@skaile/workspaces 0.10.0 → 0.11.0

package/dist/bridge/src/drivers/claude-sdk.d.ts.map

@@ -1 +1 @@
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package/dist/{chunk-YWQ3NGCS.js → chunk-BTKNSMLK.js}

@@ -303,5 +303,5 @@ function resolveProjectDir(additionalEnvVars) {
 }
 
 export { PluginStore, WorkspacePlugin, buildClaudePluginFiles, resolveProjectDir };
-//# sourceMappingURL=chunk-YWQ3NGCS.js.map
-//# sourceMappingURL=chunk-YWQ3NGCS.js.map
+//# sourceMappingURL=chunk-BTKNSMLK.js.map
+//# sourceMappingURL=chunk-BTKNSMLK.js.map

package/dist/{chunk-YWQ3NGCS.js.map → chunk-BTKNSMLK.js.map}

@@ -1 +1 @@
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── Claude Code plugin-directory generator (STATELESS) ──────────────────────\n// Generates the contents of a Claude Code plugin directory\n// (`.claude/plugins/skaile/`) as an in-memory file map. No plugin instance or\n// boot() is required — safe to call from install commands.\n//\n// The previous standalone `@skaile/workspace-plugin-claude` package shipped\n// these as static files plus loose `.mjs` hook scripts; they are now\n// CLI-owned templates. Hooks invoke the `skaile` binary directly\n// (`skaile plugin hook <event>`) and MCP runs via `skaile mcp-server` — no\n// generated script files, no shebang, no runtime assumption.\n\n/**\n * The Claude Code plugin manifest. `name` is `skaile`; `hooks` and\n * `mcpServers` point at sibling files in the generated directory.\n */\nconst PLUGIN_JSON = {\n  name: \"skaile\",\n  version: \"0.1.0\",\n  description: \"Skaile workspace — connectors, mounts, skills, flows, shared state\",\n  author: { name: \"skaile-ai\", url: \"https://github.com/skaile-ai\" },\n  repository: \"https://github.com/skaile-ai/workspaces\",\n  keywords: [\"skaile\", \"connectors\", \"workspace\", \"ai-assets\"],\n  hooks: \"./hooks/hooks.json\",\n  mcpServers: \"./.mcp.json\",\n  userConfig: {\n    skaile_yaml_path: {\n      type: \"string\",\n      title: \"skaile.yaml path\",\n      description: \"Override path to skaile.yaml (default: auto-detect from project root)\",\n    },\n  },\n};\n\n/**\n * Hook wiring. Each lifecycle event invokes the `skaile` binary directly —\n * no loose `.mjs` scripts. `skaile plugin hook <event>` resolves the project\n * directory itself (`CLAUDE_PROJECT_DIR` / cwd) and always exits 0.\n */\nconst HOOKS_JSON = {\n  hooks: {\n    SessionStart: [{ hooks: [{ type: \"command\", command: \"skaile plugin hook session-start\" }] }],\n    SessionEnd: [{ hooks: [{ type: \"command\", command: \"skaile plugin hook session-end\" }] }],\n    UserPromptSubmit: [\n      { hooks: [{ type: \"command\", command: \"skaile plugin hook user-prompt-submit\" }] },\n    ],\n  },\n};\n\n/**\n * MCP server wiring. Spawns `skaile mcp-server` — a stdio MCP subprocess that\n * runs on plain Node (no Claude Agent SDK).\n */\nconst MCP_JSON = {\n  mcpServers: {\n    \"skaile-workspace\": {\n      command: \"skaile\",\n      args: [\"mcp-server\"],\n      env: {},\n    },\n  },\n};\n\n/**\n * Build the Claude Code plugin directory as an in-memory file map.\n *\n * Returns `{ relativePath: contents }` for every file the installer must\n * write under `<projectDir>/.claude/plugins/skaile/`. The installer is also\n * responsible for populating `skills/` from the project's `.skaile/skills/`.\n *\n * Stateless — no plugin instance, no `boot()`. The generated artifacts carry\n * no project-specific paths: hooks and the MCP server resolve the project\n * directory themselves at runtime.\n *\n * @returns A map of plugin-relative file paths to their string contents.\n *\n * @docLink packages/workspace-plugin/concepts#adapters\n */\nexport function buildClaudePluginFiles(): Record<string, string> {\n  return {\n    \".claude-plugin/plugin.json\": `${JSON.stringify(PLUGIN_JSON, null, 2)}\\n`,\n    \"hooks/hooks.json\": `${JSON.stringify(HOOKS_JSON, null, 2)}\\n`,\n    \".mcp.json\": `${JSON.stringify(MCP_JSON, null, 2)}\\n`,\n    \"skills/.gitkeep\": \"\",\n  };\n}\n","import { readFile, writeFile, mkdir } from \"node:fs/promises\";\nimport { dirname } from \"node:path\";\n\ninterface Subscriber {\n  regex: RegExp;\n  handler: (key: string, value: unknown) => void;\n}\n\n/**\n * Disk-backed reactive key-value store for plugin state.\n *\n * Keeps an in-memory map that can be flushed to / loaded from a JSON file.\n * Supports glob-style subscriptions (`connector:*`, `*`).\n *\n * State is persisted to `<projectDir>/.skaile/plugin-state.json`.\n * The instance is available on {@link WorkspacePlugin} as the public `store`\n * field after `boot()` resolves.\n *\n * @docLink packages/workspace-plugin/concepts#plugin-store\n */\nexport class PluginStore {\n  private readonly statePath: string;\n  private data: Map<string, unknown> = new Map();\n  private subscribers: Subscriber[] = [];\n\n  constructor(statePath: string) {\n    this.statePath = statePath;\n  }\n\n  /** Synchronous read from in-memory map. */\n  get<T>(key: string): T | undefined {\n    return this.data.get(key) as T | undefined;\n  }\n\n  /** Write to in-memory map and notify matching subscribers. */\n  set<T>(key: string, value: T): void {\n    this.data.set(key, value);\n    this.notify(key, value);\n  }\n\n  /** Remove key and notify matching subscribers. */\n  delete(key: string): void {\n    this.data.delete(key);\n    this.notify(key, undefined);\n  }\n\n  /**\n   * Subscribe to changes matching a glob-style pattern.\n   * `*` matches any sequence of characters.\n   * Returns an unsubscribe function.\n   */\n  subscribe(pattern: string, handler: (key: string, value: unknown) => void): () => void {\n    const escaped = pattern.replace(/[.+?^${}()|[\\]\\\\]/g, \"\\\\$&\");\n    const regexStr = `^${escaped.replace(/\\*/g, \".*\")}$`;\n    const sub: Subscriber = { regex: new RegExp(regexStr), handler };\n    this.subscribers.push(sub);\n\n    return () => {\n      const idx = this.subscribers.indexOf(sub);\n      if (idx !== -1) this.subscribers.splice(idx, 1);\n    };\n  }\n\n  /** Rehydrate from disk JSON. Missing file = empty store (no throw). */\n  async load(): Promise<void> {\n    try {\n      const raw = await readFile(this.statePath, \"utf-8\");\n      const parsed = JSON.parse(raw);\n      if (parsed && typeof parsed === \"object\" && !Array.isArray(parsed)) {\n        this.data = new Map(Object.entries(parsed));\n      }\n    } catch (e: unknown) {\n      // Missing file or invalid JSON — start with empty store\n    }\n  }\n\n  /** Write entire store to disk as JSON. Creates parent dirs if needed. */\n  async flush(): Promise<void> {\n    const obj = Object.fromEntries(this.data);\n    const json = JSON.stringify(obj, null, 2);\n    await mkdir(dirname(this.statePath), { recursive: true });\n    await writeFile(this.statePath, json, \"utf-8\");\n  }\n\n  private notify(key: string, value: unknown): void {\n    for (const sub of this.subscribers) {\n      if (sub.regex.test(key)) {\n        sub.handler(key, value);\n      }\n    }\n  }\n}\n","import { readFileSync } from \"node:fs\";\nimport { join } from \"node:path\";\nimport type { ConnectorManager } from \"@skaile/workspaces/connectors\";\nimport { createLogger } from \"@skaile/workspaces/core/logging\";\nimport type { Logger } from \"@skaile/workspaces/types\";\nimport { PluginStore } from \"./store.js\";\n\n/**\n * Construction options for {@link WorkspacePlugin}.\n *\n * At minimum `projectDir` must be supplied.  All other fields are optional\n * and are pre-resolved by the caller when available (e.g. the runner already\n * knows `driver`/`provider`/`model` from its own settings resolution).\n *\n * @docLink packages/workspace-plugin/concepts#workspaceplugin-lifecycle\n */\nexport interface WorkspacePluginOpts {\n  projectDir: string;\n  /**\n   * Active connector manager. The unified `ConnectorManager` owns both\n   * filesystem-face (mountable) and tool-face connectors.\n   */\n  connectorManager?: ConnectorManager;\n  bootOwned?: boolean;\n  onLog?: (msg: string) => void;\n  /** Pre-resolved driver type (avoids needing boot() to read settings). */\n  driver?: string;\n  /** Pre-resolved provider. */\n  provider?: string;\n  /** Pre-resolved model. */\n  model?: string;\n}\n\n/**\n * Shared runtime core for the skaile workspace plugin.\n *\n * Manages the full lifecycle (`boot` → tools available → `shutdown`) and\n * surfaces workspace capabilities — mounts, connectors, flows, skills,\n * sessions, and config validation — through two adapter backends:\n *\n * - **MCP, in-process** (runner): call {@link buildWorkspaceMcpServer} for the\n *   Claude Agent SDK server the runner embeds into its `query()` call.\n * - **MCP, stdio** (`skaile mcp-server`): call {@link runMcpServerStdio} for a\n *   raw `@modelcontextprotocol/sdk` server — no Claude Agent SDK.\n * - **OMP**: call {@link buildOmpToolSet} for the 13-tool native subset and\n *   {@link buildOmpExtensionSource} for the generated extension file.\n *\n * Two boot modes are supported via {@link WorkspacePluginOpts.bootOwned}:\n * - `bootOwned: false` (default) — managers injected externally by the runner.\n * - `bootOwned: true` — plugin owns the full manager lifecycle (standalone MCP\n *   subprocess or OMP extension).\n *\n * @docLink packages/workspace-plugin/concepts#workspaceplugin-lifecycle\n */\nexport class WorkspacePlugin {\n  readonly projectDir: string;\n  connectorManager: ConnectorManager | null;\n  readonly store: PluginStore;\n\n  private readonly bootOwned: boolean;\n  private readonly onLog: (msg: string) => void;\n  private readonly log: Logger = createLogger({\n    kind: \"mcp\",\n    subkind: \"skaile-workspace\",\n  });\n  driver?: string;\n  provider?: string;\n  model?: string;\n\n  constructor(opts: WorkspacePluginOpts) {\n    this.projectDir = opts.projectDir;\n    this.connectorManager = opts.connectorManager ?? null;\n    this.store = new PluginStore(join(opts.projectDir, \".skaile\", \"plugin-state.json\"));\n    this.bootOwned = opts.bootOwned ?? false;\n    if (opts.driver) this.driver = opts.driver;\n    if (opts.provider) this.provider = opts.provider;\n    if (opts.model) this.model = opts.model;\n    this.onLog = opts.onLog ?? (() => {});\n    this.log.debug(\"plugin constructed\", {\n      driver: opts.driver,\n      hasConnectors: !!opts.connectorManager,\n      provider: opts.provider,\n      model: opts.model,\n      bootOwned: this.bootOwned,\n    });\n  }\n\n  async boot(): Promise<void> {\n    if (!this.bootOwned) {\n      // Managers were injected externally — resolve settings only (non-fatal)\n      try {\n        const { resolveSettings } = await import(\"@skaile/workspaces/core\");\n        const settings = await resolveSettings(this.projectDir);\n        this.driver = settings.driver ?? \"omp\";\n        this.provider = settings.provider;\n        this.model = settings.model;\n      } catch {\n        /* non-fatal */\n      }\n      await this.store.load();\n      return;\n    }\n\n    // bootOwned: we own the managers lifecycle\n    try {\n      const { resolveSettings } = await import(\"@skaile/workspaces/core\");\n      const settings = await resolveSettings(this.projectDir);\n      this.driver = settings.driver ?? \"omp\";\n      this.provider = settings.provider;\n      this.model = settings.model;\n    } catch {\n      /* non-fatal */\n    }\n\n    try {\n      const {\n        ConnectorManager,\n        loadConnectorDeclarations,\n        registerBuiltinConnectors,\n        createCliSecretProviderChain,\n      } = await import(\"@skaile/workspaces/connectors\");\n\n      registerBuiltinConnectors();\n\n      const secrets = createCliSecretProviderChain();\n\n      const connectorDecls = await loadConnectorDeclarations(this.projectDir);\n      const cm = new ConnectorManager(this.projectDir, { secrets });\n      await cm.connectAll(connectorDecls);\n      this.connectorManager = cm;\n\n      this.log.info(\"workspace plugin booted\", {\n        connectors: connectorDecls.length,\n      });\n      this.onLog(`WorkspacePlugin booted: ${connectorDecls.length} connectors`);\n    } catch (err) {\n      this.log.warn(\"workspace plugin boot warning\", {\n        error: err instanceof Error ? err.message : String(err),\n      });\n      this.onLog(`WorkspacePlugin boot warning: ${err}`);\n    }\n\n    await this.store.load();\n  }\n\n  async reload(): Promise<void> {\n    if (!this.bootOwned) return;\n    await this.shutdown();\n    await this.boot();\n  }\n\n  async shutdown(): Promise<void> {\n    this.log.info(\"workspace plugin shutdown\");\n    await this.store.flush();\n    if (!this.bootOwned) return;\n    try {\n      await (this.connectorManager as any)?.disconnectAll?.();\n    } catch {\n      /* best-effort */\n    }\n    this.connectorManager = null;\n  }\n\n  buildSystemPromptSection(driver?: string): string {\n    const d = driver ?? this.driver ?? \"unknown\";\n    // The unified ConnectorManager owns both mountable (filesystem-face) and\n    // tool-face connectors. Filesystem-face connectors expose a `mountPath`.\n    const all = (this.connectorManager as any)?.listConnectors?.() ?? [];\n    const mounts = (all as any[]).filter((c) => typeof c.mountPath === \"string\");\n    const connectors = (all as any[]).filter((c) => typeof c.mountPath !== \"string\");\n    const lines = [\"## Workspace (skaile)\", \"\", `Driver: ${d}`, `Project: ${this.projectDir}`];\n    if (mounts.length > 0) {\n      lines.push(\"\", \"Mounts:\");\n      for (const v of mounts) {\n        lines.push(`  · ${v.id} (${v.driver}) → ${v.mountPath ?? \"(unmounted)\"}`);\n      }\n    }\n    if (connectors.length > 0) {\n      lines.push(\"\", \"Connectors:\");\n      for (const c of connectors) {\n        lines.push(`  · ${c.id} (${c.driver})`);\n      }\n    }\n    lines.push(\"\", \"Use workspace_info for full details. Use workspace_validate to check health.\");\n\n    for (const name of [\"SOUL.md\", \"RULES.md\"]) {\n      const skaileOverride = join(this.projectDir, \".skaile\", name);\n      const rootFile = join(this.projectDir, name);\n      for (const candidate of [skaileOverride, rootFile]) {\n        try {\n          const content = readFileSync(candidate, \"utf-8\").trim();\n          if (content) {\n            lines.push(\"\", `## ${name.replace(\".md\", \"\")}`, \"\", content);\n            break;\n          }\n        } catch {\n          // file not found, try next\n        }\n      }\n    }\n\n    return lines.join(\"\\n\");\n  }\n\n  /**\n   * Build the in-process Claude Agent SDK MCP server (runner embedding).\n   * Returns `null` when `@anthropic-ai/claude-agent-sdk` is unavailable.\n   */\n  async buildWorkspaceMcpServer(): Promise<unknown | null> {\n    this.log.info(\"building workspace MCP server\");\n    try {\n      const { buildWorkspaceMcpServer } = await import(\"./adapters/mcp.js\");\n      const server = await buildWorkspaceMcpServer(this);\n      if (server) this.log.info(\"workspace MCP server ready\");\n      else this.log.debug(\"workspace MCP server skipped (no tools)\");\n      return server;\n    } catch (err) {\n      this.log.error(\"workspace MCP server build failed\", err);\n      throw err;\n    }\n  }\n\n  /**\n   * Build the raw `@modelcontextprotocol/sdk` stdio MCP server — no Claude\n   * Agent SDK. Used by the `skaile mcp-server` subprocess. The returned\n   * server is not yet connected to a transport.\n   */\n  async buildWorkspaceMcpStdioServer(): Promise<unknown> {\n    this.log.info(\"building workspace stdio MCP server\");\n    const { buildWorkspaceMcpStdioServer } = await import(\"./adapters/mcp.js\");\n    return buildWorkspaceMcpStdioServer(this);\n  }\n\n  /**\n   * Build and run the stdio MCP server: builds the raw\n   * `@modelcontextprotocol/sdk` server and connects a `StdioServerTransport`.\n   * Used by the `skaile mcp-server` subprocess.\n   */\n  async runMcpServerStdio(): Promise<void> {\n    this.log.info(\"starting workspace stdio MCP server\");\n    const { runMcpServerStdio } = await import(\"./adapters/mcp.js\");\n    await runMcpServerStdio(this);\n  }\n\n  async buildOmpToolSet(): Promise<unknown[]> {\n    const { buildOmpToolSet } = await import(\"./adapters/omp.js\");\n    return buildOmpToolSet(this);\n  }\n\n  async buildOmpExtensionSource(): Promise<string> {\n    const { buildOmpExtensionSource } = await import(\"./adapters/omp.js\");\n    return buildOmpExtensionSource(this.projectDir);\n  }\n\n  async handleSlashCommand(group: string, args: string[]): Promise<string> {\n    const { handleSlashCommand } = await import(\"./adapters/omp.js\");\n    return handleSlashCommand(this, group, args);\n  }\n}\n","// utils/project-dir.ts\n// Centralised project-directory resolution used by all plugin entry points.\n\n/**\n * Resolve the skaile project directory from environment variables.\n *\n * Resolution order:\n * 1. `SKAILE_PROJECT_DIR` (always checked first)\n * 2. 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── Claude Code plugin-directory generator (STATELESS) ──────────────────────\n// Generates the contents of a Claude Code plugin directory\n// (`.claude/plugins/skaile/`) as an in-memory file map. No plugin instance or\n// boot() is required — safe to call from install commands.\n//\n// The previous standalone `@skaile/workspace-plugin-claude` package shipped\n// these as static files plus loose `.mjs` hook scripts; they are now\n// CLI-owned templates. 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Each lifecycle event invokes the `skaile` binary directly —\n * no loose `.mjs` scripts. `skaile plugin hook <event>` resolves the project\n * directory itself (`CLAUDE_PROJECT_DIR` / cwd) and always exits 0.\n */\nconst HOOKS_JSON = {\n  hooks: {\n    SessionStart: [{ hooks: [{ type: \"command\", command: \"skaile plugin hook session-start\" }] }],\n    SessionEnd: [{ hooks: [{ type: \"command\", command: \"skaile plugin hook session-end\" }] }],\n    UserPromptSubmit: [\n      { hooks: [{ type: \"command\", command: \"skaile plugin hook user-prompt-submit\" }] },\n    ],\n  },\n};\n\n/**\n * MCP server wiring. Spawns `skaile mcp-server` — a stdio MCP subprocess that\n * runs on plain Node (no Claude Agent SDK).\n */\nconst MCP_JSON = {\n  mcpServers: {\n    \"skaile-workspace\": {\n      command: \"skaile\",\n      args: [\"mcp-server\"],\n      env: {},\n    },\n  },\n};\n\n/**\n * Build the Claude Code plugin directory as an in-memory file map.\n *\n * Returns `{ relativePath: contents }` for every file the installer must\n * write under `<projectDir>/.claude/plugins/skaile/`. The installer is also\n * responsible for populating `skills/` from the project's `.skaile/skills/`.\n *\n * Stateless — no plugin instance, no `boot()`. The generated artifacts carry\n * no project-specific paths: hooks and the MCP server resolve the project\n * directory themselves at runtime.\n *\n * @returns A map of plugin-relative file paths to their string contents.\n *\n * @docLink packages/workspace-plugin/concepts#adapters\n */\nexport function buildClaudePluginFiles(): Record<string, string> {\n  return {\n    \".claude-plugin/plugin.json\": `${JSON.stringify(PLUGIN_JSON, null, 2)}\\n`,\n    \"hooks/hooks.json\": `${JSON.stringify(HOOKS_JSON, null, 2)}\\n`,\n    \".mcp.json\": `${JSON.stringify(MCP_JSON, null, 2)}\\n`,\n    \"skills/.gitkeep\": \"\",\n  };\n}\n","import { readFile, writeFile, mkdir } from \"node:fs/promises\";\nimport { dirname } from \"node:path\";\n\ninterface Subscriber {\n  regex: RegExp;\n  handler: (key: string, value: unknown) => void;\n}\n\n/**\n * Disk-backed reactive key-value store for plugin state.\n *\n * Keeps an in-memory map that can be flushed to / loaded from a JSON file.\n * Supports glob-style subscriptions (`connector:*`, `*`).\n *\n * State is persisted to `<projectDir>/.skaile/plugin-state.json`.\n * The instance is available on {@link WorkspacePlugin} as the public `store`\n * field after `boot()` resolves.\n *\n * @docLink packages/workspace-plugin/concepts#plugin-store\n */\nexport class PluginStore {\n  private readonly statePath: string;\n  private data: Map<string, unknown> = new Map();\n  private subscribers: Subscriber[] = [];\n\n  constructor(statePath: string) {\n    this.statePath = statePath;\n  }\n\n  /** Synchronous read from in-memory map. */\n  get<T>(key: string): T | undefined {\n    return this.data.get(key) as T | undefined;\n  }\n\n  /** Write to in-memory map and notify matching subscribers. */\n  set<T>(key: string, value: T): void {\n    this.data.set(key, value);\n    this.notify(key, value);\n  }\n\n  /** Remove key and notify matching subscribers. */\n  delete(key: string): void {\n    this.data.delete(key);\n    this.notify(key, undefined);\n  }\n\n  /**\n   * Subscribe to changes matching a glob-style pattern.\n   * `*` matches any sequence of characters.\n   * Returns an unsubscribe function.\n   */\n  subscribe(pattern: string, handler: (key: string, value: unknown) => void): () => void {\n    const escaped = pattern.replace(/[.+?^${}()|[\\]\\\\]/g, \"\\\\$&\");\n    const regexStr = `^${escaped.replace(/\\*/g, \".*\")}$`;\n    const sub: Subscriber = { regex: new RegExp(regexStr), handler };\n    this.subscribers.push(sub);\n\n    return () => {\n      const idx = this.subscribers.indexOf(sub);\n      if (idx !== -1) this.subscribers.splice(idx, 1);\n    };\n  }\n\n  /** Rehydrate from disk JSON. Missing file = empty store (no throw). */\n  async load(): Promise<void> {\n    try {\n      const raw = await readFile(this.statePath, \"utf-8\");\n      const parsed = JSON.parse(raw);\n      if (parsed && typeof parsed === \"object\" && !Array.isArray(parsed)) {\n        this.data = new Map(Object.entries(parsed));\n      }\n    } catch (e: unknown) {\n      // Missing file or invalid JSON — start with empty store\n    }\n  }\n\n  /** Write entire store to disk as JSON. Creates parent dirs if needed. */\n  async flush(): Promise<void> {\n    const obj = Object.fromEntries(this.data);\n    const json = JSON.stringify(obj, null, 2);\n    await mkdir(dirname(this.statePath), { recursive: true });\n    await writeFile(this.statePath, json, \"utf-8\");\n  }\n\n  private notify(key: string, value: unknown): void {\n    for (const sub of this.subscribers) {\n      if (sub.regex.test(key)) {\n        sub.handler(key, value);\n      }\n    }\n  }\n}\n","import { readFileSync } from \"node:fs\";\nimport { join } from \"node:path\";\nimport type { ConnectorManager } from \"@skaile/workspaces/connectors\";\nimport { createLogger } from \"@skaile/workspaces/core/logging\";\nimport type { Logger } from \"@skaile/workspaces/types\";\nimport { PluginStore } from \"./store.js\";\n\n/**\n * Construction options for {@link WorkspacePlugin}.\n *\n * At minimum `projectDir` must be supplied.  All other fields are optional\n * and are pre-resolved by the caller when available (e.g. the runner already\n * knows `driver`/`provider`/`model` from its own settings resolution).\n *\n * @docLink packages/workspace-plugin/concepts#workspaceplugin-lifecycle\n */\nexport interface WorkspacePluginOpts {\n  projectDir: string;\n  /**\n   * Active connector manager. The unified `ConnectorManager` owns both\n   * filesystem-face (mountable) and tool-face connectors.\n   */\n  connectorManager?: ConnectorManager;\n  bootOwned?: boolean;\n  onLog?: (msg: string) => void;\n  /** Pre-resolved driver type (avoids needing boot() to read settings). */\n  driver?: string;\n  /** Pre-resolved provider. */\n  provider?: string;\n  /** Pre-resolved model. */\n  model?: string;\n}\n\n/**\n * Shared runtime core for the skaile workspace plugin.\n *\n * Manages the full lifecycle (`boot` → tools available → `shutdown`) and\n * surfaces workspace capabilities — mounts, connectors, flows, skills,\n * sessions, and config validation — through two adapter backends:\n *\n * - **MCP, in-process** (runner): call {@link buildWorkspaceMcpServer} for the\n *   Claude Agent SDK server the runner embeds into its `query()` call.\n * - **MCP, stdio** (`skaile mcp-server`): call {@link runMcpServerStdio} for a\n *   raw `@modelcontextprotocol/sdk` server — no Claude Agent SDK.\n * - **OMP**: call {@link buildOmpToolSet} for the 13-tool native subset and\n *   {@link buildOmpExtensionSource} for the generated extension file.\n *\n * Two boot modes are supported via {@link WorkspacePluginOpts.bootOwned}:\n * - `bootOwned: false` (default) — managers injected externally by the runner.\n * - `bootOwned: true` — plugin owns the full manager lifecycle (standalone MCP\n *   subprocess or OMP extension).\n *\n * @docLink packages/workspace-plugin/concepts#workspaceplugin-lifecycle\n */\nexport class WorkspacePlugin {\n  readonly projectDir: string;\n  connectorManager: ConnectorManager | null;\n  readonly store: PluginStore;\n\n  private readonly bootOwned: boolean;\n  private readonly onLog: (msg: string) => void;\n  private readonly log: Logger = createLogger({\n    kind: \"mcp\",\n    subkind: \"skaile-workspace\",\n  });\n  driver?: string;\n  provider?: string;\n  model?: string;\n\n  constructor(opts: WorkspacePluginOpts) {\n    this.projectDir = opts.projectDir;\n    this.connectorManager = opts.connectorManager ?? null;\n    this.store = new PluginStore(join(opts.projectDir, \".skaile\", \"plugin-state.json\"));\n    this.bootOwned = opts.bootOwned ?? false;\n    if (opts.driver) this.driver = opts.driver;\n    if (opts.provider) this.provider = opts.provider;\n    if (opts.model) this.model = opts.model;\n    this.onLog = opts.onLog ?? (() => {});\n    this.log.debug(\"plugin constructed\", {\n      driver: opts.driver,\n      hasConnectors: !!opts.connectorManager,\n      provider: opts.provider,\n      model: opts.model,\n      bootOwned: this.bootOwned,\n    });\n  }\n\n  async boot(): Promise<void> {\n    if (!this.bootOwned) {\n      // Managers were injected externally — resolve settings only (non-fatal)\n      try {\n        const { resolveSettings } = await import(\"@skaile/workspaces/core\");\n        const settings = await resolveSettings(this.projectDir);\n        this.driver = settings.driver ?? \"omp\";\n        this.provider = settings.provider;\n        this.model = settings.model;\n      } catch {\n        /* non-fatal */\n      }\n      await this.store.load();\n      return;\n    }\n\n    // bootOwned: we own the managers lifecycle\n    try {\n      const { resolveSettings } = await import(\"@skaile/workspaces/core\");\n      const settings = await resolveSettings(this.projectDir);\n      this.driver = settings.driver ?? \"omp\";\n      this.provider = settings.provider;\n      this.model = settings.model;\n    } catch {\n      /* non-fatal */\n    }\n\n    try {\n      const {\n        ConnectorManager,\n        loadConnectorDeclarations,\n        registerBuiltinConnectors,\n        createCliSecretProviderChain,\n      } = await import(\"@skaile/workspaces/connectors\");\n\n      registerBuiltinConnectors();\n\n      const secrets = createCliSecretProviderChain();\n\n      const connectorDecls = await loadConnectorDeclarations(this.projectDir);\n      const cm = new ConnectorManager(this.projectDir, { secrets });\n      await cm.connectAll(connectorDecls);\n      this.connectorManager = cm;\n\n      this.log.info(\"workspace plugin booted\", {\n        connectors: connectorDecls.length,\n      });\n      this.onLog(`WorkspacePlugin booted: ${connectorDecls.length} connectors`);\n    } catch (err) {\n      this.log.warn(\"workspace plugin boot warning\", {\n        error: err instanceof Error ? err.message : String(err),\n      });\n      this.onLog(`WorkspacePlugin boot warning: ${err}`);\n    }\n\n    await this.store.load();\n  }\n\n  async reload(): Promise<void> {\n    if (!this.bootOwned) return;\n    await this.shutdown();\n    await this.boot();\n  }\n\n  async shutdown(): Promise<void> {\n    this.log.info(\"workspace plugin shutdown\");\n    await this.store.flush();\n    if (!this.bootOwned) return;\n    try {\n      await (this.connectorManager as any)?.disconnectAll?.();\n    } catch {\n      /* best-effort */\n    }\n    this.connectorManager = null;\n  }\n\n  buildSystemPromptSection(driver?: string): string {\n    const d = driver ?? this.driver ?? \"unknown\";\n    // The unified ConnectorManager owns both mountable (filesystem-face) and\n    // tool-face connectors. Filesystem-face connectors expose a `mountPath`.\n    const all = (this.connectorManager as any)?.listConnectors?.() ?? [];\n    const mounts = (all as any[]).filter((c) => typeof c.mountPath === \"string\");\n    const connectors = (all as any[]).filter((c) => typeof c.mountPath !== \"string\");\n    const lines = [\"## Workspace (skaile)\", \"\", `Driver: ${d}`, `Project: ${this.projectDir}`];\n    if (mounts.length > 0) {\n      lines.push(\"\", \"Mounts:\");\n      for (const v of mounts) {\n        lines.push(`  · ${v.id} (${v.driver}) → ${v.mountPath ?? \"(unmounted)\"}`);\n      }\n    }\n    if (connectors.length > 0) {\n      lines.push(\"\", \"Connectors:\");\n      for (const c of connectors) {\n        lines.push(`  · ${c.id} (${c.driver})`);\n      }\n    }\n    lines.push(\"\", \"Use workspace_info for full details. Use workspace_validate to check health.\");\n\n    for (const name of [\"SOUL.md\", \"RULES.md\"]) {\n      const skaileOverride = join(this.projectDir, \".skaile\", name);\n      const rootFile = join(this.projectDir, name);\n      for (const candidate of [skaileOverride, rootFile]) {\n        try {\n          const content = readFileSync(candidate, \"utf-8\").trim();\n          if (content) {\n            lines.push(\"\", `## ${name.replace(\".md\", \"\")}`, \"\", content);\n            break;\n          }\n        } catch {\n          // file not found, try next\n        }\n      }\n    }\n\n    return lines.join(\"\\n\");\n  }\n\n  /**\n   * Build the in-process Claude Agent SDK MCP server (runner embedding).\n   * Returns `null` when `@anthropic-ai/claude-agent-sdk` is unavailable.\n   */\n  async buildWorkspaceMcpServer(): Promise<unknown | null> {\n    this.log.info(\"building workspace MCP server\");\n    try {\n      const { buildWorkspaceMcpServer } = await import(\"./adapters/mcp.js\");\n      const server = await buildWorkspaceMcpServer(this);\n      if (server) this.log.info(\"workspace MCP server ready\");\n      else this.log.debug(\"workspace MCP server skipped (no tools)\");\n      return server;\n    } catch (err) {\n      this.log.error(\"workspace MCP server build failed\", err);\n      throw err;\n    }\n  }\n\n  /**\n   * Build the raw `@modelcontextprotocol/sdk` stdio MCP server — no Claude\n   * Agent SDK. Used by the `skaile mcp-server` subprocess. The returned\n   * server is not yet connected to a transport.\n   */\n  async buildWorkspaceMcpStdioServer(): Promise<unknown> {\n    this.log.info(\"building workspace stdio MCP server\");\n    const { buildWorkspaceMcpStdioServer } = await import(\"./adapters/mcp.js\");\n    return buildWorkspaceMcpStdioServer(this);\n  }\n\n  /**\n   * Build and run the stdio MCP server: builds the raw\n   * `@modelcontextprotocol/sdk` server and connects a `StdioServerTransport`.\n   * Used by the `skaile mcp-server` subprocess.\n   */\n  async runMcpServerStdio(): Promise<void> {\n    this.log.info(\"starting workspace stdio MCP server\");\n    const { runMcpServerStdio } = await import(\"./adapters/mcp.js\");\n    await runMcpServerStdio(this);\n  }\n\n  async buildOmpToolSet(): Promise<unknown[]> {\n    const { buildOmpToolSet } = await import(\"./adapters/omp.js\");\n    return buildOmpToolSet(this);\n  }\n\n  async buildOmpExtensionSource(): Promise<string> {\n    const { buildOmpExtensionSource } = await import(\"./adapters/omp.js\");\n    return buildOmpExtensionSource(this.projectDir);\n  }\n\n  async handleSlashCommand(group: string, args: string[]): Promise<string> {\n    const { handleSlashCommand } = await import(\"./adapters/omp.js\");\n    return handleSlashCommand(this, group, args);\n  }\n}\n","// utils/project-dir.ts\n// Centralised project-directory resolution used by all plugin entry points.\n\n/**\n * Resolve the skaile project directory from environment variables.\n *\n * Resolution order:\n * 1. `SKAILE_PROJECT_DIR` (always checked first)\n * 2. Any additional env var keys supplied by the caller (in order)\n * 3. `process.cwd()` as final fallback\n *\n * @param additionalEnvVars - Optional list of extra environment variable names\n *   to check before falling back to `process.cwd()`.\n * @returns Absolute path to the resolved project directory.\n *\n * @example\n * // Claude Code — also checks CLAUDE_PROJECT_DIR\n * const projectDir = resolveProjectDir([\"CLAUDE_PROJECT_DIR\"]);\n *\n * // OMP / standalone — SKAILE_PROJECT_DIR or cwd only\n * const projectDir = resolveProjectDir();\n *\n * @docLink packages/workspace-plugin/concepts#workspaceplugin-lifecycle\n */\nexport function resolveProjectDir(additionalEnvVars?: string[]): string {\n  if (process.env.SKAILE_PROJECT_DIR) return process.env.SKAILE_PROJECT_DIR;\n  for (const key of additionalEnvVars ?? []) {\n    const val = process.env[key];\n    if (val) return val;\n  }\n  return process.cwd();\n}\n"]}

package/dist/{chunk-I3S4BAAR.js → chunk-FEBLE7QX.js}

@@ -836,5 +836,5 @@ var AssetManager = class {
 };
 
 export { AssetManager };
-//# sourceMappingURL=chunk-I3S4BAAR.js.map
-//# sourceMappingURL=chunk-I3S4BAAR.js.map
+//# sourceMappingURL=chunk-FEBLE7QX.js.map
+//# sourceMappingURL=chunk-FEBLE7QX.js.map

package/dist/{chunk-I3S4BAAR.js.map → chunk-FEBLE7QX.js.map}

@@ -1 +1 @@
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* @skaile/asset-manager — programmatic AI asset management API.\n *\n * Manages project-local repositories, dependency resolution, deployment,\n * lock files, patches, and contribution workflows.\n *\n * Usage:\n *   import { AssetManager } from \"@skaile/workspaces/asset-manager\"\n *   const am = new AssetManager({ projectDir: \"/path/to/project\" })\n *   await am.install()\n */\n\nimport { existsSync, lstatSync, readFileSync, readdirSync, rmSync, unlinkSync } from \"node:fs\";\nimport { join, resolve } from \"node:path\";\nimport type {\n  AiComponent,\n  AssetCollision,\n  CatalogEntry,\n  LockFile,\n  RepositoryDeclaration,\n} from \"@skaile/workspaces/core\";\nimport type { DriverTarget } from \"@skaile/workspaces/core\";\nimport {\n  deployedBase,\n  deployedDir,\n  isDeployed,\n  parseAssetRef,\n  resolveRuntimeAssets,\n  resolveSkWorkspaceConfig,\n} from \"@skaile/workspaces/core\";\nimport { buildLockFile, readLock, verifyLock, writeLock } from \"@skaile/workspaces/core\";\nimport {\n  checkRepoStatus,\n  ensureRepo,\n  getGlobalCacheDir,\n  readLinks,\n  resolveAll,\n  resolveAsset,\n  scanRepo,\n} from \"@skaile/workspaces/core\";\nimport {\n  extractForPatch,\n  generatePatch,\n  savePatch,\n  applyPatch as coreApplyPatch,\n} from \"@skaile/workspaces/core\";\nimport type { DeployOptions } from \"./installer.js\";\nimport { createScaffold, deployAll, removeAsset } from \"./installer.js\";\nimport type { HistoryEntry } from \"./history.js\";\nimport { appendHistory, clearHistory, getRecentHistory } from \"./history.js\";\nimport { commitChanges } from \"./contrib.js\";\n\n// Re-export sub-modules\nexport type { DeployOptions } from \"./installer.js\";\nexport type { Log } from \"./renderers.js\";\nexport type { HistoryEntry } from \"./history.js\";\nexport { createScaffold, deployAll, removeAsset } from \"./installer.js\";\nexport { renderAgentToFramework } from \"./renderers.js\";\nexport {\n  appendHistory,\n  clearHistory,\n  getRecentHistory,\n  loadHistory,\n} from \"./history.js\";\n// Contrib helpers (commitChanges et al.) are still used internally by the\n// patch-submit flow but are no longer part of the public API surface — the\n// `skaile repo contrib *` command tree was removed on 2026-05-12.\n\n// ── Types ────────────────────────────────────────────────────────────────────\n\n/**\n * Metadata about a repository declared in `skaile.yaml`.\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport interface RepoInfo {\n  /** Repository name as declared in `skaile.yaml`. */\n  name: string;\n  /** How the repo is sourced: cloned from a URL, mounted from a local path, or symlinked via `skaile repo link`. */\n  kind: \"local\" | \"remote\" | \"linked\";\n  /** Remote URL (present when `kind === \"remote\"`). */\n  url?: string;\n  /** Filesystem path (present when `kind === \"local\"` or `kind === \"linked\"`). */\n  path?: string;\n  /** Git branch configured for this repository. */\n  branch: string;\n  /** Whether the repository has been cloned/resolved locally. */\n  cloned: boolean;\n}\n\n/**\n * Live sync status for a repository.\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport interface RepoStatusInfo {\n  /** Repository name as declared in `skaile.yaml`. */\n  name: string;\n  /** How the repo is sourced. */\n  kind: \"local\" | \"remote\" | \"linked\";\n  /** Number of commits the local clone is behind the remote. */\n  behind: number;\n  /** `true` when the local clone matches the remote HEAD. */\n  upToDate: boolean;\n  /** Error message when status check failed. */\n  error?: string;\n}\n\n/**\n * Result of a full `skaile install` or `skaile add` run.\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport interface InstallResult {\n  /** Asset refs (`kind:name`) successfully deployed in this run. */\n  deployed: string[];\n  /** Asset refs (`kind:name`) removed because they are no longer in the resolved set. */\n  removed: string[];\n  /** Asset refs that could not be resolved in any configured repository. */\n  missing: string[];\n  /** Whether `skaile.lock.yaml` was written or updated. */\n  lockWritten: boolean;\n  /** Assets that exist in multiple repos — the resolved entry shadows others. */\n  collisions: AssetCollision[];\n  /**\n   * npm packages installed as a side effect of resolving runtime asset peer\n   * deps (connectors / mounts declared in skaile.yaml). Empty when nothing\n   * needed installing or when the runtime-deps step was skipped.\n   */\n  npmInstalled?: string[];\n  /**\n   * npm packages that the runtime-deps step tried but failed to install.\n   * Non-fatal — listed for telemetry and CLI reporting.\n   */\n  npmFailed?: string[];\n}\n\n/**\n * An installed asset whose source repository is behind the remote.\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport interface OutdatedEntry {\n  /** Asset kind (`skill`, `agent`, `prompt`, `flow`, `contract`). */\n  kind: string;\n  /** Asset name as registered in the catalog. */\n  name: string;\n  /** Repository that provides this asset. */\n  repository: string;\n  /** Version string recorded in the lock file at install time. */\n  currentVersion: string;\n  /** Number of commits the local repository is behind the remote. */\n  behind: number;\n}\n\n/**\n * A node in the resolved dependency tree (returned by `AssetManager.tree()`).\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport interface DependencyNode {\n  /** Asset ref (`kind:name`) or `\"project\"` for the root node. */\n  ref: string;\n  /** Transitive dependencies resolved by this node. */\n  children: DependencyNode[];\n}\n\n/**\n * A missing dependency detected by `AssetManager.doctor()`.\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport interface DepIssue {\n  /** Kind of the asset that has the unsatisfied requirement. */\n  assetKind: string;\n  /** Name of the asset that has the unsatisfied requirement. */\n  assetName: string;\n  /** Kind of the missing dependency. */\n  depKind: string;\n  /** Name of the missing dependency. */\n  depName: string;\n  /** `true` when the missing dependency exists in a configured repository but has not been installed. */\n  inRepos: boolean;\n}\n\n/**\n * A single deployed asset shown in the workspace overview.\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport interface OverviewEntry {\n  /** Asset kind (`skill`, `agent`, `prompt`, `flow`, `contract`). */\n  kind: string;\n  /** Asset name. */\n  name: string;\n  /** Domain the asset belongs to (from the lock file; `\"unknown\"` when unresolvable). */\n  domain: string;\n  /** Repository that provides this asset. */\n  repository: string;\n  /** Version string from the lock file. */\n  version: string;\n  /**\n   * Sync status relative to the source repository.\n   * - `\"synced\"` — local clone matches remote HEAD\n   * - `\"outdated\"` — local clone is behind the remote\n   * - `\"local\"` — sourced from a local path, no remote to compare\n   * - `\"error\"` — status check failed\n   * - `\"unknown\"` — repository not found or lock entry missing\n   */\n  syncStatus: string;\n}\n\n/**\n * Aggregated workspace overview returned by `AssetManager.overview()`.\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport interface OverviewResult {\n  /** Entries grouped by domain, sorted alphabetically. Each group is sorted by kind then name. */\n  byDomain: Map<string, OverviewEntry[]>;\n  /** Total number of deployed assets. */\n  total: number;\n  /** Sync status for each configured repository. */\n  repos: RepoStatusInfo[];\n}\n\n// ── AssetManager ─────────────────────────────────────────────────────────────\n\n/**\n * Options for constructing an {@link AssetManager}.\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport interface AssetManagerOptions {\n  /** Absolute or relative path to the workspace root (must contain `skaile.yaml`). */\n  projectDir: string;\n  /**\n   * Agent framework to target for asset deployment.\n   * Determines which framework directories (``.claude/``, ``.omp/``, etc.) are used.\n   * Defaults to `\"claude-code\"`.\n   */\n  driverTarget?: DriverTarget;\n  /**\n   * When `true`, assets are installed into the global Skaile cache rather than the\n   * project workspace. Skips `skaile.yaml` dependency updates.\n   */\n  global?: boolean;\n}\n\n/**\n * Programmatic API for managing AI assets in a Skaile workspace.\n *\n * `AssetManager` wraps repository management, catalog search, asset installation,\n * lock-file tracking, patch workflows, and workspace diagnostics. The CLI delegates\n * all `skaile catalog`, `skaile repo`, `skaile install`, `skaile add`, and\n * `skaile init` commands to this class.\n *\n * @example\n * ```typescript\n * import { AssetManager } from \"@skaile/workspaces/asset-manager\";\n *\n * const am = new AssetManager({ projectDir: \"/my-project\" });\n *\n * // Install all dependencies declared in skaile.yaml\n * const result = await am.install();\n * console.log(`Deployed: ${result.deployed.join(\", \")}`);\n *\n * // Add a single skill (resolves transitive deps, updates skaile.yaml)\n * const deployed = am.add(\"skill:my-skill\");\n *\n * // Search the catalog\n * const skills = am.search(\"code review\", \"skill\");\n * ```\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport class AssetManager {\n  /** Resolved absolute path to the workspace root. */\n  readonly projectDir: string;\n  /** Agent framework driver target used for all deploy operations. */\n  readonly driverTarget: DriverTarget;\n  /** Whether this instance operates in global-install mode. */\n  readonly global: boolean;\n\n  constructor(opts: AssetManagerOptions) {\n    this.projectDir = resolve(opts.projectDir);\n    this.driverTarget = opts.driverTarget ?? (\"claude-code\" as DriverTarget);\n    this.global = opts.global ?? false;\n  }\n\n  private get reposDir(): string {\n    return join(this.projectDir, \".skaile\", \"repos\");\n  }\n\n  private get lockPath(): string {\n    return join(this.projectDir, \"skaile.lock.yaml\");\n  }\n\n  private get patchDir(): string {\n    return join(this.projectDir, \".skaile\", \"patches\");\n  }\n\n  private get deployOpts(): DeployOptions {\n    return { driverTarget: this.driverTarget, global: this.global, cwd: this.projectDir };\n  }\n\n  private loadConfig() {\n    // Read raw YAML directly to get fields (dependencies, patches) that\n    // resolveSkWorkspaceConfig doesn't pass through.\n    const configPath = join(this.projectDir, \"skaile.yaml\");\n    let raw: Record<string, any> = {};\n    if (existsSync(configPath)) {\n      try {\n        const { parse } = require(\"yaml\");\n        raw = parse(readFileSync(configPath, \"utf8\")) ?? {};\n      } catch {}\n    }\n\n    const config = resolveSkWorkspaceConfig(this.projectDir);\n\n    const repositories: Record<string, RepositoryDeclaration> = {};\n    let dependencies: string[] = raw.dependencies ?? [];\n    const patches: Record<string, string> = raw.patches ?? {};\n\n    // ai_resources entries are converted into per-call RepositoryDeclaration\n    // map for the install pipeline. New sources are registered with\n    // @skaile/library directly via `skaile source add`.\n    const aiResources = raw.ai_resources ?? config.ai_resources;\n    if (aiResources?.length) {\n      for (const entry of aiResources) {\n        if (repositories[entry.name]) continue;\n        const isUrl = /^(https?:|git@|git:)/.test(entry.path);\n        repositories[entry.name] = isUrl\n          ? { url: entry.path, branch: entry.branch }\n          : { path: entry.path, branch: entry.branch };\n        if (entry.dependencies) {\n          dependencies = [...dependencies, ...entry.dependencies];\n        }\n      }\n    }\n\n    return { repositories, dependencies, patches, config };\n  }\n\n  // ── Install / resolve ──────────────────────────────────────────────────\n\n  /**\n   * Install all dependencies declared in `skaile.yaml`.\n   *\n   * Steps: clone/pull repositories → resolve transitive dependencies → reconcile\n   * (remove stale assets) → deploy new assets → write `skaile.lock.yaml` → record history.\n   *\n   * @param opts - Optional installation options.\n   * @param opts.locked - When `true`, restore the exact versions recorded in the existing\n   *   lock file instead of resolving from source. Throws if no lock file is found.\n   * @returns {@link InstallResult} summarising what was deployed, what was missing, and any collisions.\n   */\n  async install(opts?: { locked?: boolean }): Promise<InstallResult> {\n    const { repositories, dependencies, patches } = this.loadConfig();\n\n    if (opts?.locked) {\n      return this.installLocked(repositories, patches);\n    }\n\n    // 1. Ensure all repos are cloned/pulled\n    for (const [name, decl] of Object.entries(repositories)) {\n      try {\n        ensureRepo(decl, name, this.reposDir, { projectDir: this.projectDir });\n      } catch (err) {\n        return {\n          deployed: [],\n          removed: [],\n          missing: [`repo:${name}`],\n          lockWritten: false,\n          collisions: [],\n        };\n      }\n    }\n\n    // 2. Resolve all dependencies (transitive)\n    const { resolved, missing, resolvedBy, collisions } = resolveAll(\n      dependencies,\n      repositories,\n      this.reposDir,\n      { projectDir: this.projectDir },\n    );\n\n    // 3. Reconcile: remove stale assets (in old lock but not in new resolved set)\n    const oldLock = readLock(this.lockPath);\n    const resolvedRefs = new Set(resolved.map((e) => `${e.kind}:${e.name}`));\n    const removed: string[] = [];\n    if (oldLock) {\n      for (const ref of Object.keys(oldLock.assets)) {\n        if (!resolvedRefs.has(ref)) {\n          const [kind, name] = ref.split(\":\") as [string, string];\n          removeAsset(kind, name, this.deployOpts);\n          removed.push(ref);\n        }\n      }\n    }\n\n    // 4. Deploy new assets\n    const deployed = deployAll(resolved, repositories, patches, this.deployOpts);\n\n    // 5. Write lock file\n    const lockData = buildLockFile(\n      repositories,\n      resolved,\n      resolvedBy,\n      this.reposDir,\n      this.projectDir,\n    );\n    writeLock(this.lockPath, lockData);\n\n    // 6. Record history\n    for (const ref of deployed) {\n      appendHistory(this.projectDir, {\n        ref,\n        action: \"add\",\n        timestamp: new Date().toISOString(),\n        context: this.global ? \"global\" : \"project\",\n      });\n    }\n    for (const ref of removed) {\n      appendHistory(this.projectDir, {\n        ref,\n        action: \"remove\",\n        timestamp: new Date().toISOString(),\n        context: this.global ? \"global\" : \"project\",\n      });\n    }\n\n    // 7. Install npm peer deps for any mount/connector declared in skaile.yaml.\n    //    Runtime drivers/adapters need their npm deps available at the moment\n    //    a session starts — installing them at install-time avoids cryptic\n    //    \"Cannot find module 'pg'\" errors at first connect.\n    const { npmInstalled, npmFailed } = await this.installRuntimeAssetDeps();\n\n    return {\n      deployed,\n      removed,\n      missing,\n      lockWritten: true,\n      collisions,\n      npmInstalled,\n      npmFailed,\n    };\n  }\n\n  /**\n   * Resolve runtime assets and install any missing npm peer deps.\n   *\n   * - Required deps: installed via `bun add --optional`. Failure is recorded\n   *   in `npmFailed` but does not throw — install() proceeds so users get a\n   *   useful error message rather than a hung command.\n   * - Optional deps: not installed automatically (would force every consumer\n   *   to pull every connector's deps). Future: add a flag to opt in.\n   */\n  private async installRuntimeAssetDeps(): Promise<{\n    npmInstalled: string[];\n    npmFailed: string[];\n  }> {\n    const npmInstalled: string[] = [];\n    const npmFailed: string[] = [];\n    let runtimeAssets: Awaited<ReturnType<typeof resolveRuntimeAssets>> | null = null;\n    try {\n      runtimeAssets = await resolveRuntimeAssets(this.projectDir);\n    } catch {\n      // Non-fatal — projects with no skaile.yaml or unresolvable base-assets\n      // simply have no runtime deps to install.\n      return { npmInstalled, npmFailed };\n    }\n\n    const required = runtimeAssets.requiredNpmDeps.required;\n    if (required.length === 0) return { npmInstalled, npmFailed };\n\n    const { findMissingPackages, installNpmPackages } = await import(\n      \"@skaile/workspaces/connectors\"\n    );\n    const missing = findMissingPackages(required, this.projectDir);\n    if (missing.length === 0) return { npmInstalled, npmFailed };\n\n    const result = await installNpmPackages(missing, this.projectDir);\n    if (result.success) {\n      npmInstalled.push(...missing);\n    } else {\n      npmFailed.push(...missing);\n    }\n    return { npmInstalled, npmFailed };\n  }\n\n  private installLocked(\n    repositories: Record<string, RepositoryDeclaration>,\n    patches: Record<string, string>,\n  ): InstallResult {\n    const lock = readLock(this.lockPath);\n    if (!lock) {\n      throw new Error(\"No lock file found. Run `skaile install` first.\");\n    }\n\n    // Ensure repos at pinned commits\n    for (const [name, lockRepo] of Object.entries(lock.repositories)) {\n      const decl = repositories[name] ?? {\n        url: lockRepo.url,\n        path: lockRepo.path,\n        branch: lockRepo.branch,\n      };\n      ensureRepo(decl, name, this.reposDir, { projectDir: this.projectDir });\n    }\n\n    // Verify integrity\n    const verification = verifyLock(lock, this.reposDir);\n    if (!verification.ok) {\n      const issues = [\n        ...verification.drifted.map((r) => `drifted: ${r}`),\n        ...verification.missing.map((r) => `missing: ${r}`),\n      ];\n      throw new Error(`Lock file verification failed:\\n  ${issues.join(\"\\n  \")}`);\n    }\n\n    // Rebuild catalog entries from lock + deploy\n    const resolved: CatalogEntry[] = [];\n    for (const [ref, entry] of Object.entries(lock.assets)) {\n      const [kind, name] = ref.split(\":\") as [string, string];\n      const repoDecl = repositories[entry.repository];\n      let repoDir: string;\n      if (repoDecl?.path) {\n        repoDir = resolve(this.projectDir, repoDecl.path);\n      } else {\n        repoDir = join(this.reposDir, entry.repository);\n      }\n      resolved.push({\n        name,\n        kind: kind as any,\n        description: \"\",\n        source: join(repoDir, entry.source),\n        repository: entry.repository,\n        version: entry.version,\n        requires: [],\n        dependencies: [],\n      });\n    }\n\n    const deployed = deployAll(resolved, repositories, patches, this.deployOpts);\n    return { deployed, removed: [], missing: [], lockWritten: false, collisions: [] };\n  }\n\n  /**\n   * Add a single asset (and its transitive dependencies) to the workspace.\n   *\n   * Resolves `ref`, deploys the asset and all requirements, then records the ref\n   * in `skaile.yaml` `dependencies` so subsequent `skaile install` runs re-deploy it.\n   *\n   * @param ref - Asset ref in `kind:name` or `repo/kind:name` form (e.g. `skill:my-skill`).\n   * @returns Array of asset refs that were deployed in this call.\n   * @throws When the asset cannot be found in any configured repository.\n   */\n  add(ref: string): string[] {\n    const { repositories, patches } = this.loadConfig();\n    const parsed = parseAssetRef(ref);\n\n    // Ensure repos\n    for (const [name, decl] of Object.entries(repositories)) {\n      try {\n        ensureRepo(decl, name, this.reposDir, { projectDir: this.projectDir });\n      } catch {}\n    }\n\n    const entry = resolveAsset(parsed, repositories, this.reposDir);\n    if (!entry) throw new Error(`Asset not found: ${ref}`);\n\n    // Resolve with transitive deps\n    const { resolved, missing } = resolveAll([ref], repositories, this.reposDir);\n    const deployed = deployAll(resolved, repositories, patches, this.deployOpts);\n\n    // Add to skaile.yaml dependencies\n    const depRef = `${parsed.kind}:${parsed.name}`;\n    this.addDependencyToConfig(depRef);\n\n    for (const d of deployed) {\n      appendHistory(this.projectDir, {\n        ref: d,\n        action: \"add\",\n        timestamp: new Date().toISOString(),\n        context: this.global ? \"global\" : \"project\",\n      });\n    }\n\n    return deployed;\n  }\n\n  /**\n   * Remove a deployed asset and unregister it from `skaile.yaml`.\n   *\n   * @param ref - Asset ref in `kind:name` form (e.g. `skill:my-skill`).\n   * @returns `true` if the asset was found and removed, `false` if it was not deployed.\n   */\n  remove(ref: string): boolean {\n    const parsed = parseAssetRef(ref);\n    const ok = removeAsset(parsed.kind, parsed.name, this.deployOpts);\n    if (ok) {\n      const depRef = `${parsed.kind}:${parsed.name}`;\n      this.removeDependencyFromConfig(depRef);\n\n      appendHistory(this.projectDir, {\n        ref: depRef,\n        action: \"remove\",\n        timestamp: new Date().toISOString(),\n        context: this.global ? \"global\" : \"project\",\n      });\n    }\n    return ok;\n  }\n\n  // ── Query ──────────────────────────────────────────────────────────────\n\n  /**\n   * Search the catalog across all configured repositories.\n   *\n   * @param query - Substring to match against entry names and descriptions (case-insensitive).\n   *   Omit to return all entries.\n   * @param kind - Filter by asset kind (`\"skill\"`, `\"agent\"`, `\"prompt\"`, `\"flow\"`, `\"contract\"`).\n   *   Omit to return all kinds.\n   * @returns Array of matching {@link CatalogEntry} objects from all accessible repositories.\n   */\n  search(query?: string, kind?: string): CatalogEntry[] {\n    const { repositories } = this.loadConfig();\n    let all: CatalogEntry[] = [];\n\n    for (const [name, decl] of Object.entries(repositories)) {\n      const repoDir = this.resolveRepoDir(decl, name);\n      if (!repoDir) continue;\n      all = [...all, ...scanRepo(repoDir, name)];\n    }\n\n    if (kind) all = all.filter((e) => e.kind === kind);\n    if (query) {\n      const q = query.toLowerCase();\n      all = all.filter(\n        (e) => e.name.toLowerCase().includes(q) || e.description.toLowerCase().includes(q),\n      );\n    }\n    return all;\n  }\n\n  /**\n   * Look up a single asset's full catalog entry.\n   *\n   * @param ref - Asset ref in `kind:name` or `repo/kind:name` form.\n   * @returns The matching {@link CatalogEntry}, or `null` when not found.\n   */\n  info(ref: string): CatalogEntry | null {\n    const { repositories } = this.loadConfig();\n    const parsed = parseAssetRef(ref);\n\n    for (const [name, decl] of Object.entries(repositories)) {\n      const repoDir = this.resolveRepoDir(decl, name);\n      if (!repoDir) continue;\n      if (parsed.repository && parsed.repository !== name) continue;\n      const entries = scanRepo(repoDir, name);\n      const match = entries.find((e) => e.kind === parsed.kind && e.name === parsed.name);\n      if (match) return match;\n    }\n    return null;\n  }\n\n  /**\n   * List all assets currently deployed in the workspace (or global cache).\n   *\n   * Scans the framework deploy directories rather than the lock file, so it\n   * also returns assets that were installed manually or outside of `skaile install`.\n   *\n   * @param kind - Filter by asset kind. Omit to return all kinds.\n   * @returns Shallow {@link CatalogEntry} objects (description and version will be empty).\n   */\n  listDeployed(kind?: string): CatalogEntry[] {\n    // Bundles are dependency groups, not deployed as files — exclude from scan\n    const kinds = (\n      kind ? [kind] : [\"skill\", \"agent\", \"prompt\", \"flow\", \"contract\"]\n    ) as AiComponent[];\n    const result: CatalogEntry[] = [];\n    const seen = new Set<string>();\n    for (const k of kinds) {\n      try {\n        const base = deployedBase(k, this.driverTarget, this.global, this.projectDir);\n        if (!existsSync(base)) continue;\n        for (const item of readdirSync(base, { withFileTypes: true })) {\n          // Directories and symlinks use the directory name directly (skills, omp agents, etc.)\n          // Files use the stem without extension (claude-code agents → .md, codex agents → .toml,\n          // prompts → .prompt.md, flows → .flow.yaml/.flow.json)\n          let name: string;\n          if (item.isDirectory() || item.isSymbolicLink()) {\n            name = item.name;\n          } else if (item.isFile()) {\n            name = item.name\n              .replace(/\\.prompt\\.md$/, \"\")\n              .replace(/\\.flow\\.(yaml|json)$/, \"\")\n              .replace(/\\.bundle\\.yaml$/, \"\")\n              .replace(/\\.(md|toml|yaml|json)$/, \"\");\n          } else {\n            continue;\n          }\n          const key = `${k}:${name}`;\n          if (seen.has(key)) continue;\n          seen.add(key);\n          result.push({\n            name,\n            kind: k as any,\n            description: \"\",\n            source: join(base, item.name),\n            version: \"\",\n            requires: [],\n            dependencies: [],\n          });\n        }\n      } catch {}\n    }\n    return result;\n  }\n\n  /**\n   * Build an aggregated workspace overview with domain grouping and sync status.\n   *\n   * Combines deployed assets, lock file metadata, and live repository status\n   * into a single structured result. Used by `skaile status`.\n   *\n   * @returns {@link OverviewResult} with entries grouped by domain and per-repo sync status.\n   */\n  overview(): OverviewResult {\n    const { repositories } = this.loadConfig();\n    const lock = readLock(this.lockPath);\n    const deployed = this.listDeployed();\n\n    // Get repo sync status\n    const repoStatuses = new Map<string, RepoStatusInfo>();\n    for (const [name, decl] of Object.entries(repositories)) {\n      const status = checkRepoStatus(decl, name, this.reposDir);\n      repoStatuses.set(name, {\n        name,\n        kind: status.kind,\n        behind: status.behind,\n        upToDate: status.upToDate,\n        error: status.error,\n      });\n    }\n\n    // Build entries with domain + sync info\n    const entries: OverviewEntry[] = [];\n    for (const d of deployed) {\n      // Try to find full info from lock or repos\n      const lockKey = `${d.kind}:${d.name}`;\n      const lockEntry = lock?.assets[lockKey];\n\n      const domain = lockEntry?.domain ?? \"unknown\";\n      const repository = lockEntry?.repository ?? \"\";\n      const version = lockEntry?.version ?? \"\";\n      let syncStatus = \"unknown\";\n\n      // Determine sync status\n      if (repository) {\n        const repoStatus = repoStatuses.get(repository);\n        if (!repoStatus) syncStatus = \"unknown\";\n        else if (repoStatus.kind === \"local\") syncStatus = \"local\";\n        else if (repoStatus.error) syncStatus = \"error\";\n        else if (repoStatus.upToDate) syncStatus = \"synced\";\n        else syncStatus = \"outdated\";\n      }\n\n      entries.push({ kind: d.kind, name: d.name, domain, repository, version, syncStatus });\n    }\n\n    // Group by domain\n    const byDomain = new Map<string, OverviewEntry[]>();\n    for (const e of entries) {\n      if (!byDomain.has(e.domain)) byDomain.set(e.domain, []);\n      byDomain.get(e.domain)!.push(e);\n    }\n\n    // Sort domains alphabetically, entries within domain by kind then name\n    const sorted = new Map<string, OverviewEntry[]>();\n    for (const key of [...byDomain.keys()].sort()) {\n      sorted.set(\n        key,\n        byDomain\n          .get(key)!\n          .sort((a, b) =>\n            a.kind !== b.kind ? a.kind.localeCompare(b.kind) : a.name.localeCompare(b.name),\n          ),\n      );\n    }\n\n    return {\n      byDomain: sorted,\n      total: entries.length,\n      repos: [...repoStatuses.values()],\n    };\n  }\n\n  /**\n   * Build the resolved dependency tree from the lock file.\n   *\n   * @returns Root {@link DependencyNode} with `ref === \"project\"` whose children\n   *   are the directly-declared dependencies, each with their own transitive subtrees.\n   *   Returns a single node with `ref === \"(no lock file)\"` when no lock exists.\n   */\n  tree(): DependencyNode {\n    const lock = readLock(this.lockPath);\n    if (!lock) return { ref: \"(no lock file)\", children: [] };\n\n    const byParent = new Map<string, string[]>();\n    for (const [ref, entry] of Object.entries(lock.assets)) {\n      const parent = entry.resolved_by;\n      if (!byParent.has(parent)) byParent.set(parent, []);\n      byParent.get(parent)!.push(ref);\n    }\n\n    function buildNode(ref: string): DependencyNode {\n      const children = (byParent.get(ref) ?? []).map(buildNode);\n      return { ref, children };\n    }\n\n    const directChildren = byParent.get(\"direct\") ?? [];\n    return {\n      ref: \"project\",\n      children: directChildren.map(buildNode),\n    };\n  }\n\n  /**\n   * Explain why an asset is installed by tracing its dependency chain in the lock file.\n   *\n   * @param ref - Asset ref in `kind:name` form.\n   * @returns Chain of refs from the asset back to `\"direct (skaile.yaml)\"`, or `[]` when\n   *   the asset is not in the lock file.\n   */\n  why(ref: string): string[] {\n    const lock = readLock(this.lockPath);\n    if (!lock) return [];\n    if (!lock.assets[ref]) return []; // not in lock file\n\n    const chain: string[] = [];\n    let current = ref;\n    const seen = new Set<string>();\n    while (current && current !== \"direct\") {\n      if (seen.has(current)) break;\n      seen.add(current);\n      chain.push(current);\n      const entry = lock.assets[current];\n      if (!entry) break;\n      current = entry.resolved_by;\n    }\n    if (current === \"direct\") chain.push(\"direct (skaile.yaml)\");\n    return chain;\n  }\n\n  /**\n   * List installed assets whose source repository is behind the remote.\n   *\n   * Only remote repositories (not local paths) are checked for staleness.\n   *\n   * @returns Array of {@link OutdatedEntry} objects, one per asset in a repository\n   *   that has commits not yet pulled locally.\n   */\n  outdated(): OutdatedEntry[] {\n    const { repositories } = this.loadConfig();\n    const lock = readLock(this.lockPath);\n    if (!lock) return [];\n\n    const result: OutdatedEntry[] = [];\n    for (const [name, lockRepo] of Object.entries(lock.repositories)) {\n      if (!lockRepo.commit || lockRepo.path) continue;\n      const decl = repositories[name];\n      if (!decl) continue;\n      const status = checkRepoStatus(decl, name, this.reposDir);\n      if (status.behind > 0) {\n        for (const [ref, entry] of Object.entries(lock.assets)) {\n          if (entry.repository === name) {\n            const [kind, assetName] = ref.split(\":\") as [string, string];\n            result.push({\n              kind,\n              name: assetName,\n              repository: name,\n              currentVersion: entry.version,\n              behind: status.behind,\n            });\n          }\n        }\n      }\n    }\n    return result;\n  }\n\n  /**\n   * Produce a unified diff between the deployed asset and its catalog source.\n   *\n   * Useful for detecting manual edits to deployed files or verifying that a patch\n   * was applied correctly.\n   *\n   * @param ref - Asset ref in `kind:name` form.\n   * @returns Unified diff string, or `null` when there are no differences or the\n   *   asset is not deployed/resolvable.\n   */\n  diff(ref: string): string | null {\n    const parsed = parseAssetRef(ref);\n    const entry = this.info(ref);\n    if (!entry) return null;\n\n    const deployedPath = join(\n      deployedBase(parsed.kind as AiComponent, this.driverTarget, this.global, this.projectDir),\n      parsed.name,\n    );\n    if (!existsSync(deployedPath) || !existsSync(entry.source)) return null;\n\n    const { spawnSync } = require(\"node:child_process\");\n    const r = spawnSync(\"diff\", [\"-ruN\", entry.source, deployedPath], { encoding: \"utf8\" });\n    return r.status === 1 ? r.stdout : null;\n  }\n\n  // ── Lock ───────────────────────────────────────────────────────────────\n\n  /**\n   * Resolve all declared dependencies and write (or overwrite) `skaile.lock.yaml`.\n   *\n   * Performs repository sync and full dependency resolution without deploying assets.\n   * Use this to regenerate the lock file after manually editing `skaile.yaml`.\n   *\n   * @returns The written {@link LockFile} data.\n   */\n  lock(): LockFile {\n    const { repositories, dependencies } = this.loadConfig();\n\n    for (const [name, decl] of Object.entries(repositories)) {\n      try {\n        ensureRepo(decl, name, this.reposDir, { projectDir: this.projectDir });\n      } catch {}\n    }\n\n    const { resolved, resolvedBy } = resolveAll(dependencies, repositories, this.reposDir);\n    const lockData = buildLockFile(\n      repositories,\n      resolved,\n      resolvedBy,\n      this.reposDir,\n      this.projectDir,\n    );\n    writeLock(this.lockPath, lockData);\n    return lockData;\n  }\n\n  // ── Patch workflow ─────────────────────────────────────────────────────\n\n  /**\n   * Extract a deployed asset into a patch working directory for editing.\n   *\n   * Copies the deployed asset to `.skaile/patches/<kind>-<name>/` so changes\n   * can be made there and then committed as a patch file via `patchCommit`.\n   *\n   * @param ref - Asset ref in `kind:name` form.\n   * @returns Absolute path to the patch working directory.\n   * @throws When the asset cannot be found in the catalog.\n   */\n  patch(ref: string): string {\n    const entry = this.info(ref);\n    if (!entry) throw new Error(`Asset not found: ${ref}`);\n    return extractForPatch(entry, this.patchDir);\n  }\n\n  /**\n   * Generate a `.patch` file from changes made in the patch working directory.\n   *\n   * Diffs the patch working directory against the original catalog source and\n   * writes the result to `.skaile/patches/<kind>-<name>.patch`.\n   *\n   * @param ref - Asset ref in `kind:name` form.\n   * @returns Absolute path to the generated `.patch` file.\n   * @throws When the patch working directory does not exist or no differences are found.\n   */\n  patchCommit(ref: string): string {\n    const parsed = parseAssetRef(ref);\n    const entry = this.info(ref);\n    if (!entry) throw new Error(`Asset not found: ${ref}`);\n\n    const patchedDir = join(this.patchDir, `${parsed.kind}-${parsed.name}`);\n    if (!existsSync(patchedDir)) {\n      throw new Error(`No patch working dir found. Run \\`skaile patch ${ref}\\` first.`);\n    }\n\n    const { dirname } = require(\"node:path\");\n    const originalDir = dirname(entry.source);\n    const content = generatePatch(originalDir, patchedDir);\n    if (!content) throw new Error(\"No differences found.\");\n\n    const patchFile = join(this.patchDir, `${parsed.kind}-${parsed.name}.patch`);\n    savePatch(patchFile, content);\n    return patchFile;\n  }\n\n  /**\n   * Apply the committed patch file to the repository clone and open a contribution branch.\n   *\n   * Applies `.skaile/patches/<kind>-<name>.patch` to the repository clone, creates a\n   * `patch/<kind>-<name>` branch, and stages a commit — ready to push via `contribPush`.\n   *\n   * @param ref - Asset ref in `kind:name` form.\n   * @throws When the asset is not found, has no repository, or the patch file is missing.\n   */\n  patchSubmit(ref: string): void {\n    const parsed = parseAssetRef(ref);\n    const entry = this.info(ref);\n    if (!entry?.repository) throw new Error(`Asset not found or no repository: ${ref}`);\n\n    const { repositories } = this.loadConfig();\n    const decl = repositories[entry.repository];\n    if (!decl?.url) throw new Error(\"Can only submit patches for remote repositories.\");\n\n    const repoDir = join(this.reposDir, entry.repository);\n    const branchName = `patch/${parsed.kind}-${parsed.name}`;\n\n    // Apply patch to repo clone\n    const patchFile = join(this.patchDir, `${parsed.kind}-${parsed.name}.patch`);\n    if (!existsSync(patchFile)) throw new Error(\"No patch file. Run `skaile patch-commit` first.\");\n\n    coreApplyPatch(repoDir, patchFile);\n    commitChanges(repoDir, `fix: improve ${parsed.kind} ${parsed.name}`, branchName);\n  }\n\n  /**\n   * Delete the patch working directory and patch file for an asset.\n   *\n   * @param ref - Asset ref in `kind:name` form.\n   */\n  patchRemove(ref: string): void {\n    const parsed = parseAssetRef(ref);\n    const patchFile = join(this.patchDir, `${parsed.kind}-${parsed.name}.patch`);\n    const patchedDir = join(this.patchDir, `${parsed.kind}-${parsed.name}`);\n    const { rmSync } = require(\"node:fs\");\n    try {\n      rmSync(patchFile);\n    } catch {}\n    try {\n      rmSync(patchedDir, { recursive: true });\n    } catch {}\n  }\n\n  // ── Doctor ─────────────────────────────────────────────────────────────\n\n  /**\n   * Scan deployed assets for unsatisfied transitive dependencies.\n   *\n   * For each deployed asset, checks that all entries in its `requires` list are\n   * also deployed. Returns a list of issues with a flag indicating whether the\n   * missing dependency can be resolved from a configured repository.\n   *\n   * @returns Array of {@link DepIssue} objects. An empty array means the workspace is healthy.\n   */\n  doctor(): DepIssue[] {\n    const { repositories } = this.loadConfig();\n    const deployed = this.listDeployed();\n    const issues: DepIssue[] = [];\n\n    for (const entry of deployed) {\n      const full = this.info(`${entry.kind}:${entry.name}`);\n      if (!full) continue;\n      for (const req of full.requires) {\n        if (\n          !isDeployed(\n            req.kind as AiComponent,\n            req.name,\n            this.driverTarget,\n            this.global,\n            this.projectDir,\n          )\n        ) {\n          const inRepos =\n            resolveAsset({ kind: req.kind, name: req.name }, repositories, this.reposDir) !== null;\n          issues.push({\n            assetKind: entry.kind,\n            assetName: entry.name,\n            depKind: req.kind,\n            depName: req.name,\n            inRepos,\n          });\n        }\n      }\n    }\n    return issues;\n  }\n\n  // ── Scaffold ───────────────────────────────────────────────────────────\n\n  /**\n   * Create a minimal asset scaffold directory (delegates to {@link createScaffold}).\n   *\n   * @param name - Asset name (also used as the directory name).\n   * @param kind - Asset kind: `skill` | `agent` | `bundle` | `flow` | `prompt` | `contract`.\n   * @param destDir - Parent directory to create the asset in.\n   * @returns `{ ok: true, path }` on success, `{ ok: false, path: errorMessage }` if the\n   *   directory already exists.\n   */\n  create(name: string, kind: string, destDir: string): { ok: boolean; path: string } {\n    return createScaffold(name, kind, destDir);\n  }\n\n  // ── Contrib (REMOVED 2026-05-12) ───────────────────────────────────────\n  //\n  // The `contribChanges / contribDiff / contribCommit / contribPush /\n  // contribCompare` methods were retired alongside `skaile repo contrib *`.\n  // The refinement push-back workflow is being re-introduced in Phase 4 as\n  // `skaile publish` + `skaile preset push` against the Library Source model.\n\n  // ── History ────────────────────────────────────────────────────────────\n\n  /**\n   * Return recent asset action history entries, newest first.\n   *\n   * @param limit - Maximum number of entries to return. Defaults to `20`.\n   * @returns Array of {@link HistoryEntry} objects in reverse-chronological order.\n   */\n  history(limit = 20): HistoryEntry[] {\n    return getRecentHistory(this.projectDir, limit);\n  }\n\n  /**\n   * Erase all asset action history for this workspace.\n   */\n  clearHistory(): void {\n    clearHistory(this.projectDir);\n  }\n\n  // ── Clean ───────────────────────────────────────────────────────────────\n\n  /**\n   * Remove deployed assets tracked by the lock file and report unmanaged ones.\n   *\n   * With `opts.all`, also deletes `.skaile/history.yaml`, `.skaile/patches/`,\n   * `.skaile/repos/`, and `skaile.lock.yaml` — effectively resetting the workspace\n   * to a pre-install state.\n   *\n   * @param opts - Optional cleanup options.\n   * @param opts.all - When `true`, remove all Skaile-managed state in addition to deployed assets.\n   * @returns Object with `removed` (successfully cleaned refs), `skipped` (with reasons),\n   *   and `unmanaged` (deployed assets not in the lock file).\n   */\n  clean(opts?: { all?: boolean }): {\n    removed: string[];\n    skipped: Array<{ ref: string; reason: string }>;\n    unmanaged: string[];\n  } {\n    const lock = readLock(this.lockPath);\n    const removed: string[] = [];\n    const skipped: Array<{ ref: string; reason: string }> = [];\n\n    if (lock) {\n      for (const ref of Object.keys(lock.assets)) {\n        const [kind, name] = ref.split(\":\") as [string, string];\n        const dest = deployedDir(\n          kind as AiComponent,\n          name,\n          this.driverTarget,\n          this.global,\n          this.projectDir,\n        );\n\n        try {\n          const stat = lstatSync(dest);\n          if (stat.isSymbolicLink()) unlinkSync(dest);\n          else rmSync(dest, { recursive: true, force: true });\n          removed.push(ref);\n        } catch {\n          // Already gone — count as removed\n          removed.push(ref);\n        }\n      }\n    }\n\n    // Collect unmanaged assets for reporting\n    const lockRefs = lock ? new Set(Object.keys(lock.assets)) : new Set<string>();\n    const unmanaged: string[] = [];\n    const allDeployed = this.listDeployed();\n    for (const d of allDeployed) {\n      const ref = `${d.kind}:${d.name}`;\n      if (!lockRefs.has(ref)) {\n        unmanaged.push(ref);\n      }\n    }\n\n    if (opts?.all) {\n      // Delete history file\n      const historyFile = join(this.projectDir, \".skaile\", \"history.yaml\");\n      try {\n        unlinkSync(historyFile);\n      } catch {}\n\n      // Remove patches dir\n      try {\n        rmSync(this.patchDir, { recursive: true, force: true });\n      } catch {}\n\n      // Remove repos dir\n      try {\n        rmSync(this.reposDir, { recursive: true, force: true });\n      } catch {}\n\n      // Remove lock file\n      try {\n        unlinkSync(this.lockPath);\n      } catch {}\n    }\n\n    return { removed, skipped, unmanaged };\n  }\n\n  // ── Helpers ────────────────────────────────────────────────────────────\n\n  /** Add a dependency ref to skaile.yaml if not already present. */\n  private addDependencyToConfig(ref: string): void {\n    if (this.global) return; // global installs don't modify skaile.yaml\n    const configPath = join(this.projectDir, \"skaile.yaml\");\n    if (!existsSync(configPath)) return;\n    const { parse, stringify } = require(\"yaml\");\n    const raw = parse(readFileSync(configPath, \"utf8\")) ?? {};\n    if (!raw.dependencies) raw.dependencies = [];\n    if (!raw.dependencies.includes(ref)) {\n      raw.dependencies.push(ref);\n      require(\"node:fs\").writeFileSync(configPath, stringify(raw, { lineWidth: 120 }));\n    }\n  }\n\n  /** Remove a dependency ref from skaile.yaml. */\n  private removeDependencyFromConfig(ref: string): void {\n    if (this.global) return;\n    const configPath = join(this.projectDir, \"skaile.yaml\");\n    if (!existsSync(configPath)) return;\n    const { parse, stringify } = require(\"yaml\");\n    const raw = parse(readFileSync(configPath, \"utf8\")) ?? {};\n    if (!raw.dependencies) return;\n    const idx = raw.dependencies.indexOf(ref);\n    if (idx !== -1) {\n      raw.dependencies.splice(idx, 1);\n      require(\"node:fs\").writeFileSync(configPath, stringify(raw, { lineWidth: 120 }));\n    }\n  }\n\n  private resolveRepoDir(decl: RepositoryDeclaration, name: string): string | null {\n    // Check links first\n    const links = readLinks(this.projectDir);\n    if (links[name]) {\n      return existsSync(links[name]) ? links[name] : null;\n    }\n\n    if (decl.path) {\n      const resolved = resolve(this.projectDir, decl.path);\n      return existsSync(resolved) ? resolved : null;\n    }\n\n    // Check project-local symlink, then global cache\n    const dest = join(this.reposDir, name);\n    if (existsSync(dest)) return dest;\n\n    const globalDest = join(getGlobalCacheDir(), name);\n    if (existsSync(join(globalDest, \".git\"))) return globalDest;\n\n    return null;\n  }\n}\n\n// ── Scaffold (merged from @skaile/agent-workspace) ────────────────────────\n\nexport { scaffoldWorkspace, listTemplates, setTemplatesDir } from \"./scaffold/index.js\";\nexport type { ScaffoldOptions, ScaffoldResult, TemplateManifest } from \"./scaffold/index.js\";\n\n// ── Renderers ─────────────────────────────────────────────────────────────\n\nexport {\n  AGENT_RENDERERS,\n  claudeCodeRenderer,\n  codexRenderer,\n  driverTargetSupportsAgents,\n  ompRenderer,\n} from \"./renderers.js\";\nexport type { AgentRenderer, AgentRenderInput, AgentRenderResult } from \"./renderers.js\";\n\n// ── Fragments ─────────────────────────────────────────────────────────────\n\nexport type {\n  AbilityRef,\n  ConnectorRef,\n  ContractRef,\n  FragmentContext,\n  FragmentId,\n} from \"./fragments.js\";\nexport { BUILT_IN_FRAGMENTS, resolveFragments, loadPromptExtensions } from \"./fragments.js\";\n"]}
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* @skaile/asset-manager — programmatic AI asset management API.\n *\n * Manages project-local repositories, dependency resolution, deployment,\n * lock files, patches, and contribution workflows.\n *\n * Usage:\n *   import { AssetManager } from \"@skaile/workspaces/asset-manager\"\n *   const am = new AssetManager({ projectDir: \"/path/to/project\" })\n *   await am.install()\n */\n\nimport { existsSync, lstatSync, readFileSync, readdirSync, rmSync, unlinkSync } from \"node:fs\";\nimport { join, resolve } from \"node:path\";\nimport type {\n  AiComponent,\n  AssetCollision,\n  CatalogEntry,\n  LockFile,\n  RepositoryDeclaration,\n} from \"@skaile/workspaces/core\";\nimport type { DriverTarget } from \"@skaile/workspaces/core\";\nimport {\n  deployedBase,\n  deployedDir,\n  isDeployed,\n  parseAssetRef,\n  resolveRuntimeAssets,\n  resolveSkWorkspaceConfig,\n} from \"@skaile/workspaces/core\";\nimport { buildLockFile, readLock, verifyLock, writeLock } from \"@skaile/workspaces/core\";\nimport {\n  checkRepoStatus,\n  ensureRepo,\n  getGlobalCacheDir,\n  readLinks,\n  resolveAll,\n  resolveAsset,\n  scanRepo,\n} from \"@skaile/workspaces/core\";\nimport {\n  extractForPatch,\n  generatePatch,\n  savePatch,\n  applyPatch as coreApplyPatch,\n} from \"@skaile/workspaces/core\";\nimport type { DeployOptions } from \"./installer.js\";\nimport { createScaffold, deployAll, removeAsset } from \"./installer.js\";\nimport type { HistoryEntry } from \"./history.js\";\nimport { appendHistory, clearHistory, getRecentHistory } from \"./history.js\";\nimport { commitChanges } from \"./contrib.js\";\n\n// Re-export sub-modules\nexport type { DeployOptions } from \"./installer.js\";\nexport type { Log } from \"./renderers.js\";\nexport type { HistoryEntry } from \"./history.js\";\nexport { createScaffold, deployAll, removeAsset } from \"./installer.js\";\nexport { renderAgentToFramework } from \"./renderers.js\";\nexport {\n  appendHistory,\n  clearHistory,\n  getRecentHistory,\n  loadHistory,\n} from \"./history.js\";\n// Contrib helpers (commitChanges et al.) are still used internally by the\n// patch-submit flow but are no longer part of the public API surface — the\n// `skaile repo contrib *` command tree was removed on 2026-05-12.\n\n// ── Types ────────────────────────────────────────────────────────────────────\n\n/**\n * Metadata about a repository declared in `skaile.yaml`.\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport interface RepoInfo {\n  /** Repository name as declared in `skaile.yaml`. */\n  name: string;\n  /** How the repo is sourced: cloned from a URL, mounted from a local path, or symlinked via `skaile repo link`. */\n  kind: \"local\" | \"remote\" | \"linked\";\n  /** Remote URL (present when `kind === \"remote\"`). */\n  url?: string;\n  /** Filesystem path (present when `kind === \"local\"` or `kind === \"linked\"`). */\n  path?: string;\n  /** Git branch configured for this repository. */\n  branch: string;\n  /** Whether the repository has been cloned/resolved locally. */\n  cloned: boolean;\n}\n\n/**\n * Live sync status for a repository.\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport interface RepoStatusInfo {\n  /** Repository name as declared in `skaile.yaml`. */\n  name: string;\n  /** How the repo is sourced. */\n  kind: \"local\" | \"remote\" | \"linked\";\n  /** Number of commits the local clone is behind the remote. */\n  behind: number;\n  /** `true` when the local clone matches the remote HEAD. */\n  upToDate: boolean;\n  /** Error message when status check failed. */\n  error?: string;\n}\n\n/**\n * Result of a full `skaile install` or `skaile add` run.\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport interface InstallResult {\n  /** Asset refs (`kind:name`) successfully deployed in this run. */\n  deployed: string[];\n  /** Asset refs (`kind:name`) removed because they are no longer in the resolved set. */\n  removed: string[];\n  /** Asset refs that could not be resolved in any configured repository. */\n  missing: string[];\n  /** Whether `skaile.lock.yaml` was written or updated. */\n  lockWritten: boolean;\n  /** Assets that exist in multiple repos — the resolved entry shadows others. */\n  collisions: AssetCollision[];\n  /**\n   * npm packages installed as a side effect of resolving runtime asset peer\n   * deps (connectors / mounts declared in skaile.yaml). Empty when nothing\n   * needed installing or when the runtime-deps step was skipped.\n   */\n  npmInstalled?: string[];\n  /**\n   * npm packages that the runtime-deps step tried but failed to install.\n   * Non-fatal — listed for telemetry and CLI reporting.\n   */\n  npmFailed?: string[];\n}\n\n/**\n * An installed asset whose source repository is behind the remote.\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport interface OutdatedEntry {\n  /** Asset kind (`skill`, `agent`, `prompt`, `flow`, `contract`). */\n  kind: string;\n  /** Asset name as registered in the catalog. */\n  name: string;\n  /** Repository that provides this asset. */\n  repository: string;\n  /** Version string recorded in the lock file at install time. */\n  currentVersion: string;\n  /** Number of commits the local repository is behind the remote. */\n  behind: number;\n}\n\n/**\n * A node in the resolved dependency tree (returned by `AssetManager.tree()`).\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport interface DependencyNode {\n  /** Asset ref (`kind:name`) or `\"project\"` for the root node. */\n  ref: string;\n  /** Transitive dependencies resolved by this node. */\n  children: DependencyNode[];\n}\n\n/**\n * A missing dependency detected by `AssetManager.doctor()`.\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport interface DepIssue {\n  /** Kind of the asset that has the unsatisfied requirement. */\n  assetKind: string;\n  /** Name of the asset that has the unsatisfied requirement. */\n  assetName: string;\n  /** Kind of the missing dependency. */\n  depKind: string;\n  /** Name of the missing dependency. */\n  depName: string;\n  /** `true` when the missing dependency exists in a configured repository but has not been installed. */\n  inRepos: boolean;\n}\n\n/**\n * A single deployed asset shown in the workspace overview.\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport interface OverviewEntry {\n  /** Asset kind (`skill`, `agent`, `prompt`, `flow`, `contract`). */\n  kind: string;\n  /** Asset name. */\n  name: string;\n  /** Domain the asset belongs to (from the lock file; `\"unknown\"` when unresolvable). */\n  domain: string;\n  /** Repository that provides this asset. */\n  repository: string;\n  /** Version string from the lock file. */\n  version: string;\n  /**\n   * Sync status relative to the source repository.\n   * - `\"synced\"` — local clone matches remote HEAD\n   * - `\"outdated\"` — local clone is behind the remote\n   * - `\"local\"` — sourced from a local path, no remote to compare\n   * - `\"error\"` — status check failed\n   * - `\"unknown\"` — repository not found or lock entry missing\n   */\n  syncStatus: string;\n}\n\n/**\n * Aggregated workspace overview returned by `AssetManager.overview()`.\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport interface OverviewResult {\n  /** Entries grouped by domain, sorted alphabetically. Each group is sorted by kind then name. */\n  byDomain: Map<string, OverviewEntry[]>;\n  /** Total number of deployed assets. */\n  total: number;\n  /** Sync status for each configured repository. */\n  repos: RepoStatusInfo[];\n}\n\n// ── AssetManager ─────────────────────────────────────────────────────────────\n\n/**\n * Options for constructing an {@link AssetManager}.\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport interface AssetManagerOptions {\n  /** Absolute or relative path to the workspace root (must contain `skaile.yaml`). */\n  projectDir: string;\n  /**\n   * Agent framework to target for asset deployment.\n   * Determines which framework directories (``.claude/``, ``.omp/``, etc.) are used.\n   * Defaults to `\"claude-code\"`.\n   */\n  driverTarget?: DriverTarget;\n  /**\n   * When `true`, assets are installed into the global Skaile cache rather than the\n   * project workspace. Skips `skaile.yaml` dependency updates.\n   */\n  global?: boolean;\n}\n\n/**\n * Programmatic API for managing AI assets in a Skaile workspace.\n *\n * `AssetManager` wraps repository management, catalog search, asset installation,\n * lock-file tracking, patch workflows, and workspace diagnostics. The CLI delegates\n * all `skaile catalog`, `skaile repo`, `skaile install`, `skaile add`, and\n * `skaile init` commands to this class.\n *\n * @example\n * ```typescript\n * import { AssetManager } from \"@skaile/workspaces/asset-manager\";\n *\n * const am = new AssetManager({ projectDir: \"/my-project\" });\n *\n * // Install all dependencies declared in skaile.yaml\n * const result = await am.install();\n * console.log(`Deployed: ${result.deployed.join(\", \")}`);\n *\n * // Add a single skill (resolves transitive deps, updates skaile.yaml)\n * const deployed = am.add(\"skill:my-skill\");\n *\n * // Search the catalog\n * const skills = am.search(\"code review\", \"skill\");\n * ```\n *\n * @docLink packages/asset-manager/concepts#asset-manager\n */\nexport class AssetManager {\n  /** Resolved absolute path to the workspace root. */\n  readonly projectDir: string;\n  /** Agent framework driver target used for all deploy operations. */\n  readonly driverTarget: DriverTarget;\n  /** Whether this instance operates in global-install mode. */\n  readonly global: boolean;\n\n  constructor(opts: AssetManagerOptions) {\n    this.projectDir = resolve(opts.projectDir);\n    this.driverTarget = opts.driverTarget ?? (\"claude-code\" as DriverTarget);\n    this.global = opts.global ?? false;\n  }\n\n  private get reposDir(): string {\n    return join(this.projectDir, \".skaile\", \"repos\");\n  }\n\n  private get lockPath(): string {\n    return join(this.projectDir, \"skaile.lock.yaml\");\n  }\n\n  private get patchDir(): string {\n    return join(this.projectDir, \".skaile\", \"patches\");\n  }\n\n  private get deployOpts(): DeployOptions {\n    return { driverTarget: this.driverTarget, global: this.global, cwd: this.projectDir };\n  }\n\n  private loadConfig() {\n    // Read raw YAML directly to get fields (dependencies, patches) that\n    // resolveSkWorkspaceConfig doesn't pass through.\n    const configPath = join(this.projectDir, \"skaile.yaml\");\n    let raw: Record<string, any> = {};\n    if (existsSync(configPath)) {\n      try {\n        const { parse } = require(\"yaml\");\n        raw = parse(readFileSync(configPath, \"utf8\")) ?? {};\n      } catch {}\n    }\n\n    const config = resolveSkWorkspaceConfig(this.projectDir);\n\n    const repositories: Record<string, RepositoryDeclaration> = {};\n    let dependencies: string[] = raw.dependencies ?? [];\n    const patches: Record<string, string> = raw.patches ?? {};\n\n    // ai_resources entries are converted into per-call RepositoryDeclaration\n    // map for the install pipeline. New sources are registered with\n    // @skaile/library directly via `skaile source add`.\n    const aiResources = raw.ai_resources ?? config.ai_resources;\n    if (aiResources?.length) {\n      for (const entry of aiResources) {\n        if (repositories[entry.name]) continue;\n        const isUrl = /^(https?:|git@|git:)/.test(entry.path);\n        repositories[entry.name] = isUrl\n          ? { url: entry.path, branch: entry.branch }\n          : { path: entry.path, branch: entry.branch };\n        if (entry.dependencies) {\n          dependencies = [...dependencies, ...entry.dependencies];\n        }\n      }\n    }\n\n    return { repositories, dependencies, patches, config };\n  }\n\n  // ── Install / resolve ──────────────────────────────────────────────────\n\n  /**\n   * Install all dependencies declared in `skaile.yaml`.\n   *\n   * Steps: clone/pull repositories → resolve transitive dependencies → reconcile\n   * (remove stale assets) → deploy new assets → write `skaile.lock.yaml` → record history.\n   *\n   * @param opts - Optional installation options.\n   * @param opts.locked - When `true`, restore the exact versions recorded in the existing\n   *   lock file instead of resolving from source. Throws if no lock file is found.\n   * @returns {@link InstallResult} summarising what was deployed, what was missing, and any collisions.\n   */\n  async install(opts?: { locked?: boolean }): Promise<InstallResult> {\n    const { repositories, dependencies, patches } = this.loadConfig();\n\n    if (opts?.locked) {\n      return this.installLocked(repositories, patches);\n    }\n\n    // 1. Ensure all repos are cloned/pulled\n    for (const [name, decl] of Object.entries(repositories)) {\n      try {\n        ensureRepo(decl, name, this.reposDir, { projectDir: this.projectDir });\n      } catch (err) {\n        return {\n          deployed: [],\n          removed: [],\n          missing: [`repo:${name}`],\n          lockWritten: false,\n          collisions: [],\n        };\n      }\n    }\n\n    // 2. Resolve all dependencies (transitive)\n    const { resolved, missing, resolvedBy, collisions } = resolveAll(\n      dependencies,\n      repositories,\n      this.reposDir,\n      { projectDir: this.projectDir },\n    );\n\n    // 3. Reconcile: remove stale assets (in old lock but not in new resolved set)\n    const oldLock = readLock(this.lockPath);\n    const resolvedRefs = new Set(resolved.map((e) => `${e.kind}:${e.name}`));\n    const removed: string[] = [];\n    if (oldLock) {\n      for (const ref of Object.keys(oldLock.assets)) {\n        if (!resolvedRefs.has(ref)) {\n          const [kind, name] = ref.split(\":\") as [string, string];\n          removeAsset(kind, name, this.deployOpts);\n          removed.push(ref);\n        }\n      }\n    }\n\n    // 4. Deploy new assets\n    const deployed = deployAll(resolved, repositories, patches, this.deployOpts);\n\n    // 5. Write lock file\n    const lockData = buildLockFile(\n      repositories,\n      resolved,\n      resolvedBy,\n      this.reposDir,\n      this.projectDir,\n    );\n    writeLock(this.lockPath, lockData);\n\n    // 6. Record history\n    for (const ref of deployed) {\n      appendHistory(this.projectDir, {\n        ref,\n        action: \"add\",\n        timestamp: new Date().toISOString(),\n        context: this.global ? \"global\" : \"project\",\n      });\n    }\n    for (const ref of removed) {\n      appendHistory(this.projectDir, {\n        ref,\n        action: \"remove\",\n        timestamp: new Date().toISOString(),\n        context: this.global ? \"global\" : \"project\",\n      });\n    }\n\n    // 7. Install npm peer deps for any mount/connector declared in skaile.yaml.\n    //    Runtime drivers/adapters need their npm deps available at the moment\n    //    a session starts — installing them at install-time avoids cryptic\n    //    \"Cannot find module 'pg'\" errors at first connect.\n    const { npmInstalled, npmFailed } = await this.installRuntimeAssetDeps();\n\n    return {\n      deployed,\n      removed,\n      missing,\n      lockWritten: true,\n      collisions,\n      npmInstalled,\n      npmFailed,\n    };\n  }\n\n  /**\n   * Resolve runtime assets and install any missing npm peer deps.\n   *\n   * - Required deps: installed via `bun add --optional`. Failure is recorded\n   *   in `npmFailed` but does not throw — install() proceeds so users get a\n   *   useful error message rather than a hung command.\n   * - Optional deps: not installed automatically (would force every consumer\n   *   to pull every connector's deps). Future: add a flag to opt in.\n   */\n  private async installRuntimeAssetDeps(): Promise<{\n    npmInstalled: string[];\n    npmFailed: string[];\n  }> {\n    const npmInstalled: string[] = [];\n    const npmFailed: string[] = [];\n    let runtimeAssets: Awaited<ReturnType<typeof resolveRuntimeAssets>> | null = null;\n    try {\n      runtimeAssets = await resolveRuntimeAssets(this.projectDir);\n    } catch {\n      // Non-fatal — projects with no skaile.yaml or unresolvable base-assets\n      // simply have no runtime deps to install.\n      return { npmInstalled, npmFailed };\n    }\n\n    const required = runtimeAssets.requiredNpmDeps.required;\n    if (required.length === 0) return { npmInstalled, npmFailed };\n\n    const { findMissingPackages, installNpmPackages } = await import(\n      \"@skaile/workspaces/connectors\"\n    );\n    const missing = findMissingPackages(required, this.projectDir);\n    if (missing.length === 0) return { npmInstalled, npmFailed };\n\n    const result = await installNpmPackages(missing, this.projectDir);\n    if (result.success) {\n      npmInstalled.push(...missing);\n    } else {\n      npmFailed.push(...missing);\n    }\n    return { npmInstalled, npmFailed };\n  }\n\n  private installLocked(\n    repositories: Record<string, RepositoryDeclaration>,\n    patches: Record<string, string>,\n  ): InstallResult {\n    const lock = readLock(this.lockPath);\n    if (!lock) {\n      throw new Error(\"No lock file found. Run `skaile install` first.\");\n    }\n\n    // Ensure repos at pinned commits\n    for (const [name, lockRepo] of Object.entries(lock.repositories)) {\n      const decl = repositories[name] ?? {\n        url: lockRepo.url,\n        path: lockRepo.path,\n        branch: lockRepo.branch,\n      };\n      ensureRepo(decl, name, this.reposDir, { projectDir: this.projectDir });\n    }\n\n    // Verify integrity\n    const verification = verifyLock(lock, this.reposDir);\n    if (!verification.ok) {\n      const issues = [\n        ...verification.drifted.map((r) => `drifted: ${r}`),\n        ...verification.missing.map((r) => `missing: ${r}`),\n      ];\n      throw new Error(`Lock file verification failed:\\n  ${issues.join(\"\\n  \")}`);\n    }\n\n    // Rebuild catalog entries from lock + deploy\n    const resolved: CatalogEntry[] = [];\n    for (const [ref, entry] of Object.entries(lock.assets)) {\n      const [kind, name] = ref.split(\":\") as [string, string];\n      const repoDecl = repositories[entry.repository];\n      let repoDir: string;\n      if (repoDecl?.path) {\n        repoDir = resolve(this.projectDir, repoDecl.path);\n      } else {\n        repoDir = join(this.reposDir, entry.repository);\n      }\n      resolved.push({\n        name,\n        kind: kind as any,\n        description: \"\",\n        source: join(repoDir, entry.source),\n        repository: entry.repository,\n        version: entry.version,\n        requires: [],\n        dependencies: [],\n      });\n    }\n\n    const deployed = deployAll(resolved, repositories, patches, this.deployOpts);\n    return { deployed, removed: [], missing: [], lockWritten: false, collisions: [] };\n  }\n\n  /**\n   * Add a single asset (and its transitive dependencies) to the workspace.\n   *\n   * Resolves `ref`, deploys the asset and all requirements, then records the ref\n   * in `skaile.yaml` `dependencies` so subsequent `skaile install` runs re-deploy it.\n   *\n   * @param ref - Asset ref in `kind:name` or `repo/kind:name` form (e.g. `skill:my-skill`).\n   * @returns Array of asset refs that were deployed in this call.\n   * @throws When the asset cannot be found in any configured repository.\n   */\n  add(ref: string): string[] {\n    const { repositories, patches } = this.loadConfig();\n    const parsed = parseAssetRef(ref);\n\n    // Ensure repos\n    for (const [name, decl] of Object.entries(repositories)) {\n      try {\n        ensureRepo(decl, name, this.reposDir, { projectDir: this.projectDir });\n      } catch {}\n    }\n\n    const entry = resolveAsset(parsed, repositories, this.reposDir);\n    if (!entry) throw new Error(`Asset not found: ${ref}`);\n\n    // Resolve with transitive deps\n    const { resolved, missing } = resolveAll([ref], repositories, this.reposDir);\n    const deployed = deployAll(resolved, repositories, patches, this.deployOpts);\n\n    // Add to skaile.yaml dependencies\n    const depRef = `${parsed.kind}:${parsed.name}`;\n    this.addDependencyToConfig(depRef);\n\n    for (const d of deployed) {\n      appendHistory(this.projectDir, {\n        ref: d,\n        action: \"add\",\n        timestamp: new Date().toISOString(),\n        context: this.global ? \"global\" : \"project\",\n      });\n    }\n\n    return deployed;\n  }\n\n  /**\n   * Remove a deployed asset and unregister it from `skaile.yaml`.\n   *\n   * @param ref - Asset ref in `kind:name` form (e.g. `skill:my-skill`).\n   * @returns `true` if the asset was found and removed, `false` if it was not deployed.\n   */\n  remove(ref: string): boolean {\n    const parsed = parseAssetRef(ref);\n    const ok = removeAsset(parsed.kind, parsed.name, this.deployOpts);\n    if (ok) {\n      const depRef = `${parsed.kind}:${parsed.name}`;\n      this.removeDependencyFromConfig(depRef);\n\n      appendHistory(this.projectDir, {\n        ref: depRef,\n        action: \"remove\",\n        timestamp: new Date().toISOString(),\n        context: this.global ? \"global\" : \"project\",\n      });\n    }\n    return ok;\n  }\n\n  // ── Query ──────────────────────────────────────────────────────────────\n\n  /**\n   * Search the catalog across all configured repositories.\n   *\n   * @param query - Substring to match against entry names and descriptions (case-insensitive).\n   *   Omit to return all entries.\n   * @param kind - Filter by asset kind (`\"skill\"`, `\"agent\"`, `\"prompt\"`, `\"flow\"`, `\"contract\"`).\n   *   Omit to return all kinds.\n   * @returns Array of matching {@link CatalogEntry} objects from all accessible repositories.\n   */\n  search(query?: string, kind?: string): CatalogEntry[] {\n    const { repositories } = this.loadConfig();\n    let all: CatalogEntry[] = [];\n\n    for (const [name, decl] of Object.entries(repositories)) {\n      const repoDir = this.resolveRepoDir(decl, name);\n      if (!repoDir) continue;\n      all = [...all, ...scanRepo(repoDir, name)];\n    }\n\n    if (kind) all = all.filter((e) => e.kind === kind);\n    if (query) {\n      const q = query.toLowerCase();\n      all = all.filter(\n        (e) => e.name.toLowerCase().includes(q) || e.description.toLowerCase().includes(q),\n      );\n    }\n    return all;\n  }\n\n  /**\n   * Look up a single asset's full catalog entry.\n   *\n   * @param ref - Asset ref in `kind:name` or `repo/kind:name` form.\n   * @returns The matching {@link CatalogEntry}, or `null` when not found.\n   */\n  info(ref: string): CatalogEntry | null {\n    const { repositories } = this.loadConfig();\n    const parsed = parseAssetRef(ref);\n\n    for (const [name, decl] of Object.entries(repositories)) {\n      const repoDir = this.resolveRepoDir(decl, name);\n      if (!repoDir) continue;\n      if (parsed.repository && parsed.repository !== name) continue;\n      const entries = scanRepo(repoDir, name);\n      const match = entries.find((e) => e.kind === parsed.kind && e.name === parsed.name);\n      if (match) return match;\n    }\n    return null;\n  }\n\n  /**\n   * List all assets currently deployed in the workspace (or global cache).\n   *\n   * Scans the framework deploy directories rather than the lock file, so it\n   * also returns assets that were installed manually or outside of `skaile install`.\n   *\n   * @param kind - Filter by asset kind. Omit to return all kinds.\n   * @returns Shallow {@link CatalogEntry} objects (description and version will be empty).\n   */\n  listDeployed(kind?: string): CatalogEntry[] {\n    // Bundles are dependency groups, not deployed as files — exclude from scan\n    const kinds = (\n      kind ? [kind] : [\"skill\", \"agent\", \"prompt\", \"flow\", \"contract\"]\n    ) as AiComponent[];\n    const result: CatalogEntry[] = [];\n    const seen = new Set<string>();\n    for (const k of kinds) {\n      try {\n        const base = deployedBase(k, this.driverTarget, this.global, this.projectDir);\n        if (!existsSync(base)) continue;\n        for (const item of readdirSync(base, { withFileTypes: true })) {\n          // Directories and symlinks use the directory name directly (skills, omp agents, etc.)\n          // Files use the stem without extension (claude-code agents → .md, codex agents → .toml,\n          // prompts → .prompt.md, flows → .flow.yaml/.flow.json)\n          let name: string;\n          if (item.isDirectory() || item.isSymbolicLink()) {\n            name = item.name;\n          } else if (item.isFile()) {\n            name = item.name\n              .replace(/\\.prompt\\.md$/, \"\")\n              .replace(/\\.flow\\.(yaml|json)$/, \"\")\n              .replace(/\\.bundle\\.yaml$/, \"\")\n              .replace(/\\.(md|toml|yaml|json)$/, \"\");\n          } else {\n            continue;\n          }\n          const key = `${k}:${name}`;\n          if (seen.has(key)) continue;\n          seen.add(key);\n          result.push({\n            name,\n            kind: k as any,\n            description: \"\",\n            source: join(base, item.name),\n            version: \"\",\n            requires: [],\n            dependencies: [],\n          });\n        }\n      } catch {}\n    }\n    return result;\n  }\n\n  /**\n   * Build an aggregated workspace overview with domain grouping and sync status.\n   *\n   * Combines deployed assets, lock file metadata, and live repository status\n   * into a single structured result. Used by `skaile status`.\n   *\n   * @returns {@link OverviewResult} with entries grouped by domain and per-repo sync status.\n   */\n  overview(): OverviewResult {\n    const { repositories } = this.loadConfig();\n    const lock = readLock(this.lockPath);\n    const deployed = this.listDeployed();\n\n    // Get repo sync status\n    const repoStatuses = new Map<string, RepoStatusInfo>();\n    for (const [name, decl] of Object.entries(repositories)) {\n      const status = checkRepoStatus(decl, name, this.reposDir);\n      repoStatuses.set(name, {\n        name,\n        kind: status.kind,\n        behind: status.behind,\n        upToDate: status.upToDate,\n        error: status.error,\n      });\n    }\n\n    // Build entries with domain + sync info\n    const entries: OverviewEntry[] = [];\n    for (const d of deployed) {\n      // Try to find full info from lock or repos\n      const lockKey = `${d.kind}:${d.name}`;\n      const lockEntry = lock?.assets[lockKey];\n\n      const domain = lockEntry?.domain ?? \"unknown\";\n      const repository = lockEntry?.repository ?? \"\";\n      const version = lockEntry?.version ?? \"\";\n      let syncStatus = \"unknown\";\n\n      // Determine sync status\n      if (repository) {\n        const repoStatus = repoStatuses.get(repository);\n        if (!repoStatus) syncStatus = \"unknown\";\n        else if (repoStatus.kind === \"local\") syncStatus = \"local\";\n        else if (repoStatus.error) syncStatus = \"error\";\n        else if (repoStatus.upToDate) syncStatus = \"synced\";\n        else syncStatus = \"outdated\";\n      }\n\n      entries.push({ kind: d.kind, name: d.name, domain, repository, version, syncStatus });\n    }\n\n    // Group by domain\n    const byDomain = new Map<string, OverviewEntry[]>();\n    for (const e of entries) {\n      if (!byDomain.has(e.domain)) byDomain.set(e.domain, []);\n      byDomain.get(e.domain)!.push(e);\n    }\n\n    // Sort domains alphabetically, entries within domain by kind then name\n    const sorted = new Map<string, OverviewEntry[]>();\n    for (const key of [...byDomain.keys()].sort()) {\n      sorted.set(\n        key,\n        byDomain\n          .get(key)!\n          .sort((a, b) =>\n            a.kind !== b.kind ? a.kind.localeCompare(b.kind) : a.name.localeCompare(b.name),\n          ),\n      );\n    }\n\n    return {\n      byDomain: sorted,\n      total: entries.length,\n      repos: [...repoStatuses.values()],\n    };\n  }\n\n  /**\n   * Build the resolved dependency tree from the lock file.\n   *\n   * @returns Root {@link DependencyNode} with `ref === \"project\"` whose children\n   *   are the directly-declared dependencies, each with their own transitive subtrees.\n   *   Returns a single node with `ref === \"(no lock file)\"` when no lock exists.\n   */\n  tree(): DependencyNode {\n    const lock = readLock(this.lockPath);\n    if (!lock) return { ref: \"(no lock file)\", children: [] };\n\n    const byParent = new Map<string, string[]>();\n    for (const [ref, entry] of Object.entries(lock.assets)) {\n      const parent = entry.resolved_by;\n      if (!byParent.has(parent)) byParent.set(parent, []);\n      byParent.get(parent)!.push(ref);\n    }\n\n    function buildNode(ref: string): DependencyNode {\n      const children = (byParent.get(ref) ?? []).map(buildNode);\n      return { ref, children };\n    }\n\n    const directChildren = byParent.get(\"direct\") ?? [];\n    return {\n      ref: \"project\",\n      children: directChildren.map(buildNode),\n    };\n  }\n\n  /**\n   * Explain why an asset is installed by tracing its dependency chain in the lock file.\n   *\n   * @param ref - Asset ref in `kind:name` form.\n   * @returns Chain of refs from the asset back to `\"direct (skaile.yaml)\"`, or `[]` when\n   *   the asset is not in the lock file.\n   */\n  why(ref: string): string[] {\n    const lock = readLock(this.lockPath);\n    if (!lock) return [];\n    if (!lock.assets[ref]) return []; // not in lock file\n\n    const chain: string[] = [];\n    let current = ref;\n    const seen = new Set<string>();\n    while (current && current !== \"direct\") {\n      if (seen.has(current)) break;\n      seen.add(current);\n      chain.push(current);\n      const entry = lock.assets[current];\n      if (!entry) break;\n      current = entry.resolved_by;\n    }\n    if (current === \"direct\") chain.push(\"direct (skaile.yaml)\");\n    return chain;\n  }\n\n  /**\n   * List installed assets whose source repository is behind the remote.\n   *\n   * Only remote repositories (not local paths) are checked for staleness.\n   *\n   * @returns Array of {@link OutdatedEntry} objects, one per asset in a repository\n   *   that has commits not yet pulled locally.\n   */\n  outdated(): OutdatedEntry[] {\n    const { repositories } = this.loadConfig();\n    const lock = readLock(this.lockPath);\n    if (!lock) return [];\n\n    const result: OutdatedEntry[] = [];\n    for (const [name, lockRepo] of Object.entries(lock.repositories)) {\n      if (!lockRepo.commit || lockRepo.path) continue;\n      const decl = repositories[name];\n      if (!decl) continue;\n      const status = checkRepoStatus(decl, name, this.reposDir);\n      if (status.behind > 0) {\n        for (const [ref, entry] of Object.entries(lock.assets)) {\n          if (entry.repository === name) {\n            const [kind, assetName] = ref.split(\":\") as [string, string];\n            result.push({\n              kind,\n              name: assetName,\n              repository: name,\n              currentVersion: entry.version,\n              behind: status.behind,\n            });\n          }\n        }\n      }\n    }\n    return result;\n  }\n\n  /**\n   * Produce a unified diff between the deployed asset and its catalog source.\n   *\n   * Useful for detecting manual edits to deployed files or verifying that a patch\n   * was applied correctly.\n   *\n   * @param ref - Asset ref in `kind:name` form.\n   * @returns Unified diff string, or `null` when there are no differences or the\n   *   asset is not deployed/resolvable.\n   */\n  diff(ref: string): string | null {\n    const parsed = parseAssetRef(ref);\n    const entry = this.info(ref);\n    if (!entry) return null;\n\n    const deployedPath = join(\n      deployedBase(parsed.kind as AiComponent, this.driverTarget, this.global, this.projectDir),\n      parsed.name,\n    );\n    if (!existsSync(deployedPath) || !existsSync(entry.source)) return null;\n\n    const { spawnSync } = require(\"node:child_process\");\n    const r = spawnSync(\"diff\", [\"-ruN\", entry.source, deployedPath], { encoding: \"utf8\" });\n    return r.status === 1 ? r.stdout : null;\n  }\n\n  // ── Lock ───────────────────────────────────────────────────────────────\n\n  /**\n   * Resolve all declared dependencies and write (or overwrite) `skaile.lock.yaml`.\n   *\n   * Performs repository sync and full dependency resolution without deploying assets.\n   * Use this to regenerate the lock file after manually editing `skaile.yaml`.\n   *\n   * @returns The written {@link LockFile} data.\n   */\n  lock(): LockFile {\n    const { repositories, dependencies } = this.loadConfig();\n\n    for (const [name, decl] of Object.entries(repositories)) {\n      try {\n        ensureRepo(decl, name, this.reposDir, { projectDir: this.projectDir });\n      } catch {}\n    }\n\n    const { resolved, resolvedBy } = resolveAll(dependencies, repositories, this.reposDir);\n    const lockData = buildLockFile(\n      repositories,\n      resolved,\n      resolvedBy,\n      this.reposDir,\n      this.projectDir,\n    );\n    writeLock(this.lockPath, lockData);\n    return lockData;\n  }\n\n  // ── Patch workflow ─────────────────────────────────────────────────────\n\n  /**\n   * Extract a deployed asset into a patch working directory for editing.\n   *\n   * Copies the deployed asset to `.skaile/patches/<kind>-<name>/` so changes\n   * can be made there and then committed as a patch file via `patchCommit`.\n   *\n   * @param ref - Asset ref in `kind:name` form.\n   * @returns Absolute path to the patch working directory.\n   * @throws When the asset cannot be found in the catalog.\n   */\n  patch(ref: string): string {\n    const entry = this.info(ref);\n    if (!entry) throw new Error(`Asset not found: ${ref}`);\n    return extractForPatch(entry, this.patchDir);\n  }\n\n  /**\n   * Generate a `.patch` file from changes made in the patch working directory.\n   *\n   * Diffs the patch working directory against the original catalog source and\n   * writes the result to `.skaile/patches/<kind>-<name>.patch`.\n   *\n   * @param ref - Asset ref in `kind:name` form.\n   * @returns Absolute path to the generated `.patch` file.\n   * @throws When the patch working directory does not exist or no differences are found.\n   */\n  patchCommit(ref: string): string {\n    const parsed = parseAssetRef(ref);\n    const entry = this.info(ref);\n    if (!entry) throw new Error(`Asset not found: ${ref}`);\n\n    const patchedDir = join(this.patchDir, `${parsed.kind}-${parsed.name}`);\n    if (!existsSync(patchedDir)) {\n      throw new Error(`No patch working dir found. Run \\`skaile patch ${ref}\\` first.`);\n    }\n\n    const { dirname } = require(\"node:path\");\n    const originalDir = dirname(entry.source);\n    const content = generatePatch(originalDir, patchedDir);\n    if (!content) throw new Error(\"No differences found.\");\n\n    const patchFile = join(this.patchDir, `${parsed.kind}-${parsed.name}.patch`);\n    savePatch(patchFile, content);\n    return patchFile;\n  }\n\n  /**\n   * Apply the committed patch file to the repository clone and open a contribution branch.\n   *\n   * Applies `.skaile/patches/<kind>-<name>.patch` to the repository clone, creates a\n   * `patch/<kind>-<name>` branch, and stages a commit — ready to push via `contribPush`.\n   *\n   * @param ref - Asset ref in `kind:name` form.\n   * @throws When the asset is not found, has no repository, or the patch file is missing.\n   */\n  patchSubmit(ref: string): void {\n    const parsed = parseAssetRef(ref);\n    const entry = this.info(ref);\n    if (!entry?.repository) throw new Error(`Asset not found or no repository: ${ref}`);\n\n    const { repositories } = this.loadConfig();\n    const decl = repositories[entry.repository];\n    if (!decl?.url) throw new Error(\"Can only submit patches for remote repositories.\");\n\n    const repoDir = join(this.reposDir, entry.repository);\n    const branchName = `patch/${parsed.kind}-${parsed.name}`;\n\n    // Apply patch to repo clone\n    const patchFile = join(this.patchDir, `${parsed.kind}-${parsed.name}.patch`);\n    if (!existsSync(patchFile)) throw new Error(\"No patch file. Run `skaile patch-commit` first.\");\n\n    coreApplyPatch(repoDir, patchFile);\n    commitChanges(repoDir, `fix: improve ${parsed.kind} ${parsed.name}`, branchName);\n  }\n\n  /**\n   * Delete the patch working directory and patch file for an asset.\n   *\n   * @param ref - Asset ref in `kind:name` form.\n   */\n  patchRemove(ref: string): void {\n    const parsed = parseAssetRef(ref);\n    const patchFile = join(this.patchDir, `${parsed.kind}-${parsed.name}.patch`);\n    const patchedDir = join(this.patchDir, `${parsed.kind}-${parsed.name}`);\n    const { rmSync } = require(\"node:fs\");\n    try {\n      rmSync(patchFile);\n    } catch {}\n    try {\n      rmSync(patchedDir, { recursive: true });\n    } catch {}\n  }\n\n  // ── Doctor ─────────────────────────────────────────────────────────────\n\n  /**\n   * Scan deployed assets for unsatisfied transitive dependencies.\n   *\n   * For each deployed asset, checks that all entries in its `requires` list are\n   * also deployed. Returns a list of issues with a flag indicating whether the\n   * missing dependency can be resolved from a configured repository.\n   *\n   * @returns Array of {@link DepIssue} objects. An empty array means the workspace is healthy.\n   */\n  doctor(): DepIssue[] {\n    const { repositories } = this.loadConfig();\n    const deployed = this.listDeployed();\n    const issues: DepIssue[] = [];\n\n    for (const entry of deployed) {\n      const full = this.info(`${entry.kind}:${entry.name}`);\n      if (!full) continue;\n      for (const req of full.requires) {\n        if (\n          !isDeployed(\n            req.kind as AiComponent,\n            req.name,\n            this.driverTarget,\n            this.global,\n            this.projectDir,\n          )\n        ) {\n          const inRepos =\n            resolveAsset({ kind: req.kind, name: req.name }, repositories, this.reposDir) !== null;\n          issues.push({\n            assetKind: entry.kind,\n            assetName: entry.name,\n            depKind: req.kind,\n            depName: req.name,\n            inRepos,\n          });\n        }\n      }\n    }\n    return issues;\n  }\n\n  // ── Scaffold ───────────────────────────────────────────────────────────\n\n  /**\n   * Create a minimal asset scaffold directory (delegates to {@link createScaffold}).\n   *\n   * @param name - Asset name (also used as the directory name).\n   * @param kind - Asset kind: `skill` | `agent` | `bundle` | `flow` | `prompt` | `contract`.\n   * @param destDir - Parent directory to create the asset in.\n   * @returns `{ ok: true, path }` on success, `{ ok: false, path: errorMessage }` if the\n   *   directory already exists.\n   */\n  create(name: string, kind: string, destDir: string): { ok: boolean; path: string } {\n    return createScaffold(name, kind, destDir);\n  }\n\n  // ── Contrib (REMOVED 2026-05-12) ───────────────────────────────────────\n  //\n  // The `contribChanges / contribDiff / contribCommit / contribPush /\n  // contribCompare` methods were retired alongside `skaile repo contrib *`.\n  // The refinement push-back workflow is being re-introduced in Phase 4 as\n  // `skaile publish` + `skaile preset push` against the Library Source model.\n\n  // ── History ────────────────────────────────────────────────────────────\n\n  /**\n   * Return recent asset action history entries, newest first.\n   *\n   * @param limit - Maximum number of entries to return. Defaults to `20`.\n   * @returns Array of {@link HistoryEntry} objects in reverse-chronological order.\n   */\n  history(limit = 20): HistoryEntry[] {\n    return getRecentHistory(this.projectDir, limit);\n  }\n\n  /**\n   * Erase all asset action history for this workspace.\n   */\n  clearHistory(): void {\n    clearHistory(this.projectDir);\n  }\n\n  // ── Clean ───────────────────────────────────────────────────────────────\n\n  /**\n   * Remove deployed assets tracked by the lock file and report unmanaged ones.\n   *\n   * With `opts.all`, also deletes `.skaile/history.yaml`, `.skaile/patches/`,\n   * `.skaile/repos/`, and `skaile.lock.yaml` — effectively resetting the workspace\n   * to a pre-install state.\n   *\n   * @param opts - Optional cleanup options.\n   * @param opts.all - When `true`, remove all Skaile-managed state in addition to deployed assets.\n   * @returns Object with `removed` (successfully cleaned refs), `skipped` (with reasons),\n   *   and `unmanaged` (deployed assets not in the lock file).\n   */\n  clean(opts?: { all?: boolean }): {\n    removed: string[];\n    skipped: Array<{ ref: string; reason: string }>;\n    unmanaged: string[];\n  } {\n    const lock = readLock(this.lockPath);\n    const removed: string[] = [];\n    const skipped: Array<{ ref: string; reason: string }> = [];\n\n    if (lock) {\n      for (const ref of Object.keys(lock.assets)) {\n        const [kind, name] = ref.split(\":\") as [string, string];\n        const dest = deployedDir(\n          kind as AiComponent,\n          name,\n          this.driverTarget,\n          this.global,\n          this.projectDir,\n        );\n\n        try {\n          const stat = lstatSync(dest);\n          if (stat.isSymbolicLink()) unlinkSync(dest);\n          else rmSync(dest, { recursive: true, force: true });\n          removed.push(ref);\n        } catch {\n          // Already gone — count as removed\n          removed.push(ref);\n        }\n      }\n    }\n\n    // Collect unmanaged assets for reporting\n    const lockRefs = lock ? new Set(Object.keys(lock.assets)) : new Set<string>();\n    const unmanaged: string[] = [];\n    const allDeployed = this.listDeployed();\n    for (const d of allDeployed) {\n      const ref = `${d.kind}:${d.name}`;\n      if (!lockRefs.has(ref)) {\n        unmanaged.push(ref);\n      }\n    }\n\n    if (opts?.all) {\n      // Delete history file\n      const historyFile = join(this.projectDir, \".skaile\", \"history.yaml\");\n      try {\n        unlinkSync(historyFile);\n      } catch {}\n\n      // Remove patches dir\n      try {\n        rmSync(this.patchDir, { recursive: true, force: true });\n      } catch {}\n\n      // Remove repos dir\n      try {\n        rmSync(this.reposDir, { recursive: true, force: true });\n      } catch {}\n\n      // Remove lock file\n      try {\n        unlinkSync(this.lockPath);\n      } catch {}\n    }\n\n    return { removed, skipped, unmanaged };\n  }\n\n  // ── Helpers ────────────────────────────────────────────────────────────\n\n  /** Add a dependency ref to skaile.yaml if not already present. */\n  private addDependencyToConfig(ref: string): void {\n    if (this.global) return; // global installs don't modify skaile.yaml\n    const configPath = join(this.projectDir, \"skaile.yaml\");\n    if (!existsSync(configPath)) return;\n    const { parse, stringify } = require(\"yaml\");\n    const raw = parse(readFileSync(configPath, \"utf8\")) ?? {};\n    if (!raw.dependencies) raw.dependencies = [];\n    if (!raw.dependencies.includes(ref)) {\n      raw.dependencies.push(ref);\n      require(\"node:fs\").writeFileSync(configPath, stringify(raw, { lineWidth: 120 }));\n    }\n  }\n\n  /** Remove a dependency ref from skaile.yaml. */\n  private removeDependencyFromConfig(ref: string): void {\n    if (this.global) return;\n    const configPath = join(this.projectDir, \"skaile.yaml\");\n    if (!existsSync(configPath)) return;\n    const { parse, stringify } = require(\"yaml\");\n    const raw = parse(readFileSync(configPath, \"utf8\")) ?? {};\n    if (!raw.dependencies) return;\n    const idx = raw.dependencies.indexOf(ref);\n    if (idx !== -1) {\n      raw.dependencies.splice(idx, 1);\n      require(\"node:fs\").writeFileSync(configPath, stringify(raw, { lineWidth: 120 }));\n    }\n  }\n\n  private resolveRepoDir(decl: RepositoryDeclaration, name: string): string | null {\n    // Check links first\n    const links = readLinks(this.projectDir);\n    if (links[name]) {\n      return existsSync(links[name]) ? links[name] : null;\n    }\n\n    if (decl.path) {\n      const resolved = resolve(this.projectDir, decl.path);\n      return existsSync(resolved) ? resolved : null;\n    }\n\n    // Check project-local symlink, then global cache\n    const dest = join(this.reposDir, name);\n    if (existsSync(dest)) return dest;\n\n    const globalDest = join(getGlobalCacheDir(), name);\n    if (existsSync(join(globalDest, \".git\"))) return globalDest;\n\n    return null;\n  }\n}\n\n// ── Scaffold (merged from @skaile/agent-workspace) ────────────────────────\n\nexport { scaffoldWorkspace, listTemplates, setTemplatesDir } from \"./scaffold/index.js\";\nexport type { ScaffoldOptions, ScaffoldResult, TemplateManifest } from \"./scaffold/index.js\";\n\n// ── Renderers ─────────────────────────────────────────────────────────────\n\nexport {\n  AGENT_RENDERERS,\n  claudeCodeRenderer,\n  codexRenderer,\n  driverTargetSupportsAgents,\n  ompRenderer,\n} from \"./renderers.js\";\nexport type { AgentRenderer, AgentRenderInput, AgentRenderResult } from \"./renderers.js\";\n\n// ── Fragments ─────────────────────────────────────────────────────────────\n\nexport type {\n  AbilityRef,\n  ConnectorRef,\n  ContractRef,\n  FragmentContext,\n  FragmentId,\n} from \"./fragments.js\";\nexport { BUILT_IN_FRAGMENTS, resolveFragments, loadPromptExtensions } from \"./fragments.js\";\n"]}