@sjcrh/proteinpaint-types 2.96.0 → 2.96.2-0

package/dist/{chunk-6LFMFM2C.js → chunk-Z2WFGV6V.js}

@@ -22,7 +22,7 @@ var diffExpPayload = {
 var validDERequest = (input) => {
   const errors = [];
   const __is = (input2) => {
-    const $io0 = (input3) => "string" === typeof input3.genome && "string" === typeof input3.dslabel && true && "number" === typeof input3.min_count && "number" === typeof input3.min_total_count && ("text" === input3.storage_type || "HDF5" === input3.storage_type) && (void 0 === input3.method || "string" === typeof input3.method);
+    const $io0 = (input3) => "string" === typeof input3.genome && "string" === typeof input3.dslabel && true && "number" === typeof input3.min_count && "number" === typeof input3.min_total_count && ("text" === input3.storage_type || "HDF5" === input3.storage_type) && (void 0 === input3.method || "string" === typeof input3.method) && true;
     return "object" === typeof input2 && null !== input2 && $io0(input2);
   };
   if (false === __is(input)) {
@@ -52,7 +52,7 @@ var validDERequest = (input) => {
         path: _path2 + ".method",
         expected: "(string | undefined)",
         value: input3.method
-      })].every((flag) => flag);
+      }), true].every((flag) => flag);
       return ("object" === typeof input2 && null !== input2 || $report(true, {
         path: _path + "",
         expected: "DERequest",

package/dist/index.js

@@ -127,7 +127,7 @@ import {
   diffExpPayload,
   validDERequest,
   validDEResponse
-} from "./chunk-6LFMFM2C.js";
+} from "./chunk-Z2WFGV6V.js";
 import {
   boxplotPayload,
   validBoxPlotRequest,

package/dist/termdb.DE.js

@@ -2,7 +2,7 @@ import {
   diffExpPayload,
   validDERequest,
   validDEResponse
-} from "./chunk-6LFMFM2C.js";
+} from "./chunk-Z2WFGV6V.js";
 import "./chunk-Z6B6IQIY.js";
 export {
   diffExpPayload,

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@sjcrh/proteinpaint-types",
-  "version": "2.96.0",
+  "version": "2.96.2-0",
   "type": "module",
   "description": "Shared type definitions between ProteinPaint server and client code",
   "main": "src/index.ts",

package/src/dataset.ts

@@ -1291,9 +1291,6 @@ export type Cohort = {
 
 /** Customizations specific to the mass nav component */
 type MassNav = {
-	/** optional title of this ds, if missing use ds.label. shown on mass nav header.
-	 * use blank string to not to show a label*/
-	title?: Title
 	/** Customization for the tabs*/
 	tabs?: {
 		/** supported keys: about, charts, groups, filter

package/src/routes/termdb.DE.ts

@@ -15,6 +15,8 @@ export type DERequest = {
 	storage_type: 'text' | 'HDF5'
 	/** Method of DE used wilcoxon/edgeR */
 	method?: string
+	/** Term for confounding variable (if present) */
+	tw?: any
 }
 
 export type ExpressionInput = {
@@ -32,6 +34,10 @@ export type ExpressionInput = {
 	min_total_count: number
 	/** Type of storage file: HDF5 or text. Text will be deprecated in the future */
 	storage_type: 'HDF5' | 'text'
+	/** Confounding variable for DE analysis. Maybe array of string (Gender: Male/female) or number (Age). For now supporting 1 confounding variable. Later will add support for multiple confounding variables */
+	conf1?: any[]
+	/** Type of the confounding variable (categorical/float) */
+	conf1_type?: 'categorical' | 'float'
 }
 
 export type DEResponse = {