@sjcrh/proteinpaint-types 2.98.2-1 → 2.99.0

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@sjcrh/proteinpaint-types",
-  "version": "2.98.2-1",
+  "version": "2.99.0",
   "type": "module",
   "description": "Shared type definitions between ProteinPaint server and client code",
   "main": "src/index.ts",

package/src/dataset.ts

@@ -567,10 +567,9 @@ export type GeneExpressionQuery = GeneExpressionQueryGdc | GeneExpressionQueryNa
 
 export type SingleCellGeneExpressionNative = {
 	src: 'native'
-	/** path to R rds or HDF5 files, each is a gene-by-cell matrix for a sample, with ".rdx" suffix. missing files are detected and handled */
+	/** path to HDF5 files. for now only hdf5 is supported.
+	each is a gene-by-cell matrix for a sample, with ".h5" suffix. missing files are detected and handled */
 	folder: string
-	/** HDF5 or RDS file, will deprecate RDS file later */
-	storage_type: 'HDF5' | 'RDS'
 	/** dynamically added getter */
 	get?: (q: any) => any
 	/** cached gene exp bins */
@@ -1012,6 +1011,8 @@ type MatrixSettings = {
 	 * tb.filter?.values[0]?.dt === 4).isOrdered */
 	sortByCNV?: boolean
 	cnvUnit?: 'log2ratio' | 'segmedian'
+	/** whether to show white cell border for SNVindel in oncoPrint mode */
+	oncoPrintSNVindelCellBorder?: boolean
 }
 
 type NumericDictTermClusterSettings = {