@skaile/workspaces 0.34.0 → 0.35.0

package/dist/{chunk-BKE2E5AC.js.map → chunk-7B3CL5JT.js.map}

@@ -1 +1 @@
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checkRepoStatus,\n  applyPatch as coreApplyPatch,\n  deployedBase,\n  deployedDir,\n  ensureRepo,\n  extractForPatch,\n  factoryAssetRoots,\n  generatePatch,\n  getGlobalCacheDir,\n  getRepoCommit,\n  isDeployed,\n  parseAssetRef,\n  readLinks,\n  readLock,\n  resolveAll,\n  resolveAsset,\n  resolveRuntimeAssets,\n  resolveSkWorkspaceConfig,\n  savePatch,\n  scanRepo,\n  verifyLock,\n  writeLock,\n} from \"@skaile/workspaces/core\";\nimport { parse as parseYaml, stringify as stringifyYaml } from \"yaml\";\nimport { commitChanges } from \"./contrib.js\";\nimport type { HistoryEntry } from \"./history.js\";\nimport { appendHistory, clearHistory, getRecentHistory } from \"./history.js\";\nimport type { DeployOptions } from \"./installer.js\";\nimport { createScaffold, deployAll, removeAsset } from \"./installer.js\";\n\n/** Derive a cache slug from a source git URL (`<host>/<owner>/<repo>` → `<repo>`). */\nfunction sourceSlug(url: string): string {\n  return (\n    url\n      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The lock key is now a canonical asset ref, so this delegates to the one\n * ref parser; `AssetRef.pin` is exposed as `version` so the callers' destructuring\n * is unchanged. Stays total — callers rely on `{}`-then-`continue`, but\n * `parseAssetRef` throws, so a malformed key is caught and returned as `{}`.\n *\n * @internal Exported for unit tests; not part of the stable public surface.\n */\nexport function parseCanonicalLockKey(key: string): {\n  publisher?: string;\n  kind?: string;\n  name?: string;\n  version?: string;\n} {\n  try {\n    const ref = parseAssetRef(key);\n    return {\n      publisher: ref.publisher,\n      kind: ref.kind,\n      name: ref.name,\n      version: ref.pin,\n    };\n  } catch {\n    return {};\n  }\n}\n\nexport type { HistoryEntry } from \"./history.js\";\nexport {\n  appendHistory,\n  clearHistory,\n  getRecentHistory,\n  loadHistory,\n} from \"./history.js\";\n// Re-export sub-modules\nexport type { DeployOptions } from \"./installer.js\";\nexport { createScaffold, deployAll, removeAsset } from \"./installer.js\";\nexport type { Log } from \"./renderers.js\";\nexport { renderAgentToFramework } from \"./renderers.js\";\n// Contrib helpers (commitChanges et al.) are still used internally by the\n// patch-submit flow but are no longer part of the public API surface — the\n// `skaile repo contrib *` command tree was removed on 2026-05-12.\n\n// ── Types ────────────────────────────────────────────────────────────────────\n\n/**\n * Metadata about a repository declared in `skaile.yaml`.\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport interface RepoInfo {\n  /** Repository name as declared in `skaile.yaml`. */\n  name: string;\n  /** How the repo is sourced: cloned from a URL, mounted from a local path, or symlinked via `skaile repo link`. */\n  kind: \"local\" | \"remote\" | \"linked\";\n  /** Remote URL (present when `kind === \"remote\"`). */\n  url?: string;\n  /** Filesystem path (present when `kind === \"local\"` or `kind === \"linked\"`). */\n  path?: string;\n  /** Git branch configured for this repository. */\n  branch: string;\n  /** Whether the repository has been cloned/resolved locally. */\n  cloned: boolean;\n}\n\n/**\n * Live sync status for a repository.\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport interface RepoStatusInfo {\n  /** Repository name as declared in `skaile.yaml`. */\n  name: string;\n  /** How the repo is sourced. */\n  kind: \"local\" | \"remote\" | \"linked\";\n  /** Number of commits the local clone is behind the remote. */\n  behind: number;\n  /** `true` when the local clone matches the remote HEAD. */\n  upToDate: boolean;\n  /** Error message when status check failed. */\n  error?: string;\n}\n\n/**\n * Result of a full `skaile install` or `skaile add` run.\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport interface InstallResult {\n  /** Asset refs (`kind:name`) successfully deployed in this run. */\n  deployed: string[];\n  /** Asset refs (`kind:name`) removed because they are no longer in the resolved set. */\n  removed: string[];\n  /** Asset refs that could not be resolved in any configured repository. */\n  missing: string[];\n  /** Whether `skaile.lock.yaml` was written or updated. */\n  lockWritten: boolean;\n  /**\n   * npm packages installed as a side effect of resolving runtime asset peer\n   * deps (connectors / mounts declared in skaile.yaml). Empty when nothing\n   * needed installing or when the runtime-deps step was skipped.\n   */\n  npmInstalled?: string[];\n  /**\n   * npm packages that the runtime-deps step tried but failed to install.\n   * Non-fatal — listed for telemetry and CLI reporting.\n   */\n  npmFailed?: string[];\n}\n\n/**\n * An installed asset whose source repository is behind the remote.\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport interface OutdatedEntry {\n  /** Asset kind (`skill`, `agent`, `prompt`, `flow`, `contract`). */\n  kind: string;\n  /** Asset name as registered in the catalog. */\n  name: string;\n  /** Repository that provides this asset. */\n  publisher: string;\n  /** Version string recorded in the lock file at install time. */\n  currentVersion: string;\n  /** Number of commits the local repository is behind the remote. */\n  behind: number;\n}\n\n/**\n * A node in the resolved dependency tree (returned by `AssetManager.tree()`).\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport interface DependencyNode {\n  /** Asset ref (`kind:name`) or `\"project\"` for the root node. */\n  ref: string;\n  /** Transitive dependencies resolved by this node. */\n  children: DependencyNode[];\n}\n\n/**\n * A missing dependency detected by `AssetManager.doctor()`.\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport interface DepIssue {\n  /** Kind of the asset that has the unsatisfied requirement. */\n  assetKind: string;\n  /** Name of the asset that has the unsatisfied requirement. */\n  assetName: string;\n  /** Kind of the missing dependency. */\n  depKind: string;\n  /** Name of the missing dependency. */\n  depName: string;\n  /** `true` when the missing dependency exists in a configured repository but has not been installed. */\n  inRepos: boolean;\n}\n\n/**\n * A single deployed asset shown in the workspace overview.\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport interface OverviewEntry {\n  /** Asset kind (`skill`, `agent`, `prompt`, `flow`, `contract`). */\n  kind: string;\n  /** Asset name. */\n  name: string;\n  /** Domain the asset belongs to (from the lock file; `\"unknown\"` when unresolvable). */\n  domain: string;\n  /** Repository that provides this asset. */\n  publisher: string;\n  /** Version string from the lock file. */\n  version: string;\n  /**\n   * Sync status relative to the source repository.\n   * - `\"synced\"` — local clone matches remote HEAD\n   * - `\"outdated\"` — local clone is behind the remote\n   * - `\"local\"` — sourced from a local path, no remote to compare\n   * - `\"error\"` — status check failed\n   * - `\"unknown\"` — repository not found or lock entry missing\n   */\n  syncStatus: string;\n}\n\n/**\n * Aggregated workspace overview returned by `AssetManager.overview()`.\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport interface OverviewResult {\n  /** Entries grouped by domain, sorted alphabetically. Each group is sorted by kind then name. */\n  byDomain: Map<string, OverviewEntry[]>;\n  /** Total number of deployed assets. */\n  total: number;\n  /** Sync status for each configured repository. */\n  repos: RepoStatusInfo[];\n}\n\n// ── AssetManager ─────────────────────────────────────────────────────────────\n\n/**\n * Options for constructing an {@link AssetManager}.\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport interface AssetManagerOptions {\n  /** Absolute or relative path to the workspace root (must contain `skaile.yaml`). */\n  projectDir: string;\n  /**\n   * Agent framework to target for asset deployment.\n   * Determines which framework directories (``.claude/``, ``.omp/``, etc.) are used.\n   * Defaults to `\"claude-code\"`.\n   */\n  driverTarget?: DriverTarget;\n  /**\n   * When `true`, assets are installed into the global Skaile cache rather than the\n   * project workspace. Skips `skaile.yaml` dependency updates.\n   */\n  global?: boolean;\n}\n\n/** Canonical git URL identity for the bundled factory source. Never fetched —\n * the bytes live inside the package (`factory-assets/`); the URL is only the\n * match key the provenance walker and `candidateToCatalogEntry` key off. */\nconst FACTORY_SOURCE_URL = \"https://github.com/skaile-ai/ai-assets\";\n\n/**\n * Locate the built-in first-party skills/bundles shipped inside the package.\n *\n * Resolves through the shared {@link factoryAssetRoots} helper — the\n * `SKAILE_FACTORY_ASSETS_DIR` override layer (when set) ahead of the bundled\n * tree (in-repo source during dev, `dist/factory-assets/` after install), so a\n * container's override is honoured here identically to `serve`. Returns the\n * highest-precedence root that carries a `skaile.manifest.yaml` (the publication\n * manifest that names the source's publisher), or `null` when none qualifies —\n * the factory source is then simply not injected rather than erroring.\n */\nfunction resolveFactoryAssetsDir(): string | null {\n  for (const dir of factoryAssetRoots()) {\n    if (existsSync(join(dir, \"skaile.manifest.yaml\"))) return dir;\n  }\n  return null;\n}\n\n/** Read the declared `publisher` from a source's root `skaile.manifest.yaml`. */\nfunction readDeclaredPublisher(sourceDir: string): string | undefined {\n  try {\n    const raw = parseYaml(readFileSync(join(sourceDir, \"skaile.manifest.yaml\"), \"utf8\")) as {\n      publisher?: unknown;\n    } | null;\n    return raw && typeof raw.publisher === \"string\" && raw.publisher.length > 0\n      ? raw.publisher\n      : undefined;\n  } catch {\n    return undefined;\n  }\n}\n\n/**\n * The bundled factory source `{ dir, publisher }`, or `null` when no usable\n * bundle is present. Resolved once per process — the package location and the\n * bundled `skaile.manifest.yaml` are immutable for the process lifetime, so the\n * `require.resolve` + `existsSync` probes + YAML parse run a single time rather\n * than on every `loadConfig()` call. `undefined` = not yet computed.\n */\nlet factorySourceCache: { dir: string; publisher: string } | null | undefined;\n\nfunction resolveFactorySource(): { dir: string; publisher: string } | null {\n  if (factorySourceCache !== undefined) return factorySourceCache;\n  const dir = resolveFactoryAssetsDir();\n  const publisher = dir ? readDeclaredPublisher(dir) : undefined;\n  factorySourceCache = dir && publisher ? { dir, publisher } : null;\n  return factorySourceCache;\n}\n\n/**\n * Programmatic API for managing AI assets in a Skaile workspace.\n *\n * `AssetManager` wraps repository management, catalog search, asset installation,\n * lock-file tracking, patch workflows, and workspace diagnostics. The CLI delegates\n * all `skaile catalog`, `skaile repo`, `skaile install`, `skaile add`, and\n * `skaile init` commands to this class.\n *\n * @example\n * ```typescript\n * import { AssetManager } from \"@skaile/workspaces/asset-manager\";\n *\n * const am = new AssetManager({ projectDir: \"/my-project\" });\n *\n * // Install all dependencies declared in skaile.yaml\n * const result = await am.install();\n * console.log(`Deployed: ${result.deployed.join(\", \")}`);\n *\n * // Add a single skill (resolves transitive deps, updates skaile.yaml)\n * const deployed = am.add(\"skill:my-skill\");\n *\n * // Search the catalog\n * const skills = am.search(\"code review\", \"skill\");\n * ```\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport class AssetManager {\n  /** Resolved absolute path to the workspace root. */\n  readonly projectDir: string;\n  /** Agent framework driver target used for all deploy operations. */\n  readonly driverTarget: DriverTarget;\n  /** Whether this instance operates in global-install mode. */\n  readonly global: boolean;\n\n  constructor(opts: AssetManagerOptions) {\n    this.projectDir = resolve(opts.projectDir);\n    this.driverTarget = opts.driverTarget ?? (\"claude-code\" as DriverTarget);\n    this.global = opts.global ?? false;\n  }\n\n  private get reposDir(): string {\n    return join(this.projectDir, \".skaile\", \"repos\");\n  }\n\n  private get lockPath(): string {\n    return join(this.projectDir, \"skaile.lock.yaml\");\n  }\n\n  private get patchDir(): string {\n    return join(this.projectDir, \".skaile\", \"patches\");\n  }\n\n  private get deployOpts(): DeployOptions {\n    return { driverTarget: this.driverTarget, global: this.global, cwd: this.projectDir };\n  }\n\n  private loadConfig(): {\n    repositories: Record<string, SourceDeclaration>;\n    sources: SourceEntry[];\n    stores: StoreEntry[];\n    dependencies: string[];\n    overrides: OverrideEntry[];\n    patches: Record<string, string>;\n    config: SkWorkspaceConfig;\n  } {\n    // resolveSkWorkspaceConfig runs the canonical normalizer and throws on\n    // legacy keys (`repositories:` / `ai_resources:`) — propagate to the caller.\n    const config = resolveSkWorkspaceConfig(this.projectDir);\n\n    const sources = config.sources ?? [];\n    const stores = config.stores ?? [];\n    const dependencies = config.dependencies ?? [];\n    const overrides = config.overrides ?? [];\n    const patches = config.patches ?? {};\n\n    // Internal install-pipeline map: slug (derived from the source URL) →\n    // SourceDeclaration pointing at the machine-cache clone under\n    // ~/.skaile/sources/<slug>/. The slug is also the cache key for ensureRepo.\n    const skaileHome = process.env.SKAILE_HOME ?? join(homedir(), \".skaile\");\n    const sourcesDir = join(skaileHome, \"sources\");\n    const repositories: Record<string, SourceDeclaration> = {};\n    for (const s of sources) {\n      const slug = sourceSlug(s.url);\n      if (repositories[slug]) continue;\n      repositories[slug] = { path: join(sourcesDir, slug), url: s.url };\n    }\n\n    // Implicit built-in source: the first-party assets shipped inside the\n    // package (`dist/factory-assets/`). Always available, zero config — keyed by\n    // its declared publisher so refs (`kind:@<publisher>/name`) and `info`\n    // resolve cleanly. Skipped when the user already declares the same source\n    // explicitly (avoids duplicate catalog entries) or when no bundle is present.\n    const factory = resolveFactorySource();\n    const factoryUrl = normalizeRepoUrl(FACTORY_SOURCE_URL);\n    const alreadyDeclared = Object.values(repositories).some(\n      (d) => d.url !== undefined && normalizeRepoUrl(d.url) === factoryUrl,\n    );\n    if (factory && !alreadyDeclared && !repositories[factory.publisher]) {\n      repositories[factory.publisher] = {\n        path: factory.dir,\n        url: FACTORY_SOURCE_URL,\n        factory: true,\n      };\n    }\n\n    return { repositories, sources, stores, dependencies, overrides, patches, config };\n  }\n\n  /** Build provenance-index clones from the resolved source declarations. */\n  private buildClones(repositories: Record<string, SourceDeclaration>): SourceClone[] {\n    const clones: SourceClone[] = [];\n    for (const [slug, decl] of Object.entries(repositories)) {\n      const localPath = this.resolveRepoDir(decl, slug);\n      if (!localPath || !existsSync(localPath)) continue;\n      const commit = getRepoCommit(localPath) ?? \"0\".repeat(40);\n      clones.push({\n        localPath,\n        sourceUrl: decl.url ?? localPath,\n        commit,\n        tag: decl.branch,\n      });\n    }\n    return clones;\n  }\n\n  /**\n   * Bridge a resolved {@link ProvenanceCandidate} to a {@link CatalogEntry} for\n   * the deploy pipeline. `source` is the absolute path to the asset's primary\n   * manifest (or its directory) inside the clone; `publisher` is set to the\n   * clone slug so `deployAll`'s repositories lookup resolves local-vs-remote.\n   */\n  private candidateToCatalogEntry(\n    c: ProvenanceCandidate,\n    repositories: Record<string, SourceDeclaration>,\n  ): CatalogEntry | null {\n    // Find the clone slug whose declaration URL matches the candidate's source.\n    let slug: string | undefined;\n    let cloneDir: string | undefined;\n    for (const [s, decl] of Object.entries(repositories)) {\n      if (decl.url === c.sourceUrl) {\n        slug = s;\n        cloneDir = this.resolveRepoDir(decl, s) ?? undefined;\n        break;\n      }\n    }\n    if (!cloneDir) {\n      // Store-resolved or unknown source — fall back to the first source clone.\n      const first = Object.entries(repositories)[0];\n      if (first) {\n        slug = first[0];\n        cloneDir = this.resolveRepoDir(first[1], first[0]) ?? undefined;\n      }\n    }\n    if (!cloneDir || !slug) return null;\n\n    const MD_BY_KIND: Record<string, string> = {\n      skill: \"SKILL.md\",\n      agent: \"AGENT.md\",\n      bundle: \"BUNDLE.md\",\n      \"mcp-server\": \"MCP.md\",\n      connector: \"CONNECTOR.md\",\n      prompt: \"PROMPT.md\",\n      contract: \"CONTRACT.md\",\n    };\n    const mdName = MD_BY_KIND[c.kind];\n    const mdRel = c.files.find((f) => (mdName ? f.path.endsWith(mdName) : false))?.path;\n    const source = mdRel ? join(cloneDir, mdRel) : cloneDir;\n\n    const entry: CatalogEntry = {\n      name: c.name,\n      kind: c.kind as CatalogEntry[\"kind\"],\n      description: c.description ?? \"\",\n      source,\n      publisher: slug,\n      version: c.version,\n      requires: [],\n      // Manifest-declared deps are authoritative for the candidate's deps.\n      dependencies: c.deps ?? [],\n      metadata: c.metadata,\n    };\n    if (c.category != null) entry.category = c.category;\n    if (c.keywords && c.keywords.length > 0) entry.keywords = c.keywords;\n    if (c.license != null) entry.license = c.license;\n    if (c.homepage != null) entry.homepage = c.homepage;\n    return entry;\n  }\n\n  // ── Install / resolve ──────────────────────────────────────────────────\n\n  /**\n   * Install all dependencies declared in `skaile.yaml`.\n   *\n   * Steps: clone/pull repositories → resolve transitive dependencies → reconcile\n   * (remove stale assets) → deploy new assets → write `skaile.lock.yaml` → record history.\n   *\n   * @param opts - Optional installation options.\n   * @param opts.locked - When `true`, restore the exact versions recorded in the existing\n   *   lock file instead of resolving from source. Throws if no lock file is found.\n   * @returns {@link InstallResult} summarising what was deployed, what was missing, and any collisions.\n   */\n  async install(opts?: { locked?: boolean }): Promise<InstallResult> {\n    const { repositories, sources, stores, dependencies, overrides, patches } = this.loadConfig();\n\n    if (opts?.locked) {\n      return this.installLocked(repositories, patches);\n    }\n\n    // 1. Ensure all source clones are present/up to date.\n    const cloneError = this.ensureSourceClones(repositories, sources);\n    if (cloneError) return cloneError;\n\n    // 2. Build the provenance index from the clones and resolve.\n    const provenanceIndex = buildProvenanceIndex(this.buildClones(repositories), {\n      projectDir: this.projectDir,\n    });\n    const { resolved, missing, overridesApplied } = await resolveAll(dependencies, {\n      provenanceIndex,\n      overrides,\n      stores,\n      storeFetcher: this.buildStoreFetcher(stores),\n      projectDir: this.projectDir,\n    });\n\n    // 3. Reconcile: remove stale assets (in old lock but not in new resolved set).\n    const removed = this.reconcileRemovedAssets(resolved);\n\n    // 4. Map candidates to catalog entries and deploy.\n    const entries = resolved\n      .map((c) => this.candidateToCatalogEntry(c, repositories))\n      .filter((e): e is CatalogEntry => e !== null);\n    const deployed = deployAll(entries, repositories, patches, this.deployOpts);\n\n    // 5. Write the v2 lock file.\n    writeLock(this.lockPath, buildLockFile(resolved, overridesApplied));\n\n    // 6. Record history.\n    this.recordInstallHistory(deployed, removed);\n\n    // 7. Install npm peer deps for any mount/connector declared in skaile.yaml.\n    const { npmInstalled, npmFailed } = await this.installRuntimeAssetDeps();\n\n    return { deployed, removed, missing, lockWritten: true, npmInstalled, npmFailed };\n  }\n\n  /**\n   * Ensure all source clones are present/up to date. Returns an early\n   * {@link InstallResult} describing the failed source on the first error, or\n   * `null` when every clone succeeds.\n   */\n  private ensureSourceClones(\n    repositories: Record<string, SourceDeclaration>,\n    sources: SourceEntry[],\n  ): InstallResult | null {\n    const pinBySlug = new Map(sources.map((s) => [sourceSlug(s.url), s.pin]));\n    for (const [name, decl] of Object.entries(repositories)) {\n      try {\n        ensureRepo(decl, name, this.reposDir, {\n          projectDir: this.projectDir,\n          pin: pinBySlug.get(name),\n        });\n      } catch (err) {\n        return {\n          deployed: [],\n          removed: [],\n          missing: [`source:${name} (${err instanceof Error ? err.message : String(err)})`],\n          lockWritten: false,\n        };\n      }\n    }\n    return null;\n  }\n\n  /**\n   * Remove stale assets — those recorded in the old lock but absent from the\n   * newly resolved set. Returns the list of removed refs.\n   */\n  private reconcileRemovedAssets(resolved: ProvenanceCandidate[]): string[] {\n    const oldLock = this.tryReadLock();\n    const resolvedRefs = new Set(\n      resolved.map((c) => `${c.publisher}/${c.kind}:${c.name}@${c.version}`),\n    );\n    const removed: string[] = [];\n    if (oldLock) {\n      for (const ref of Object.keys(oldLock.assets)) {\n        if (!resolvedRefs.has(ref)) {\n          const { kind, name } = parseCanonicalLockKey(ref);\n          if (kind && name) {\n            removeAsset(kind, name, this.deployOpts);\n            removed.push(ref);\n          }\n        }\n      }\n    }\n    return removed;\n  }\n\n  /** Append `add`/`remove` history entries for a completed install reconcile. */\n  private recordInstallHistory(deployed: string[], removed: string[]): void {\n    for (const ref of deployed) {\n      appendHistory(this.projectDir, {\n        ref,\n        action: \"add\",\n        timestamp: new Date().toISOString(),\n        context: this.global ? \"global\" : \"project\",\n      });\n    }\n    for (const ref of removed) {\n      appendHistory(this.projectDir, {\n        ref,\n        action: \"remove\",\n        timestamp: new Date().toISOString(),\n        context: this.global ? \"global\" : \"project\",\n      });\n    }\n  }\n\n  /** Read the lock, returning null on a legacy v1 lock instead of throwing. */\n  private tryReadLock(): LockFile | null {\n    try {\n      return readLock(this.lockPath);\n    } catch {\n      return null;\n    }\n  }\n\n  /** Build a store fetcher from the configured stores, or undefined when none. */\n  private buildStoreFetcher(stores: StoreEntry[]): StoreFetcher | undefined {\n    if (stores.length === 0) return undefined;\n    return {\n      getInstallManifest: async (storeUrl, ref) => {\n        const { RemoteCatalogSource, CatalogHttpError } = await import(\n          \"@skaile/workspaces/library\"\n        );\n        const src = new RemoteCatalogSource({ baseUrl: storeUrl });\n        try {\n          const m = await src.getInstallManifest(ref);\n          return {\n            sourceUrl: m.source.url,\n            commit: m.source.commitSha,\n            sha256: m.sha256,\n            files: m.files,\n          };\n        } catch (err) {\n          if (err instanceof CatalogHttpError && err.status === 404) return null;\n          throw err;\n        }\n      },\n      getCanonicalDigest: async (storeUrl, ref) => {\n        const { RemoteCatalogSource } = await import(\"@skaile/workspaces/library\");\n        const src = new RemoteCatalogSource({ baseUrl: storeUrl });\n        return src.getCanonicalDigest(ref);\n      },\n    };\n  }\n\n  /**\n   * Resolve runtime assets and install any missing npm peer deps.\n   *\n   * - Required deps: installed via `bun add --optional`. Failure is recorded\n   *   in `npmFailed` but does not throw — install() proceeds so users get a\n   *   useful error message rather than a hung command.\n   * - Optional deps: not installed automatically (would force every consumer\n   *   to pull every connector's deps). Future: add a flag to opt in.\n   */\n  private async installRuntimeAssetDeps(): Promise<{\n    npmInstalled: string[];\n    npmFailed: string[];\n  }> {\n    const npmInstalled: string[] = [];\n    const npmFailed: string[] = [];\n    let runtimeAssets: Awaited<ReturnType<typeof resolveRuntimeAssets>> | null = null;\n    try {\n      runtimeAssets = await resolveRuntimeAssets(this.projectDir);\n    } catch {\n      // Non-fatal — projects with no skaile.yaml or unresolvable factory-assets\n      // simply have no runtime deps to install.\n      return { npmInstalled, npmFailed };\n    }\n\n    const required = runtimeAssets.requiredNpmDeps.required;\n    if (required.length === 0) return { npmInstalled, npmFailed };\n\n    const { findMissingPackages, installNpmPackages } = await import(\n      \"@skaile/workspaces/connectors\"\n    );\n    const missing = findMissingPackages(required, this.projectDir);\n    if (missing.length === 0) return { npmInstalled, npmFailed };\n\n    const result = await installNpmPackages(missing, this.projectDir);\n    if (result.success) {\n      npmInstalled.push(...missing);\n    } else {\n      npmFailed.push(...missing);\n    }\n    return { npmInstalled, npmFailed };\n  }\n\n  private installLocked(\n    repositories: Record<string, SourceDeclaration>,\n    patches: Record<string, string>,\n  ): InstallResult {\n    const lock = this.tryReadLock();\n    if (!lock) {\n      throw new Error(\"No lock file found. Run `skaile install` first.\");\n    }\n\n    // Ensure every contributing source clone exists at its pinned commit. Sources\n    // are keyed by URL slug; the lock's `sources[]` carries the URL + commit.\n    const declBySlug = new Map(Object.entries(repositories));\n    for (const src of lock.sources) {\n      const slug = sourceSlug(src.url);\n      const decl = declBySlug.get(slug) ?? { url: src.url };\n      ensureRepo(decl, slug, this.reposDir, { projectDir: this.projectDir, pin: src.commit });\n    }\n\n    // Resolve a source URL to its on-disk clone for verification.\n    const resolveCloneDir = (sourceUrl: string): string | null => {\n      const slug = sourceSlug(sourceUrl);\n      const decl = declBySlug.get(slug) ?? { url: sourceUrl };\n      return this.resolveRepoDir(decl, slug);\n    };\n\n    // Verify integrity against the v2 lock.\n    const verification = verifyLock(lock, resolveCloneDir);\n    if (!verification.ok) {\n      const issues = [\n        ...verification.drifted.map((r) => `drifted: ${r}`),\n        ...verification.missing.map((r) => `missing: ${r}`),\n      ];\n      throw new Error(`Lock file verification failed:\\n  ${issues.join(\"\\n  \")}`);\n    }\n\n    // Rebuild catalog entries from the lock and deploy.\n    const resolved: CatalogEntry[] = [];\n    for (const [ref, entry] of Object.entries(lock.assets)) {\n      const { publisher, kind, name } = parseCanonicalLockKey(ref);\n      if (!publisher || !kind || !name) continue;\n      const slug = sourceSlug(entry.source.url);\n      const cloneDir = resolveCloneDir(entry.source.url) ?? join(this.reposDir, slug);\n      const mdRel =\n        entry.files.find((f) => /\\.(md|yaml)$/i.test(f.path))?.path ?? entry.files[0]?.path ?? \"\";\n      resolved.push({\n        name,\n        kind: kind as CatalogEntry[\"kind\"],\n        description: \"\",\n        source: mdRel ? join(cloneDir, mdRel) : cloneDir,\n        publisher: slug,\n        version: entry.source.commit,\n        requires: [],\n        dependencies: [],\n      });\n      // Ensure the repositories map has an entry for deployAll's local/remote check.\n      if (!repositories[slug]) repositories[slug] = { url: entry.source.url, path: cloneDir };\n    }\n\n    const deployed = deployAll(resolved, repositories, patches, this.deployOpts);\n    return { deployed, removed: [], missing: [], lockWritten: false };\n  }\n\n  /**\n   * Add a single asset (and its transitive dependencies) to the workspace.\n   *\n   * Resolves `ref`, deploys the asset and all requirements, then records the ref\n   * in `skaile.yaml` `dependencies` so subsequent `skaile install` runs re-deploy it.\n   *\n   * @param ref - Asset ref in `kind:name` or `repo/kind:name` form (e.g. `skill:my-skill`).\n   * @returns Array of asset refs that were deployed in this call.\n   * @throws When the asset cannot be found in any configured repository.\n   */\n  async add(ref: string): Promise<string[]> {\n    const { repositories, stores, overrides, patches } = this.loadConfig();\n    const parsed = parseAssetRef(ref);\n\n    // Ensure clones.\n    for (const [name, decl] of Object.entries(repositories)) {\n      try {\n        ensureRepo(decl, name, this.reposDir, { projectDir: this.projectDir });\n      } catch {}\n    }\n\n    const provenanceIndex = buildProvenanceIndex(this.buildClones(repositories), {\n      projectDir: this.projectDir,\n    });\n    const { resolved, missing } = await resolveAll([ref], {\n      provenanceIndex,\n      overrides,\n      stores,\n      storeFetcher: this.buildStoreFetcher(stores),\n      projectDir: this.projectDir,\n    });\n    if (resolved.length === 0) {\n      throw new Error(\n        `Asset not found: ${ref}${missing.length ? ` (missing: ${missing.join(\", \")})` : \"\"}`,\n      );\n    }\n\n    const entries = resolved\n      .map((c) => this.candidateToCatalogEntry(c, repositories))\n      .filter((e): e is CatalogEntry => e !== null);\n    const deployed = deployAll(entries, repositories, patches, this.deployOpts);\n\n    // Add to skaile.yaml dependencies (canonical ref string).\n    this.addDependencyToConfig(ref);\n\n    for (const d of deployed) {\n      appendHistory(this.projectDir, {\n        ref: d,\n        action: \"add\",\n        timestamp: new Date().toISOString(),\n        context: this.global ? \"global\" : \"project\",\n      });\n    }\n\n    return deployed;\n  }\n\n  /**\n   * Remove a deployed asset and unregister it from `skaile.yaml`.\n   *\n   * @param ref - Asset ref in `kind:name` form (e.g. `skill:my-skill`).\n   * @returns `true` if the asset was found and removed, `false` if it was not deployed.\n   */\n  remove(ref: string): boolean {\n    const parsed = parseAssetRef(ref);\n    const ok = removeAsset(parsed.kind, parsed.name, this.deployOpts);\n    if (ok) {\n      const depRef = `${parsed.kind}:${parsed.name}`;\n      this.removeDependencyFromConfig(depRef);\n\n      appendHistory(this.projectDir, {\n        ref: depRef,\n        action: \"remove\",\n        timestamp: new Date().toISOString(),\n        context: this.global ? \"global\" : \"project\",\n      });\n    }\n    return ok;\n  }\n\n  // ── Query ──────────────────────────────────────────────────────────────\n\n  /**\n   * Search the catalog across all configured repositories.\n   *\n   * @param query - Substring to match against entry names and descriptions (case-insensitive).\n   *   Omit to return all entries.\n   * @param kind - Filter by asset kind (`\"skill\"`, `\"agent\"`, `\"prompt\"`, `\"flow\"`, `\"contract\"`).\n   *   Omit to return all kinds.\n   * @returns Array of matching {@link CatalogEntry} objects from all accessible repositories.\n   */\n  search(query?: string, kind?: string): CatalogEntry[] {\n    const { repositories } = this.loadConfig();\n    let all: CatalogEntry[] = [];\n\n    for (const [name, decl] of Object.entries(repositories)) {\n      const repoDir = this.resolveRepoDir(decl, name);\n      if (!repoDir) continue;\n      all = [...all, ...scanRepo(repoDir, name)];\n    }\n\n    if (kind) all = all.filter((e) => e.kind === kind);\n    if (query) {\n      const q = query.toLowerCase();\n      all = all.filter(\n        (e) => e.name.toLowerCase().includes(q) || e.description.toLowerCase().includes(q),\n      );\n    }\n    return all;\n  }\n\n  /**\n   * Look up a single asset's full catalog entry.\n   *\n   * @param ref - Asset ref in `kind:name` or `repo/kind:name` form.\n   * @returns The matching {@link CatalogEntry}, or `null` when not found.\n   */\n  info(ref: string): CatalogEntry | null {\n    const { repositories } = this.loadConfig();\n    const parsed = parseAssetRef(ref);\n\n    for (const [name, decl] of Object.entries(repositories)) {\n      const repoDir = this.resolveRepoDir(decl, name);\n      if (!repoDir) continue;\n      // Match on the entry's scanned (manifest) publisher, not the repo map key\n      // (= URL slug). The two are unrelated identities under canonical schema.\n      const entries = scanRepo(repoDir, name);\n      const match = entries.find(\n        (e) =>\n          e.kind === parsed.kind &&\n          e.name === parsed.name &&\n          (!parsed.publisher || e.publisher === parsed.publisher),\n      );\n      if (match) return match;\n    }\n    return null;\n  }\n\n  /**\n   * List all assets currently deployed in the workspace (or global cache).\n   *\n   * Scans the framework deploy directories rather than the lock file, so it\n   * also returns assets that were installed manually or outside of `skaile install`.\n   *\n   * @param kind - Filter by asset kind. Omit to return all kinds.\n   * @returns Shallow {@link CatalogEntry} objects (description and version will be empty).\n   */\n  listDeployed(kind?: string): CatalogEntry[] {\n    // Bundles are dependency groups, not deployed as files — exclude from scan\n    const kinds = (\n      kind ? [kind] : [\"skill\", \"agent\", \"prompt\", \"flow\", \"contract\"]\n    ) as AiComponent[];\n    const result: CatalogEntry[] = [];\n    const seen = new Set<string>();\n    for (const k of kinds) {\n      try {\n        const base = deployedBase(k, this.driverTarget, this.global, this.projectDir);\n        if (!existsSync(base)) continue;\n        for (const item of readdirSync(base, { withFileTypes: true })) {\n          // Directories and symlinks use the directory name directly (skills, omp agents, etc.)\n          // Files use the stem without extension (claude-code agents → .md, codex agents → .toml,\n          // prompts → .prompt.md, flows → .flow.yaml/.flow.json)\n          let name: string;\n          if (item.isDirectory() || item.isSymbolicLink()) {\n            name = item.name;\n          } else if (item.isFile()) {\n            name = item.name\n              .replace(/\\.prompt\\.md$/, \"\")\n              .replace(/\\.flow\\.(yaml|json)$/, \"\")\n              .replace(/\\.bundle\\.yaml$/, \"\")\n              .replace(/\\.(md|toml|yaml|json)$/, \"\");\n          } else {\n            continue;\n          }\n          const key = `${k}:${name}`;\n          if (seen.has(key)) continue;\n          seen.add(key);\n          result.push({\n            name,\n            kind: k as any,\n            description: \"\",\n            source: join(base, item.name),\n            version: \"\",\n            requires: [],\n            dependencies: [],\n          });\n        }\n      } catch {}\n    }\n    return result;\n  }\n\n  /**\n   * Build an aggregated workspace overview with domain grouping and sync status.\n   *\n   * Combines deployed assets, lock file metadata, and live repository status\n   * into a single structured result. Used by `skaile status`.\n   *\n   * @returns {@link OverviewResult} with entries grouped by domain and per-repo sync status.\n   */\n  overview(): OverviewResult {\n    const { repositories } = this.loadConfig();\n    const lock = this.tryReadLock();\n    const deployed = this.listDeployed();\n\n    const repoStatuses = this.buildRepoStatuses(repositories);\n    const lockByKindName = indexLockByKindName(lock);\n\n    // Build entries with publisher + sync info. Domain grouping is by publisher\n    // now that the lock no longer records a project-local domain.\n    const entries: OverviewEntry[] = [];\n    for (const d of deployed) {\n      const lockEntry = lockByKindName.get(`${d.kind}:${d.name}`);\n      const publisher = lockEntry?.publisher ?? \"\";\n      const version = lockEntry?.version ?? \"\";\n      const slug = lockEntry ? sourceSlug(lockEntry.url) : \"\";\n      const syncStatus = slug ? computeSyncStatus(repoStatuses.get(slug)) : \"unknown\";\n      const domain = publisher || \"unknown\";\n      entries.push({ kind: d.kind, name: d.name, domain, publisher, version, syncStatus });\n    }\n\n    return {\n      byDomain: groupAndSortByDomain(entries),\n      total: entries.length,\n      repos: [...repoStatuses.values()],\n    };\n  }\n\n  /** Collect live sync status for every configured repository, keyed by name. */\n  private buildRepoStatuses(\n    repositories: Record<string, SourceDeclaration>,\n  ): Map<string, RepoStatusInfo> {\n    const repoStatuses = new Map<string, RepoStatusInfo>();\n    for (const [name, decl] of Object.entries(repositories)) {\n      const status = checkRepoStatus(decl, name, this.reposDir);\n      repoStatuses.set(name, {\n        name,\n        kind: status.kind,\n        behind: status.behind,\n        upToDate: status.upToDate,\n        error: status.error,\n      });\n    }\n    return repoStatuses;\n  }\n\n  /**\n   * Build the resolved dependency tree from the lock file.\n   *\n   * @returns Root {@link DependencyNode} with `ref === \"project\"` whose children\n   *   are the directly-declared dependencies, each with their own transitive subtrees.\n   *   Returns a single node with `ref === \"(no lock file)\"` when no lock exists.\n   */\n  tree(): DependencyNode {\n    const lock = this.tryReadLock();\n    if (!lock) return { ref: \"(no lock file)\", children: [] };\n\n    // v2 lock no longer records per-asset parent provenance — every locked asset\n    // is shown as a direct child of the project (flat tree).\n    return {\n      ref: \"project\",\n      children: Object.keys(lock.assets).map((ref) => ({ ref, children: [] })),\n    };\n  }\n\n  /**\n   * Explain why an asset is installed by tracing its dependency chain in the lock file.\n   *\n   * @param ref - Asset ref in `kind:name` form.\n   * @returns Chain of refs from the asset back to `\"direct (skaile.yaml)\"`, or `[]` when\n   *   the asset is not in the lock file.\n   */\n  why(ref: string): string[] {\n    const lock = this.tryReadLock();\n    if (!lock) return [];\n    if (!lock.assets[ref]) return []; // not in lock file\n    // v2 lock no longer records a dep chain — every locked asset is reported as\n    // directly declared. (Transitive provenance reconstruction is out of scope.)\n    return [ref, \"direct (skaile.yaml)\"];\n  }\n\n  /**\n   * List installed assets whose source repository is behind the remote.\n   *\n   * Only remote repositories (not local paths) are checked for staleness.\n   *\n   * @returns Array of {@link OutdatedEntry} objects, one per asset in a repository\n   *   that has commits not yet pulled locally.\n   */\n  outdated(): OutdatedEntry[] {\n    const { repositories } = this.loadConfig();\n    const lock = this.tryReadLock();\n    if (!lock) return [];\n\n    const result: OutdatedEntry[] = [];\n    for (const src of lock.sources) {\n      const slug = sourceSlug(src.url);\n      const decl = repositories[slug];\n      if (!decl || decl.path) continue; // skip unknown / local sources\n      const status = checkRepoStatus(decl, slug, this.reposDir);\n      if (status.behind <= 0) continue;\n      for (const [ref, entry] of Object.entries(lock.assets)) {\n        if (entry.source.url !== src.url) continue;\n        const { publisher, kind, name, version } = parseCanonicalLockKey(ref);\n        if (!kind || !name) continue;\n        result.push({\n          kind,\n          name,\n          publisher: publisher ?? slug,\n          currentVersion: version ?? \"\",\n          behind: status.behind,\n        });\n      }\n    }\n    return result;\n  }\n\n  /**\n   * Produce a unified diff between the deployed asset and its catalog source.\n   *\n   * Useful for detecting manual edits to deployed files or verifying that a patch\n   * was applied correctly.\n   *\n   * @param ref - Asset ref in `kind:name` form.\n   * @returns Unified diff string, or `null` when there are no differences or the\n   *   asset is not deployed/resolvable.\n   */\n  diff(ref: string): string | null {\n    const parsed = parseAssetRef(ref);\n    const entry = this.info(ref);\n    if (!entry) return null;\n\n    const deployedPath = join(\n      deployedBase(parsed.kind as AiComponent, this.driverTarget, this.global, this.projectDir),\n      parsed.name,\n    );\n    if (!existsSync(deployedPath) || !existsSync(entry.source)) return null;\n\n    const r = spawnSync(\"diff\", [\"-ruN\", entry.source, deployedPath], { encoding: \"utf8\" });\n    return r.status === 1 ? r.stdout : null;\n  }\n\n  // ── Lock ───────────────────────────────────────────────────────────────\n\n  /**\n   * Resolve all declared dependencies and write (or overwrite) `skaile.lock.yaml`.\n   *\n   * Performs repository sync and full dependency resolution without deploying assets.\n   * Use this to regenerate the lock file after manually editing `skaile.yaml`.\n   *\n   * @returns The written {@link LockFile} data.\n   */\n  async lock(): Promise<LockFile> {\n    const { repositories, stores, dependencies, overrides } = this.loadConfig();\n\n    for (const [name, decl] of Object.entries(repositories)) {\n      try {\n        ensureRepo(decl, name, this.reposDir, { projectDir: this.projectDir });\n      } catch {}\n    }\n\n    const provenanceIndex = buildProvenanceIndex(this.buildClones(repositories), {\n      projectDir: this.projectDir,\n    });\n    const { resolved, overridesApplied } = await resolveAll(dependencies, {\n      provenanceIndex,\n      overrides,\n      stores,\n      storeFetcher: this.buildStoreFetcher(stores),\n      projectDir: this.projectDir,\n    });\n    const lockData = buildLockFile(resolved, overridesApplied);\n    writeLock(this.lockPath, lockData);\n    return lockData;\n  }\n\n  // ── Patch workflow ─────────────────────────────────────────────────────\n\n  /**\n   * Extract a deployed asset into a patch working directory for editing.\n   *\n   * Copies the deployed asset to `.skaile/patches/<kind>-<name>/` so changes\n   * can be made there and then committed as a patch file via `patchCommit`.\n   *\n   * @param ref - Asset ref in `kind:name` form.\n   * @returns Absolute path to the patch working directory.\n   * @throws When the asset cannot be found in the catalog.\n   */\n  patch(ref: string): string {\n    const entry = this.info(ref);\n    if (!entry) throw new Error(`Asset not found: ${ref}`);\n    return extractForPatch(entry, this.patchDir);\n  }\n\n  /**\n   * Generate a `.patch` file from changes made in the patch working directory.\n   *\n   * Diffs the patch working directory against the original catalog source and\n   * writes the result to `.skaile/patches/<kind>-<name>.patch`.\n   *\n   * @param ref - Asset ref in `kind:name` form.\n   * @returns Absolute path to the generated `.patch` file.\n   * @throws When the patch working directory does not exist or no differences are found.\n   */\n  patchCommit(ref: string): string {\n    const parsed = parseAssetRef(ref);\n    const entry = this.info(ref);\n    if (!entry) throw new Error(`Asset not found: ${ref}`);\n\n    const patchedDir = join(this.patchDir, `${parsed.kind}-${parsed.name}`);\n    if (!existsSync(patchedDir)) {\n      throw new Error(`No patch working dir found. Run \\`skaile patch ${ref}\\` first.`);\n    }\n\n    const originalDir = dirname(entry.source);\n    const content = generatePatch(originalDir, patchedDir);\n    if (!content) throw new Error(\"No differences found.\");\n\n    const patchFile = join(this.patchDir, `${parsed.kind}-${parsed.name}.patch`);\n    savePatch(patchFile, content);\n    return patchFile;\n  }\n\n  /**\n   * Apply the committed patch file to the repository clone and open a contribution branch.\n   *\n   * Applies `.skaile/patches/<kind>-<name>.patch` to the repository clone, creates a\n   * `patch/<kind>-<name>` branch, and stages a commit — ready to push via `contribPush`.\n   *\n   * @param ref - Asset ref in `kind:name` form.\n   * @throws When the asset is not found, has no repository, or the patch file is missing.\n   */\n  patchSubmit(ref: string): void {\n    const parsed = parseAssetRef(ref);\n    const entry = this.info(ref);\n    if (!entry?.publisher) throw new Error(`Asset not found or no publisher: ${ref}`);\n\n    const { repositories } = this.loadConfig();\n    const decl = repositories[entry.publisher];\n    if (!decl?.url) throw new Error(\"Can only submit patches for remote sources.\");\n\n    // Resolve through the same helper search/info use so patch + read agree on the clone dir.\n    const repoDir = this.resolveRepoDir(decl, entry.publisher);\n    if (!repoDir) throw new Error(`Repository clone not found for ${entry.publisher}.`);\n    const branchName = `patch/${parsed.kind}-${parsed.name}`;\n\n    // Apply patch to repo clone\n    const patchFile = join(this.patchDir, `${parsed.kind}-${parsed.name}.patch`);\n    if (!existsSync(patchFile)) throw new Error(\"No patch file. Run `skaile patch-commit` first.\");\n\n    coreApplyPatch(repoDir, patchFile);\n    commitChanges(repoDir, `fix: improve ${parsed.kind} ${parsed.name}`, branchName);\n  }\n\n  /**\n   * Delete the patch working directory and patch file for an asset.\n   *\n   * @param ref - Asset ref in `kind:name` form.\n   */\n  patchRemove(ref: string): void {\n    const parsed = parseAssetRef(ref);\n    const patchFile = join(this.patchDir, `${parsed.kind}-${parsed.name}.patch`);\n    const patchedDir = join(this.patchDir, `${parsed.kind}-${parsed.name}`);\n    try {\n      rmSync(patchFile);\n    } catch {}\n    try {\n      rmSync(patchedDir, { recursive: true });\n    } catch {}\n  }\n\n  // ── Doctor ─────────────────────────────────────────────────────────────\n\n  /**\n   * Scan deployed assets for unsatisfied transitive dependencies.\n   *\n   * For each deployed asset, checks that all entries in its `requires` list are\n   * also deployed. Returns a list of issues with a flag indicating whether the\n   * missing dependency can be resolved from a configured repository.\n   *\n   * @returns Array of {@link DepIssue} objects. An empty array means the workspace is healthy.\n   */\n  doctor(): DepIssue[] {\n    const { repositories } = this.loadConfig();\n    const deployed = this.listDeployed();\n    const issues: DepIssue[] = [];\n\n    for (const entry of deployed) {\n      const full = this.info(`${entry.kind}:${entry.name}`);\n      if (!full) continue;\n      for (const req of full.requires) {\n        if (\n          !isDeployed(\n            req.kind as AiComponent,\n            req.name,\n            this.driverTarget,\n            this.global,\n            this.projectDir,\n          )\n        ) {\n          const inRepos =\n            resolveAsset({ kind: req.kind, name: req.name }, repositories, this.reposDir) !== null;\n          issues.push({\n            assetKind: entry.kind,\n            assetName: entry.name,\n            depKind: req.kind,\n            depName: req.name,\n            inRepos,\n          });\n        }\n      }\n    }\n    return issues;\n  }\n\n  // ── Scaffold ───────────────────────────────────────────────────────────\n\n  /**\n   * Create a minimal asset scaffold directory (delegates to {@link createScaffold}).\n   *\n   * @param name - Asset name (also used as the directory name).\n   * @param kind - Asset kind: `skill` | `agent` | `bundle` | `flow` | `prompt` | `contract`.\n   * @param destDir - Parent directory to create the asset in.\n   * @returns `{ ok: true, path }` on success, `{ ok: false, path: errorMessage }` if the\n   *   directory already exists.\n   */\n  create(name: string, kind: string, destDir: string): { ok: boolean; path: string } {\n    return createScaffold(name, kind, destDir);\n  }\n\n  // ── Contrib (REMOVED 2026-05-12) ───────────────────────────────────────\n  //\n  // The `contribChanges / contribDiff / contribCommit / contribPush /\n  // contribCompare` methods were retired alongside `skaile repo contrib *`.\n  // The refinement push-back workflow is being re-introduced in Phase 4 as\n  // `skaile publish` + `skaile preset push` against the Library Source model.\n\n  // ── History ────────────────────────────────────────────────────────────\n\n  /**\n   * Return recent asset action history entries, newest first.\n   *\n   * @param limit - Maximum number of entries to return. Defaults to `20`.\n   * @returns Array of {@link HistoryEntry} objects in reverse-chronological order.\n   */\n  history(limit = 20): HistoryEntry[] {\n    return getRecentHistory(this.projectDir, limit);\n  }\n\n  /**\n   * Erase all asset action history for this workspace.\n   */\n  clearHistory(): void {\n    clearHistory(this.projectDir);\n  }\n\n  // ── Clean ───────────────────────────────────────────────────────────────\n\n  /**\n   * Remove deployed assets tracked by the lock file and report unmanaged ones.\n   *\n   * With `opts.all`, also deletes `.skaile/history.yaml`, `.skaile/patches/`,\n   * `.skaile/repos/`, and `skaile.lock.yaml` — effectively resetting the workspace\n   * to a pre-install state.\n   *\n   * @param opts - Optional cleanup options.\n   * @param opts.all - When `true`, remove all Skaile-managed state in addition to deployed assets.\n   * @returns Object with `removed` (successfully cleaned refs), `skipped` (with reasons),\n   *   and `unmanaged` (deployed assets not in the lock file).\n   */\n  clean(opts?: { all?: boolean }): {\n    removed: string[];\n    skipped: Array<{ ref: string; reason: string }>;\n    unmanaged: string[];\n  } {\n    const lock = this.tryReadLock();\n    const skipped: Array<{ ref: string; reason: string }> = [];\n\n    const removed = this.cleanLockedDeployedAssets(lock);\n    const unmanaged = this.collectUnmanagedAssets(lock);\n\n    if (opts?.all) this.removeAllManagedState();\n\n    return { removed, skipped, unmanaged };\n  }\n\n  /**\n   * Remove the deployed dir of every asset tracked by the lock; missing dirs\n   * still count as removed. Returns the list of cleaned refs.\n   */\n  private cleanLockedDeployedAssets(lock: LockFile | null): string[] {\n    const removed: string[] = [];\n    if (!lock) return removed;\n    for (const ref of Object.keys(lock.assets)) {\n      const { kind, name } = parseCanonicalLockKey(ref);\n      if (!kind || !name) continue;\n      const dest = deployedDir(\n        kind as AiComponent,\n        name,\n        this.driverTarget,\n        this.global,\n        this.projectDir,\n      );\n\n      try {\n        const stat = lstatSync(dest);\n        if (stat.isSymbolicLink()) unlinkSync(dest);\n        else rmSync(dest, { recursive: true, force: true });\n        removed.push(ref);\n      } catch {\n        // Already gone — count as removed\n        removed.push(ref);\n      }\n    }\n    return removed;\n  }\n\n  /**\n   * Report deployed assets not tracked by the lock file. 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checkRepoStatus,\n  applyPatch as coreApplyPatch,\n  deployedBase,\n  deployedDir,\n  ensureRepo,\n  extractForPatch,\n  factoryAssetRoots,\n  generatePatch,\n  getGlobalCacheDir,\n  getRepoCommit,\n  isDeployed,\n  parseAssetRef,\n  readLinks,\n  readLock,\n  resolveAll,\n  resolveAsset,\n  resolveRuntimeAssets,\n  resolveSkWorkspaceConfig,\n  savePatch,\n  scanRepo,\n  verifyLock,\n  writeLock,\n} from \"@skaile/workspaces/core\";\nimport { parse as parseYaml, stringify as stringifyYaml } from \"yaml\";\nimport { commitChanges } from \"./contrib.js\";\nimport type { HistoryEntry } from \"./history.js\";\nimport { appendHistory, clearHistory, getRecentHistory } from \"./history.js\";\nimport type { DeployOptions } from \"./installer.js\";\nimport { createScaffold, deployAll, removeAsset } from \"./installer.js\";\n\n/** Derive a cache slug from a source git URL (`<host>/<owner>/<repo>` → `<repo>`). */\nfunction sourceSlug(url: string): string {\n  return (\n    url\n      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The lock key is now a canonical asset ref, so this delegates to the one\n * ref parser; `AssetRef.pin` is exposed as `version` so the callers' destructuring\n * is unchanged. Stays total — callers rely on `{}`-then-`continue`, but\n * `parseAssetRef` throws, so a malformed key is caught and returned as `{}`.\n *\n * @internal Exported for unit tests; not part of the stable public surface.\n */\nexport function parseCanonicalLockKey(key: string): {\n  publisher?: string;\n  kind?: string;\n  name?: string;\n  version?: string;\n} {\n  try {\n    const ref = parseAssetRef(key);\n    return {\n      publisher: ref.publisher,\n      kind: ref.kind,\n      name: ref.name,\n      version: ref.pin,\n    };\n  } catch {\n    return {};\n  }\n}\n\nexport type { HistoryEntry } from \"./history.js\";\nexport {\n  appendHistory,\n  clearHistory,\n  getRecentHistory,\n  loadHistory,\n} from \"./history.js\";\n// Re-export sub-modules\nexport type { DeployOptions } from \"./installer.js\";\nexport { createScaffold, deployAll, removeAsset } from \"./installer.js\";\nexport type { Log } from \"./renderers.js\";\nexport { renderAgentToFramework } from \"./renderers.js\";\n// Contrib helpers (commitChanges et al.) are still used internally by the\n// patch-submit flow but are no longer part of the public API surface — the\n// `skaile repo contrib *` command tree was removed on 2026-05-12.\n\n// ── Types ────────────────────────────────────────────────────────────────────\n\n/**\n * Metadata about a repository declared in `skaile.yaml`.\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport interface RepoInfo {\n  /** Repository name as declared in `skaile.yaml`. */\n  name: string;\n  /** How the repo is sourced: cloned from a URL, mounted from a local path, or symlinked via `skaile repo link`. */\n  kind: \"local\" | \"remote\" | \"linked\";\n  /** Remote URL (present when `kind === \"remote\"`). */\n  url?: string;\n  /** Filesystem path (present when `kind === \"local\"` or `kind === \"linked\"`). */\n  path?: string;\n  /** Git branch configured for this repository. */\n  branch: string;\n  /** Whether the repository has been cloned/resolved locally. */\n  cloned: boolean;\n}\n\n/**\n * Live sync status for a repository.\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport interface RepoStatusInfo {\n  /** Repository name as declared in `skaile.yaml`. */\n  name: string;\n  /** How the repo is sourced. */\n  kind: \"local\" | \"remote\" | \"linked\";\n  /** Number of commits the local clone is behind the remote. */\n  behind: number;\n  /** `true` when the local clone matches the remote HEAD. */\n  upToDate: boolean;\n  /** Error message when status check failed. */\n  error?: string;\n}\n\n/**\n * Result of a full `skaile install` or `skaile add` run.\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport interface InstallResult {\n  /** Asset refs (`kind:name`) successfully deployed in this run. */\n  deployed: string[];\n  /** Asset refs (`kind:name`) removed because they are no longer in the resolved set. */\n  removed: string[];\n  /** Asset refs that could not be resolved in any configured repository. */\n  missing: string[];\n  /** Whether `skaile.lock.yaml` was written or updated. */\n  lockWritten: boolean;\n  /**\n   * npm packages installed as a side effect of resolving runtime asset peer\n   * deps (connectors / mounts declared in skaile.yaml). Empty when nothing\n   * needed installing or when the runtime-deps step was skipped.\n   */\n  npmInstalled?: string[];\n  /**\n   * npm packages that the runtime-deps step tried but failed to install.\n   * Non-fatal — listed for telemetry and CLI reporting.\n   */\n  npmFailed?: string[];\n}\n\n/**\n * An installed asset whose source repository is behind the remote.\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport interface OutdatedEntry {\n  /** Asset kind (`skill`, `agent`, `prompt`, `flow`, `contract`). */\n  kind: string;\n  /** Asset name as registered in the catalog. */\n  name: string;\n  /** Repository that provides this asset. */\n  publisher: string;\n  /** Version string recorded in the lock file at install time. */\n  currentVersion: string;\n  /** Number of commits the local repository is behind the remote. */\n  behind: number;\n}\n\n/**\n * A node in the resolved dependency tree (returned by `AssetManager.tree()`).\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport interface DependencyNode {\n  /** Asset ref (`kind:name`) or `\"project\"` for the root node. */\n  ref: string;\n  /** Transitive dependencies resolved by this node. */\n  children: DependencyNode[];\n}\n\n/**\n * A missing dependency detected by `AssetManager.doctor()`.\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport interface DepIssue {\n  /** Kind of the asset that has the unsatisfied requirement. */\n  assetKind: string;\n  /** Name of the asset that has the unsatisfied requirement. */\n  assetName: string;\n  /** Kind of the missing dependency. */\n  depKind: string;\n  /** Name of the missing dependency. */\n  depName: string;\n  /** `true` when the missing dependency exists in a configured repository but has not been installed. */\n  inRepos: boolean;\n}\n\n/**\n * A single deployed asset shown in the workspace overview.\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport interface OverviewEntry {\n  /** Asset kind (`skill`, `agent`, `prompt`, `flow`, `contract`). */\n  kind: string;\n  /** Asset name. */\n  name: string;\n  /** Domain the asset belongs to (from the lock file; `\"unknown\"` when unresolvable). */\n  domain: string;\n  /** Repository that provides this asset. */\n  publisher: string;\n  /** Version string from the lock file. */\n  version: string;\n  /**\n   * Sync status relative to the source repository.\n   * - `\"synced\"` — local clone matches remote HEAD\n   * - `\"outdated\"` — local clone is behind the remote\n   * - `\"local\"` — sourced from a local path, no remote to compare\n   * - `\"error\"` — status check failed\n   * - `\"unknown\"` — repository not found or lock entry missing\n   */\n  syncStatus: string;\n}\n\n/**\n * Aggregated workspace overview returned by `AssetManager.overview()`.\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport interface OverviewResult {\n  /** Entries grouped by domain, sorted alphabetically. Each group is sorted by kind then name. */\n  byDomain: Map<string, OverviewEntry[]>;\n  /** Total number of deployed assets. */\n  total: number;\n  /** Sync status for each configured repository. */\n  repos: RepoStatusInfo[];\n}\n\n// ── AssetManager ─────────────────────────────────────────────────────────────\n\n/**\n * Options for constructing an {@link AssetManager}.\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport interface AssetManagerOptions {\n  /** Absolute or relative path to the workspace root (must contain `skaile.yaml`). */\n  projectDir: string;\n  /**\n   * Agent framework to target for asset deployment.\n   * Determines which framework directories (``.claude/``, ``.omp/``, etc.) are used.\n   * Defaults to `\"claude-code\"`.\n   */\n  driverTarget?: DriverTarget;\n  /**\n   * When `true`, assets are installed into the global Skaile cache rather than the\n   * project workspace. Skips `skaile.yaml` dependency updates.\n   */\n  global?: boolean;\n}\n\n/** Canonical git URL identity for the bundled factory source. Never fetched —\n * the bytes live inside the package (`factory-assets/`); the URL is only the\n * match key the provenance walker and `candidateToCatalogEntry` key off. */\nconst FACTORY_SOURCE_URL = \"https://github.com/skaile-ai/ai-assets\";\n\n/**\n * Locate the built-in first-party skills/bundles shipped inside the package.\n *\n * Resolves through the shared {@link factoryAssetRoots} helper — the\n * `SKAILE_FACTORY_ASSETS_DIR` override layer (when set) ahead of the bundled\n * tree (in-repo source during dev, `dist/factory-assets/` after install), so a\n * container's override is honoured here identically to `serve`. Returns the\n * highest-precedence root that carries a `skaile.manifest.yaml` (the publication\n * manifest that names the source's publisher), or `null` when none qualifies —\n * the factory source is then simply not injected rather than erroring.\n */\nfunction resolveFactoryAssetsDir(): string | null {\n  for (const dir of factoryAssetRoots()) {\n    if (existsSync(join(dir, \"skaile.manifest.yaml\"))) return dir;\n  }\n  return null;\n}\n\n/** Read the declared `publisher` from a source's root `skaile.manifest.yaml`. */\nfunction readDeclaredPublisher(sourceDir: string): string | undefined {\n  try {\n    const raw = parseYaml(readFileSync(join(sourceDir, \"skaile.manifest.yaml\"), \"utf8\")) as {\n      publisher?: unknown;\n    } | null;\n    return raw && typeof raw.publisher === \"string\" && raw.publisher.length > 0\n      ? raw.publisher\n      : undefined;\n  } catch {\n    return undefined;\n  }\n}\n\n/**\n * The bundled factory source `{ dir, publisher }`, or `null` when no usable\n * bundle is present. Resolved once per process — the package location and the\n * bundled `skaile.manifest.yaml` are immutable for the process lifetime, so the\n * `require.resolve` + `existsSync` probes + YAML parse run a single time rather\n * than on every `loadConfig()` call. `undefined` = not yet computed.\n */\nlet factorySourceCache: { dir: string; publisher: string } | null | undefined;\n\nfunction resolveFactorySource(): { dir: string; publisher: string } | null {\n  if (factorySourceCache !== undefined) return factorySourceCache;\n  const dir = resolveFactoryAssetsDir();\n  const publisher = dir ? readDeclaredPublisher(dir) : undefined;\n  factorySourceCache = dir && publisher ? { dir, publisher } : null;\n  return factorySourceCache;\n}\n\n/**\n * Programmatic API for managing AI assets in a Skaile workspace.\n *\n * `AssetManager` wraps repository management, catalog search, asset installation,\n * lock-file tracking, patch workflows, and workspace diagnostics. The CLI delegates\n * all `skaile catalog`, `skaile repo`, `skaile install`, `skaile add`, and\n * `skaile init` commands to this class.\n *\n * @example\n * ```typescript\n * import { AssetManager } from \"@skaile/workspaces/asset-manager\";\n *\n * const am = new AssetManager({ projectDir: \"/my-project\" });\n *\n * // Install all dependencies declared in skaile.yaml\n * const result = await am.install();\n * console.log(`Deployed: ${result.deployed.join(\", \")}`);\n *\n * // Add a single skill (resolves transitive deps, updates skaile.yaml)\n * const deployed = am.add(\"skill:my-skill\");\n *\n * // Search the catalog\n * const skills = am.search(\"code review\", \"skill\");\n * ```\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport class AssetManager {\n  /** Resolved absolute path to the workspace root. */\n  readonly projectDir: string;\n  /** Agent framework driver target used for all deploy operations. */\n  readonly driverTarget: DriverTarget;\n  /** Whether this instance operates in global-install mode. */\n  readonly global: boolean;\n\n  constructor(opts: AssetManagerOptions) {\n    this.projectDir = resolve(opts.projectDir);\n    this.driverTarget = opts.driverTarget ?? (\"claude-code\" as DriverTarget);\n    this.global = opts.global ?? false;\n  }\n\n  private get reposDir(): string {\n    return join(this.projectDir, \".skaile\", \"repos\");\n  }\n\n  private get lockPath(): string {\n    return join(this.projectDir, \"skaile.lock.yaml\");\n  }\n\n  private get patchDir(): string {\n    return join(this.projectDir, \".skaile\", \"patches\");\n  }\n\n  private get deployOpts(): DeployOptions {\n    return { driverTarget: this.driverTarget, global: this.global, cwd: this.projectDir };\n  }\n\n  private loadConfig(): {\n    repositories: Record<string, SourceDeclaration>;\n    sources: SourceEntry[];\n    stores: StoreEntry[];\n    dependencies: string[];\n    overrides: OverrideEntry[];\n    patches: Record<string, string>;\n    config: SkWorkspaceConfig;\n  } {\n    // resolveSkWorkspaceConfig runs the canonical normalizer and throws on\n    // legacy keys (`repositories:` / `ai_resources:`) — propagate to the caller.\n    const config = resolveSkWorkspaceConfig(this.projectDir);\n\n    const sources = config.sources ?? [];\n    const stores = config.stores ?? [];\n    const dependencies = config.dependencies ?? [];\n    const overrides = config.overrides ?? [];\n    const patches = config.patches ?? {};\n\n    // Internal install-pipeline map: slug (derived from the source URL) →\n    // SourceDeclaration pointing at the machine-cache clone under\n    // ~/.skaile/sources/<slug>/. The slug is also the cache key for ensureRepo.\n    const skaileHome = process.env.SKAILE_HOME ?? join(homedir(), \".skaile\");\n    const sourcesDir = join(skaileHome, \"sources\");\n    const repositories: Record<string, SourceDeclaration> = {};\n    for (const s of sources) {\n      const slug = sourceSlug(s.url);\n      if (repositories[slug]) continue;\n      repositories[slug] = { path: join(sourcesDir, slug), url: s.url };\n    }\n\n    // Implicit built-in source: the first-party assets shipped inside the\n    // package (`dist/factory-assets/`). Always available, zero config — keyed by\n    // its declared publisher so refs (`kind:@<publisher>/name`) and `info`\n    // resolve cleanly. Skipped when the user already declares the same source\n    // explicitly (avoids duplicate catalog entries) or when no bundle is present.\n    const factory = resolveFactorySource();\n    const factoryUrl = normalizeRepoUrl(FACTORY_SOURCE_URL);\n    const alreadyDeclared = Object.values(repositories).some(\n      (d) => d.url !== undefined && normalizeRepoUrl(d.url) === factoryUrl,\n    );\n    if (factory && !alreadyDeclared && !repositories[factory.publisher]) {\n      repositories[factory.publisher] = {\n        path: factory.dir,\n        url: FACTORY_SOURCE_URL,\n        factory: true,\n      };\n    }\n\n    return { repositories, sources, stores, dependencies, overrides, patches, config };\n  }\n\n  /** Build provenance-index clones from the resolved source declarations. */\n  private buildClones(repositories: Record<string, SourceDeclaration>): SourceClone[] {\n    const clones: SourceClone[] = [];\n    for (const [slug, decl] of Object.entries(repositories)) {\n      const localPath = this.resolveRepoDir(decl, slug);\n      if (!localPath || !existsSync(localPath)) continue;\n      const commit = getRepoCommit(localPath) ?? \"0\".repeat(40);\n      clones.push({\n        localPath,\n        sourceUrl: decl.url ?? localPath,\n        commit,\n        tag: decl.branch,\n      });\n    }\n    return clones;\n  }\n\n  /**\n   * Bridge a resolved {@link ProvenanceCandidate} to a {@link CatalogEntry} for\n   * the deploy pipeline. `source` is the absolute path to the asset's primary\n   * manifest (or its directory) inside the clone; `publisher` is set to the\n   * clone slug so `deployAll`'s repositories lookup resolves local-vs-remote.\n   */\n  private candidateToCatalogEntry(\n    c: ProvenanceCandidate,\n    repositories: Record<string, SourceDeclaration>,\n  ): CatalogEntry | null {\n    // Find the clone slug whose declaration URL matches the candidate's source.\n    let slug: string | undefined;\n    let cloneDir: string | undefined;\n    for (const [s, decl] of Object.entries(repositories)) {\n      if (decl.url === c.sourceUrl) {\n        slug = s;\n        cloneDir = this.resolveRepoDir(decl, s) ?? undefined;\n        break;\n      }\n    }\n    if (!cloneDir) {\n      // Store-resolved or unknown source — fall back to the first source clone.\n      const first = Object.entries(repositories)[0];\n      if (first) {\n        slug = first[0];\n        cloneDir = this.resolveRepoDir(first[1], first[0]) ?? undefined;\n      }\n    }\n    if (!cloneDir || !slug) return null;\n\n    const MD_BY_KIND: Record<string, string> = {\n      skill: \"SKILL.md\",\n      agent: \"AGENT.md\",\n      bundle: \"BUNDLE.md\",\n      \"mcp-server\": \"MCP.md\",\n      connector: \"CONNECTOR.md\",\n      prompt: \"PROMPT.md\",\n      contract: \"CONTRACT.md\",\n    };\n    const mdName = MD_BY_KIND[c.kind];\n    const mdRel = c.files.find((f) => (mdName ? f.path.endsWith(mdName) : false))?.path;\n    const source = mdRel ? join(cloneDir, mdRel) : cloneDir;\n\n    const entry: CatalogEntry = {\n      name: c.name,\n      kind: c.kind as CatalogEntry[\"kind\"],\n      description: c.description ?? \"\",\n      source,\n      publisher: slug,\n      version: c.version,\n      requires: [],\n      // Manifest-declared deps are authoritative for the candidate's deps.\n      dependencies: c.deps ?? [],\n      metadata: c.metadata,\n    };\n    if (c.category != null) entry.category = c.category;\n    if (c.keywords && c.keywords.length > 0) entry.keywords = c.keywords;\n    if (c.license != null) entry.license = c.license;\n    if (c.homepage != null) entry.homepage = c.homepage;\n    return entry;\n  }\n\n  // ── Install / resolve ──────────────────────────────────────────────────\n\n  /**\n   * Install all dependencies declared in `skaile.yaml`.\n   *\n   * Steps: clone/pull repositories → resolve transitive dependencies → reconcile\n   * (remove stale assets) → deploy new assets → write `skaile.lock.yaml` → record history.\n   *\n   * @param opts - Optional installation options.\n   * @param opts.locked - When `true`, restore the exact versions recorded in the existing\n   *   lock file instead of resolving from source. Throws if no lock file is found.\n   * @returns {@link InstallResult} summarising what was deployed, what was missing, and any collisions.\n   */\n  async install(opts?: { locked?: boolean }): Promise<InstallResult> {\n    const { repositories, sources, stores, dependencies, overrides, patches } = this.loadConfig();\n\n    if (opts?.locked) {\n      return this.installLocked(repositories, patches);\n    }\n\n    // 1. Ensure all source clones are present/up to date.\n    const cloneError = this.ensureSourceClones(repositories, sources);\n    if (cloneError) return cloneError;\n\n    // 2. Build the provenance index from the clones and resolve.\n    const provenanceIndex = buildProvenanceIndex(this.buildClones(repositories), {\n      projectDir: this.projectDir,\n    });\n    const { resolved, missing, overridesApplied } = await resolveAll(dependencies, {\n      provenanceIndex,\n      overrides,\n      stores,\n      storeFetcher: this.buildStoreFetcher(stores),\n      projectDir: this.projectDir,\n    });\n\n    // 3. Reconcile: remove stale assets (in old lock but not in new resolved set).\n    const removed = this.reconcileRemovedAssets(resolved);\n\n    // 4. Map candidates to catalog entries and deploy.\n    const entries = resolved\n      .map((c) => this.candidateToCatalogEntry(c, repositories))\n      .filter((e): e is CatalogEntry => e !== null);\n    const deployed = deployAll(entries, repositories, patches, this.deployOpts);\n\n    // 5. Write the v2 lock file.\n    writeLock(this.lockPath, buildLockFile(resolved, overridesApplied));\n\n    // 6. Record history.\n    this.recordInstallHistory(deployed, removed);\n\n    // 7. Install npm peer deps for any mount/connector declared in skaile.yaml.\n    const { npmInstalled, npmFailed } = await this.installRuntimeAssetDeps();\n\n    return { deployed, removed, missing, lockWritten: true, npmInstalled, npmFailed };\n  }\n\n  /**\n   * Ensure all source clones are present/up to date. Returns an early\n   * {@link InstallResult} describing the failed source on the first error, or\n   * `null` when every clone succeeds.\n   */\n  private ensureSourceClones(\n    repositories: Record<string, SourceDeclaration>,\n    sources: SourceEntry[],\n  ): InstallResult | null {\n    const pinBySlug = new Map(sources.map((s) => [sourceSlug(s.url), s.pin]));\n    for (const [name, decl] of Object.entries(repositories)) {\n      try {\n        ensureRepo(decl, name, this.reposDir, {\n          projectDir: this.projectDir,\n          pin: pinBySlug.get(name),\n        });\n      } catch (err) {\n        return {\n          deployed: [],\n          removed: [],\n          missing: [`source:${name} (${err instanceof Error ? err.message : String(err)})`],\n          lockWritten: false,\n        };\n      }\n    }\n    return null;\n  }\n\n  /**\n   * Remove stale assets — those recorded in the old lock but absent from the\n   * newly resolved set. Returns the list of removed refs.\n   */\n  private reconcileRemovedAssets(resolved: ProvenanceCandidate[]): string[] {\n    const oldLock = this.tryReadLock();\n    const resolvedRefs = new Set(\n      resolved.map((c) => `${c.publisher}/${c.kind}:${c.name}@${c.version}`),\n    );\n    const removed: string[] = [];\n    if (oldLock) {\n      for (const ref of Object.keys(oldLock.assets)) {\n        if (!resolvedRefs.has(ref)) {\n          const { kind, name } = parseCanonicalLockKey(ref);\n          if (kind && name) {\n            removeAsset(kind, name, this.deployOpts);\n            removed.push(ref);\n          }\n        }\n      }\n    }\n    return removed;\n  }\n\n  /** Append `add`/`remove` history entries for a completed install reconcile. */\n  private recordInstallHistory(deployed: string[], removed: string[]): void {\n    for (const ref of deployed) {\n      appendHistory(this.projectDir, {\n        ref,\n        action: \"add\",\n        timestamp: new Date().toISOString(),\n        context: this.global ? \"global\" : \"project\",\n      });\n    }\n    for (const ref of removed) {\n      appendHistory(this.projectDir, {\n        ref,\n        action: \"remove\",\n        timestamp: new Date().toISOString(),\n        context: this.global ? \"global\" : \"project\",\n      });\n    }\n  }\n\n  /** Read the lock, returning null on a legacy v1 lock instead of throwing. */\n  private tryReadLock(): LockFile | null {\n    try {\n      return readLock(this.lockPath);\n    } catch {\n      return null;\n    }\n  }\n\n  /** Build a store fetcher from the configured stores, or undefined when none. */\n  private buildStoreFetcher(stores: StoreEntry[]): StoreFetcher | undefined {\n    if (stores.length === 0) return undefined;\n    return {\n      getInstallManifest: async (storeUrl, ref) => {\n        const { RemoteCatalogSource, CatalogHttpError } = await import(\n          \"@skaile/workspaces/library\"\n        );\n        const src = new RemoteCatalogSource({ baseUrl: storeUrl });\n        try {\n          const m = await src.getInstallManifest(ref);\n          return {\n            sourceUrl: m.source.url,\n            commit: m.source.commitSha,\n            sha256: m.sha256,\n            files: m.files,\n          };\n        } catch (err) {\n          if (err instanceof CatalogHttpError && err.status === 404) return null;\n          throw err;\n        }\n      },\n      getCanonicalDigest: async (storeUrl, ref) => {\n        const { RemoteCatalogSource } = await import(\"@skaile/workspaces/library\");\n        const src = new RemoteCatalogSource({ baseUrl: storeUrl });\n        return src.getCanonicalDigest(ref);\n      },\n    };\n  }\n\n  /**\n   * Resolve runtime assets and install any missing npm peer deps.\n   *\n   * - Required deps: installed via `bun add --optional`. Failure is recorded\n   *   in `npmFailed` but does not throw — install() proceeds so users get a\n   *   useful error message rather than a hung command.\n   * - Optional deps: not installed automatically (would force every consumer\n   *   to pull every connector's deps). Future: add a flag to opt in.\n   */\n  private async installRuntimeAssetDeps(): Promise<{\n    npmInstalled: string[];\n    npmFailed: string[];\n  }> {\n    const npmInstalled: string[] = [];\n    const npmFailed: string[] = [];\n    let runtimeAssets: Awaited<ReturnType<typeof resolveRuntimeAssets>> | null = null;\n    try {\n      runtimeAssets = await resolveRuntimeAssets(this.projectDir);\n    } catch {\n      // Non-fatal — projects with no skaile.yaml or unresolvable factory-assets\n      // simply have no runtime deps to install.\n      return { npmInstalled, npmFailed };\n    }\n\n    const required = runtimeAssets.requiredNpmDeps.required;\n    if (required.length === 0) return { npmInstalled, npmFailed };\n\n    const { findMissingPackages, installNpmPackages } = await import(\n      \"@skaile/workspaces/connectors\"\n    );\n    const missing = findMissingPackages(required, this.projectDir);\n    if (missing.length === 0) return { npmInstalled, npmFailed };\n\n    const result = await installNpmPackages(missing, this.projectDir);\n    if (result.success) {\n      npmInstalled.push(...missing);\n    } else {\n      npmFailed.push(...missing);\n    }\n    return { npmInstalled, npmFailed };\n  }\n\n  private installLocked(\n    repositories: Record<string, SourceDeclaration>,\n    patches: Record<string, string>,\n  ): InstallResult {\n    const lock = this.tryReadLock();\n    if (!lock) {\n      throw new Error(\"No lock file found. Run `skaile install` first.\");\n    }\n\n    // Ensure every contributing source clone exists at its pinned commit. Sources\n    // are keyed by URL slug; the lock's `sources[]` carries the URL + commit.\n    const declBySlug = new Map(Object.entries(repositories));\n    for (const src of lock.sources) {\n      const slug = sourceSlug(src.url);\n      const decl = declBySlug.get(slug) ?? { url: src.url };\n      ensureRepo(decl, slug, this.reposDir, { projectDir: this.projectDir, pin: src.commit });\n    }\n\n    // Resolve a source URL to its on-disk clone for verification.\n    const resolveCloneDir = (sourceUrl: string): string | null => {\n      const slug = sourceSlug(sourceUrl);\n      const decl = declBySlug.get(slug) ?? { url: sourceUrl };\n      return this.resolveRepoDir(decl, slug);\n    };\n\n    // Verify integrity against the v2 lock.\n    const verification = verifyLock(lock, resolveCloneDir);\n    if (!verification.ok) {\n      const issues = [\n        ...verification.drifted.map((r) => `drifted: ${r}`),\n        ...verification.missing.map((r) => `missing: ${r}`),\n      ];\n      throw new Error(`Lock file verification failed:\\n  ${issues.join(\"\\n  \")}`);\n    }\n\n    // Rebuild catalog entries from the lock and deploy.\n    const resolved: CatalogEntry[] = [];\n    for (const [ref, entry] of Object.entries(lock.assets)) {\n      const { publisher, kind, name } = parseCanonicalLockKey(ref);\n      if (!publisher || !kind || !name) continue;\n      const slug = sourceSlug(entry.source.url);\n      const cloneDir = resolveCloneDir(entry.source.url) ?? join(this.reposDir, slug);\n      const mdRel =\n        entry.files.find((f) => /\\.(md|yaml)$/i.test(f.path))?.path ?? entry.files[0]?.path ?? \"\";\n      resolved.push({\n        name,\n        kind: kind as CatalogEntry[\"kind\"],\n        description: \"\",\n        source: mdRel ? join(cloneDir, mdRel) : cloneDir,\n        publisher: slug,\n        version: entry.source.commit,\n        requires: [],\n        dependencies: [],\n      });\n      // Ensure the repositories map has an entry for deployAll's local/remote check.\n      if (!repositories[slug]) repositories[slug] = { url: entry.source.url, path: cloneDir };\n    }\n\n    const deployed = deployAll(resolved, repositories, patches, this.deployOpts);\n    return { deployed, removed: [], missing: [], lockWritten: false };\n  }\n\n  /**\n   * Add a single asset (and its transitive dependencies) to the workspace.\n   *\n   * Resolves `ref`, deploys the asset and all requirements, then records the ref\n   * in `skaile.yaml` `dependencies` so subsequent `skaile install` runs re-deploy it.\n   *\n   * @param ref - Asset ref in `kind:name` or `repo/kind:name` form (e.g. `skill:my-skill`).\n   * @returns Array of asset refs that were deployed in this call.\n   * @throws When the asset cannot be found in any configured repository.\n   */\n  async add(ref: string): Promise<string[]> {\n    const { repositories, stores, overrides, patches } = this.loadConfig();\n    const parsed = parseAssetRef(ref);\n\n    // Ensure clones.\n    for (const [name, decl] of Object.entries(repositories)) {\n      try {\n        ensureRepo(decl, name, this.reposDir, { projectDir: this.projectDir });\n      } catch {}\n    }\n\n    const provenanceIndex = buildProvenanceIndex(this.buildClones(repositories), {\n      projectDir: this.projectDir,\n    });\n    const { resolved, missing } = await resolveAll([ref], {\n      provenanceIndex,\n      overrides,\n      stores,\n      storeFetcher: this.buildStoreFetcher(stores),\n      projectDir: this.projectDir,\n    });\n    if (resolved.length === 0) {\n      throw new Error(\n        `Asset not found: ${ref}${missing.length ? ` (missing: ${missing.join(\", \")})` : \"\"}`,\n      );\n    }\n\n    const entries = resolved\n      .map((c) => this.candidateToCatalogEntry(c, repositories))\n      .filter((e): e is CatalogEntry => e !== null);\n    const deployed = deployAll(entries, repositories, patches, this.deployOpts);\n\n    // Add to skaile.yaml dependencies (canonical ref string).\n    this.addDependencyToConfig(ref);\n\n    for (const d of deployed) {\n      appendHistory(this.projectDir, {\n        ref: d,\n        action: \"add\",\n        timestamp: new Date().toISOString(),\n        context: this.global ? \"global\" : \"project\",\n      });\n    }\n\n    return deployed;\n  }\n\n  /**\n   * Remove a deployed asset and unregister it from `skaile.yaml`.\n   *\n   * @param ref - Asset ref in `kind:name` form (e.g. `skill:my-skill`).\n   * @returns `true` if the asset was found and removed, `false` if it was not deployed.\n   */\n  remove(ref: string): boolean {\n    const parsed = parseAssetRef(ref);\n    const ok = removeAsset(parsed.kind, parsed.name, this.deployOpts);\n    if (ok) {\n      const depRef = `${parsed.kind}:${parsed.name}`;\n      this.removeDependencyFromConfig(depRef);\n\n      appendHistory(this.projectDir, {\n        ref: depRef,\n        action: \"remove\",\n        timestamp: new Date().toISOString(),\n        context: this.global ? \"global\" : \"project\",\n      });\n    }\n    return ok;\n  }\n\n  // ── Query ──────────────────────────────────────────────────────────────\n\n  /**\n   * Search the catalog across all configured repositories.\n   *\n   * @param query - Substring to match against entry names and descriptions (case-insensitive).\n   *   Omit to return all entries.\n   * @param kind - Filter by asset kind (`\"skill\"`, `\"agent\"`, `\"prompt\"`, `\"flow\"`, `\"contract\"`).\n   *   Omit to return all kinds.\n   * @returns Array of matching {@link CatalogEntry} objects from all accessible repositories.\n   */\n  search(query?: string, kind?: string): CatalogEntry[] {\n    const { repositories } = this.loadConfig();\n    let all: CatalogEntry[] = [];\n\n    for (const [name, decl] of Object.entries(repositories)) {\n      const repoDir = this.resolveRepoDir(decl, name);\n      if (!repoDir) continue;\n      all = [...all, ...scanRepo(repoDir, name)];\n    }\n\n    if (kind) all = all.filter((e) => e.kind === kind);\n    if (query) {\n      const q = query.toLowerCase();\n      all = all.filter(\n        (e) => e.name.toLowerCase().includes(q) || e.description.toLowerCase().includes(q),\n      );\n    }\n    return all;\n  }\n\n  /**\n   * Look up a single asset's full catalog entry.\n   *\n   * @param ref - Asset ref in `kind:name` or `repo/kind:name` form.\n   * @returns The matching {@link CatalogEntry}, or `null` when not found.\n   */\n  info(ref: string): CatalogEntry | null {\n    const { repositories } = this.loadConfig();\n    const parsed = parseAssetRef(ref);\n\n    for (const [name, decl] of Object.entries(repositories)) {\n      const repoDir = this.resolveRepoDir(decl, name);\n      if (!repoDir) continue;\n      // Match on the entry's scanned (manifest) publisher, not the repo map key\n      // (= URL slug). The two are unrelated identities under canonical schema.\n      const entries = scanRepo(repoDir, name);\n      const match = entries.find(\n        (e) =>\n          e.kind === parsed.kind &&\n          e.name === parsed.name &&\n          (!parsed.publisher || e.publisher === parsed.publisher),\n      );\n      if (match) return match;\n    }\n    return null;\n  }\n\n  /**\n   * List all assets currently deployed in the workspace (or global cache).\n   *\n   * Scans the framework deploy directories rather than the lock file, so it\n   * also returns assets that were installed manually or outside of `skaile install`.\n   *\n   * @param kind - Filter by asset kind. Omit to return all kinds.\n   * @returns Shallow {@link CatalogEntry} objects (description and version will be empty).\n   */\n  listDeployed(kind?: string): CatalogEntry[] {\n    // Bundles are dependency groups, not deployed as files — exclude from scan\n    const kinds = (\n      kind ? [kind] : [\"skill\", \"agent\", \"prompt\", \"flow\", \"contract\"]\n    ) as AiComponent[];\n    const result: CatalogEntry[] = [];\n    const seen = new Set<string>();\n    for (const k of kinds) {\n      try {\n        const base = deployedBase(k, this.driverTarget, this.global, this.projectDir);\n        if (!existsSync(base)) continue;\n        for (const item of readdirSync(base, { withFileTypes: true })) {\n          // Directories and symlinks use the directory name directly (skills, omp agents, etc.)\n          // Files use the stem without extension (claude-code agents → .md, codex agents → .toml,\n          // prompts → .prompt.md, flows → .flow.yaml/.flow.json)\n          let name: string;\n          if (item.isDirectory() || item.isSymbolicLink()) {\n            name = item.name;\n          } else if (item.isFile()) {\n            name = item.name\n              .replace(/\\.prompt\\.md$/, \"\")\n              .replace(/\\.flow\\.(yaml|json)$/, \"\")\n              .replace(/\\.bundle\\.yaml$/, \"\")\n              .replace(/\\.(md|toml|yaml|json)$/, \"\");\n          } else {\n            continue;\n          }\n          const key = `${k}:${name}`;\n          if (seen.has(key)) continue;\n          seen.add(key);\n          result.push({\n            name,\n            kind: k as any,\n            description: \"\",\n            source: join(base, item.name),\n            version: \"\",\n            requires: [],\n            dependencies: [],\n          });\n        }\n      } catch {}\n    }\n    return result;\n  }\n\n  /**\n   * Build an aggregated workspace overview with domain grouping and sync status.\n   *\n   * Combines deployed assets, lock file metadata, and live repository status\n   * into a single structured result. Used by `skaile status`.\n   *\n   * @returns {@link OverviewResult} with entries grouped by domain and per-repo sync status.\n   */\n  overview(): OverviewResult {\n    const { repositories } = this.loadConfig();\n    const lock = this.tryReadLock();\n    const deployed = this.listDeployed();\n\n    const repoStatuses = this.buildRepoStatuses(repositories);\n    const lockByKindName = indexLockByKindName(lock);\n\n    // Build entries with publisher + sync info. Domain grouping is by publisher\n    // now that the lock no longer records a project-local domain.\n    const entries: OverviewEntry[] = [];\n    for (const d of deployed) {\n      const lockEntry = lockByKindName.get(`${d.kind}:${d.name}`);\n      const publisher = lockEntry?.publisher ?? \"\";\n      const version = lockEntry?.version ?? \"\";\n      const slug = lockEntry ? sourceSlug(lockEntry.url) : \"\";\n      const syncStatus = slug ? computeSyncStatus(repoStatuses.get(slug)) : \"unknown\";\n      const domain = publisher || \"unknown\";\n      entries.push({ kind: d.kind, name: d.name, domain, publisher, version, syncStatus });\n    }\n\n    return {\n      byDomain: groupAndSortByDomain(entries),\n      total: entries.length,\n      repos: [...repoStatuses.values()],\n    };\n  }\n\n  /** Collect live sync status for every configured repository, keyed by name. */\n  private buildRepoStatuses(\n    repositories: Record<string, SourceDeclaration>,\n  ): Map<string, RepoStatusInfo> {\n    const repoStatuses = new Map<string, RepoStatusInfo>();\n    for (const [name, decl] of Object.entries(repositories)) {\n      const status = checkRepoStatus(decl, name, this.reposDir);\n      repoStatuses.set(name, {\n        name,\n        kind: status.kind,\n        behind: status.behind,\n        upToDate: status.upToDate,\n        error: status.error,\n      });\n    }\n    return repoStatuses;\n  }\n\n  /**\n   * Build the resolved dependency tree from the lock file.\n   *\n   * @returns Root {@link DependencyNode} with `ref === \"project\"` whose children\n   *   are the directly-declared dependencies, each with their own transitive subtrees.\n   *   Returns a single node with `ref === \"(no lock file)\"` when no lock exists.\n   */\n  tree(): DependencyNode {\n    const lock = this.tryReadLock();\n    if (!lock) return { ref: \"(no lock file)\", children: [] };\n\n    // v2 lock no longer records per-asset parent provenance — every locked asset\n    // is shown as a direct child of the project (flat tree).\n    return {\n      ref: \"project\",\n      children: Object.keys(lock.assets).map((ref) => ({ ref, children: [] })),\n    };\n  }\n\n  /**\n   * Explain why an asset is installed by tracing its dependency chain in the lock file.\n   *\n   * @param ref - Asset ref in `kind:name` form.\n   * @returns Chain of refs from the asset back to `\"direct (skaile.yaml)\"`, or `[]` when\n   *   the asset is not in the lock file.\n   */\n  why(ref: string): string[] {\n    const lock = this.tryReadLock();\n    if (!lock) return [];\n    if (!lock.assets[ref]) return []; // not in lock file\n    // v2 lock no longer records a dep chain — every locked asset is reported as\n    // directly declared. (Transitive provenance reconstruction is out of scope.)\n    return [ref, \"direct (skaile.yaml)\"];\n  }\n\n  /**\n   * List installed assets whose source repository is behind the remote.\n   *\n   * Only remote repositories (not local paths) are checked for staleness.\n   *\n   * @returns Array of {@link OutdatedEntry} objects, one per asset in a repository\n   *   that has commits not yet pulled locally.\n   */\n  outdated(): OutdatedEntry[] {\n    const { repositories } = this.loadConfig();\n    const lock = this.tryReadLock();\n    if (!lock) return [];\n\n    const result: OutdatedEntry[] = [];\n    for (const src of lock.sources) {\n      const slug = sourceSlug(src.url);\n      const decl = repositories[slug];\n      if (!decl || decl.path) continue; // skip unknown / local sources\n      const status = checkRepoStatus(decl, slug, this.reposDir);\n      if (status.behind <= 0) continue;\n      for (const [ref, entry] of Object.entries(lock.assets)) {\n        if (entry.source.url !== src.url) continue;\n        const { publisher, kind, name, version } = parseCanonicalLockKey(ref);\n        if (!kind || !name) continue;\n        result.push({\n          kind,\n          name,\n          publisher: publisher ?? slug,\n          currentVersion: version ?? \"\",\n          behind: status.behind,\n        });\n      }\n    }\n    return result;\n  }\n\n  /**\n   * Produce a unified diff between the deployed asset and its catalog source.\n   *\n   * Useful for detecting manual edits to deployed files or verifying that a patch\n   * was applied correctly.\n   *\n   * @param ref - Asset ref in `kind:name` form.\n   * @returns Unified diff string, or `null` when there are no differences or the\n   *   asset is not deployed/resolvable.\n   */\n  diff(ref: string): string | null {\n    const parsed = parseAssetRef(ref);\n    const entry = this.info(ref);\n    if (!entry) return null;\n\n    const deployedPath = join(\n      deployedBase(parsed.kind as AiComponent, this.driverTarget, this.global, this.projectDir),\n      parsed.name,\n    );\n    if (!existsSync(deployedPath) || !existsSync(entry.source)) return null;\n\n    const r = spawnSync(\"diff\", [\"-ruN\", entry.source, deployedPath], { encoding: \"utf8\" });\n    return r.status === 1 ? r.stdout : null;\n  }\n\n  // ── Lock ───────────────────────────────────────────────────────────────\n\n  /**\n   * Resolve all declared dependencies and write (or overwrite) `skaile.lock.yaml`.\n   *\n   * Performs repository sync and full dependency resolution without deploying assets.\n   * Use this to regenerate the lock file after manually editing `skaile.yaml`.\n   *\n   * @returns The written {@link LockFile} data.\n   */\n  async lock(): Promise<LockFile> {\n    const { repositories, stores, dependencies, overrides } = this.loadConfig();\n\n    for (const [name, decl] of Object.entries(repositories)) {\n      try {\n        ensureRepo(decl, name, this.reposDir, { projectDir: this.projectDir });\n      } catch {}\n    }\n\n    const provenanceIndex = buildProvenanceIndex(this.buildClones(repositories), {\n      projectDir: this.projectDir,\n    });\n    const { resolved, overridesApplied } = await resolveAll(dependencies, {\n      provenanceIndex,\n      overrides,\n      stores,\n      storeFetcher: this.buildStoreFetcher(stores),\n      projectDir: this.projectDir,\n    });\n    const lockData = buildLockFile(resolved, overridesApplied);\n    writeLock(this.lockPath, lockData);\n    return lockData;\n  }\n\n  // ── Patch workflow ─────────────────────────────────────────────────────\n\n  /**\n   * Extract a deployed asset into a patch working directory for editing.\n   *\n   * Copies the deployed asset to `.skaile/patches/<kind>-<name>/` so changes\n   * can be made there and then committed as a patch file via `patchCommit`.\n   *\n   * @param ref - Asset ref in `kind:name` form.\n   * @returns Absolute path to the patch working directory.\n   * @throws When the asset cannot be found in the catalog.\n   */\n  patch(ref: string): string {\n    const entry = this.info(ref);\n    if (!entry) throw new Error(`Asset not found: ${ref}`);\n    return extractForPatch(entry, this.patchDir);\n  }\n\n  /**\n   * Generate a `.patch` file from changes made in the patch working directory.\n   *\n   * Diffs the patch working directory against the original catalog source and\n   * writes the result to `.skaile/patches/<kind>-<name>.patch`.\n   *\n   * @param ref - Asset ref in `kind:name` form.\n   * @returns Absolute path to the generated `.patch` file.\n   * @throws When the patch working directory does not exist or no differences are found.\n   */\n  patchCommit(ref: string): string {\n    const parsed = parseAssetRef(ref);\n    const entry = this.info(ref);\n    if (!entry) throw new Error(`Asset not found: ${ref}`);\n\n    const patchedDir = join(this.patchDir, `${parsed.kind}-${parsed.name}`);\n    if (!existsSync(patchedDir)) {\n      throw new Error(`No patch working dir found. Run \\`skaile patch ${ref}\\` first.`);\n    }\n\n    const originalDir = dirname(entry.source);\n    const content = generatePatch(originalDir, patchedDir);\n    if (!content) throw new Error(\"No differences found.\");\n\n    const patchFile = join(this.patchDir, `${parsed.kind}-${parsed.name}.patch`);\n    savePatch(patchFile, content);\n    return patchFile;\n  }\n\n  /**\n   * Apply the committed patch file to the repository clone and open a contribution branch.\n   *\n   * Applies `.skaile/patches/<kind>-<name>.patch` to the repository clone, creates a\n   * `patch/<kind>-<name>` branch, and stages a commit — ready to push via `contribPush`.\n   *\n   * @param ref - Asset ref in `kind:name` form.\n   * @throws When the asset is not found, has no repository, or the patch file is missing.\n   */\n  patchSubmit(ref: string): void {\n    const parsed = parseAssetRef(ref);\n    const entry = this.info(ref);\n    if (!entry?.publisher) throw new Error(`Asset not found or no publisher: ${ref}`);\n\n    const { repositories } = this.loadConfig();\n    const decl = repositories[entry.publisher];\n    if (!decl?.url) throw new Error(\"Can only submit patches for remote sources.\");\n\n    // Resolve through the same helper search/info use so patch + read agree on the clone dir.\n    const repoDir = this.resolveRepoDir(decl, entry.publisher);\n    if (!repoDir) throw new Error(`Repository clone not found for ${entry.publisher}.`);\n    const branchName = `patch/${parsed.kind}-${parsed.name}`;\n\n    // Apply patch to repo clone\n    const patchFile = join(this.patchDir, `${parsed.kind}-${parsed.name}.patch`);\n    if (!existsSync(patchFile)) throw new Error(\"No patch file. Run `skaile patch-commit` first.\");\n\n    coreApplyPatch(repoDir, patchFile);\n    commitChanges(repoDir, `fix: improve ${parsed.kind} ${parsed.name}`, branchName);\n  }\n\n  /**\n   * Delete the patch working directory and patch file for an asset.\n   *\n   * @param ref - Asset ref in `kind:name` form.\n   */\n  patchRemove(ref: string): void {\n    const parsed = parseAssetRef(ref);\n    const patchFile = join(this.patchDir, `${parsed.kind}-${parsed.name}.patch`);\n    const patchedDir = join(this.patchDir, `${parsed.kind}-${parsed.name}`);\n    try {\n      rmSync(patchFile);\n    } catch {}\n    try {\n      rmSync(patchedDir, { recursive: true });\n    } catch {}\n  }\n\n  // ── Doctor ─────────────────────────────────────────────────────────────\n\n  /**\n   * Scan deployed assets for unsatisfied transitive dependencies.\n   *\n   * For each deployed asset, checks that all entries in its `requires` list are\n   * also deployed. Returns a list of issues with a flag indicating whether the\n   * missing dependency can be resolved from a configured repository.\n   *\n   * @returns Array of {@link DepIssue} objects. An empty array means the workspace is healthy.\n   */\n  doctor(): DepIssue[] {\n    const { repositories } = this.loadConfig();\n    const deployed = this.listDeployed();\n    const issues: DepIssue[] = [];\n\n    for (const entry of deployed) {\n      const full = this.info(`${entry.kind}:${entry.name}`);\n      if (!full) continue;\n      for (const req of full.requires) {\n        if (\n          !isDeployed(\n            req.kind as AiComponent,\n            req.name,\n            this.driverTarget,\n            this.global,\n            this.projectDir,\n          )\n        ) {\n          const inRepos =\n            resolveAsset({ kind: req.kind, name: req.name }, repositories, this.reposDir) !== null;\n          issues.push({\n            assetKind: entry.kind,\n            assetName: entry.name,\n            depKind: req.kind,\n            depName: req.name,\n            inRepos,\n          });\n        }\n      }\n    }\n    return issues;\n  }\n\n  // ── Scaffold ───────────────────────────────────────────────────────────\n\n  /**\n   * Create a minimal asset scaffold directory (delegates to {@link createScaffold}).\n   *\n   * @param name - Asset name (also used as the directory name).\n   * @param kind - Asset kind: `skill` | `agent` | `bundle` | `flow` | `prompt` | `contract`.\n   * @param destDir - Parent directory to create the asset in.\n   * @returns `{ ok: true, path }` on success, `{ ok: false, path: errorMessage }` if the\n   *   directory already exists.\n   */\n  create(name: string, kind: string, destDir: string): { ok: boolean; path: string } {\n    return createScaffold(name, kind, destDir);\n  }\n\n  // ── Contrib (REMOVED 2026-05-12) ───────────────────────────────────────\n  //\n  // The `contribChanges / contribDiff / contribCommit / contribPush /\n  // contribCompare` methods were retired alongside `skaile repo contrib *`.\n  // The refinement push-back workflow is being re-introduced in Phase 4 as\n  // `skaile publish` + `skaile preset push` against the Library Source model.\n\n  // ── History ────────────────────────────────────────────────────────────\n\n  /**\n   * Return recent asset action history entries, newest first.\n   *\n   * @param limit - Maximum number of entries to return. Defaults to `20`.\n   * @returns Array of {@link HistoryEntry} objects in reverse-chronological order.\n   */\n  history(limit = 20): HistoryEntry[] {\n    return getRecentHistory(this.projectDir, limit);\n  }\n\n  /**\n   * Erase all asset action history for this workspace.\n   */\n  clearHistory(): void {\n    clearHistory(this.projectDir);\n  }\n\n  // ── Clean ───────────────────────────────────────────────────────────────\n\n  /**\n   * Remove deployed assets tracked by the lock file and report unmanaged ones.\n   *\n   * With `opts.all`, also deletes `.skaile/history.yaml`, `.skaile/patches/`,\n   * `.skaile/repos/`, and `skaile.lock.yaml` — effectively resetting the workspace\n   * to a pre-install state.\n   *\n   * @param opts - Optional cleanup options.\n   * @param opts.all - When `true`, remove all Skaile-managed state in addition to deployed assets.\n   * @returns Object with `removed` (successfully cleaned refs), `skipped` (with reasons),\n   *   and `unmanaged` (deployed assets not in the lock file).\n   */\n  clean(opts?: { all?: boolean }): {\n    removed: string[];\n    skipped: Array<{ ref: string; reason: string }>;\n    unmanaged: string[];\n  } {\n    const lock = this.tryReadLock();\n    const skipped: Array<{ ref: string; reason: string }> = [];\n\n    const removed = this.cleanLockedDeployedAssets(lock);\n    const unmanaged = this.collectUnmanagedAssets(lock);\n\n    if (opts?.all) this.removeAllManagedState();\n\n    return { removed, skipped, unmanaged };\n  }\n\n  /**\n   * Remove the deployed dir of every asset tracked by the lock; missing dirs\n   * still count as removed. Returns the list of cleaned refs.\n   */\n  private cleanLockedDeployedAssets(lock: LockFile | null): string[] {\n    const removed: string[] = [];\n    if (!lock) return removed;\n    for (const ref of Object.keys(lock.assets)) {\n      const { kind, name } = parseCanonicalLockKey(ref);\n      if (!kind || !name) continue;\n      const dest = deployedDir(\n        kind as AiComponent,\n        name,\n        this.driverTarget,\n        this.global,\n        this.projectDir,\n      );\n\n      try {\n        const stat = lstatSync(dest);\n        if (stat.isSymbolicLink()) unlinkSync(dest);\n        else rmSync(dest, { recursive: true, force: true });\n        removed.push(ref);\n      } catch {\n        // Already gone — count as removed\n        removed.push(ref);\n      }\n    }\n    return removed;\n  }\n\n  /**\n   * Report deployed assets not tracked by the lock file. Deployed assets are\n   * keyed by <kind>:<name>; lock canonical refs are mapped to that shape.\n   */\n  private collectUnmanagedAssets(lock: LockFile | null): string[] {\n    const lockRefs = lock\n      ? new Set(\n          Object.keys(lock.assets).map((r) => {\n            const p = parseCanonicalLockKey(r);\n            return p.kind && p.name ? `${p.kind}:${p.name}` : r;\n          }),\n        )\n      : new Set<string>();\n    const unmanaged: string[] = [];\n    const allDeployed = this.listDeployed();\n    for (const d of allDeployed) {\n      const ref = `${d.kind}:${d.name}`;\n      if (!lockRefs.has(ref)) {\n        unmanaged.push(ref);\n      }\n    }\n    return unmanaged;\n  }\n\n  /** Delete all Skaile-managed state: history file, patches/, repos/, lock. */\n  private removeAllManagedState(): void {\n    // Delete history file\n    const historyFile = join(this.projectDir, \".skaile\", \"history.yaml\");\n    try {\n      unlinkSync(historyFile);\n    } catch {}\n\n    // Remove patches dir\n    try {\n      rmSync(this.patchDir, { recursive: true, force: true });\n    } catch {}\n\n    // Remove repos dir\n    try {\n      rmSync(this.reposDir, { recursive: true, force: true });\n    } catch {}\n\n    // Remove lock file\n    try {\n      unlinkSync(this.lockPath);\n    } catch {}\n  }\n\n  // ── Helpers ────────────────────────────────────────────────────────────\n\n  /** Add a dependency ref to skaile.yaml if not already present. */\n  private addDependencyToConfig(ref: string): void {\n    if (this.global) return; // global installs don't modify skaile.yaml\n    const configPath = join(this.projectDir, \"skaile.yaml\");\n    if (!existsSync(configPath)) return;\n    const raw = parseYaml(readFileSync(configPath, \"utf8\")) ?? {};\n    if (!raw.dependencies) raw.dependencies = [];\n    if (!raw.dependencies.includes(ref)) {\n      raw.dependencies.push(ref);\n      writeFileSync(configPath, stringifyYaml(raw, { lineWidth: 120 }));\n    }\n  }\n\n  /** Remove a dependency ref from skaile.yaml. */\n  private removeDependencyFromConfig(ref: string): void {\n    if (this.global) return;\n    const configPath = join(this.projectDir, \"skaile.yaml\");\n    if (!existsSync(configPath)) return;\n    const raw = parseYaml(readFileSync(configPath, \"utf8\")) ?? {};\n    if (!raw.dependencies) return;\n    const idx = raw.dependencies.indexOf(ref);\n    if (idx !== -1) {\n      raw.dependencies.splice(idx, 1);\n      writeFileSync(configPath, stringifyYaml(raw, { lineWidth: 120 }));\n    }\n  }\n\n  private resolveRepoDir(decl: SourceDeclaration, name: string): string | null {\n    // Check links first\n    const links = readLinks(this.projectDir);\n    if (links[name]) {\n      return existsSync(links[name]) ? links[name] : null;\n    }\n\n    if (decl.path) {\n      const resolved = resolve(this.projectDir, decl.path);\n      return existsSync(resolved) ? resolved : null;\n    }\n\n    // Check project-local symlink, then global cache\n    const dest = join(this.reposDir, name);\n    if (existsSync(dest)) return dest;\n\n    const globalDest = join(getGlobalCacheDir(), name);\n    if (existsSync(join(globalDest, \".git\"))) return globalDest;\n\n    return null;\n  }\n}\n\n// ── Agent install (renders GitAgent packages to framework-native files) ──\n\nexport { installAgent } from \"./install-agent.js\";\n\n// ── Renderers ─────────────────────────────────────────────────────────────\n\nexport type { AgentRenderer, AgentRenderInput, AgentRenderResult } from \"./renderers.js\";\nexport {\n  AGENT_RENDERERS,\n  claudeCodeRenderer,\n  codexRenderer,\n  driverTargetSupportsAgents,\n  ompRenderer,\n} from \"./renderers.js\";\n\n// ── Fragments ─────────────────────────────────────────────────────────────\n\nexport type {\n  AbilityRef,\n  ConnectorRef,\n  ContractRef,\n  FragmentContext,\n  FragmentId,\n} from \"./fragments.js\";\nexport { BUILT_IN_FRAGMENTS, loadPromptExtensions, resolveFragments } from \"./fragments.js\";\n"]}

package/dist/{chunk-LFDZYCEO.js → chunk-BM7XANVN.js}

@@ -157,5 +157,5 @@ function repositoryToRaw(r) {
 }
 
 export { ASSET_KINDS, ASSET_NAME_HINT, INDIVIDUAL_KINDS, assetRefToDep, assetRefToStr, depToStr, entryFromRaw, entryToRaw, isValidAssetName, parseAssetRef, parseDep, repositoryFromRaw, repositoryToRaw };
-//# sourceMappingURL=chunk-LFDZYCEO.js.map
-//# sourceMappingURL=chunk-LFDZYCEO.js.map
+//# sourceMappingURL=chunk-BM7XANVN.js.map
+//# sourceMappingURL=chunk-BM7XANVN.js.map

package/dist/chunk-BM7XANVN.js.map

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Display-only — groups assets under their publisher\n   * in the manage TUI; never part of identity or the install layout.\n   */\n  domainSlug?: string;\n  /** Semantic version string (may be empty if not declared in the manifest). */\n  version: string;\n  /** Skills, agents, or other assets this entry depends on. */\n  requires: Dependency[];\n  /** Bundle dependencies — asset refs to install (bundles only). */\n  dependencies: string[];\n  /**\n   * Kind-specific metadata extracted from the manifest frontmatter.\n   * Used by MCP servers to carry default config (transport, command, args, env, url, headers)\n   * so that `mcp:name` dependency refs resolve to a runnable declaration without\n   * requiring verbose inline config in `skaile.yaml`.\n   */\n  metadata?: Record<string, unknown>;\n  /** Curated facet, surfaced as a badge in the manage TUI (not a tree axis). */\n  category?: string;\n  /** Store-listing keywords (manifest `assets[].keywords`, else frontmatter). */\n  keywords?: string[];\n  /** Store-listing license (manifest `assets[].license`, else repo-level default). */\n  license?: string;\n  /** Store-listing homepage (manifest `assets[].homepage`, else repo-level default). */\n  homepage?: string;\n}\n\n/**\n * How the members of a domain relate — drives display affordances only, never\n * install behaviour. Single canonical spelling shared with the store\n * (`DomainRelation` enum) and forge contract.\n */\nexport type DomainRelation = \"additions\" | \"alternatives\" | \"sequence\";\n\n/**\n * Display-only metadata for a navigational domain (from a sidecar `DOMAIN.md`,\n * surfaced by the store's `catalog.listDomains`). Keyed by {@link CatalogEntry.domainSlug}.\n * A domain groups assets under their publisher for co-discovery; it is never\n * part of asset identity and never bulk-installs.\n */\nexport interface CatalogDomain {\n  /** Stable slug — the join key to {@link CatalogEntry.domainSlug}. */\n  slug: string;\n  /** Human-readable title (may change without breaking the slug join). */\n  title: string;\n  /** Free-text description from the `DOMAIN.md` body. */\n  description?: string;\n  /** How members relate — drives sort + per-asset glyph, not installs. */\n  relation?: DomainRelation;\n  /** Display order among a publisher's domains (ascending). */\n  order?: number;\n  /** `kind:name` ref of the recommended member (alternatives domains). */\n  recommendedRef?: string;\n  /** Sidecar provenance — `\"<org>/<repo>\"` the `DOMAIN.md` was authored in. */\n  sidecarSource?: string;\n}\n\n/**\n * Construct a CatalogEntry from a raw deserialized record (e.g. from catalog.yaml).\n *\n * @param d - Raw object with loosely typed fields\n * @returns Normalized CatalogEntry\n * @docLink packages/core/concepts#entry-from-raw\n */\nexport function entryFromRaw(d: Record<string, unknown>): CatalogEntry {\n  const rawDeps = d.dependencies;\n  const deps = Array.isArray(rawDeps) ? (rawDeps as string[]).filter(Boolean) : [];\n  const entry: CatalogEntry = {\n    name: String(d.name ?? \"\"),\n    kind: String(d.kind ?? \"skill\") as AssetKind,\n    description: String(d.description ?? \"\"),\n    source: String(d.source ?? \"\"),\n    publisher: d.publisher != null ? String(d.publisher) : undefined,\n    // Read `repo`, falling back to the legacy `domain` key so a stale\n    // catalog.yaml cache written before this release still groups sanely.\n    // The cache self-heals on next write (entryToRaw stops writing `domain`).\n    repo: d.repo != null ? String(d.repo) : d.domain != null ? String(d.domain) : undefined,\n    domainSlug: d.domainSlug != null ? String(d.domainSlug) : undefined,\n    version: String(d.version ?? \"\"),\n    requires: Array.isArray(d.requires)\n      ? (d.requires as string[]).filter(Boolean).map(parseDep)\n      : [],\n    dependencies: deps,\n  };\n  if (d.metadata != null && typeof d.metadata === \"object\" && !Array.isArray(d.metadata)) {\n    entry.metadata = d.metadata as Record<string, unknown>;\n  }\n  if (d.category != null) entry.category = String(d.category);\n  if (Array.isArray(d.keywords)) {\n    entry.keywords = (d.keywords as unknown[]).filter((k): k is string => typeof k === \"string\");\n  }\n  if (d.license != null) entry.license = String(d.license);\n  if (d.homepage != null) entry.homepage = String(d.homepage);\n  return entry;\n}\n\n/**\n * Serialize a CatalogEntry to a plain record suitable for YAML/JSON persistence.\n *\n * @param e - CatalogEntry to serialize\n * @returns Plain object with string-serialized requires and dependencies\n * @docLink packages/core/concepts#entry-to-raw\n */\nexport function entryToRaw(e: CatalogEntry): Record<string, unknown> {\n  const raw: Record<string, unknown> = {\n    name: e.name,\n    kind: e.kind,\n    description: e.description,\n    source: e.source,\n    publisher: e.publisher,\n    repo: e.repo,\n    version: e.version,\n    ...(e.domainSlug != null ? { domainSlug: e.domainSlug } : {}),\n    requires: e.requires.map(depToStr),\n    dependencies: e.dependencies,\n  };\n  if (e.metadata) raw.metadata = e.metadata;\n  if (e.category != null) raw.category = e.category;\n  if (e.keywords && e.keywords.length > 0) raw.keywords = e.keywords;\n  if (e.license != null) raw.license = e.license;\n  if (e.homepage != null) raw.homepage = e.homepage;\n  return raw;\n}\n\n// ── AssetRef ─────────────────────────────────────────────────────────────────\n\n/**\n * A parsed asset reference: `kind:@<publisher>/name[#pin]`.\n *\n * `publisher` is the canonical, GitHub-shaped publisher namespace (≤39 chars,\n * alphanumeric+hyphen). `pin` is a SemVer constraint, exact SHA, or absent.\n * Floating refs (`main`, `latest`, `HEAD`) are rejected at parse time.\n *\n * Produced by `parseAssetRef`; consumed by `resolveAsset` and `resolveAll`.\n * @docLink packages/core/concepts#asset-ref\n */\nexport interface AssetRef {\n  kind: string;\n  name: string;\n  /** Canonical publisher namespace. Optional only for ambiguity-resolution\n   *  during migration; new manifests require it. */\n  publisher?: string;\n  /** SemVer constraint (^1.4.0, ~1.4, 1.x, exact 1.4.0), 40-char SHA, or undefined. */\n  pin?: string;\n}\n\nconst SHA_RE = /^[0-9a-f]{40}$/i;\n\n// Scoped grammar: `kind:@publisher/name[#version]`. The publisher sub-pattern is\n// GitHub-shaped (1-39 chars, alphanumeric + single hyphens, no leading/trailing or\n// double hyphen); `@` is the scope sigil and `#` the version sigil. `name` is\n// intentionally permissive (`[^/#\\s]+` — only the structural separators are\n// forbidden); floating-ref rejection stays in `isValidPin`, so `#main`/`#latest`\n// match here and fail there with a clear message.\nconst SCOPED_REF_RE =\n  /^(?:([a-z][a-z0-9-]*):)?@([A-Za-z0-9](?:[A-Za-z0-9]|-(?!-)){0,37}[A-Za-z0-9]|[A-Za-z0-9])\\/([^/#\\s]+)(?:#(.+))?$/;\n\n// Canonical asset-name grammar: lowercase kebab-case (npm-style, scope-free) —\n// `a-z` / `0-9` segments joined by single hyphens, no leading/trailing hyphen,\n// no uppercase, spaces, dots, or underscores. Names become directory names,\n// lock keys, and CLI args, so the constraint is intentionally narrow.\nconst ASSET_NAME_RE = /^[a-z0-9]+(?:-[a-z0-9]+)*$/;\n\n// Diagnostic-only matcher: a ref carrying a `kind:@publisher/` scope prefix,\n// capturing whatever follows (sans `#pin`) as the candidate name. Used solely\n// to tell \"missing publisher\" apart from \"malformed name\" when the strict\n// grammar above fails (e.g. a space in the name).\nconst SCOPE_PREFIX_RE = /^(?:[a-z][a-z0-9-]*:)?@[^/\\s]+\\/([^#]+?)(?:#.*)?$/;\n\n/** Human-readable statement of the canonical asset-name rule. */\nexport const ASSET_NAME_HINT =\n  'names must be lowercase kebab-case (a-z, 0-9, single hyphens; e.g. \"cli-concept\")';\n\n/**\n * True when `name` is a canonical asset name: lowercase kebab-case, scope-free.\n *\n * This is the single source of truth for asset-name validity — `parseAssetRef`\n * enforces it, and `skaile validate` reports violations across a repo tree.\n * @docLink packages/core/concepts#is-valid-asset-name\n */\nexport function isValidAssetName(name: string): boolean {\n  return ASSET_NAME_RE.test(name);\n}\n\n/** True when `pin` is a SemVer constraint, exact SemVer, or 40-char SHA. */\nfunction isValidPin(pin: string): boolean {\n  if (SHA_RE.test(pin)) return true;\n  if (semver.valid(pin)) return true;\n  if (semver.validRange(pin)) return true;\n  return false;\n}\n\n/** Throw the canonical non-canonical-pin error for a ref `s` carrying `pin`. */\nfunction rejectFloatingPin(s: string, pin: string): never {\n  throw new Error(\n    `non-canonical pin \"${pin}\" in \"${s}\" — pin must be a SemVer ` +\n      \"constraint (1.4.0, ^1.4, ~1.4, 1.x), a 40-char SHA, or absent. \" +\n      \"Floating refs (main/latest/HEAD) are not allowed.\",\n  );\n}\n\n/** Throw the canonical malformed-name error for a ref `s` carrying `name`. */\nfunction rejectInvalidName(s: string, name: string): never {\n  throw new Error(\n    `invalid asset name \"${name}\" in ref \"${s}\" — ${ASSET_NAME_HINT}. ` +\n      \"Run the `migrate-skaile-manifest` skill on legacy manifests.\",\n  );\n}\n\n/**\n * Parse a canonical asset reference string into an `AssetRef` object.\n *\n * Grammar: `kind:@<publisher>/name[#version]`\n *   \"skill:@skaile-ai/audit\"          → { kind: \"skill\", name: \"audit\", publisher: \"skaile-ai\" }\n *   \"skill:@skaile-ai/audit#^1.4.0\"   → { …, pin: \"^1.4.0\" }\n *   \"skill:@skaile-ai/audit#<40-sha>\" → { …, pin: \"<40-sha>\" }\n *\n * `@` is the scope sigil and `#` the version sigil. `<publisher>` is GitHub-shaped\n * (≤39 chars, alphanumeric+hyphen, no leading/trailing or double hyphen). `pin`\n * accepts a SemVer constraint (`^`, `~`, `x`, exact), a 40-char SHA, or is absent.\n * Floating refs (`main`/`latest`/`HEAD`/anything non-canonical) are parse-time errors.\n *\n * The shorthand `mcp:` is normalized to `mcp-server:`. `kind` defaults to `\"skill\"`.\n *\n * @param s - Asset reference string\n * @returns Parsed `AssetRef`\n * @throws When the ref matches no grammar, the publisher is malformed, or the pin\n *   is a floating ref.\n * @docLink packages/core/concepts#parse-asset-ref\n */\nexport function parseAssetRef(s: string): AssetRef {\n  const trimmed = s.trim();\n  const m = SCOPED_REF_RE.exec(trimmed);\n  if (m) {\n    const kindRaw = m[1] ?? \"skill\";\n    const kind = kindRaw === \"mcp\" ? \"mcp-server\" : kindRaw;\n    const publisher = m[2];\n    const name = m[3];\n    const pin = m[4]?.trim() || undefined;\n    if (!isValidAssetName(name)) rejectInvalidName(s, name);\n    if (pin !== undefined && !isValidPin(pin)) rejectFloatingPin(s, pin);\n    return { kind, name, publisher, pin };\n  }\n\n  // The strict grammar failed. If the ref nonetheless carries a `@publisher/`\n  // scope and the fault is the name (e.g. an embedded space), surface a\n  // name-specific error rather than the misleading \"publisher required\" — the\n  // publisher is plainly present. A *valid* captured name means the publisher\n  // itself is malformed, so fall through to the publisher error below.\n  const scoped = SCOPE_PREFIX_RE.exec(trimmed);\n  if (scoped) {\n    const candidate = scoped[1].trim();\n    if (!isValidAssetName(candidate)) rejectInvalidName(s, candidate);\n  }\n\n  throw new Error(\n    `publisher required in asset ref \"${s}\" — use \\`kind:@<publisher>/name\\`. ` +\n      \"Run the `migrate-skaile-manifest` skill on legacy manifests.\",\n  );\n}\n\n/**\n * Serialize an AssetRef back to its canonical string form.\n *\n * Emits the scope form `kind:@publisher/name[#pin]` when `publisher` is present,\n * and the bare `kind:name[#pin]` form for transitive refs that inherit it.\n *\n * @param ref - AssetRef to serialize\n * @returns String in `\"kind:@publisher/name[#pin]\"` (or bare `\"kind:name[#pin]\"`) format\n * @docLink packages/core/concepts#asset-ref-to-str\n */\nexport function assetRefToStr(ref: AssetRef): string {\n  const scope = ref.publisher ? `@${ref.publisher}/${ref.name}` : ref.name;\n  return `${ref.kind}:${scope}${ref.pin ? `#${ref.pin}` : \"\"}`;\n}\n\n/**\n * Convert an AssetRef to a simple Dependency, dropping the repository and pin qualifiers.\n *\n * @param ref - Full asset reference (may include repository and pin)\n * @returns Dependency with only kind and name\n * @docLink packages/core/concepts#asset-ref-to-dep\n */\nexport function assetRefToDep(ref: AssetRef): Dependency {\n  // Grammar-agnostic — drops publisher/pin, so the scope-sigil change doesn't touch it.\n  return { kind: ref.kind, name: ref.name };\n}\n\n// ── Lock File ────────────────────────────────────────────────────────────────\n\n/** A path/sha256 pair recorded for one file inside a locked asset. */\nexport interface LockFileEntry {\n  path: string;\n  sha256: string;\n}\n\n/**\n * Per-asset entry in the lock file (v3 schema).\n * Keyed in `LockFile.assets` by canonical ref (`<kind>:@<publisher>/<name>#<version>`).\n * @docLink packages/core/api-reference#lock-entry\n */\nexport interface LockEntry {\n  /** Composite sha256 over sorted `<path>:<sha256>\\n` rows. */\n  sha256: string;\n  /** Resolved upstream source + commit. */\n  source: { url: string; commit: string };\n  /** Files that constitute the asset. */\n  files: LockFileEntry[];\n  /** True when an `overrides[]` entry pinned this resolution. */\n  override_applied: boolean;\n}\n\n/** Per-source-URL entry in `LockFile.sources`. */\nexport interface LockSourceEntry {\n  url: string;\n  commit: string;\n}\n\n/**\n * Full skaile.lock.yaml structure (v3 schema).\n * @docLink packages/core/api-reference#lock-file\n */\nexport interface LockFile {\n  /** Lock file schema version. v3 is canonical. */\n  schema_version: 3;\n  /** ISO timestamp of when the lock was generated. */\n  locked_at: string;\n  /** Resolved assets keyed by canonical ref `<kind>:@<publisher>/<name>#<version>`. */\n  assets: Record<string, LockEntry>;\n  /** Every source URL that contributed at least one resolved asset. */\n  sources: LockSourceEntry[];\n  /**\n   * Resolved plugin packages (from `skaile.yaml` `plugins:`), keyed by package\n   * name. The plugin-store reconciler reads this slice into its reconcile-hash\n   * so a lock change reinstalls even when the manifest list is unchanged.\n   */\n  plugins?: Record<string, LockPluginEntry>;\n}\n\n/** One pinned plugin package in the lock file's `plugins` slice. */\nexport interface LockPluginEntry {\n  /** Resolved exact version (e.g. \"0.1.3\"). */\n  version: string;\n  /** Package integrity hash (e.g. \"sha512-...\"); may be empty until populated from bun's output. */\n  integrity: string;\n}\n\n// ── AgentManifest ────────────────────────────────────────────────────────────\n\n/**\n * Agent package manifest — parsed from `agent.yaml` in an agent directory.\n * Defines the agent's identity, model preferences, capability requirements, and composition mixins.\n * @docLink packages/core/concepts#agent-manifest\n */\nexport interface AgentManifest {\n  spec_version?: string;\n  name?: string;\n  version?: string;\n  description?: string;\n  model?: {\n    preferred?: string;\n    fallback?: string[];\n    constraints?: { temperature?: number; max_tokens?: number };\n  };\n  tools?: {\n    allowed?: string[];\n    denied?: string[];\n  };\n  delegation?: { mode?: string };\n  requires?: Array<{ name: string; source: string; version?: string; mount: string }>;\n  tags?: string[];\n  author?: string;\n  metadata?: Record<string, unknown>;\n  /**\n   * @deprecated Use `persona`, `rules`, and `knowledge` mixin arrays instead.\n   * This field is declared but was never resolved at runtime.\n   */\n  extends?: string;\n  abilities?: string[];\n  /**\n   * Identity fragments to compose into the agent persona.\n   * Each entry is a catalog ref (`persona:name@repo#pin`), a bare name\n   * (defaults to kind \"persona\"), or a local path (`./my.persona.md`).\n   * Resolved in order — concatenated with \\n\\n---\\n\\n separator.\n   */\n  persona?: string[];\n  /**\n   * Behavioral rule sets to compose into the agent's constraints.\n   * Each entry is a catalog ref (`ruleset:name@repo#pin`), bare name,\n   * or local path. All rules apply (union).\n   */\n  rules?: string[];\n  /**\n   * Knowledge bundles to compose into the agent's domain knowledge.\n   * Each entry is a catalog ref (`knowledge:name@repo#pin`), bare name,\n   * or local path to a knowledge directory. Loaded in declaration order.\n   */\n  knowledge?: string[];\n  contracts?: string[];\n  /**\n   * v2 composition items. Each entry references an asset (skill, connector,\n   * soul, ruleset, etc.) with binding semantics (discoverable, inline-live,\n   * inline-snapshot). Resolved at session start via the composition module.\n   */\n  composes?: Array<{\n    kind: string;\n    ref: string;\n    instance?: string;\n    binding?: \"discoverable\" | \"inline-live\" | \"inline-snapshot\";\n  }>;\n  runtime?: {\n    max_turns?: number;\n    timeout?: number;\n    [key: string]: unknown;\n  };\n}\n\n// ── Repository ───────────────────────────────────────────────────────────────\n\ntype RepositoryKind = \"local\" | \"github\";\n\n/**\n * A registered asset repository (local path or cloned GitHub repo).\n * Stored in the catalog; consumed by `repo-manager` for cloning and scanning.\n * @docLink packages/core/concepts#repository\n */\nexport interface Repository {\n  /** Logical repository name. */\n  name: string;\n  /** Storage kind: \"local\" for paths, \"github\" for remote URLs. */\n  kind: RepositoryKind;\n  /** Absolute path (local) or remote URL (github). */\n  path: string;\n  /** Active branch. */\n  branch: string;\n  /** Upstream fork URL (for fork-based workflows). */\n  upstream?: string;\n}\n\n/**\n * Construct a `Repository` from a raw deserialized record.\n *\n * @param d - Raw object from YAML/JSON\n * @returns Normalized `Repository`\n * @docLink packages/core/concepts#repository-from-raw\n */\nexport function repositoryFromRaw(d: Record<string, unknown>): Repository {\n  return {\n    name: String(d.name ?? \"\"),\n    kind: String(d.kind ?? \"local\") as RepositoryKind,\n    path: String(d.path ?? \"\"),\n    branch: String(d.branch ?? \"main\"),\n    upstream: d.upstream != null ? String(d.upstream) : undefined,\n  };\n}\n\n/**\n * Serialize a `Repository` to a plain record for YAML/JSON persistence.\n * Omits the `branch` field when it equals `\"main\"` to keep serialized output clean.\n *\n * @param r - Repository to serialize\n * @returns Plain object suitable for YAML/JSON\n * @docLink packages/core/concepts#repository-to-raw\n */\nexport function repositoryToRaw(r: Repository): Record<string, unknown> {\n  const d: Record<string, unknown> = {\n    name: r.name,\n    kind: r.kind,\n    path: r.path,\n  };\n  if (r.branch !== \"main\") d.branch = r.branch;\n  if (r.upstream != null) d.upstream = r.upstream;\n  return d;\n}\n"]}

package/dist/{chunk-W6TLIJG3.js → chunk-EOCKR5TN.js}

@@ -1,4 +1,4 @@
-import { factoryAssetRoots } from './chunk-2VM62DX7.js';
+import { factoryAssetRoots } from './chunk-5DPQ766L.js';
 import fs from 'fs';
 import os from 'os';
 import path from 'path';
@@ -24,5 +24,5 @@ function aiResourceRoots() {
 }
 
 export { AI_RESOURCES, MONOREPO_ROOT, aiResourceRoots };
-//# sourceMappingURL=chunk-W6TLIJG3.js.map
-//# sourceMappingURL=chunk-W6TLIJG3.js.map
+//# sourceMappingURL=chunk-EOCKR5TN.js.map
+//# sourceMappingURL=chunk-EOCKR5TN.js.map

package/dist/{chunk-W6TLIJG3.js.map → chunk-EOCKR5TN.js.map}

@@ -1 +1 @@
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package/dist/{chunk-FM2BJYX4.js → chunk-I3TERDTR.js}

@@ -68,5 +68,5 @@ async function flowFindFlowForSession(projectDir, runId) {
 }
 
 export { flowFindFlowForSession, flowGetSession, flowList, flowListSessions, flowShow };
-//# sourceMappingURL=chunk-FM2BJYX4.js.map
-//# sourceMappingURL=chunk-FM2BJYX4.js.map
+//# sourceMappingURL=chunk-I3TERDTR.js.map
+//# sourceMappingURL=chunk-I3TERDTR.js.map