)) return { publisher: identity, source: \"identity\" };\n  // slugifyAssetName throws on a name with no [a-z0-9] — keep the chain total. The slug is\n  // cut to 39 characters so the fallback always passes the publisher rule.\n  try {\n    const slug = slugifyAssetName(lib.name).slice(0, 39).replace(/-+$/, \"\");\n    return { publisher: slug, source: \"library-name\" };\n  } catch {\n    return { publisher: \"library\", source: \"library-name\" };\n  }\n}\n\n/** {@link resolveLibraryPublisherDetailed} without the provenance. */\nexport function resolveLibraryPublisher(\n  lib: Pick<Library, \"name\" | \"path\">,\n  opts: { publisher?: string },\n  storeIdentity?: { username?: string; githubLogin?: string } | null,\n): string {\n  return resolveLibraryPublisherDetailed(lib, opts, storeIdentity).publisher;\n}\n\n/**\n * Warn that an asset's publisher fell back to the library name — the one text\n * `library create`, `asset import`, `library index` and the `init` adopt path\n * share. Prints nothing for any other {@link LibraryPublisherSource}.\n *\n * `hasPublisherFlag` is true for the commands that take `--publisher` (`create`,\n * `asset import`); `init` and `index` do not, so they must not advise it.\n */\nexport function warnLibraryNameFallback(\n  libName: string,\n  resolved: { publisher: string; source: LibraryPublisherSource },\n  hasPublisherFlag = false,\n): void {\n  if (resolved.source !== \"library-name\") return;\n  const setLater = `\\`skaile library set ${libName} publisher=<name>\\``;\n  logWarn(\n    `No publisher given and not signed in — using the library name \"${resolved.publisher}\" as the publisher. ` +\n      (hasPublisherFlag\n        ? `Pass --publisher <name> or run \\`skaile store login\\`; change it later with ${setLater}.`\n        : `Run \\`skaile store login\\`, or change it later with ${setLater}.`),\n  );\n}\n\n/**\n * Re-serialise a freshly written asset's markdown marker (SKILL.md / AGENT.md /\n * CONTRACT.md / `*.prompt.md`) so `library create` and `asset import` leave the\n * same canonical frontmatter (`version: 0.1.0`, not the scaffold's quoted\n * `version: \"0.1.0\"`). Never adds or changes a key — the publisher lives in the\n * manifest only. A YAML marker (flow / preset) or an unparsable file is left\n * untouched.\n */\nfunction normalizeAssetFrontmatter(assetDir: string): void {\n  let markerFile = [\"SKILL.md\", \"AGENT.md\", \"CONTRACT.md\"]\n    .map((m) => path.join(assetDir, m))\n    .find((f) => fs.existsSync(f));\n  if (!markerFile) {\n    // Only a `.prompt.md` marker carries asset frontmatter — never a bare `.md`\n    // catch-all, which would rewrite (and corrupt) a template's README/CHANGELOG.\n    const promptMd = fs.readdirSync(assetDir).find((f) => f.endsWith(\".prompt.md\"));\n    if (promptMd) markerFile = path.join(assetDir, promptMd);\n  }\n  if (!markerFile) return;\n  try {\n    const { data, body } = parseFrontmatter(fs.readFileSync(markerFile, \"utf8\"));\n    const fm = stringifyYaml(data).trimEnd();\n    fs.writeFileSync(markerFile, `---\\n${fm}\\n---\\n\\n${body}\\n`, \"utf8\");\n  } catch {\n    // Non-fatal — the file stays as written.\n  }\n}\n\n/** What {@link registerLibraryAsset} needs to know about the asset that just landed in a library. */\nexport interface RegisterLibraryAssetInput {\n  kind: string;\n  name: string;\n  /** Absolute directory of the asset inside the library. */\n  assetDir: string;\n  /** Version written to the manifest entry and the printed ref. */\n  version: string;\n  /** Explicit `--publisher`. */\n  publisher?: string;\n}\n\n/**\n * Make an asset that was just written into a library consumable — the shared\n * tail of `library create` and `asset import`, so both produce the same\n * manifest entry, frontmatter shape and index rows:\n *   1. resolve the publisher ({@link resolveLibraryPublisherDetailed}); when it\n *      came from the library-name fallback, warn once how to set a real one,\n *   2. stamp it into the manifest's top-level `publisher` (first writer wins) —\n *      the manifest is the only place a publisher lives; the asset file is\n *      left untouched,\n *   3. upsert the manifest `assets[]` entry (`library publish` ships only that\n *      inventory),\n *   4. index the library so `add` / `search --local` find the asset at once.\n *\n * @returns the bare publisher and the canonical ref (`kind:@pub/name#version`).\n */\nexport async function registerLibraryAsset(\n  lib: Library,\n  index: LocalIndex,\n  input: RegisterLibraryAssetInput,\n): Promise<{ publisher: string; ref: string }> {\n  const { publisher, source } = resolveLibraryPublisherDetailed(\n    lib,\n    { publisher: input.publisher },\n    getStoreIdentity(),\n  );\n  warnLibraryNameFallback(lib.name, { publisher, source }, true);\n  normalizeAssetFrontmatter(input.assetDir);\n  stampManifestPublisher(lib.path, publisher);\n  upsertManifestAsset(lib.path, {\n    kind: input.kind,\n    name: input.name,\n    root: path.relative(lib.path, input.assetDir) || input.name,\n    version: input.version,\n    publisher,\n  });\n  const idx = await indexLibrary(lib, index);\n  for (const e of idx.errors) logWarn(e);\n  return { publisher, ref: refFor(input.kind, publisher, input.name, input.version) };\n}\n\n/** Where an npm user reads the 4.x → 5.x library upgrade (MIGRATION.md is not in the package). */\nexport const LIBRARY_UPGRADE_DOCS =\n  \"https://github.com/skaile-ai/workspaces/blob/main/docs/sections/cli/commands/library.md#upgrading-a-4x-library\";\n\n/** What replaced `DOMAIN.md`: 5.0 removed domains. */\nexport const DOMAIN_REMOVED_HINT = `Domains were removed in 5.0 — delete DOMAIN.md files; group assets with .claude-plugin/marketplace.json. See ${LIBRARY_UPGRADE_DOCS}`;\n\n/** Hidden `--domain <domain>` option: 4.x muscle memory gets {@link DOMAIN_REMOVED_HINT}, not \"unknown option\". */\nexport function removedDomainOption(): Option {\n  return new Option(\"--domain <domain>\", \"Removed in 5.0\").hideHelp();\n}\n\n/** Exit 1 with {@link DOMAIN_REMOVED_HINT} when the removed `--domain` option was passed. */\nexport function rejectRemovedDomainOption(opts: { domain?: unknown }): void {\n  if (opts.domain === undefined) return;\n  logErr(DOMAIN_REMOVED_HINT);\n  process.exit(1);\n}\n\n/** Collect the files below `root` whose name satisfies `match`, skipping dot-dirs and `node_modules`. */\nfunction findFiles(root: string, match: (name: string) => boolean): string[] {\n  const found: string[] = [];\n  const walk = (dir: string): void => {\n    let entries: fs.Dirent[];\n    try {\n      entries = fs.readdirSync(dir, { withFileTypes: true });\n    } catch {\n      return;\n    }\n    for (const entry of entries) {\n      if (entry.isDirectory()) {\n        if (!entry.name.startsWith(\".\") && entry.name !== \"node_modules\") {\n          walk(path.join(dir, entry.name));\n        }\n      } else if (match(entry.name)) {\n        found.push(path.join(dir, entry.name));\n      }\n    }\n  };\n  walk(root);\n  return found;\n}\n\n/** Count `DOMAIN.md` files below `root`, skipping dot-dirs and `node_modules`. */\nexport function countDomainFiles(root: string): number {\n  return findFiles(root, (name) => name === \"DOMAIN.md\").length;\n}\n\n/**\n * Print ONE warning when `root` still holds `DOMAIN.md` files: since 5.0 they\n * are ignored silently, so without this an author never learns why grouping\n * stopped working. Warning only - never changes an exit code.\n *\n * @returns the number of `DOMAIN.md` files found.\n */\nexport function warnIgnoredDomainFiles(root: string): number {\n  const count = countDomainFiles(root);\n  if (count > 0) {\n    logWarn(\n      `${count} DOMAIN.md file(s) are ignored since 5.0 (domains were removed) — delete them; ` +\n        `group assets with .claude-plugin/marketplace.json. See ${LIBRARY_UPGRADE_DOCS}`,\n    );\n  }\n  return count;\n}\n\n/**\n * Print ONE warning when `root` still holds `*.bundle.yaml` files: the `bundle`\n * kind is gone (now `preset`), so neither `index` nor `validate` scans them.\n * Warning only - never changes an exit code.\n *\n * @returns the number of `*.bundle.yaml` files found.\n */\nexport function warnLegacyBundleFiles(root: string): number {\n  const files = findFiles(root, (name) => name.endsWith(\".bundle.yaml\"));\n  if (files.length > 0) {\n    const shown = files.slice(0, 5).map((f) => path.relative(root, f) || f);\n    const more = files.length > shown.length ? `, +${files.length - shown.length} more` : \"\";\n    logWarn(\n      `${files.length} *.bundle.yaml file(s) are not scanned (the bundle kind became preset): ${shown.join(\", \")}${more}. ` +\n        `Run \\`skaile migrate assets ${root} --write\\` to rename them to *.preset.yaml. See ${LIBRARY_UPGRADE_DOCS}`,\n    );\n  }\n  return files.length;\n}\n","/**\n * Per-asset checks shared by `skaile validate`, `skaile library index` and the\n * `library publish` plan, so all three give the same verdict for the same asset\n * file: {@link checkAsset} returns the errors (semver, kind schema, flow\n * definition) and the advisories (agentskills.io conformance, untouched scaffold).\n */\n\nimport * as fs from \"node:fs\";\nimport * as path from \"node:path\";\nimport { checkAgentSkillConformance, parseFrontmatter } from \"@skaile/workspaces/core\";\nimport { parseManifestFile, SEMVER_RE } from \"@skaile/workspaces/discovery\";\nimport { parseFlowDefinition } from \"@skaile/workspaces/factory-assets/connectors/flow/contract\";\nimport type { IAssetKindRegistry } from \"@skaile/workspaces/plugins\";\nimport {\n  AGENT_BODY_PLACEHOLDER,\n  CONTRACT_BODY_PLACEHOLDER,\n  PRESET_DESCRIPTION_PLACEHOLDER,\n  PRESET_ITEM_PLACEHOLDER_REF,\n  PROMPT_BODY_PLACEHOLDER,\n  SKILL_BODY_PLACEHOLDER,\n  SKILL_DESCRIPTION_PLACEHOLDER_PREFIX,\n} from \"@skaile/workspaces/types/manifests\";\n\n/** One advisory finding, printed as `<file> [<tag>] — <text>`. */\nexport interface AssetFinding {\n  /** `skill conformance` for agentskills.io findings, else the asset kind. */\n  tag: string;\n  text: string;\n  /** `true` for an agentskills.io conformance finding (`--strict-conformance` escalates these). */\n  conformance: boolean;\n}\n\n/** The body `library create` writes per markdown kind (the skill wording is the legacy fallback). */\nconst BODY_PLACEHOLDER_BY_KIND: Record<string, string> = {\n  skill: SKILL_BODY_PLACEHOLDER,\n  agent: AGENT_BODY_PLACEHOLDER,\n  prompt: PROMPT_BODY_PLACEHOLDER,\n  contract: CONTRACT_BODY_PLACEHOLDER,\n};\n\n/** Kinds whose `library create` scaffold is `---frontmatter--- + # <name> + placeholder body`. */\nconst MARKDOWN_SCAFFOLD_KINDS: Record<string, true> = {\n  skill: true,\n  agent: true,\n  prompt: true,\n  contract: true,\n};\n\n/** The `description:` `library create flow` writes when `--description` is omitted. */\nconst FLOW_DESCRIPTION_PLACEHOLDER = \"Flow description\";\n\n/**\n * Run the advisory checks for one parsed asset manifest: agentskills.io conformance\n * (skills only) and the untouched `library create` scaffold (skill, agent, prompt,\n * contract, flow, preset). Kinds without a scaffold yield no findings.\n *\n * @param kind Asset kind of the manifest.\n * @param parsed Parsed manifest (frontmatter for markdown kinds, the document for YAML).\n * @param body The markdown body after the frontmatter (`undefined` for YAML kinds).\n * @param dirName The manifest's parent folder name (enables the skill name==dir rule).\n */\nexport function checkAssetManifest(\n  kind: string,\n  parsed: Record<string, unknown>,\n  body: string | undefined,\n  dirName: string,\n): AssetFinding[] {\n  const out: AssetFinding[] = [];\n  if (kind === \"skill\") {\n    for (const f of checkAgentSkillConformance(parsed, { dirName })) {\n      out.push({ tag: \"skill conformance\", text: `${f.field}: ${f.message}`, conformance: true });\n    }\n  }\n  if (MARKDOWN_SCAFFOLD_KINDS[kind]) {\n    // `library create` writes a placeholder body under a `# <name>` heading;\n    // shipping it untouched is never intended.\n    const bodyText = body?.replace(/^#[^\\n]*\\n+/, \"\");\n    // A prompt, contract or agent scaffolded by an older CLI carries the skill wording; it is\n    // the same untouched scaffold.\n    const isPlaceholder =\n      bodyText === SKILL_BODY_PLACEHOLDER || bodyText === BODY_PLACEHOLDER_BY_KIND[kind];\n    if (isPlaceholder) {\n      const noun = kind === \"skill\" ? \"skill prompt\" : kind;\n      out.push({\n        tag: kind,\n        text: `body is still the scaffold placeholder; write the ${noun}`,\n        conformance: false,\n      });\n    }\n  }\n  if (kind === \"flow\") {\n    if (parsed.description === FLOW_DESCRIPTION_PLACEHOLDER) {\n      out.push({\n        tag: \"flow\",\n        text: \"description is still the scaffold placeholder; say what the flow does\",\n        conformance: false,\n      });\n    }\n    if (Array.isArray(parsed.nodes) && parsed.nodes.length === 0) {\n      out.push({\n        tag: \"flow\",\n        text: \"nodes is still the scaffold placeholder (nodes: []); add the flow's nodes\",\n        conformance: false,\n      });\n    }\n  }\n  if (kind === \"preset\") {\n    if (parsed.description === PRESET_DESCRIPTION_PLACEHOLDER) {\n      out.push({\n        tag: \"preset\",\n        text: `description is still the scaffold placeholder (\"${PRESET_DESCRIPTION_PLACEHOLDER}\"); say what the preset does`,\n        conformance: false,\n      });\n    }\n    const items = Array.isArray(parsed.items) ? parsed.items : [];\n    const placeholderItem = items.some((item) => {\n      const ref = typeof item === \"string\" ? item : (item as { ref?: unknown } | null)?.ref;\n      return typeof ref === \"string\" && ref.trim() === PRESET_ITEM_PLACEHOLDER_REF;\n    });\n    if (placeholderItem) {\n      out.push({\n        tag: \"preset\",\n        text: `item ${PRESET_ITEM_PLACEHOLDER_REF} is still the scaffold placeholder; replace it with the preset's real items`,\n        conformance: false,\n      });\n    }\n  }\n  return out;\n}\n\n/** The version `library index` records for a parsed manifest: top-level `version`, else `metadata.version`. */\nexport function declaredVersion(parsed: Record<string, unknown>): string | undefined {\n  const scalar = (v: unknown): string | undefined =>\n    typeof v === \"string\" ? v : typeof v === \"number\" ? String(v) : undefined;\n  const meta = parsed.metadata;\n  const nested =\n    meta !== null && typeof meta === \"object\"\n      ? scalar((meta as Record<string, unknown>).version)\n      : undefined;\n  return scalar(parsed.version) ?? nested;\n}\n\n/** The refusal text for a version that is not semver, `undefined` when it is. */\nexport function invalidSemverText(version: string): string | undefined {\n  return SEMVER_RE.test(version) ? undefined : `version \"${version}\" is not valid semver`;\n}\n\n/**\n * The refusal for a directory that holds a kind + name another directory already holds.\n * `library index` and the publish plan print it, so both name the directory and the fix alike.\n *\n * @param dir The duplicate directory, relative to the library root.\n * @param detail Why it is a duplicate, e.g. `already registered at \"fun/skills/x\"`.\n * @param library The registered library name, for the re-run hint.\n */\nexport function duplicateAssetMessage(\n  kind: string,\n  name: string,\n  dir: string,\n  detail: string,\n  library: string,\n): string {\n  return `${kind}:${name} found in ${dir} but ${detail}. Rename or delete one of the two directories, then re-run \\`skaile library index ${library}\\`.`;\n}\n\n/** Result of {@link checkAsset}: what fails the asset, and what only warns. */\nexport interface AssetCheckResult {\n  /** Findings that fail `validate`, make `library index` exit 1 and the publish plan refuse the asset. */\n  errors: AssetFinding[];\n  /** Advisories ({@link checkAssetManifest}): printed as warnings, exit code unchanged. */\n  advisories: AssetFinding[];\n}\n\n/**\n * The one per-asset check list behind `skaile validate`, `skaile library index`\n * and `skaile library publish`. Errors: a declared version that is not semver,\n * the kind's manifest schema, a `TODO:` scaffold description (every kind; the skill\n * schema already refuses it), and for flows the flow engine's own definition parser —\n * a flow the engine cannot load is no flow. Advisories: {@link checkAssetManifest}.\n *\n * @param kind Asset kind of the manifest.\n * @param parsed Parsed manifest (frontmatter for markdown kinds, the document for YAML).\n * @param body The markdown body after the frontmatter (`undefined` for YAML kinds).\n * @param dirName The manifest's parent folder name (enables the skill name==dir rule).\n * @param registry The kind registry that owns each kind's manifest schema.\n */\nexport function checkAsset(\n  kind: string,\n  parsed: Record<string, unknown>,\n  body: string | undefined,\n  dirName: string,\n  registry: IAssetKindRegistry,\n): AssetCheckResult {\n  const errors: AssetFinding[] = [];\n  const error = (text: string): void => {\n    errors.push({ tag: kind, text, conformance: false });\n  };\n\n  const version = declaredVersion(parsed);\n  const semver = version === undefined ? undefined : invalidSemverText(version);\n  if (semver) error(semver);\n\n  const provider = registry.getProvider(kind);\n  if (!provider) {\n    error(`unknown_asset_kind: kind \"${kind}\" is not registered`);\n  } else {\n    const result = provider.validateManifest(parsed);\n    if (!result.ok) {\n      for (const e of result.errors) error(`${e.path ? `${e.path}: ` : \"\"}${e.message}`);\n    }\n  }\n\n  // The skill schema refuses the scaffold description itself; every other kind says so here,\n  // in the same words, so no kind ships `TODO: describe this …`.\n  const description = parsed.description;\n  if (\n    kind !== \"skill\" &&\n    typeof description === \"string\" &&\n    description.trim().startsWith(SKILL_DESCRIPTION_PLACEHOLDER_PREFIX)\n  ) {\n    error(\n      `description: description is still the scaffold placeholder (${SKILL_DESCRIPTION_PLACEHOLDER_PREFIX} …) — say what the ${kind} does and when to use it`,\n    );\n  }\n\n  if (kind === \"flow\") {\n    const flow = parseFlowDefinition(parsed);\n    if (!flow.ok) {\n      for (const e of flow.errors) {\n        error(`invalid flow definition: ${e.path || \"<root>\"}: ${e.message}`);\n      }\n    }\n  }\n\n  return { errors, advisories: checkAssetManifest(kind, parsed, body, dirName) };\n}\n\n/**\n * Locate the manifest file of a first-party asset inside its `root` directory:\n * `SKILL.md`, `agent.yaml` / `AGENT.md`, `CONTRACT.md`, `<name>.prompt.md`,\n * `<name>.flow.yaml` / `.flow.json` or `<name>.preset.yaml`. `null` when none exists.\n */\nexport function findAssetManifestFile(dir: string, kind: string, name: string): string | null {\n  const candidates: string[] = [];\n  if (kind === \"skill\") candidates.push(\"SKILL.md\");\n  else if (kind === \"agent\") candidates.push(\"agent.yaml\", \"AGENT.md\");\n  else if (kind === \"contract\") candidates.push(\"CONTRACT.md\");\n  else if (kind === \"prompt\") candidates.push(`${name}.prompt.md`);\n  else if (kind === \"flow\") candidates.push(`${name}.flow.yaml`, `${name}.flow.json`);\n  else if (kind === \"preset\") candidates.push(`${name}.preset.yaml`);\n  for (const c of candidates) {\n    const file = path.join(dir, c);\n    if (fs.existsSync(file)) return file;\n  }\n  // A single prompt/flow/preset file whose name differs from the entry name.\n  const suffix =\n    kind === \"prompt\"\n      ? \".prompt.md\"\n      : kind === \"flow\"\n        ? \".flow.yaml\"\n        : kind === \"preset\"\n          ? \".preset.yaml\"\n          : null;\n  if (suffix && fs.existsSync(dir)) {\n    const matches = fs.readdirSync(dir).filter((f) => f.endsWith(suffix));\n    if (matches.length === 1) return path.join(dir, matches[0]);\n  }\n  return null;\n}\n\n/**\n * The prompt text of a manifest file, as {@link checkAssetManifest} wants it: the\n * markdown body of a `.md` marker (`SKILL.md`, `AGENT.md`, …), the `SOUL.md` next to\n * an `agent.yaml` agent, `undefined` for every other YAML manifest.\n *\n * @param file Absolute path of the manifest file.\n * @param text The file's content.\n */\nexport function readAssetBody(file: string, text: string): string | undefined {\n  if (file.endsWith(\".md\")) return parseFrontmatter(text).body;\n  if (path.basename(file) !== \"agent.yaml\") return undefined;\n  const soul = path.join(path.dirname(file), \"SOUL.md\");\n  return fs.existsSync(soul) ? fs.readFileSync(soul, \"utf8\").trim() : undefined;\n}\n\n/**\n * The {@link checkAsset} errors of one manifest file on disk — what `library index`\n * asks of each asset before it writes it into the manifest. A file that cannot be\n * read or parsed yields none: the parse failure is reported by whoever owns it.\n *\n * @param file Absolute path of the manifest file.\n * @param kind Asset kind of the manifest.\n * @param registry The kind registry that owns each kind's manifest schema.\n */\nexport function checkAssetFile(\n  file: string,\n  kind: string,\n  registry: IAssetKindRegistry,\n): AssetFinding[] {\n  let text: string;\n  try {\n    text = fs.readFileSync(file, \"utf8\");\n  } catch {\n    return [];\n  }\n  const res = parseManifestFile(file, text);\n  if (!res.ok) return [];\n  return checkAsset(\n    kind,\n    res.data,\n    readAssetBody(file, text),\n    path.basename(path.dirname(file)),\n    registry,\n  ).errors;\n}\n"]}

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* `skaile source manifest …` — curated `skaile.manifest.yaml` lifecycle for a\n * source you do NOT own. `init` generates a curated manifest from a discovery\n * run and stores it OUTSIDE the source, under the local store catalog\n * (`~/.skaile/store/manifests/<slug>.yaml`); `edit` opens it in `$EDITOR` and\n * re-validates on save. `source add`/`sync` then apply it as a read overlay\n * (see `source.ts` `refreshManifestCache`).\n *\n * `rebuild` refreshes a curated manifest after an upstream change (merge by\n * default — curation is sacred; `--overwrite` re-scans). `verify` is a\n * read-only integrity check (paths, declared hashes, schema, dep refs).\n * `publish`/`propose`/`yank` remain stubs — they need the store publish\n * endpoint (`POST /sources/<id>/manifest`), which lands in a follow-up.\n *\n * @docLink cli/commands/source#manifest\n */\n\nimport { spawnSync } from \"node:child_process\";\nimport { existsSync, readFileSync, writeFileSync } from \"node:fs\";\nimport * as path from \"node:path\";\nimport {\n  type AssetEntry,\n  decodeSkaileManifest,\n  encodeSkaileManifest,\n  findWorkspaceRoot,\n  parseAssetRef,\n  resolveSourcePublisher,\n  type SkPublishManifest,\n  type SourceEntry,\n  sourceCacheKey,\n  sourceShortName,\n  storeManifestSlug,\n  workspaceConfigFilename,\n} from \"@skaile/workspaces/core\";\nimport { computeDeterministicHash, discoverAssetsInTree } from \"@skaile/workspaces/discovery\";\nimport { getStoreManifestsDir, writeCuratedManifest } from \"@skaile/workspaces/library\";\nimport type { Command } from \"commander\";\nimport { logErr, logInfo, logOk, logWarn, S } from \"../helpers.ts\";\nimport { getKindRegistry } from \"../open-registry.ts\";\nimport {\n  ensureClone,\n  normalizeSourceUrl,\n  readProjectSources,\n  sourceClonePath,\n  sourceMatchesKey,\n} from \"./source.ts\";\n\nconst NOT_WIRED_MSG =\n  \"`skaile source manifest *` is scaffolded but not yet wired. \" +\n  \"Server-side endpoint (`POST /sources/<id>/manifest`) lands in a follow-up PR.\";\n\nfunction notWired(verb: string): never {\n  logErr(`${NOT_WIRED_MSG} (verb: source manifest ${verb})`);\n  process.exit(2);\n}\n\n/**\n * Resolve a `source manifest` argument into a `{ url, slug, dest }` triple.\n *\n * Resolution order:\n *   1. A key matching an already-registered project source (stored URL, cache\n *      key, or short slug).\n *   2. A collision-free **store slug** (`<host>__<owner>__<repo>`) whose\n *      manifest already exists at `~/.skaile/store/manifests/<arg>.yaml`. This\n *      MUST be tried before bare-name expansion: a bare name like `cli` would\n *      otherwise expand (via `normalizeSourceUrl`) to the skaile-ai org and a\n *      DIFFERENT slug than the one `init` wrote (e.g. `larksuite`). The slug is\n *      the exact identifier `init`'s next-step hint prints back.\n *   3. Otherwise a git URL / `owner/repo` / bare name via `normalizeSourceUrl`.\n *\n * The clone dir is the same URL-keyed cache `source add` uses.\n */\nexport function resolveSourceArg(\n  arg: string,\n  projectDir: string,\n): { url: string; slug: string; dest: string; manifestFile: string } {\n  const root = findWorkspaceRoot(projectDir);\n  const registered: SourceEntry[] = root\n    ? readProjectSources(path.join(root, workspaceConfigFilename()))\n    : [];\n  const match = registered.find((e) => sourceMatchesKey(e, arg));\n  const bySlug = !match ? resolveByStoreSlug(arg) : undefined;\n  const url = match ? match.url : (bySlug?.url ?? normalizeSourceUrl(arg));\n  const slug = sourceShortName(url); // human-facing label\n  const dest = sourceClonePath(sourceCacheKey(url));\n  return { url, slug, dest, manifestFile: bySlug?.manifestFile ?? storeManifestPath(url) };\n}\n\n/**\n * When `arg` is a bare store slug (`<host>__<owner>__<repo>`) whose curated\n * manifest already exists on disk, recover the source URL from the slug and\n * point at that manifest file directly. Returns `undefined` when the arg isn't\n * a slug or has no manifest yet (fall back to URL normalization).\n */\nfunction resolveByStoreSlug(arg: string): { url: string; manifestFile: string } | undefined {\n  // A slug is our own encoding — no path/URL sigils, at least the `<host>__…`\n  // separator. Anything URL/owner-repo shaped is not a slug.\n  if (!/^[\\w.-]+__[\\w.-]+/.test(arg) || /[/:\\\\]/.test(arg)) return undefined;\n  const manifestFile = path.join(getStoreManifestsDir(), `${arg}.yaml`);\n  if (!existsSync(manifestFile)) return undefined;\n  // `<host>__<owner>__<repo>` → `https://<host>/<owner>/<repo>` — good enough to\n  // key the clone dir + re-derive the same slug; the manifest file is what edit\n  // actually opens.\n  const [host, owner, repo] = arg.split(\"__\");\n  const url = host && owner && repo ? `https://${host}/${owner}/${repo}` : arg;\n  return { url, manifestFile };\n}\n\n/**\n * Absolute path to a source's curated store manifest. Keyed by the\n * collision-free {@link storeManifestSlug} (`<host>__<owner>__<repo>`) so\n * `orgA/cli` and `orgB/cli` don't share `cli.yaml`.\n */\nfunction storeManifestPath(url: string): string {\n  return path.join(getStoreManifestsDir(), `${storeManifestSlug(url)}.yaml`);\n}\n\n/**\n * Directory-name segments that mark a test-fixture tree. `init`/`rebuild` drop\n * any asset whose repo-relative root contains one of these as an exact path\n * SEGMENT. Repos routinely ship fixture \"skills\" under such dirs (e.g.\n * `scripts/skill-format-check/tests`, `internal/qualitygate/skillscan/testdata/skills/lark-demo`)\n * that are not real, publishable assets.\n */\nconst TEST_FIXTURE_SEGMENTS = new Set([\n  \"tests\",\n  \"test\",\n  \"__tests__\",\n  \"testdata\",\n  \"fixtures\",\n  \"__fixtures__\",\n]);\n\n/**\n * True when an asset's repo-relative `root` sits under a test-fixture directory\n * (see {@link TEST_FIXTURE_SEGMENTS}). Conservative, not repo-specific — finer\n * curation (keeping a genuine fixture asset) stays the user's job via `edit`.\n * `init`/`rebuild`-path only; the general discovery walk (`source add`) is\n * untouched.\n */\nfunction isTestFixtureAsset(relativePath: string): boolean {\n  const segments = relativePath.replace(/\\\\/g, \"/\").split(\"/\");\n  return segments.some((s) => TEST_FIXTURE_SEGMENTS.has(s));\n}\n\n/**\n * `source manifest init <src>` — clone (if needed), run discovery, and write a\n * curated `skaile.manifest.yaml` to `~/.skaile/store/manifests/<slug>.yaml`.\n */\nasync function runInit(\n  arg: string,\n  opts: { projectDir: string; publisher?: string; dev?: boolean; force?: boolean },\n): Promise<void> {\n  const projectDir = path.resolve(opts.projectDir);\n  const { url, dest, manifestFile: target } = resolveSourceArg(arg, projectDir);\n\n  if (existsSync(target) && !opts.force) {\n    logWarn(\n      `A curated manifest already exists at ${S.dim(target)}. ` +\n        \"Edit it with `skaile source manifest edit`, refresh it after an upstream \" +\n        \"change with `skaile source manifest rebuild`, or pass --force to regenerate.\",\n    );\n    return;\n  }\n\n  const entry: SourceEntry = { url };\n  ensureClone(entry);\n\n  const { assets, errors } = discoverCuratableAssets(dest, opts.dev ?? false);\n\n  const publisher = opts.publisher ?? resolveSourcePublisher(dest) ?? sourceShortName(url);\n\n  const written = writeCuratedManifest({\n    manifestFile: target,\n    publisher,\n    assets,\n    force: opts.force,\n    // Init: every asset inherits the top-level repo `publisher`. Do NOT stamp a\n    // per-asset publisher — glob discovery here runs without the resolved\n    // publisher, so each DiscoveredAsset.publisher is only the clone directory\n    // name, which would clobber the intended org/`--publisher` default with\n    // junk per-asset overrides.\n    inheritPublisher: true,\n  });\n\n  if (!written.wrote) {\n    logWarn(\n      `Curated manifest already exists at ${S.dim(target)} — not overwritten. ` +\n        \"Pass --force to regenerate.\",\n    );\n    return;\n  }\n\n  logOk(`Wrote curated manifest with ${written.assetCount} assets to ${S.dim(target)}.`);\n  // Echo the EXACT <src> the user passed so the printed commands actually run.\n  // A bare short name would mis-resolve through `normalizeSourceUrl` (→ the\n  // skaile-ai org, wrong slug); the original arg is what `resolveSourceArg`\n  // maps back to this same manifest.\n  logInfo(\n    `Edit it with \\`skaile source manifest edit ${arg}\\`, then ` +\n      `\\`skaile source add ${arg}\\` to consume it.`,\n  );\n  if (errors.length > 0) {\n    logWarn(`${errors.length} discovery error(s) — inspect the manifest before consuming.`);\n  }\n}\n\n/**\n * Run discovery over a clone and drop the test-fixture assets (see\n * {@link isTestFixtureAsset}). Shared by `init` and `rebuild` so both paths\n * produce an identical inventory from the same tree.\n */\nfunction discoverCuratableAssets(\n  dest: string,\n  includeDev: boolean,\n): { assets: ReturnType<typeof discoverAssetsInTree>[\"assets\"]; errors: string[] } {\n  const result = discoverAssetsInTree(dest, {\n    registry: getKindRegistry(),\n    includeDev,\n  });\n  const assets = result.assets.filter((a) => !isTestFixtureAsset(a.relativePath));\n  return { assets, errors: result.errors.map((e) => `${e.path}: ${e.error}`) };\n}\n\n/**\n * Best-effort `git pull --ff-only` on an existing clone. Never throws: a pull\n * failure (offline, diverged, detached) is warned and the caller continues with\n * the clone as-is.\n */\nfunction pullCloneFfOnly(dest: string): void {\n  const res = spawnSync(\"git\", [\"-C\", dest, \"pull\", \"--ff-only\"], { stdio: \"pipe\" });\n  if (res.status !== 0) {\n    logWarn(\n      \"git pull --ff-only failed — continuing with the existing clone \" +\n        \"(it may be behind upstream).\",\n    );\n  }\n}\n\n/**\n * Repo-relative `root` path for a manifest asset entry — the merge match key\n * between an existing curated entry and a freshly-discovered asset. `root:`\n * entries use their declared path; a `files:`-only entry (rare for a curated\n * sidecar) falls back to the entry's dirname of the first file, else the name.\n */\nfunction entryRootKey(entry: AssetEntry): string {\n  if (entry.root) return entry.root.replace(/\\\\/g, \"/\").replace(/\\/+$/, \"\");\n  const files = entry.files;\n  if (files && files.length > 0) {\n    const first = typeof files[0] === \"string\" ? files[0] : files[0].path;\n    const dir = path.posix.dirname(first.replace(/\\\\/g, \"/\"));\n    return dir === \".\" ? entry.name : dir;\n  }\n  return entry.name;\n}\n\n/** Repo-relative `root` path a discovered asset maps to (matches init's writer). */\nfunction discoveredRootKey(relativePath: string): string {\n  const dir = path.posix.dirname(relativePath.replace(/\\\\/g, \"/\"));\n  return dir === \".\" ? path.posix.basename(relativePath.replace(/\\\\/g, \"/\")) : dir;\n}\n\n/** Human ref for reporting: `kind:name`. */\nfunction entryRef(entry: AssetEntry): string {\n  return `${entry.kind}:${entry.name}`;\n}\n\n/**\n * `source manifest rebuild <src>` — refresh a curated manifest after the\n * upstream repo changed. MERGE is the default (curation is sacred); `--overwrite`\n * re-scans from scratch with `init --force` semantics.\n *\n * Merge algorithm (match by repo-relative `root` path):\n *   - Existing entries whose root is STILL discovered → KEPT verbatim (all\n *     hand-edits preserved).\n *   - Existing entries whose root is GONE upstream → DROPPED (reported).\n *   - Freshly-discovered assets not already in the manifest → NOT auto-added,\n *     only REPORTED (a curated foreign sidecar must not silently absorb new\n *     upstream skills). An asset the curator deliberately dropped stays dropped\n *     because it is neither in the existing manifest nor re-added here.\n */\nasync function runRebuild(\n  arg: string,\n  opts: { projectDir: string; publisher?: string; dev?: boolean; overwrite?: boolean },\n): Promise<void> {\n  const projectDir = path.resolve(opts.projectDir);\n  const { url, dest, slug, manifestFile: target } = resolveSourceArg(arg, projectDir);\n\n  if (!existsSync(target)) {\n    logErr(\n      `No curated manifest for \"${slug}\" at ${S.dim(target)} — ` +\n        \"run `skaile source manifest init` first.\",\n    );\n    process.exit(1);\n  }\n\n  // Update the clone: clone if absent, else pull --ff-only (best-effort).\n  const entry: SourceEntry = { url };\n  const cloned = ensureClone(entry);\n  if (!cloned) pullCloneFfOnly(dest);\n\n  const { assets: freshAssets, errors } = discoverCuratableAssets(dest, opts.dev ?? false);\n\n  if (opts.overwrite) {\n    logWarn(\n      \"--overwrite: replacing the curated manifest with a full fresh inventory. \" +\n        \"All hand-curation (dropped assets, per-asset edits) is discarded.\",\n    );\n    const publisher = opts.publisher ?? resolveSourcePublisher(dest) ?? sourceShortName(url);\n    const written = writeCuratedManifest({\n      manifestFile: target,\n      publisher,\n      assets: freshAssets,\n      force: true,\n      inheritPublisher: true,\n    });\n    logOk(\n      `Rebuilt curated manifest with ${written.assetCount} assets to ${S.dim(target)} (overwrite).`,\n    );\n    if (errors.length > 0) {\n      logWarn(`${errors.length} discovery error(s) — inspect the manifest before consuming.`);\n    }\n    return;\n  }\n\n  // MERGE (default). `--publisher` only applies to the full re-derive path.\n  if (opts.publisher) {\n    logWarn(\n      \"--publisher is ignored in merge mode (the curated publisher is preserved). \" +\n        \"Use --overwrite to re-derive the publisher from a full re-scan.\",\n    );\n  }\n\n  // Read the existing curated manifest and keep it as the base.\n  const { manifest: existing } = decodeSkaileManifest(readFileSync(target, \"utf-8\"));\n  const existingEntries = existing.assets ?? [];\n\n  // Index fresh discovery by repo-relative root path.\n  const freshByRoot = new Map<string, (typeof freshAssets)[number]>();\n  for (const a of freshAssets) freshByRoot.set(discoveredRootKey(a.relativePath), a);\n\n  const kept: AssetEntry[] = [];\n  const dropped: string[] = [];\n  for (const e of existingEntries) {\n    if (freshByRoot.has(entryRootKey(e))) kept.push(e);\n    else dropped.push(entryRef(e));\n  }\n\n  // Fresh assets not already curated → report as available, do NOT add.\n  const existingRoots = new Set(existingEntries.map(entryRootKey));\n  const newlyAvailable: string[] = [];\n  for (const a of freshAssets) {\n    if (!existingRoots.has(discoveredRootKey(a.relativePath))) {\n      newlyAvailable.push(`${a.kind}:${a.name}`);\n    }\n  }\n\n  const changed = dropped.length > 0;\n  if (dropped.length > 0) {\n    logWarn(`removed (gone upstream): ${dropped.sort().join(\", \")}`);\n  }\n  if (newlyAvailable.length > 0) {\n    logInfo(\n      `${newlyAvailable.length} new upstream asset(s) available (not added): ` +\n        `${newlyAvailable.sort().join(\", \")} — add with \\`skaile source manifest edit ${arg}\\` if wanted`,\n    );\n  }\n\n  if (!changed) {\n    logOk(\"already up to date\");\n    if (errors.length > 0) {\n      logWarn(`${errors.length} discovery error(s) — inspect the source before re-consuming.`);\n    }\n    return;\n  }\n\n  const merged: SkPublishManifest = { ...existing, assets: kept };\n  writeFileSync(target, encodeSkaileManifest(merged), \"utf-8\");\n  logOk(\n    `Rebuilt curated manifest: kept ${kept.length}, dropped ${dropped.length} → ${S.dim(target)}.`,\n  );\n  if (errors.length > 0) {\n    logWarn(`${errors.length} discovery error(s) — inspect the source before re-consuming.`);\n  }\n}\n\n/**\n * `source manifest verify <src>` — READ-ONLY integrity check of a curated\n * manifest against its clone. Writes nothing. Exit 0 when no errors; with\n * `--strict`, any warning also forces a nonzero exit.\n *\n * Per-asset checks:\n *   - `root`/`files` paths still exist upstream (missing → error).\n *   - A declared `sha256` recomputes to the same deterministic hash (mismatch → error).\n *   - Schema decode diagnostics map to errors/warnings.\n *   - Dependency refs parse via `parseAssetRef` (malformed → warning).\n */\nasync function runVerify(\n  arg: string,\n  opts: { projectDir: string; strict?: boolean },\n): Promise<void> {\n  const projectDir = path.resolve(opts.projectDir);\n  const { url, dest, slug, manifestFile: target } = resolveSourceArg(arg, projectDir);\n\n  if (!existsSync(target)) {\n    logErr(\n      `No curated manifest for \"${slug}\" at ${S.dim(target)} — ` +\n        \"run `skaile source manifest init` first.\",\n    );\n    process.exit(1);\n  }\n\n  // Ensure a clone exists to verify paths/hashes against (best-effort; no pull).\n  ensureClone({ url });\n\n  const text = readFileSync(target, \"utf-8\");\n  const { manifest, diagnostics } = decodeSkaileManifest(text);\n\n  const errors: string[] = [];\n  const warnings: string[] = [];\n\n  // Schema diagnostics from the decoder.\n  for (const d of diagnostics) {\n    const line = `${d.code}: ${d.message}`;\n    if (d.severity === \"error\") errors.push(line);\n    else warnings.push(line);\n  }\n\n  const assets = manifest.assets ?? [];\n  for (const entry of assets) {\n    const ref = entryRef(entry);\n\n    // Path existence: `root` dir and/or each `files[]` path.\n    const relPaths: string[] = [];\n    if (entry.root) relPaths.push(entry.root);\n    if (entry.files) {\n      for (const f of entry.files) relPaths.push(typeof f === \"string\" ? f : f.path);\n    }\n    if (relPaths.length === 0) relPaths.push(entry.name);\n    for (const rel of relPaths) {\n      if (!existsSync(path.join(dest, rel))) {\n        errors.push(`${ref}: path not found upstream: ${rel}`);\n      }\n    }\n\n    // Declared sha256 → recompute + compare, but ONLY for granular `files:`\n    // entries. Discovery (`discover-manifest.ts`) anchors a `files:`-only entry\n    // at the REPO ROOT and hashes the files VERBATIM as repo-relative strings\n    // (the path is folded into the digest), so verify must hash the same way:\n    // `assetRoot = dest`, files kept repo-relative — NOT rebased onto the root.\n    // A `root:` entry cannot be verified this way (discovery hashes only the\n    // per-kind filtered set, not the whole-dir walk), and the writer never emits\n    // sha256 for `root:` entries, so skip the hash check for them.\n    if (entry.sha256) {\n      if (entry.files && entry.files.length > 0) {\n        const hashFiles = entry.files.map((f) =>\n          (typeof f === \"string\" ? f : f.path).replace(/\\\\/g, \"/\"),\n        );\n        const actual = computeDeterministicHash(dest, hashFiles);\n        if (actual !== entry.sha256) {\n          errors.push(\n            `${ref}: sha256 mismatch (declared ${entry.sha256.slice(0, 12)}…, got ${actual.slice(0, 12)}…)`,\n          );\n        }\n      } else {\n        warnings.push(\n          `${ref}: declared sha256 on a root:-mode entry is not verifiable (discovery hashes only the per-kind filtered set) — skipped`,\n        );\n      }\n    }\n\n    // Dependency refs parse.\n    for (const dep of entry.dependencies ?? []) {\n      try {\n        parseAssetRef(dep);\n      } catch (err) {\n        warnings.push(\n          `${ref}: malformed dependency \"${dep}\": ${err instanceof Error ? err.message : String(err)}`,\n        );\n      }\n    }\n  }\n\n  for (const w of warnings) logWarn(w);\n  for (const e of errors) logErr(e);\n\n  if (errors.length === 0) {\n    logOk(`verified ${assets.length} asset(s).`);\n  } else {\n    logErr(`${errors.length} issue(s).`);\n  }\n\n  const failStrict = opts.strict && warnings.length > 0;\n  if (errors.length > 0 || failStrict) process.exit(1);\n}\n\n/**\n * Split a `$VISUAL`/`$EDITOR` value into `{ command, args }` and append the file\n * as the final arg. The env value is a full command line, not a bare binary —\n * `EDITOR=\"code --wait\"` must spawn `code` with `[\"--wait\", <file>]`, and\n * `EDITOR=code` (which returns before save) is the user's problem, not ours.\n * A whitespace split covers the common editors (`code --wait`, `code -w`,\n * `subl -w`, `vi`); paths with embedded spaces are not supported (rare for an\n * editor binary and out of scope). Falls back to `vi` when unset/empty.\n *\n * @docLink cli/commands/source#manifest-edit\n */\nexport function resolveEditorCommand(\n  editorEnv: string | undefined,\n  target: string,\n): { command: string; args: string[] } {\n  const parts = (editorEnv ?? \"\").trim().split(/\\s+/).filter(Boolean);\n  const [command, ...rest] = parts.length > 0 ? parts : [\"vi\"];\n  return { command: command as string, args: [...rest, target] };\n}\n\n/** Minimal spawn contract runEdit needs — lets tests inject a fake. */\ntype SpawnLike = (\n  command: string,\n  args: string[],\n  opts: { stdio: \"inherit\" },\n) => { status: number | null };\n\n/**\n * `source manifest edit <src>` — open the curated store manifest in `$EDITOR`\n * and re-validate on save. Warnings are surfaced but never hard-fail.\n *\n * `spawn` is injectable so tests can assert the argv without launching a real\n * editor; production passes the default `spawnSync`.\n */\nexport function runEdit(\n  arg: string,\n  opts: { projectDir: string },\n  spawn: SpawnLike = spawnSync as unknown as SpawnLike,\n): void {\n  const projectDir = path.resolve(opts.projectDir);\n  const { slug, manifestFile: target } = resolveSourceArg(arg, projectDir);\n\n  if (!existsSync(target)) {\n    logErr(\n      `No curated manifest for \"${slug}\" at ${target}. ` +\n        \"Run `skaile source manifest init` first.\",\n    );\n    process.exit(1);\n  }\n\n  const { command, args } = resolveEditorCommand(process.env.VISUAL || process.env.EDITOR, target);\n  const res = spawn(command, args, { stdio: \"inherit\" });\n  if (res.status !== 0 && res.status !== null) {\n    logErr(`Editor exited with status ${res.status}.`);\n    process.exit(1);\n  }\n\n  // Re-validate the saved file; surface diagnostics as warnings, don't hard-fail.\n  const { diagnostics } = decodeSkaileManifest(readFileSync(target, \"utf-8\"));\n  const errors = diagnostics.filter((d) => d.severity === \"error\");\n  const warnings = diagnostics.filter((d) => d.severity !== \"error\");\n  if (errors.length > 0) {\n    for (const d of errors) logErr(`${d.code}: ${d.message}`);\n    logWarn(\"Manifest has errors — fix them before `skaile source add` will consume it.\");\n  } else if (warnings.length > 0) {\n    for (const d of warnings) logWarn(`${d.code}: ${d.message}`);\n    logOk(\"Saved (with warnings).\");\n  } else {\n    logOk(\"Saved.\");\n  }\n}\n\n/**\n * Append the `manifest` sub-tree to a `source` command.\n *\n * Called from `makeSourceCommand()` in `source.ts`.\n */\nexport function addSourceManifestCommands(src: Command): void {\n  // enablePositionalOptions so options on the leaf verb (`source manifest init\n  // --publisher …`) route to that verb instead of being rejected by `manifest`.\n  const manifest = src\n    .command(\"manifest\")\n    .description(\"Curated manifest lifecycle for a source\")\n    .enablePositionalOptions();\n\n  manifest\n    .command(\"init <src>\")\n    .description(\"Generate a curated manifest for a source (stored in the local store catalog)\")\n    .option(\"-C, --project-dir <dir>\", \"Project directory\", process.cwd())\n    .option(\"--publisher <name>\", \"Override the publisher (default: source's GitHub org)\")\n    .option(\"--dev\", \"Include assets under the source's dev_paths\", false)\n    .option(\"--force\", \"Overwrite an existing curated manifest\", false)\n    .action((arg, opts) => runInit(arg, opts));\n\n  manifest\n    .command(\"edit <src>\")\n    .description(\"Open the curated manifest in $EDITOR and re-validate on save\")\n    .option(\"-C, --project-dir <dir>\", \"Project directory\", process.cwd())\n    .action((arg, opts) => runEdit(arg, opts));\n\n  manifest\n    .command(\"rebuild <src>\")\n    .description(\n      \"Refresh a curated manifest after an upstream change (merge by default: \" +\n        \"keeps curation, drops assets gone upstream, reports new ones without adding)\",\n    )\n    .option(\"-C, --project-dir <dir>\", \"Project directory\", process.cwd())\n    .option(\"--publisher <name>\", \"Override the publisher (--overwrite only)\")\n    .option(\"--dev\", \"Include assets under the source's dev_paths\", false)\n    .option(\"--overwrite\", \"Discard curation and re-scan the full inventory\", false)\n    .action((arg, opts) => runRebuild(arg, opts));\n\n  manifest\n    .command(\"verify <src>\")\n    .description(\"Verify hashes, deps, and schema (read-only)\")\n    .option(\"-C, --project-dir <dir>\", \"Project directory\", process.cwd())\n    .option(\"--strict\", \"Fail on advisory checks (warnings force a nonzero exit)\", false)\n    .action((arg, opts) => runVerify(arg, opts));\n\n  manifest\n    .command(\"publish <src>\")\n    .description(\"Push the curated sidecar manifest and publish it to the store\")\n    .option(\"-C, --project-dir <dir>\", \"Project directory\", process.cwd())\n    .option(\"--as <namespace>\", \"Publisher namespace (default: your store username)\")\n    .option(\"--sidecar-repo <url>\", \"Public GitHub repo you own to hold the curated manifest\")\n    .option(\"--ref <gitref>\", \"Foreign source ref to ingest (branch/sha; default: main)\")\n    .option(\"--dry-run\", \"Print the publish plan without pushing or calling the store\", false)\n    .action(async (arg, opts) => {\n      const { runPublish } = await import(\"./source-manifest-publish.ts\");\n      await runPublish(arg, opts);\n    });\n\n  manifest\n    .command(\"propose <src>\")\n    .description(\"Open a PR to upstream with the sidecar manifest\")\n    .action(() => notWired(\"propose\"));\n\n  manifest\n    .command(\"yank <src>\")\n    .description(\"Retract the source's published assets from the store\")\n    .option(\"-C, --project-dir <dir>\", \"Project directory\", process.cwd())\n    .option(\"--asset <ref>\", \"Yank only the asset matching this ref/name\")\n    .action(async (arg, opts) => {\n      const { runYank } = await import(\"./source-manifest-publish.ts\");\n      await runYank(arg, opts);\n    });\n}\n","/**\n * `skaile source …` — manage github sources for the current project.\n *\n * A *source* is a third-party github repo of AI assets. The project's\n * `skaile.yaml` `sources:` array is the source of truth for which sources\n * this project uses. The clone itself lives at\n * `<cache root>/sources/<host>/<owner>/<repo>/` (`~/.skaile/cache` unless `SKAILE_HOME` or\n * `SKAILE_CACHE_DIR` moves it; machine-global cache, shared across projects, URL-keyed so\n * cross-org repos never collide), and the manifest is mirrored into `<skaile home>/index.db`\n * (machine-global manifest cache).\n *\n * @docLink cli/commands/source\n */\n\nimport { spawnSync } from \"node:child_process\";\nimport { existsSync, mkdirSync, renameSync, rmSync } from \"node:fs\";\nimport * as path from \"node:path\";\nimport {\n  attachToBranch,\n  findWorkspaceRoot,\n  getGlobalCacheDir,\n  globalCacheRoot,\n  legacySourceCacheKey,\n  type SourceEntry,\n  sourceCacheKey,\n  sourceShortName,\n  WorkspaceYamlEditor,\n  workspaceConfigFilename,\n} from \"@skaile/workspaces/core\";\nimport { curatedManifestOverlay, LocalCatalogSource } from \"@skaile/workspaces/library\";\nimport * as p from \"@clack/prompts\";\nimport { Command } from \"commander\";\nimport { logErr, logInfo, logOk, logWarn, S } from \"../helpers.ts\";\nimport { openLibraryManager } from \"../open-library.ts\";\nimport { getKindRegistry } from \"../open-registry.ts\";\nimport { addSourceManifestCommands } from \"./source-manifest.ts\";\n\n/**\n * Clone dir for one source cache key (`<host>/<owner>/<repo>`). Exported for the\n * cache-path regression test. Callers pass `sourceCacheKey(url)`.\n */\nexport function sourceClonePath(key: string): string {\n  return path.join(getGlobalCacheDir(), key);\n}\n\nconst SKAILE_MANIFEST_FILENAME = \"skaile.manifest.yaml\";\nconst LEGACY_SOURCE_CONFIG_FILENAME = \".skaile-source.yaml\";\n\n/**\n * Whether a manifest-cache refresh actually failed to index something. Keyed on\n * `errors`, NOT on `assetsUpdated < assetsFound`: the discovery walk counts\n * presets (and other intentionally-not-cataloged kinds) toward `assetsFound` but\n * never upserts them, so a source shipping a `.preset.yaml` would otherwise read\n * as a partial failure — false `! N asset(s) failed to index` + exit 1 — with\n * zero real errors.\n */\nexport function indexingHadFailures(result: { errors: string[] }): boolean {\n  return result.errors.length > 0;\n}\n\n/**\n * A clone that ships only the legacy `.skaile-source.yaml` (no\n * `skaile.manifest.yaml`) has its declared `publisher_default` silently ignored\n * — discovery only reads `skaile.manifest.yaml`, so publisher resolution falls\n * back to the first path segment. Surface a hint so the author can fix it.\n */\nexport function legacySourceConfigHint(dest: string): string | undefined {\n  const hasLegacy = existsSync(path.join(dest, LEGACY_SOURCE_CONFIG_FILENAME));\n  const hasManifest = existsSync(path.join(dest, SKAILE_MANIFEST_FILENAME));\n  if (hasLegacy && !hasManifest) {\n    return (\n      `This source ships a legacy ${LEGACY_SOURCE_CONFIG_FILENAME} but no ` +\n      `${SKAILE_MANIFEST_FILENAME}; its declared publisher is ignored and assets ` +\n      `are published under their first path segment. Add a ${SKAILE_MANIFEST_FILENAME} ` +\n      `(\\`skaile source manifest init\\`) to set the publisher and asset inventory.`\n    );\n  }\n  return undefined;\n}\n\n/**\n * Normalize a `source add` argument into a clonable git URL. Full URLs and\n * scp-style (`git@host:…`) specs pass through unchanged; an `owner/repo`\n * shorthand and a bare repo name expand to GitHub over SSH — a bare name\n * defaults to the `skaile-ai` org (`git@github.com:skaile-ai/<name>.git`).\n */\nexport function normalizeSourceUrl(input: string): string {\n  const s = input.trim();\n  if (/^(?:https?|git|ssh|file):\\/\\//.test(s) || /^git@/.test(s)) return s;\n  const repo = s.replace(/\\.git$/, \"\");\n  if (/^[\\w.-]+\\/[\\w.-]+$/.test(repo)) return `git@github.com:${repo}.git`;\n  if (/^[\\w.-]+$/.test(repo)) return `git@github.com:skaile-ai/${repo}.git`;\n  return s;\n}\n\n/**\n * Match a stored source against a user-supplied key. Mirrors the shortcut\n * expansion `source add` applies (`normalizeSourceUrl`) so any form that `add`\n * accepted — bare name, `owner/repo`, `.git`-suffixed, full URL — also resolves\n * at `sync`/`show`/`remove` time, not just the raw stored URL or derived slug.\n */\nexport function sourceMatchesKey(entry: SourceEntry, key: string): boolean {\n  if (entry.url === key) return true;\n  if (sourceCacheKey(entry.url) === key || sourceShortName(entry.url) === key) return true;\n  return entry.url === normalizeSourceUrl(key);\n}\n\n/**\n * Name a source in output: its repo short name, or its clone-cache key when\n * another source in the project shares that short name (two `skillz` repos of\n * different owners). The key is unique per URL and `source show`/`remove` accept it.\n */\nexport function sourceLabel(entry: SourceEntry, all: readonly SourceEntry[]): string {\n  const short = sourceShortName(entry.url);\n  const shared = all.some((s) => s.url !== entry.url && sourceShortName(s.url) === short);\n  return shared ? sourceCacheKey(entry.url) : short;\n}\n\n/** Outcome of {@link resolveSource}. */\nexport type SourceResolution =\n  | { kind: \"one\"; entry: SourceEntry }\n  | { kind: \"ambiguous\"; entries: SourceEntry[] }\n  | { kind: \"none\" };\n\n/**\n * Pick the one source `key` names. Exact forms win over names: the stored URL,\n * then the cache key, then the repo short name or a `source add` shortcut. A\n * name that several sources share (`skillz` from two owners) is `ambiguous`\n * instead of silently picking the first.\n */\nexport function resolveSource(sources: readonly SourceEntry[], key: string): SourceResolution {\n  const tiers: ((s: SourceEntry) => boolean)[] = [\n    (s) => s.url === key,\n    (s) => sourceCacheKey(s.url) === key,\n    (s) => sourceShortName(s.url) === key || s.url === normalizeSourceUrl(key),\n  ];\n  for (const tier of tiers) {\n    const hits = sources.filter(tier);\n    if (hits.length === 1) return { kind: \"one\", entry: hits[0] };\n    if (hits.length > 1) return { kind: \"ambiguous\", entries: hits };\n  }\n  return { kind: \"none\" };\n}\n\nfunction exitAmbiguousSource(key: string, entries: readonly SourceEntry[]): never {\n  logErr(`\"${key}\" matches ${entries.length} sources; pass the URL of the one you mean:`);\n  for (const e of entries) console.error(`    ${e.url}`);\n  process.exit(1);\n}\n\n/**\n * git's stderr as one line: every line but the `hint:` advice and the\n * `From <url>` / ` * branch …` fetch progress, joined by spaces. Keeps the\n * cause (`fatal: '<path>' does not appear to be a git repository`).\n */\nfunction pullFailureReason(stderr: string): string {\n  return stderr\n    .split(\"\\n\")\n    .map((l) => l.trim())\n    .filter((l) => l !== \"\" && !/^(hint:|From |[*+=!-] )/.test(l))\n    .join(\" \");\n}\n\n/**\n * Find an already-registered source that maps to the same cache key as `url`\n * but is stored under a *different* URL string (e.g. the `.git`-suffixed or\n * scp form of the same remote). Two such entries would fight over one clone\n * dir, so `source add` rejects the ambiguity. Returns the colliding entry, or\n * `undefined` when the URL is unique or only matches an exact-string duplicate\n * (which `setSource` updates in place).\n */\nexport function findCacheKeyCollision(\n  sources: SourceEntry[],\n  url: string,\n): SourceEntry | undefined {\n  const key = sourceCacheKey(url);\n  return sources.find((s) => s.url !== url && sourceCacheKey(s.url) === key);\n}\n\nfunction requireProjectYamlPath(): string {\n  const root = findWorkspaceRoot(process.cwd());\n  if (!root) {\n    logErr(\n      \"No skaile.yaml found in the current directory or any parent. \" + \"Run `skaile init` first.\",\n    );\n    process.exit(1);\n  }\n  return path.join(root, workspaceConfigFilename());\n}\n\nexport function readProjectSources(yamlPath: string): SourceEntry[] {\n  if (!existsSync(yamlPath)) return [];\n  try {\n    return WorkspaceYamlEditor.load(yamlPath).getSources();\n  } catch (err) {\n    logErr(`Could not read ${yamlPath}: ${err instanceof Error ? err.message : String(err)}`);\n    process.exit(1);\n  }\n}\n\n/**\n * Clone the source if its clone directory does not yet exist. When `force` is\n * set, the existing clone is replaced by a fresh checkout. Returns true when a\n * clone happened. The cache slug is derived from the URL.\n *\n * A `--force` re-clone moves the old clone aside first and only deletes it once\n * the fresh clone succeeds — so a failed re-clone restores the previous clone\n * rather than leaving the source registered with no cache behind it.\n */\nexport function ensureClone(entry: SourceEntry, opts: { force?: boolean } = {}): boolean {\n  const dest = sourceClonePath(sourceCacheKey(entry.url));\n  let backup: string | undefined;\n  if (existsSync(dest)) {\n    if (!opts.force) return false;\n    backup = `${dest}.bak`;\n    rmSync(backup, { recursive: true, force: true });\n    renameSync(dest, backup);\n  }\n  mkdirSync(path.dirname(dest), { recursive: true });\n  const args = [\"clone\", entry.url, dest];\n  // `pin` may be a branch/tag; pass it as the clone branch when present.\n  if (entry.pin) args.splice(1, 0, \"--branch\", entry.pin);\n  const clone = spawnSync(\"git\", args, { stdio: \"inherit\" });\n  if (clone.status !== 0) {\n    if (backup) {\n      rmSync(dest, { recursive: true, force: true });\n      renameSync(backup, dest);\n    }\n    logErr(`git clone failed for ${entry.url}`);\n    process.exit(1);\n  }\n  if (backup) rmSync(backup, { recursive: true, force: true });\n  return true;\n}\n\n/**\n * Advance an existing clone with `git pull --ff-only`. `add` and\n * `install --locked` leave the shared clone on a detached HEAD at the locked\n * commit, where `git pull` refuses to run, so a detached clone is put back on\n * its branch first (the pin when it is a branch, else the remote's default).\n * An entry pinned to a tag or SHA has nothing to pull and counts as synced.\n * On failure `error` is one line: git's whole stderr minus `hint:` advice and fetch progress.\n */\nexport function pullSourceClone(\n  dest: string,\n  entry: SourceEntry,\n): { ok: true } | { ok: false; error: string } {\n  if (!attachToBranch(dest, entry.pin) && entry.pin) return { ok: true };\n  const pull = spawnSync(\"git\", [\"pull\", \"--ff-only\"], {\n    cwd: dest,\n    stdio: \"pipe\",\n    encoding: \"utf8\",\n  });\n  if (pull.status === 0) return { ok: true };\n  const reason = pullFailureReason(pull.stderr) || `git exited with status ${pull.status}`;\n  return { ok: false, error: `git pull failed: ${reason}` };\n}\n\n/**\n * Library name for a new source row: the repo short name, or `<owner>-<repo>`\n * (then `<host>-<owner>-<repo>`) when another library already holds that name.\n * Rows are found by clone path, never by this name: `orgA/repo` and\n * `orgB/repo` share the short name `repo`.\n */\nfunction sourceLibraryName(url: string, libs: readonly { name: string }[]): string {\n  const taken = new Set(libs.map((l) => l.name));\n  // A repo may be named `my.repo`; `addLibrary` only accepts `[A-Za-z0-9_-]`\n  // starting with a letter or digit, so every candidate is slugged first.\n  const flat = (s: string) => s.replace(/[^A-Za-z0-9_-]+/g, \"-\").replace(/^[-_]+/, \"\") || \"source\";\n  const short = flat(sourceShortName(url));\n  if (!taken.has(short)) return short;\n  const parts = sourceCacheKey(url).split(\"/\");\n  const candidates =\n    parts.length === 3\n      ? [flat(`${parts[1]}-${parts[2]}`), flat(`${parts[0]}-${parts[1]}-${parts[2]}`)]\n      : [];\n  for (const c of candidates) if (!taken.has(c)) return c;\n  let n = 2;\n  while (taken.has(`${short}-${n}`)) n++;\n  return `${short}-${n}`;\n}\n\n/**\n * Refresh the machine-global manifest cache for `entry` by running discovery\n * and upserting AssetDefinitions into `<skaile home>/index.db`. Creates the\n * libraries-table cache row if missing (ownership: reader = cache state).\n */\nasync function refreshManifestCache(\n  entry: SourceEntry,\n  includeDev = false,\n): Promise<{\n  assetsFound: number;\n  assetsUpdated: number;\n  errors: string[];\n  advisories: string[];\n}> {\n  const { manager, library, close } = await openLibraryManager();\n  try {\n    const dest = sourceClonePath(sourceCacheKey(entry.url));\n    const libs = await manager.listLibraries();\n    const existing = libs.find((l) => path.resolve(l.path) === path.resolve(dest));\n    // A clone made before the cache key gained its url hash sits at `<last segment>`.\n    // Its library row is this source's: point it at the new clone instead of adding a\n    // second row for the same source (`add` would warn \"exists in 2 libraries\").\n    const legacyKey = legacySourceCacheKey(entry.url);\n    const legacyDir = legacyKey ? path.resolve(sourceClonePath(legacyKey)) : undefined;\n    const legacyRow =\n      existing || !legacyDir\n        ? undefined\n        : libs.find((l) => path.resolve(l.path) === legacyDir && l.ownership === \"reader\");\n    if (legacyRow && legacyDir) {\n      await manager.updateLibrary(legacyRow.id, { path: dest });\n      logInfo(\n        `Moved the \"${legacyRow.name}\" library to the new clone ${dest}. ` +\n          `The old clone ${legacyDir} is no longer used and can be deleted.`,\n      );\n    }\n    const lib =\n      existing ??\n      legacyRow ??\n      (await manager.addLibrary({\n        name: sourceLibraryName(entry.url, libs),\n        path: dest,\n        backend: \"git\",\n        backendConfig: { url: entry.url, branch: entry.pin ?? \"main\", authHint: \"ssh\" },\n        ownership: \"reader\",\n      }));\n    // A `skaile source manifest init` curated manifest overrides the upstream repo's\n    // raw glob discovery; `asset install` rescans with the same overlay.\n    const catalog = new LocalCatalogSource(library, lib.id, dest, getKindRegistry(), {\n      sidecarManifestFile: curatedManifestOverlay(entry.url),\n    });\n    const result = await catalog.sync({ includeDev });\n    await library.syncSource(lib.id);\n    return result;\n  } finally {\n    close();\n  }\n}\n\n/**\n * Auto-sync hook for `skaile search` on an unsynced workspace. Clones/pulls and\n * re-indexes every source declared in the project's `skaile.yaml`, then returns\n * whether the manifest cache may have changed (caller re-queries on `true`).\n *\n * Unlike `source sync`, this degrades gracefully — a clone/pull/index failure is\n * logged and skipped (never `process.exit`) so a failed auto-sync falls back to\n * the \"run sync first\" hint rather than killing the search. Returns `false`\n * (silently, no announce) when no sources are declared. Callers must guard\n * air-gapped mode themselves — this always touches the network.\n */\nexport async function autoSyncForSearch(projectDir: string): Promise<boolean> {\n  const root = findWorkspaceRoot(projectDir);\n  if (!root) return false;\n  if (readProjectSources(path.join(root, workspaceConfigFilename())).length === 0) return false;\n\n  logInfo(\"sources not synced — syncing now…\");\n  const { synced } = await syncProjectSources(projectDir);\n  return synced > 0;\n}\n\n/**\n * Clone-or-pull every source declared in the project's `skaile.yaml`, then\n * refresh its manifest cache. Shared by `autoSyncForSearch` and `skaile update`\n * (the latter offers it behind a confirm) so a re-deploy can see upstream\n * commits — `update` re-deploys against the local source cache, which is\n * otherwise frozen at the commit captured when the source was first cloned.\n *\n * Graceful by design: a clone/pull/index failure for one source is logged and\n * skipped (never `process.exit`), so a single bad remote can't abort the run.\n * Existing clones are advanced with `git pull --ff-only` (no `--depth=1`, unlike\n * the installer's `pullRepo`, so it fast-forwards instead of tripping the\n * shallow-divergence path). Returns a count summary for the caller to report.\n */\nexport async function syncProjectSources(\n  projectDir: string,\n  opts: { dev?: boolean } = {},\n): Promise<{ total: number; synced: number; failed: number }> {\n  const root = findWorkspaceRoot(projectDir) ?? projectDir;\n  const sources = readProjectSources(path.join(root, workspaceConfigFilename()));\n  let synced = 0;\n  let failed = 0;\n  for (const entry of sources) {\n    const slug = sourceShortName(entry.url);\n    const dest = sourceClonePath(sourceCacheKey(entry.url));\n    try {\n      // Quiet git — the sync is a preparatory step; keep progress bars out of\n      // the foreground output (spinner / install result).\n      if (!existsSync(dest)) {\n        mkdirSync(path.dirname(dest), { recursive: true });\n        const args = [\"clone\", entry.url, dest];\n        if (entry.pin) args.splice(1, 0, \"--branch\", entry.pin);\n        const clone = spawnSync(\"git\", args, { stdio: \"ignore\" });\n        if (clone.status !== 0) {\n          logWarn(`${slug}: git clone failed, skipping.`);\n          failed++;\n          continue;\n        }\n      } else {\n        const pull = pullSourceClone(dest, entry);\n        if (!pull.ok) {\n          logErr(`${slug}: ${pull.error}`);\n          failed++;\n          continue;\n        }\n      }\n      const result = await refreshManifestCache(entry, opts.dev);\n      for (const err of result.errors) logWarn(`${slug}: ${err}`);\n      for (const advisory of result.advisories) logInfo(`${slug}: ${advisory}`);\n      synced++;\n    } catch (err) {\n      logWarn(`${slug}: sync failed — ${err instanceof Error ? err.message : String(err)}`);\n      failed++;\n    }\n  }\n  return { total: sources.length, synced, failed };\n}\n\n/**\n * Short names of the project's source clones that hold commits their upstream lacks.\n * `update --no-sync` still re-deploys from such a clone, so it reports them the way\n * `source sync` does. A clone without an upstream (detached at a pin) never counts.\n */\nexport function divergedSourceClones(projectDir: string): string[] {\n  const root = findWorkspaceRoot(projectDir) ?? projectDir;\n  const diverged: string[] = [];\n  for (const entry of readProjectSources(path.join(root, workspaceConfigFilename()))) {\n    const dest = sourceClonePath(sourceCacheKey(entry.url));\n    if (!existsSync(dest)) continue;\n    const ahead = spawnSync(\"git\", [\"-C\", dest, \"rev-list\", \"--count\", \"@{upstream}..HEAD\"], {\n      stdio: \"pipe\",\n      encoding: \"utf8\",\n    });\n    if (ahead.status === 0 && Number(ahead.stdout.trim()) > 0) {\n      diverged.push(sourceShortName(entry.url));\n    }\n  }\n  return diverged;\n}\n\n/** Remove the libraries-table cache row and (optionally) the clone bytes. */\nasync function dropManifestCache(url: string, purgeClone: boolean): Promise<void> {\n  const dest = sourceClonePath(sourceCacheKey(url));\n  const { manager, close } = await openLibraryManager();\n  try {\n    // By clone path, not short name: another org's repo of the same name keeps its row.\n    const existing = (await manager.listLibraries()).find(\n      (l) => path.resolve(l.path) === path.resolve(dest),\n    );\n    if (existing) {\n      await manager.removeLibrary(existing.name, { purge: false });\n    }\n  } finally {\n    close();\n  }\n  if (purgeClone) {\n    const dest = sourceClonePath(sourceCacheKey(url));\n    if (existsSync(dest)) rmSync(dest, { recursive: true, force: true });\n  }\n}\n\nexport function makeSourceCommand(): Command {\n  const cmd = new Command(\"source\").description(\n    \"Manage github sources for the current project (recorded in skaile.yaml)\",\n  );\n\n  // ── source add ──────────────────────────────────────────────────────────\n  cmd\n    .command(\"add <source>\")\n    .description(\n      \"Clone a github repo and register it in this project's skaile.yaml. \" +\n        \"<source> may be a full git URL, an owner/repo shorthand, or a bare \" +\n        \"name (→ git@github.com:skaile-ai/<name>.git).\",\n    )\n    .option(\"--name <slug>\", \"[deprecated] no-op — the source entry stores only the URL\")\n    .option(\"--pin <ref>\", \"Pin a branch, tag, or 40-char SHA\")\n    .option(\"--branch <branch>\", \"[deprecated] alias for --pin\")\n    .option(\"--force\", \"Remove an existing clone and re-clone\", false)\n    .option(\"--dev\", \"Also index dev-only assets under the source's dev_paths\", false)\n    .action(\n      async (\n        source: string,\n        opts: {\n          name?: string;\n          pin?: string;\n          branch?: string;\n          force?: boolean;\n          dev?: boolean;\n        },\n      ) => {\n        const url = normalizeSourceUrl(source);\n        const yamlPath = requireProjectYamlPath();\n\n        // A different URL string that maps to the same cache key (e.g. the\n        // `.git`-suffixed or scp form of an already-registered remote) would\n        // fight over one clone dir. setSource only dedupes exact strings, so\n        // reject the ambiguous collision here instead of silently shadowing.\n        const collision = findCacheKeyCollision(readProjectSources(yamlPath), url);\n        if (collision) {\n          logErr(\n            `\"${url}\" maps to the same cache key (${sourceCacheKey(url)}) as ` +\n              `already-registered \"${collision.url}\". Remove that source first ` +\n              `(skaile source remove) or re-use its exact URL to update it.`,\n          );\n          process.exitCode = 1;\n          return;\n        }\n\n        if (opts.name) {\n          logWarn(\n            \"the --name flag is deprecated; the source entry now stores only the URL \" +\n              \"(the cache slug is derived from it).\",\n          );\n        }\n        const pin = opts.pin ?? opts.branch;\n        const slug = sourceShortName(url);\n        const entry: SourceEntry = { url };\n        if (pin) entry.pin = pin;\n\n        const dest = sourceClonePath(sourceCacheKey(url));\n        const preexisting = existsSync(dest);\n        // Clone/validate the repo BEFORE touching skaile.yaml — a failed clone\n        // (repo not found, bad URL, network error) hard-exits in ensureClone, so\n        // the entry is only ever recorded once the source is known-good.\n        const cloned = ensureClone(entry, { force: opts.force });\n        if (!cloned) {\n          logOk(`Reusing cached clone at ${dest}`);\n        } else if (preexisting) {\n          logOk(`Re-cloned ${url} → ${dest}`);\n        } else {\n          logOk(`Cloned ${url} → ${dest}`);\n        }\n\n        const editor = WorkspaceYamlEditor.load(yamlPath);\n        editor.setSource(entry);\n        editor.save();\n\n        const result = await refreshManifestCache(entry, opts.dev);\n        const failed = indexingHadFailures(result);\n        const indexedMsg = `Indexed ${result.assetsUpdated} of ${result.assetsFound} asset(s) from \"${slug}\".`;\n        if (failed) {\n          logWarn(indexedMsg);\n        } else {\n          logOk(indexedMsg);\n        }\n        for (const err of result.errors) logWarn(err);\n        for (const advisory of result.advisories) logInfo(advisory);\n\n        const legacyHint = legacySourceConfigHint(dest);\n        if (legacyHint) logWarn(legacyHint);\n\n        const where = path.relative(process.cwd(), yamlPath);\n        if (failed) {\n          // The entry IS recorded in skaile.yaml, but indexing did not fully\n          // succeed — don't present it as a clean success.\n          logWarn(\n            `Source \"${slug}\" registered in ${where}, but ${result.errors.length} ` +\n              `asset(s) failed to index (see above). Fix the cause, then re-run ` +\n              `\\`skaile source sync ${slug}\\`.`,\n          );\n          process.exitCode = 1;\n        } else {\n          logOk(`Source \"${slug}\" registered in ${where}.`);\n        }\n      },\n    );\n\n  // ── source list ─────────────────────────────────────────────────────────\n  cmd\n    .command(\"list\")\n    .description(\"List sources registered in this project's skaile.yaml\")\n    .option(\"--json\", \"Output as JSON\")\n    .action(async (opts: { json?: boolean }) => {\n      const yamlPath = requireProjectYamlPath();\n      const sources = readProjectSources(yamlPath);\n      if (opts.json) return console.log(JSON.stringify(sources, null, 2));\n      if (sources.length === 0) {\n        logInfo(\"No sources in skaile.yaml. Run `skaile source add <git-url>` to register one.\");\n        return;\n      }\n      console.log();\n      console.log(S.heading(\"  Sources\"));\n      for (const s of sources) {\n        const slug = sourceLabel(s, sources);\n        const cached = existsSync(sourceClonePath(sourceCacheKey(s.url)))\n          ? \"\"\n          : S.warn(\" (not cached)\");\n        console.log(`  ${S.cmd(slug.padEnd(24))}  ${S.dim(s.url)}${cached}`);\n      }\n      console.log(`\\n  ${S.dim(`${sources.length} source(s)`)}\\n`);\n    });\n\n  // ── source show ─────────────────────────────────────────────────────────\n  cmd\n    .command(\"show <name-or-url>\")\n    .description(\"Show details for a source (matched by URL or derived slug)\")\n    .action(async (key: string) => {\n      const yamlPath = requireProjectYamlPath();\n      const all = readProjectSources(yamlPath);\n      const resolved = resolveSource(all, key);\n      if (resolved.kind === \"none\") {\n        logErr(`No source matching \"${key}\" in ${yamlPath}.`);\n        process.exit(1);\n      }\n      if (resolved.kind === \"ambiguous\") exitAmbiguousSource(key, resolved.entries);\n      const entry = resolved.entry;\n      const slug = sourceLabel(entry, all);\n      const clonePath = sourceClonePath(sourceCacheKey(entry.url));\n      console.log(\n        JSON.stringify(\n          {\n            ...entry,\n            slug,\n            clonePath,\n            cached: existsSync(clonePath),\n          },\n          null,\n          2,\n        ),\n      );\n    });\n\n  // ── source remove ───────────────────────────────────────────────────────\n  cmd\n    .command(\"remove <name-or-url>\")\n    .description(\"Remove a source from this project's skaile.yaml (matched by URL or slug)\")\n    .option(\n      \"--purge\",\n      `Also delete the cached clone from ${path.join(globalCacheRoot(), \"sources\")}${path.sep}`,\n      false,\n    )\n    .action(async (key: string, opts: { purge: boolean }) => {\n      const yamlPath = requireProjectYamlPath();\n      const editor = WorkspaceYamlEditor.load(yamlPath);\n      // Resolve to the stored URL (entries are keyed by url in the editor).\n      const all = editor.getSources();\n      const resolved = resolveSource(all, key);\n      if (resolved.kind === \"none\") {\n        logErr(`No source matching \"${key}\" in ${yamlPath}.`);\n        process.exit(1);\n      }\n      if (resolved.kind === \"ambiguous\") exitAmbiguousSource(key, resolved.entries);\n      const match = resolved.entry;\n      const slug = sourceLabel(match, all);\n      editor.removeSource(match.url);\n      editor.save();\n      await dropManifestCache(match.url, opts.purge);\n      logOk(\n        opts.purge\n          ? `Removed source \"${slug}\" and purged its clone.`\n          : `Removed source \"${slug}\" from skaile.yaml (clone left in ${path.join(globalCacheRoot(), \"sources\")} — pass --purge to remove it, or run \\`skaile cache clean\\`).`,\n      );\n    });\n\n  // ── source sync ─────────────────────────────────────────────────────────\n  cmd\n    .command(\"sync [name]\")\n    .description(\"Pull upstream changes and refresh the manifest cache\")\n    .option(\"--dev\", \"Also index dev-only assets under each source's dev_paths\", false)\n    .option(\"--all\", \"Sync every source without prompting\", false)\n    .action(async (key: string | undefined, opts: { dev?: boolean; all?: boolean }) => {\n      const yamlPath = requireProjectYamlPath();\n      const sources = readProjectSources(yamlPath);\n      if (sources.length === 0) {\n        logInfo(\"No sources in skaile.yaml.\");\n        return;\n      }\n\n      let targets: SourceEntry[];\n      if (key) {\n        targets = sources.filter((s) => sourceMatchesKey(s, key));\n        if (targets.length === 0) {\n          logInfo(`No source matching \"${key}\".`);\n          return;\n        }\n      } else if (opts.all || sources.length === 1 || !process.stdin.isTTY) {\n        // --all, a single source, or a non-interactive shell: sync everything.\n        targets = sources;\n      } else {\n        const selected = await p.multiselect({\n          message: \"Select sources to sync\",\n          options: sources.map((s) => ({\n            value: s.url,\n            label: sourceShortName(s.url),\n            hint: s.url,\n          })),\n          required: true,\n        });\n        if (p.isCancel(selected)) {\n          p.cancel(\"Cancelled.\");\n          return;\n        }\n        const picked = new Set(selected as string[]);\n        targets = sources.filter((s) => picked.has(s.url));\n      }\n      for (const entry of targets) {\n        const slug = sourceLabel(entry, sources);\n        const dest = sourceClonePath(sourceCacheKey(entry.url));\n        if (!existsSync(dest)) {\n          ensureClone(entry);\n          logOk(`${slug}: cloned to ${dest}.`);\n        } else {\n          const pull = pullSourceClone(dest, entry);\n          if (!pull.ok) {\n            logErr(`${slug}: ${pull.error}`);\n            process.exitCode = 1;\n            continue;\n          }\n        }\n        const result = await refreshManifestCache(entry, opts.dev);\n        const failed = indexingHadFailures(result);\n        const indexedMsg = `${slug}: indexed ${result.assetsUpdated} of ${result.assetsFound} asset(s).`;\n        if (failed) {\n          logWarn(indexedMsg);\n          process.exitCode = 1;\n        } else {\n          logOk(indexedMsg);\n        }\n        for (const err of result.errors) logWarn(`${slug}: ${err}`);\n        for (const advisory of result.advisories) logInfo(`${slug}: ${advisory}`);\n        const legacyHint = legacySourceConfigHint(dest);\n        if (legacyHint) logWarn(`${slug}: ${legacyHint}`);\n      }\n    });\n\n  // ── source patch / propose (stubs) ──────────────────────────────────────\n  cmd\n    .command(\"patch <ref>\")\n    .description(\"Extract an asset for editing against the source\")\n    .action((_ref: string) => {\n      logErr(\n        \"`skaile source patch` is scaffolded but not yet wired. \" +\n          \"The patch flow lands in a follow-up PR.\",\n      );\n      process.exit(2);\n    });\n\n  cmd\n    .command(\"propose <ref>\")\n    .description(\"Open a PR with the patch against the source upstream\")\n    .action((_ref: string) => {\n      logErr(\n        \"`skaile source propose` is scaffolded but not yet wired. \" +\n          \"The propose flow lands in a follow-up PR.\",\n      );\n      process.exit(2);\n    });\n\n  // ── source manifest * ───────────────────────────────────────────────────\n  addSourceManifestCommands(cmd);\n\n  return cmd;\n}\n"]}