@skaile/workspaces 1.16.0 → 2.1.0

package/dist/{chunk-BYS6JDZB.js → chunk-Y6VSFX2A.js}

@@ -1,4 +1,4 @@
-import { softDepName } from './chunk-A22KZ7GZ.js';
+import { softDepName } from './chunk-VPXBAEWE.js';
 import pc from 'picocolors';
 
 var S = {
@@ -94,5 +94,5 @@ function formatRelativeTime(date) {
 }
 
 export { KIND_COL_WIDTH, S, bareSoftDepName, colorRef, fitWidth, formatRelativeTime, formatSoftDepAddPreview, formatSoftDepHint, formatSoftDepRemovePreview, formatSoftDepSection, kindColor, kindColorPad, logErr, logInfo, logOk, logWarn };
-//# sourceMappingURL=chunk-BYS6JDZB.js.map
-//# sourceMappingURL=chunk-BYS6JDZB.js.map
+//# sourceMappingURL=chunk-Y6VSFX2A.js.map
+//# sourceMappingURL=chunk-Y6VSFX2A.js.map

package/dist/{chunk-BYS6JDZB.js.map → chunk-Y6VSFX2A.js.map}

@@ -1 +1 @@
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{ softDepName } from \"@skaile/workspaces/asset-manager\";\nimport pc from \"picocolors\";\n\n/**\n * Terminal styling helpers used across all CLI commands.\n *\n * @docLink cli/dev-guide#helpers\n */\nexport const S = {\n  brand: (s: string) => pc.cyan(pc.bold(s)),\n  cmd: (s: string) => pc.cyan(s),\n  heading: (s: string) => pc.bold(s),\n  bold: (s: string) => pc.bold(s),\n  dim: (s: string) => pc.dim(s),\n  ok: (s: string) => pc.green(s),\n  warn: (s: string) => pc.yellow(s),\n  err: (s: string) => pc.red(s),\n  label: (s: string) => pc.dim(s),\n  rule: (w = 40) => pc.dim(\"─\".repeat(w)),\n};\n\nconst KIND_COLORS: Record<string, (s: string) => string> = {\n  skill: pc.blue,\n  agent: pc.magenta,\n  prompt: pc.yellow,\n  flow: pc.green,\n  bundle: pc.cyan,\n  contract: pc.red,\n  connector: pc.green,\n  mount: pc.green,\n  knowledge: pc.cyan,\n  persona: pc.cyan,\n  ruleset: pc.cyan,\n  \"mcp-server\": pc.magenta,\n};\n\n/**\n * Fit a plain (ANSI-free) string into exactly `width` columns: truncate with a\n * trailing `…` when too long, pad with spaces when too short. Keeps fixed-width\n * columns from overflowing the row when a value (e.g. an asset name) is wider\n * than its budget.\n */\nexport function fitWidth(s: string, width: number): string {\n  if (width <= 0) return \"\";\n  if (s.length > width) return width === 1 ? \"…\" : `${s.slice(0, width - 1)}…`;\n  return s.padEnd(width);\n}\n\n/** Color-code an asset kind string. */\nexport function kindColor(kind: string): string {\n  const colorFn = KIND_COLORS[kind] ?? pc.dim;\n  return colorFn(kind);\n}\n\n/**\n * Widest kind label (`mcp-server`); the default kind-column width fits it so\n * long kinds don't shove the rest of the row out of alignment.\n */\nexport const KIND_COL_WIDTH = 10;\n\n/**\n * Color-code an asset kind string fit to exactly `width` columns — pads short\n * kinds, truncates over-long ones (via {@link fitWidth}) so the column can never\n * overflow and break row alignment.\n */\nexport function kindColorPad(kind: string, width = KIND_COL_WIDTH): string {\n  const colorFn = KIND_COLORS[kind] ?? pc.dim;\n  return colorFn(fitWidth(kind, width));\n}\n\n/** Color-code a \"kind:name\" reference string. */\nexport function colorRef(ref: string): string {\n  const colonIdx = ref.indexOf(\":\");\n  if (colonIdx === -1) return ref;\n  const kind = ref.slice(0, colonIdx);\n  const rest = ref.slice(colonIdx);\n  return `${kindColor(kind)}${rest}`;\n}\n\n/**\n * Print a success line prefixed with a green check mark.\n *\n * @param msg - Message to display.\n * @docLink cli/dev-guide#helpers\n */\nexport function logOk(msg: string) {\n  console.log(`  ${pc.green(\"✓\")} ${msg}`);\n}\n/**\n * Print an error line prefixed with a red cross to stderr.\n *\n * @param msg - Message to display.\n * @docLink cli/dev-guide#helpers\n */\nexport function logErr(msg: string) {\n  console.error(`  ${pc.red(\"✗\")} ${msg}`);\n}\n/**\n * Print a warning line prefixed with a yellow exclamation mark.\n *\n * @param msg - Message to display.\n * @docLink cli/dev-guide#helpers\n */\nexport function logWarn(msg: string) {\n  console.log(`  ${pc.yellow(\"!\")} ${msg}`);\n}\n/**\n * Print an info line prefixed with a dim dot.\n *\n * @param msg - Message to display.\n * @docLink cli/dev-guide#helpers\n */\nexport function logInfo(msg: string) {\n  console.log(`  ${pc.dim(\"·\")} ${msg}`);\n}\n\n/**\n * Bare asset name of a canonical soft-dep target ref (`@pub/name@ver` → `name`),\n * for compact rendering in `info` / `tree` / `why`. Delegates to the asset-manager\n * parser (the soft-dep read surface) so the two never diverge.\n */\nexport function bareSoftDepName(ref: string): string {\n  return softDepName(ref);\n}\n\n/**\n * The report-only soft-dep hint line shared by the `add` no-TTY branch and the\n * `install` surface, so the two user-facing wordings can't drift. Appends a\n * runnable `skaile add` suffix only when the target has a parseable ref.\n */\nexport function formatSoftDepHint(edge: { from: string; to: string; toRef?: string }): string {\n  const suffix = edge.toRef ? ` — run \\`skaile add ${edge.toRef}\\` to include it.` : \"\";\n  return `${bareSoftDepName(edge.from)} references ${bareSoftDepName(edge.to)} (soft dependency)${suffix}`;\n}\n\n/**\n * Build the \"Soft dependencies (inferred)\" section for `skaile info`. Returns one\n * header line plus one line per soft-dep target, each marked `(soft)` to read\n * differently from a typed `requires`. Empty array when there are no soft deps,\n * so the caller prints nothing.\n */\nexport function formatSoftDepSection(targets: string[]): string[] {\n  if (targets.length === 0) return [];\n  const out = [`  ${S.label(\"Soft dependencies (inferred)\")}:`];\n  for (const t of targets) out.push(`    ${S.dim(\"·\")}  ${t} ${S.dim(\"(soft)\")}`);\n  return out;\n}\n\n/**\n * Footer line previewing the soft deps that *adding* the highlighted asset would\n * reference (manage TUI). \"references\" + \"not auto-added\" makes clear the pull is\n * report-only. Empty string when there are no targets, so the caller clears.\n */\nexport function formatSoftDepAddPreview(name: string, targets: string[]): string {\n  if (targets.length === 0) return \"\";\n  return S.dim(`${name} references ${targets.join(\", \")} (soft dep, not auto-added)`);\n}\n\n/**\n * Footer line previewing the soft deps that *removing* the highlighted asset\n * would orphan (manage TUI) — symmetric with {@link formatSoftDepAddPreview}.\n * Empty string when nothing would be orphaned, so the caller clears.\n */\nexport function formatSoftDepRemovePreview(name: string, targets: string[]): string {\n  if (targets.length === 0) return \"\";\n  return S.dim(`removing ${name} would orphan ${targets.join(\", \")} (soft dep)`);\n}\n\n/** Format a Date as a human-readable relative time string (e.g. \"5m ago\"). */\nexport function formatRelativeTime(date: Date): string {\n  const diff = Date.now() - date.getTime();\n  const seconds = Math.floor(diff / 1000);\n  if (seconds < 60) return \"just now\";\n  const minutes = Math.floor(seconds / 60);\n  if (minutes < 60) return `${minutes}m ago`;\n  const hours = Math.floor(minutes / 60);\n  if (hours < 24) return `${hours}h ago`;\n  const days = Math.floor(hours / 24);\n  return `${days}d ago`;\n}\n"]}
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{ softDepName } from \"@skaile/workspaces/asset-manager\";\nimport pc from \"picocolors\";\n\n/**\n * Terminal styling helpers used across all CLI commands.\n *\n * @docLink cli/dev-guide#helpers\n */\nexport const S = {\n  brand: (s: string) => pc.cyan(pc.bold(s)),\n  cmd: (s: string) => pc.cyan(s),\n  heading: (s: string) => pc.bold(s),\n  bold: (s: string) => pc.bold(s),\n  dim: (s: string) => pc.dim(s),\n  ok: (s: string) => pc.green(s),\n  warn: (s: string) => pc.yellow(s),\n  err: (s: string) => pc.red(s),\n  label: (s: string) => pc.dim(s),\n  rule: (w = 40) => pc.dim(\"─\".repeat(w)),\n};\n\nconst KIND_COLORS: Record<string, (s: string) => string> = {\n  skill: pc.blue,\n  agent: pc.magenta,\n  prompt: pc.yellow,\n  flow: pc.green,\n  bundle: pc.cyan,\n  contract: pc.red,\n  connector: pc.green,\n  mount: pc.green,\n  knowledge: pc.cyan,\n  persona: pc.cyan,\n  ruleset: pc.cyan,\n  \"mcp-server\": pc.magenta,\n};\n\n/**\n * Fit a plain (ANSI-free) string into exactly `width` columns: truncate with a\n * trailing `…` when too long, pad with spaces when too short. Keeps fixed-width\n * columns from overflowing the row when a value (e.g. an asset name) is wider\n * than its budget.\n */\nexport function fitWidth(s: string, width: number): string {\n  if (width <= 0) return \"\";\n  if (s.length > width) return width === 1 ? \"…\" : `${s.slice(0, width - 1)}…`;\n  return s.padEnd(width);\n}\n\n/** Color-code an asset kind string. */\nexport function kindColor(kind: string): string {\n  const colorFn = KIND_COLORS[kind] ?? pc.dim;\n  return colorFn(kind);\n}\n\n/**\n * Widest kind label (`mcp-server`); the default kind-column width fits it so\n * long kinds don't shove the rest of the row out of alignment.\n */\nexport const KIND_COL_WIDTH = 10;\n\n/**\n * Color-code an asset kind string fit to exactly `width` columns — pads short\n * kinds, truncates over-long ones (via {@link fitWidth}) so the column can never\n * overflow and break row alignment.\n */\nexport function kindColorPad(kind: string, width = KIND_COL_WIDTH): string {\n  const colorFn = KIND_COLORS[kind] ?? pc.dim;\n  return colorFn(fitWidth(kind, width));\n}\n\n/** Color-code a \"kind:name\" reference string. */\nexport function colorRef(ref: string): string {\n  const colonIdx = ref.indexOf(\":\");\n  if (colonIdx === -1) return ref;\n  const kind = ref.slice(0, colonIdx);\n  const rest = ref.slice(colonIdx);\n  return `${kindColor(kind)}${rest}`;\n}\n\n/**\n * Print a success line prefixed with a green check mark.\n *\n * @param msg - Message to display.\n * @docLink cli/dev-guide#helpers\n */\nexport function logOk(msg: string) {\n  console.log(`  ${pc.green(\"✓\")} ${msg}`);\n}\n/**\n * Print an error line prefixed with a red cross to stderr.\n *\n * @param msg - Message to display.\n * @docLink cli/dev-guide#helpers\n */\nexport function logErr(msg: string) {\n  console.error(`  ${pc.red(\"✗\")} ${msg}`);\n}\n/**\n * Print a warning line prefixed with a yellow exclamation mark.\n *\n * @param msg - Message to display.\n * @docLink cli/dev-guide#helpers\n */\nexport function logWarn(msg: string) {\n  console.log(`  ${pc.yellow(\"!\")} ${msg}`);\n}\n/**\n * Print an info line prefixed with a dim dot.\n *\n * @param msg - Message to display.\n * @docLink cli/dev-guide#helpers\n */\nexport function logInfo(msg: string) {\n  console.log(`  ${pc.dim(\"·\")} ${msg}`);\n}\n\n/**\n * Bare asset name of a canonical soft-dep target ref (`@pub/name@ver` → `name`),\n * for compact rendering in `info` / `tree` / `why`. Delegates to the asset-manager\n * parser (the soft-dep read surface) so the two never diverge.\n */\nexport function bareSoftDepName(ref: string): string {\n  return softDepName(ref);\n}\n\n/**\n * The report-only soft-dep hint line shared by the `add` no-TTY branch and the\n * `install` surface, so the two user-facing wordings can't drift. Appends a\n * runnable `skaile add` suffix only when the target has a parseable ref.\n */\nexport function formatSoftDepHint(edge: { from: string; to: string; toRef?: string }): string {\n  const suffix = edge.toRef ? ` — run \\`skaile add ${edge.toRef}\\` to include it.` : \"\";\n  return `${bareSoftDepName(edge.from)} references ${bareSoftDepName(edge.to)} (soft dependency)${suffix}`;\n}\n\n/**\n * Build the \"Soft dependencies (inferred)\" section for `skaile info`. Returns one\n * header line plus one line per soft-dep target, each marked `(soft)` to read\n * differently from a typed `requires`. Empty array when there are no soft deps,\n * so the caller prints nothing.\n */\nexport function formatSoftDepSection(targets: string[]): string[] {\n  if (targets.length === 0) return [];\n  const out = [`  ${S.label(\"Soft dependencies (inferred)\")}:`];\n  for (const t of targets) out.push(`    ${S.dim(\"·\")}  ${t} ${S.dim(\"(soft)\")}`);\n  return out;\n}\n\n/**\n * Footer line previewing the soft deps that *adding* the highlighted asset would\n * reference (manage TUI). \"references\" + \"not auto-added\" makes clear the pull is\n * report-only. Empty string when there are no targets, so the caller clears.\n */\nexport function formatSoftDepAddPreview(name: string, targets: string[]): string {\n  if (targets.length === 0) return \"\";\n  return S.dim(`${name} references ${targets.join(\", \")} (soft dep, not auto-added)`);\n}\n\n/**\n * Footer line previewing the soft deps that *removing* the highlighted asset\n * would orphan (manage TUI) — symmetric with {@link formatSoftDepAddPreview}.\n * Empty string when nothing would be orphaned, so the caller clears.\n */\nexport function formatSoftDepRemovePreview(name: string, targets: string[]): string {\n  if (targets.length === 0) return \"\";\n  return S.dim(`removing ${name} would orphan ${targets.join(\", \")} (soft dep)`);\n}\n\n/** Format a Date as a human-readable relative time string (e.g. \"5m ago\"). */\nexport function formatRelativeTime(date: Date): string {\n  const diff = Date.now() - date.getTime();\n  const seconds = Math.floor(diff / 1000);\n  if (seconds < 60) return \"just now\";\n  const minutes = Math.floor(seconds / 60);\n  if (minutes < 60) return `${minutes}m ago`;\n  const hours = Math.floor(minutes / 60);\n  if (hours < 24) return `${hours}h ago`;\n  const days = Math.floor(hours / 24);\n  return `${days}d ago`;\n}\n"]}

package/dist/{chunk-ISA7R7PK.js → chunk-YODP3STD.js}

@@ -1,8 +1,9 @@
 import { decodeSkaileManifest, SKAILE_MANIFEST_FILENAME } from './chunk-P4VHQA4N.js';
-import { scanDirectory, parseFrontmatter, bundleDepRefs, fromMcpServerMdContent } from './chunk-BQCGFPHW.js';
+import { scanDirectory, parseFrontmatter, bundleDepRefs, fromMcpServerMdContent, withFsDeadline, tryWithFsDeadline, fsDeadlineMs } from './chunk-DYMWJAL4.js';
 import { isValidAssetName, slugifyAssetName, parseAssetRef, assetRefToStr } from './chunk-GEEW6SY2.js';
 import { SUPPORTED_DRIVER_TARGETS, globalBackendRoot } from './chunk-MENCWIHW.js';
-import { existsSync, mkdirSync, renameSync, readdirSync, rmdirSync, readFileSync, writeFileSync, rmSync, lstatSync, symlinkSync, cpSync } from 'fs';
+import { existsSync, mkdirSync, renameSync, readdirSync, rmdirSync, readFileSync, writeFileSync, rmSync, lstatSync, symlinkSync } from 'fs';
+import { readdir, stat, cp } from 'fs/promises';
 import { homedir } from 'os';
 import { join, dirname, relative, resolve, parse as parse$1, basename } from 'path';
 import { parse, stringify } from 'yaml';
@@ -110,25 +111,25 @@ var KIND_DIRS = [
 var MD_FILE_BY_KIND = Object.fromEntries(
   KIND_DIRS.map((k) => [k.kind, k.mdName])
 );
-function buildProvenanceIndex(clones, _opts) {
+async function buildProvenanceIndex(clones, _opts) {
   const index = /* @__PURE__ */ new Map();
-  for (const clone of clones) walkOne(clone, index);
+  for (const clone of clones) await walkOne(clone, index);
   return index;
 }
-function walkOne(clone, index) {
+async function walkOne(clone, index) {
   if (clone.overlayManifestPath && existsSync(clone.overlayManifestPath)) {
-    if (walkWithManifest(clone, clone.overlayManifestPath, index)) return;
+    if (await walkWithManifest(clone, clone.overlayManifestPath, index)) return;
   }
   const manifestPaths = findManifestFiles(clone.localPath);
   if (manifestPaths.length === 0) {
-    walkFilenameConvention(clone, index);
+    await walkFilenameConvention(clone, index);
     return;
   }
   let produced = false;
   for (const p of manifestPaths) {
-    if (walkWithManifest(clone, p, index)) produced = true;
+    if (await walkWithManifest(clone, p, index)) produced = true;
   }
-  if (!produced) walkFilenameConvention(clone, index);
+  if (!produced) await walkFilenameConvention(clone, index);
 }
 function findManifestFiles(root) {
   const found = [];
@@ -144,7 +145,7 @@ function findManifestFiles(root) {
   walk(root);
   return found;
 }
-function walkWithManifest(clone, manifestPath, index) {
+async function walkWithManifest(clone, manifestPath, index) {
   const { manifest } = decodeSkaileManifest(readFileSync(manifestPath, "utf8"));
   const repoRoot = clone.localPath;
   const manifestPublisher = manifest.publisher ?? publisherFromGithubUrl(clone.sourceUrl);
@@ -173,7 +174,7 @@ function walkWithManifest(clone, manifestPath, index) {
       files,
       sha256: a.sha256 ?? compositeSha256(files),
       metadata: resolved.metadata,
-      deps: a.dependencies ?? manifestDeps(repoRoot, files, a.kind)
+      deps: a.dependencies ?? await manifestDeps(repoRoot, files, a.kind)
     };
     applyStoreListingMetadata(candidate, a, manifest, resolved.frontmatter);
     push(index, `${assetPublisher}/${a.kind}:${name}`, candidate);
@@ -267,7 +268,7 @@ var DIR_SCOPED_KINDS = /* @__PURE__ */ new Set([
   "connector",
   "knowledge"
 ]);
-function walkFilenameConvention(clone, index) {
+async function walkFilenameConvention(clone, index) {
   const publisher = publisherFromGithubUrl(clone.sourceUrl);
   if (!publisher) {
     throw new Error(
@@ -275,7 +276,7 @@ function walkFilenameConvention(clone, index) {
     );
   }
   const version = (clone.tag ? clone.tag.replace(/^v/, "") : void 0) ?? syntheticVersion(clone.commit);
-  for (const e of scanDirectory(clone.localPath, publisher)) {
+  for (const e of await scanDirectory(clone.localPath, publisher)) {
     const manifestAbs = e.source;
     const files = [];
     if (DIR_SCOPED_KINDS.has(e.kind)) {
@@ -293,7 +294,7 @@ function walkFilenameConvention(clone, index) {
       files,
       sha256: compositeSha256(files),
       metadata: readMetadata(clone.localPath, files, e.kind),
-      deps: manifestDeps(clone.localPath, files, e.kind)
+      deps: await manifestDeps(clone.localPath, files, e.kind)
     };
     push(index, `${publisher}/${e.kind}:${e.name}`, candidate);
   }
@@ -329,11 +330,11 @@ function readContentFrontmatter(repoRoot, files, kind) {
     return void 0;
   }
 }
-function manifestDeps(repoRoot, files, kind) {
+async function manifestDeps(repoRoot, files, kind) {
   const ext = kind === "bundle" ? [".bundle.yaml", "BUNDLE.md"] : kind === "flow" ? [".flow.yaml", ".flow.json"] : null;
   if (!ext) return void 0;
   const mf = files.find((f) => ext.some((e) => f.path.endsWith(e)));
-  return mf ? bundleDepRefs(join(repoRoot, mf.path)) : void 0;
+  return mf ? await bundleDepRefs(join(repoRoot, mf.path)) : void 0;
 }
 function push(index, key, candidate) {
   const arr = index.get(key) ?? [];
@@ -581,16 +582,16 @@ function resolveSourcePublisher(repoDir) {
   const org = repoSlugFromGitRemote(repoDir)?.split("/")[0];
   return org ? normalizeGithubOrg(org) : void 0;
 }
-function scanRepo(repoDir, repoName) {
+async function scanRepo(repoDir, repoName) {
   const repo = repoSlugFromGitRemote(repoDir);
   const publisher = resolveSourcePublisher(repoDir) ?? repoName;
-  return scanDirectory(repoDir, repoName).map((e) => ({
+  return (await scanDirectory(repoDir, repoName)).map((e) => ({
     ...e,
     publisher,
     ...repo ? { repo } : {}
   }));
 }
-function resolveAsset(ref, repositories, reposDir, opts) {
+async function resolveAsset(ref, repositories, reposDir, opts) {
   let repoNames;
   if (ref.publisher) {
     repoNames = [ref.publisher];
@@ -605,7 +606,7 @@ function resolveAsset(ref, repositories, reposDir, opts) {
     if (!decl) continue;
     const repoDir = resolveRepoDir(decl, repoName, reposDir, opts?.projectDir);
     if (!repoDir || !existsSync(repoDir)) continue;
-    const entries = scanRepo(repoDir, repoName);
+    const entries = await scanRepo(repoDir, repoName);
     const match = entries.find((e) => e.kind === ref.kind && e.name === ref.name);
     if (match) return match;
   }
@@ -1596,7 +1597,10 @@ function mergeMcpDeclarations(base, overlay) {
     headers: overlay.headers ? base.headers ? { ...base.headers, ...overlay.headers } : overlay.headers : base.headers,
     description: overlay.description ?? base.description,
     tags: overlay.tags ?? base.tags,
-    recipe: overlay.recipe ?? base.recipe
+    recipe: overlay.recipe ?? base.recipe,
+    // Sticky: once either side carried folded `.instance.json` secrets, the
+    // merged `env` does too — the flag must not be lost by an overlay.
+    instanceSecretsFolded: overlay.instanceSecretsFolded ?? base.instanceSecretsFolded
   };
 }
 var unscopedTail = (x) => x.includes("/") ? x.split("/").pop() : x;
@@ -1612,7 +1616,10 @@ function foldInstanceEnv(decl, instancePath, name) {
     }
     if (instance.resolvedSecrets && typeof instance.resolvedSecrets === "object") {
       for (const [k, v] of Object.entries(instance.resolvedSecrets)) {
-        if (typeof v === "string") env[k] = v;
+        if (typeof v === "string") {
+          env[k] = v;
+          decl.instanceSecretsFolded = true;
+        }
       }
     }
     if (Object.keys(env).length > 0) decl.env = env;
@@ -1660,13 +1667,43 @@ function loadMaterializedMcpDeclarations(projectDir) {
   }
   return result;
 }
-function stageMaterializedSkills(projectDir, skillsDir, opts) {
+function subdirNames(dir) {
+  try {
+    return readdirSync(dir, { withFileTypes: true }).filter((e) => e.isDirectory()).map((e) => e.name);
+  } catch {
+    return [];
+  }
+}
+function loadStoreStagedMcpDeclarations(projectDir) {
+  const root = join(projectDir, ".skaile/cache/store");
+  if (!existsSync(root)) return [];
+  const result = [];
+  for (const publisher of subdirNames(root)) {
+    const kindDir = join(root, publisher, "mcp-server");
+    for (const name of subdirNames(kindDir)) {
+      const nameDir = join(kindDir, name);
+      const versions = subdirNames(nameDir).sort(
+        (a, b) => a.localeCompare(b, "en", { numeric: true })
+      );
+      for (const version of versions) {
+        const decl = deriveSingleMaterializedMcpDeclaration(join(nameDir, version), name);
+        if (decl) result.push(decl);
+      }
+    }
+  }
+  return result;
+}
+var TREE_COPY_DEADLINE_FACTOR = 4;
+async function stageMaterializedSkills(projectDir, skillsDir, opts) {
   const dir = join(projectDir, ".skaile/assets/skill");
-  if (!existsSync(dir)) return [];
   const staged = [];
   let subdirs;
   try {
-    subdirs = readdirSync(dir, { withFileTypes: true }).filter((e) => e.isDirectory()).map((e) => e.name);
+    const entries = await withFsDeadline(
+      `readdir ${dir}`,
+      () => readdir(dir, { withFileTypes: true })
+    );
+    subdirs = entries.filter((e) => e.isDirectory()).map((e) => e.name);
   } catch {
     return [];
   }
@@ -1676,15 +1713,27 @@ function stageMaterializedSkills(projectDir, skillsDir, opts) {
   }
   for (const name of subdirs) {
     const src = join(dir, name);
-    if (!existsSync(join(src, "SKILL.md"))) continue;
     if (declaredSet && !declaredSet.has(name) && !declaredSet.has(unscopedTail(name))) continue;
+    const hasSkillMd = await tryWithFsDeadline(
+      `stat ${join(src, "SKILL.md")}`,
+      async () => {
+        await stat(join(src, "SKILL.md"));
+        return true;
+      },
+      false
+    );
+    if (!hasSkillMd) continue;
     const dest = join(projectDir, skillsDir, name);
     try {
-      cpSync(src, dest, {
-        recursive: true,
-        force: true,
-        filter: (source) => basename(source) !== ".instance.json"
-      });
+      await withFsDeadline(
+        `cp ${src} -> ${dest}`,
+        () => cp(src, dest, {
+          recursive: true,
+          force: true,
+          filter: (source) => basename(source) !== ".instance.json"
+        }),
+        fsDeadlineMs() * TREE_COPY_DEADLINE_FACTOR
+      );
       staged.push(name);
     } catch (err) {
       console.warn(
@@ -1763,8 +1812,8 @@ function collectMcpRefStrings(dependencies) {
   }
   return mcpRefStrings;
 }
-function buildMcpProvenanceIndex(sources, projectDir) {
-  return sources.length > 0 ? buildProvenanceIndex(buildSourceClones(sources)) : /* @__PURE__ */ new Map();
+async function buildMcpProvenanceIndex(sources, projectDir) {
+  return sources.length > 0 ? await buildProvenanceIndex(buildSourceClones(sources)) : /* @__PURE__ */ new Map();
 }
 function upsertCatalogMcpDecls(mcpRefStrings, provenanceIndex, upsert) {
   const seen = /* @__PURE__ */ new Set();
@@ -1784,18 +1833,18 @@ function upsertCatalogMcpDecls(mcpRefStrings, provenanceIndex, upsert) {
     upsert(catalogDecl);
   }
 }
-function upsertMaterializedMcpDecls(materialized, explicit, mcpRefStrings, upsert) {
+function upsertGatedMcpDecls(decls, explicit, mcpRefStrings, upsert) {
   const declaredNames = buildDeclaredMcpNames(explicit, mcpRefStrings);
-  for (const decl of materialized) {
+  for (const decl of decls) {
     if (declaredNames.has(decl.id) || declaredNames.has(unscopedTail(decl.id))) upsert(decl);
   }
 }
-function loadMcpServerDeclarations(projectDir) {
+async function loadMcpServerDeclarations(projectDir) {
   const config = resolveSkWorkspaceConfig(projectDir);
   const explicit = config.mcp_servers ?? [];
   const materialized = loadMaterializedMcpDeclarations(projectDir);
   const mcpRefStrings = collectMcpRefStrings(config.dependencies);
-  const provenanceIndex = buildMcpProvenanceIndex(config.sources ?? []);
+  const provenanceIndex = await buildMcpProvenanceIndex(config.sources ?? []);
   const byId = /* @__PURE__ */ new Map();
   const order = [];
   const upsert = (decl) => {
@@ -1808,7 +1857,8 @@ function loadMcpServerDeclarations(projectDir) {
     }
   };
   upsertCatalogMcpDecls(mcpRefStrings, provenanceIndex, upsert);
-  upsertMaterializedMcpDecls(materialized, explicit, mcpRefStrings, upsert);
+  upsertGatedMcpDecls(loadStoreStagedMcpDeclarations(projectDir), explicit, mcpRefStrings, upsert);
+  upsertGatedMcpDecls(materialized, explicit, mcpRefStrings, upsert);
   for (const decl of explicit) {
     upsert(decl);
   }
@@ -1842,5 +1892,5 @@ function resolveAgentDir(projectDir) {
 }
 
 export { COMPACTION_DEFAULTS, CanonicalRefConflictError, DEFAULT_RECIPE_ATTR, SKAILE_YAML_DEFAULT, SKAILE_YAML_SUFFIX, SK_WORKSPACE_DEFAULT_NAME, SK_WORKSPACE_SUFFIX, __resetCacheMigrationMemo, buildProvenanceIndex, checkRepoStatus, checkoutPin, cloneRepo, cloudConfigFromProfile, coerceVersion, decodeSkaileYaml, deriveSingleMaterializedMcpDeclaration, encodeSkaileYaml, ensureRepo, findWorkspaceRoot, getGlobalCacheDir, getRepoCommit, globalCacheRoot, globalSkaileDir, isWorkspaceConfigFilename, linkRepo, listSkWorkspaceConfigs, loadMcpServerDeclarations, loadSkWorkspaceConfig, matchPin, mergeLegacyEntriesInto, mergeLegacyEntriesKeyed, mergeSkWorkspaceConfigs, migrateLegacyDir, normalizeConfig, pullRepo, readLinks, resolveAgentDir, resolveAll, resolveAsset, resolveGlobalBackends, resolveGlobalSkWorkspaceConfig, resolveSkWorkspaceConfig, resolveSourcePublisher, saveSkWorkspaceConfig, scanRepo, sourceCacheKey, sourceShortName, stageMaterializedSkills, storeManifestSlug, unlinkRepo, validateAssetRecipeAttr, validateAssetRecipeFlake, workspaceConfigFilename, workspaceNameFromFilename, writeLinks };
-//# sourceMappingURL=chunk-ISA7R7PK.js.map
-//# sourceMappingURL=chunk-ISA7R7PK.js.map
+//# sourceMappingURL=chunk-YODP3STD.js.map
+//# sourceMappingURL=chunk-YODP3STD.js.map