@sjcrh/proteinpaint-types 2.94.0 → 2.96.0

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Files changed (27) hide show
  1. package/dist/brainImaging.js +1 -1
  2. package/dist/{chunk-DKSPASWZ.js → chunk-6FUNF4LO.js} +10 -10
  3. package/dist/{chunk-M33KP65Z.js → chunk-7K726NBK.js} +5 -5
  4. package/dist/{chunk-DCN75URO.js → chunk-C3NI3SZV.js} +5 -5
  5. package/dist/{chunk-W3F2RMPU.js → chunk-CU5TLT6P.js} +10 -10
  6. package/dist/{chunk-Q56YNQFK.js → chunk-DBGYAS46.js} +5 -5
  7. package/dist/{chunk-JPW6LFDQ.js → chunk-IORCECK2.js} +5 -5
  8. package/dist/{chunk-JEQ3TBVQ.js → chunk-JDJZ35H6.js} +5 -5
  9. package/dist/{chunk-IT7IGDC4.js → chunk-MRCMGCVR.js} +5 -5
  10. package/dist/{chunk-BY2JABTF.js → chunk-RIJYASPK.js} +5 -1
  11. package/dist/{chunk-IWG5IPXG.js → chunk-SWWALBYP.js} +5 -5
  12. package/dist/{chunk-INDBFC54.js → chunk-WCMW6A75.js} +5 -5
  13. package/dist/index.js +11 -11
  14. package/dist/termdb.boxplot.js +1 -1
  15. package/dist/termdb.categories.js +1 -1
  16. package/dist/termdb.cluster.js +1 -1
  17. package/dist/termdb.descrstats.js +1 -1
  18. package/dist/termdb.numericcategories.js +1 -1
  19. package/dist/termdb.percentile.js +1 -1
  20. package/dist/termdb.termsbyids.js +1 -1
  21. package/dist/termdb.topTermsByType.js +1 -1
  22. package/dist/termdb.topVariablyExpressedGenes.js +1 -1
  23. package/dist/termdb.violin.js +1 -1
  24. package/package.json +1 -1
  25. package/src/dataset.ts +103 -19
  26. package/src/filter.ts +1 -1
  27. package/src/routes/termdb.boxplot.ts +3 -0
package/dist/brainImaging.js CHANGED
@@ -2,7 +2,7 @@ import {
2
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  brainImagingPayload,
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  validBrainImagingRequest,
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  validBrainImagingResponse
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- } from "./chunk-DCN75URO.js";
5
+ } from "./chunk-C3NI3SZV.js";
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  import "./chunk-Z6B6IQIY.js";
7
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  export {
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  brainImagingPayload,
package/dist/{chunk-DKSPASWZ.js → chunk-6FUNF4LO.js} RENAMED
@@ -67,7 +67,7 @@ var validTermdbClusterRequest = (input) => {
67
67
  const $io26 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "geneVariant" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $io6(input3.groupsetting)) && "gene" === input3.kind && "string" === typeof input3.gene && (void 0 === input3.chr || "string" === typeof input3.chr) && (void 0 === input3.start || "number" === typeof input3.start) && (void 0 === input3.stop || "number" === typeof input3.stop);
68
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  const $io27 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "geneVariant" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $io6(input3.groupsetting)) && "coord" === input3.kind && "string" === typeof input3.chr && "number" === typeof input3.start && "number" === typeof input3.stop;
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  const $io28 = (input3) => 1 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "M" === elem || "E" === elem || "F" === elem || "N" === elem || "S" === elem || "D" === elem || "I" === elem || "P" === elem || "L" === elem || "Intron" === elem || "Blank" === elem || "WT" === elem || "ITD" === elem || "DEL" === elem || "NLOSS" === elem || "CLOSS" === elem || "Utr3" === elem || "Utr5" === elem || "X" === elem || "noncoding" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "M" === elem || "E" === elem || "F" === elem || "N" === elem || "S" === elem || "D" === elem || "I" === elem || "P" === elem || "L" === elem || "Intron" === elem || "Blank" === elem || "WT" === elem || "ITD" === elem || "DEL" === elem || "NLOSS" === elem || "CLOSS" === elem || "Utr3" === elem || "Utr5" === elem || "X" === elem || "noncoding" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
70
- const $io29 = (input3) => 4 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
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+ const $io29 = (input3) => 4 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
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  const $io30 = (input3) => 5 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "SV" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "SV" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
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  const $io31 = (input3) => 2 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "Fuserna" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "Fuserna" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
73
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  const $io32 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && ("integer" === input3.type || "float" === input3.type || "geneExpression" === input3.type || "metaboliteIntensity" === input3.type) && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && ("object" === typeof input3.bins && null !== input3.bins && $io14(input3.bins)) && (void 0 === input3.unit || "string" === typeof input3.unit) && "string" === typeof input3.gene && (void 0 === input3.chr || "string" === typeof input3.chr) && (void 0 === input3.start || "number" === typeof input3.start) && (void 0 === input3.stop || "number" === typeof input3.stop);
@@ -1250,9 +1250,9 @@ var validTermdbClusterRequest = (input) => {
1250
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  path: _path2 + ".mclassLst",
1251
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  expected: "Array<CNVClasses>",
1252
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  value: input3.mclassLst
1253
- })) && input3.mclassLst.map((elem, _index24) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem || $report(_exceptionable2, {
1253
+ })) && input3.mclassLst.map((elem, _index24) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem || $report(_exceptionable2, {
1254
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  path: _path2 + ".mclassLst[" + _index24 + "]",
1255
- expected: '("Blank" | "CNV_amp" | "CNV_loh" | "CNV_losss" | "WT")',
1255
+ expected: '("Blank" | "CNV_amp" | "CNV_amplification" | "CNV_homozygous_deletion" | "CNV_loh" | "CNV_loss" | "WT")',
1256
1256
  value: elem
1257
1257
  })).every((flag) => flag) || $report(_exceptionable2, {
1258
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  path: _path2 + ".mclassLst",
@@ -1262,9 +1262,9 @@ var validTermdbClusterRequest = (input) => {
1262
1262
  path: _path2 + ".mclassExcludeLst",
1263
1263
  expected: "Array<CNVClasses>",
1264
1264
  value: input3.mclassExcludeLst
1265
- })) && input3.mclassExcludeLst.map((elem, _index25) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem || $report(_exceptionable2, {
1265
+ })) && input3.mclassExcludeLst.map((elem, _index25) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem || $report(_exceptionable2, {
1266
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  path: _path2 + ".mclassExcludeLst[" + _index25 + "]",
1267
- expected: '("Blank" | "CNV_amp" | "CNV_loh" | "CNV_losss" | "WT")',
1267
+ expected: '("Blank" | "CNV_amp" | "CNV_amplification" | "CNV_homozygous_deletion" | "CNV_loh" | "CNV_loss" | "WT")',
1268
1268
  value: elem
1269
1269
  })).every((flag) => flag) || $report(_exceptionable2, {
1270
1270
  path: _path2 + ".mclassExcludeLst",
@@ -1839,7 +1839,7 @@ var validTermdbClusterResponse = (input) => {
1839
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  const $io36 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "geneVariant" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io11(input3.values)) && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $io16(input3.groupsetting)) && "gene" === input3.kind && "string" === typeof input3.gene && (void 0 === input3.chr || "string" === typeof input3.chr) && (void 0 === input3.start || "number" === typeof input3.start) && (void 0 === input3.stop || "number" === typeof input3.stop);
1840
1840
  const $io37 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "geneVariant" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io11(input3.values)) && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $io16(input3.groupsetting)) && "coord" === input3.kind && "string" === typeof input3.chr && "number" === typeof input3.start && "number" === typeof input3.stop;
1841
1841
  const $io38 = (input3) => 1 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "M" === elem || "E" === elem || "F" === elem || "N" === elem || "S" === elem || "D" === elem || "I" === elem || "P" === elem || "L" === elem || "Intron" === elem || "Blank" === elem || "WT" === elem || "ITD" === elem || "DEL" === elem || "NLOSS" === elem || "CLOSS" === elem || "Utr3" === elem || "Utr5" === elem || "X" === elem || "noncoding" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "M" === elem || "E" === elem || "F" === elem || "N" === elem || "S" === elem || "D" === elem || "I" === elem || "P" === elem || "L" === elem || "Intron" === elem || "Blank" === elem || "WT" === elem || "ITD" === elem || "DEL" === elem || "NLOSS" === elem || "CLOSS" === elem || "Utr3" === elem || "Utr5" === elem || "X" === elem || "noncoding" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
1842
- const $io39 = (input3) => 4 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
1842
+ const $io39 = (input3) => 4 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
1843
1843
  const $io40 = (input3) => 5 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "SV" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "SV" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
1844
1844
  const $io41 = (input3) => 2 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "Fuserna" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "Fuserna" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
1845
1845
  const $io42 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && ("integer" === input3.type || "float" === input3.type || "geneExpression" === input3.type || "metaboliteIntensity" === input3.type) && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io11(input3.values)) && ("object" === typeof input3.bins && null !== input3.bins && $io24(input3.bins)) && (void 0 === input3.unit || "string" === typeof input3.unit);
@@ -3245,9 +3245,9 @@ var validTermdbClusterResponse = (input) => {
3245
3245
  path: _path2 + ".mclassLst",
3246
3246
  expected: "Array<CNVClasses>",
3247
3247
  value: input3.mclassLst
3248
- })) && input3.mclassLst.map((elem, _index31) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem || $report(_exceptionable2, {
3248
+ })) && input3.mclassLst.map((elem, _index31) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem || $report(_exceptionable2, {
3249
3249
  path: _path2 + ".mclassLst[" + _index31 + "]",
3250
- expected: '("Blank" | "CNV_amp" | "CNV_loh" | "CNV_losss" | "WT")',
3250
+ expected: '("Blank" | "CNV_amp" | "CNV_amplification" | "CNV_homozygous_deletion" | "CNV_loh" | "CNV_loss" | "WT")',
3251
3251
  value: elem
3252
3252
  })).every((flag) => flag) || $report(_exceptionable2, {
3253
3253
  path: _path2 + ".mclassLst",
@@ -3257,9 +3257,9 @@ var validTermdbClusterResponse = (input) => {
3257
3257
  path: _path2 + ".mclassExcludeLst",
3258
3258
  expected: "Array<CNVClasses>",
3259
3259
  value: input3.mclassExcludeLst
3260
- })) && input3.mclassExcludeLst.map((elem, _index32) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem || $report(_exceptionable2, {
3260
+ })) && input3.mclassExcludeLst.map((elem, _index32) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem || $report(_exceptionable2, {
3261
3261
  path: _path2 + ".mclassExcludeLst[" + _index32 + "]",
3262
- expected: '("Blank" | "CNV_amp" | "CNV_loh" | "CNV_losss" | "WT")',
3262
+ expected: '("Blank" | "CNV_amp" | "CNV_amplification" | "CNV_homozygous_deletion" | "CNV_loh" | "CNV_loss" | "WT")',
3263
3263
  value: elem
3264
3264
  })).every((flag) => flag) || $report(_exceptionable2, {
3265
3265
  path: _path2 + ".mclassExcludeLst",
package/dist/{chunk-M33KP65Z.js → chunk-7K726NBK.js} RENAMED
@@ -140,7 +140,7 @@ var validTermsByIdsResponse = (input) => {
140
140
  const $io33 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "geneVariant" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io15(input3.values)) && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $io17(input3.groupsetting)) && "gene" === input3.kind && "string" === typeof input3.gene && (void 0 === input3.chr || "string" === typeof input3.chr) && (void 0 === input3.start || "number" === typeof input3.start) && (void 0 === input3.stop || "number" === typeof input3.stop);
141
141
  const $io34 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "geneVariant" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io15(input3.values)) && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $io17(input3.groupsetting)) && "coord" === input3.kind && "string" === typeof input3.chr && "number" === typeof input3.start && "number" === typeof input3.stop;
142
142
  const $io35 = (input3) => 1 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "M" === elem || "E" === elem || "F" === elem || "N" === elem || "S" === elem || "D" === elem || "I" === elem || "P" === elem || "L" === elem || "Intron" === elem || "Blank" === elem || "WT" === elem || "ITD" === elem || "DEL" === elem || "NLOSS" === elem || "CLOSS" === elem || "Utr3" === elem || "Utr5" === elem || "X" === elem || "noncoding" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "M" === elem || "E" === elem || "F" === elem || "N" === elem || "S" === elem || "D" === elem || "I" === elem || "P" === elem || "L" === elem || "Intron" === elem || "Blank" === elem || "WT" === elem || "ITD" === elem || "DEL" === elem || "NLOSS" === elem || "CLOSS" === elem || "Utr3" === elem || "Utr5" === elem || "X" === elem || "noncoding" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
143
- const $io36 = (input3) => 4 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
143
+ const $io36 = (input3) => 4 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
144
144
  const $io37 = (input3) => 5 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "SV" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "SV" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
145
145
  const $io38 = (input3) => 2 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "Fuserna" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "Fuserna" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
146
146
  const $io39 = (input3) => (void 0 === input3.id || "string" === typeof input3.id) && (void 0 === input3.$id || "string" === typeof input3.$id) && (void 0 === input3.isAtomic || true === input3.isAtomic) && true && (void 0 === input3.settings || "object" === typeof input3.settings && null !== input3.settings && false === Array.isArray(input3.settings) && $io3(input3.settings)) && true && (void 0 === input3.minNumSamples || "number" === typeof input3.minNumSamples) && true && ("object" === typeof input3.term && null !== input3.term && $io21(input3.term)) && ("object" === typeof input3.q && null !== input3.q && $iu11(input3.q));
@@ -1609,9 +1609,9 @@ var validTermsByIdsResponse = (input) => {
1609
1609
  path: _path2 + ".mclassLst",
1610
1610
  expected: "Array<CNVClasses>",
1611
1611
  value: input3.mclassLst
1612
- })) && input3.mclassLst.map((elem, _index24) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem || $report(_exceptionable2, {
1612
+ })) && input3.mclassLst.map((elem, _index24) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem || $report(_exceptionable2, {
1613
1613
  path: _path2 + ".mclassLst[" + _index24 + "]",
1614
- expected: '("Blank" | "CNV_amp" | "CNV_loh" | "CNV_losss" | "WT")',
1614
+ expected: '("Blank" | "CNV_amp" | "CNV_amplification" | "CNV_homozygous_deletion" | "CNV_loh" | "CNV_loss" | "WT")',
1615
1615
  value: elem
1616
1616
  })).every((flag) => flag) || $report(_exceptionable2, {
1617
1617
  path: _path2 + ".mclassLst",
@@ -1621,9 +1621,9 @@ var validTermsByIdsResponse = (input) => {
1621
1621
  path: _path2 + ".mclassExcludeLst",
1622
1622
  expected: "Array<CNVClasses>",
1623
1623
  value: input3.mclassExcludeLst
1624
- })) && input3.mclassExcludeLst.map((elem, _index25) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem || $report(_exceptionable2, {
1624
+ })) && input3.mclassExcludeLst.map((elem, _index25) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem || $report(_exceptionable2, {
1625
1625
  path: _path2 + ".mclassExcludeLst[" + _index25 + "]",
1626
- expected: '("Blank" | "CNV_amp" | "CNV_loh" | "CNV_losss" | "WT")',
1626
+ expected: '("Blank" | "CNV_amp" | "CNV_amplification" | "CNV_homozygous_deletion" | "CNV_loh" | "CNV_loss" | "WT")',
1627
1627
  value: elem
1628
1628
  })).every((flag) => flag) || $report(_exceptionable2, {
1629
1629
  path: _path2 + ".mclassExcludeLst",
package/dist/{chunk-DCN75URO.js → chunk-C3NI3SZV.js} RENAMED
@@ -79,7 +79,7 @@ var validBrainImagingRequest = (input) => {
79
79
  const $io32 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "geneVariant" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io14(input3.values)) && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $io16(input3.groupsetting)) && "gene" === input3.kind && "string" === typeof input3.gene && (void 0 === input3.chr || "string" === typeof input3.chr) && (void 0 === input3.start || "number" === typeof input3.start) && (void 0 === input3.stop || "number" === typeof input3.stop);
80
80
  const $io33 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "geneVariant" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io14(input3.values)) && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $io16(input3.groupsetting)) && "coord" === input3.kind && "string" === typeof input3.chr && "number" === typeof input3.start && "number" === typeof input3.stop;
81
81
  const $io34 = (input3) => 1 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "M" === elem || "E" === elem || "F" === elem || "N" === elem || "S" === elem || "D" === elem || "I" === elem || "P" === elem || "L" === elem || "Intron" === elem || "Blank" === elem || "WT" === elem || "ITD" === elem || "DEL" === elem || "NLOSS" === elem || "CLOSS" === elem || "Utr3" === elem || "Utr5" === elem || "X" === elem || "noncoding" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "M" === elem || "E" === elem || "F" === elem || "N" === elem || "S" === elem || "D" === elem || "I" === elem || "P" === elem || "L" === elem || "Intron" === elem || "Blank" === elem || "WT" === elem || "ITD" === elem || "DEL" === elem || "NLOSS" === elem || "CLOSS" === elem || "Utr3" === elem || "Utr5" === elem || "X" === elem || "noncoding" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
82
- const $io35 = (input3) => 4 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
82
+ const $io35 = (input3) => 4 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
83
83
  const $io36 = (input3) => 5 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "SV" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "SV" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
84
84
  const $io37 = (input3) => 2 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "Fuserna" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "Fuserna" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
85
85
  const $iu0 = (input3) => (() => {
@@ -1442,9 +1442,9 @@ var validBrainImagingRequest = (input) => {
1442
1442
  path: _path2 + ".mclassLst",
1443
1443
  expected: "Array<CNVClasses>",
1444
1444
  value: input3.mclassLst
1445
- })) && input3.mclassLst.map((elem, _index26) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem || $report(_exceptionable2, {
1445
+ })) && input3.mclassLst.map((elem, _index26) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem || $report(_exceptionable2, {
1446
1446
  path: _path2 + ".mclassLst[" + _index26 + "]",
1447
- expected: '("Blank" | "CNV_amp" | "CNV_loh" | "CNV_losss" | "WT")',
1447
+ expected: '("Blank" | "CNV_amp" | "CNV_amplification" | "CNV_homozygous_deletion" | "CNV_loh" | "CNV_loss" | "WT")',
1448
1448
  value: elem
1449
1449
  })).every((flag) => flag) || $report(_exceptionable2, {
1450
1450
  path: _path2 + ".mclassLst",
@@ -1454,9 +1454,9 @@ var validBrainImagingRequest = (input) => {
1454
1454
  path: _path2 + ".mclassExcludeLst",
1455
1455
  expected: "Array<CNVClasses>",
1456
1456
  value: input3.mclassExcludeLst
1457
- })) && input3.mclassExcludeLst.map((elem, _index27) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem || $report(_exceptionable2, {
1457
+ })) && input3.mclassExcludeLst.map((elem, _index27) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem || $report(_exceptionable2, {
1458
1458
  path: _path2 + ".mclassExcludeLst[" + _index27 + "]",
1459
- expected: '("Blank" | "CNV_amp" | "CNV_loh" | "CNV_losss" | "WT")',
1459
+ expected: '("Blank" | "CNV_amp" | "CNV_amplification" | "CNV_homozygous_deletion" | "CNV_loh" | "CNV_loss" | "WT")',
1460
1460
  value: elem
1461
1461
  })).every((flag) => flag) || $report(_exceptionable2, {
1462
1462
  path: _path2 + ".mclassExcludeLst",
package/dist/{chunk-W3F2RMPU.js → chunk-CU5TLT6P.js} RENAMED
@@ -67,7 +67,7 @@ var validTermdbTopTermsByTypeRequest = (input) => {
67
67
  const $io26 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "geneVariant" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $io6(input3.groupsetting)) && "gene" === input3.kind && "string" === typeof input3.gene && (void 0 === input3.chr || "string" === typeof input3.chr) && (void 0 === input3.start || "number" === typeof input3.start) && (void 0 === input3.stop || "number" === typeof input3.stop);
68
68
  const $io27 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "geneVariant" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $io6(input3.groupsetting)) && "coord" === input3.kind && "string" === typeof input3.chr && "number" === typeof input3.start && "number" === typeof input3.stop;
69
69
  const $io28 = (input3) => 1 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "M" === elem || "E" === elem || "F" === elem || "N" === elem || "S" === elem || "D" === elem || "I" === elem || "P" === elem || "L" === elem || "Intron" === elem || "Blank" === elem || "WT" === elem || "ITD" === elem || "DEL" === elem || "NLOSS" === elem || "CLOSS" === elem || "Utr3" === elem || "Utr5" === elem || "X" === elem || "noncoding" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "M" === elem || "E" === elem || "F" === elem || "N" === elem || "S" === elem || "D" === elem || "I" === elem || "P" === elem || "L" === elem || "Intron" === elem || "Blank" === elem || "WT" === elem || "ITD" === elem || "DEL" === elem || "NLOSS" === elem || "CLOSS" === elem || "Utr3" === elem || "Utr5" === elem || "X" === elem || "noncoding" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
70
- const $io29 = (input3) => 4 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
70
+ const $io29 = (input3) => 4 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
71
71
  const $io30 = (input3) => 5 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "SV" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "SV" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
72
72
  const $io31 = (input3) => 2 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "Fuserna" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "Fuserna" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
73
73
  const $iu0 = (input3) => (() => {
@@ -1208,9 +1208,9 @@ var validTermdbTopTermsByTypeRequest = (input) => {
1208
1208
  path: _path2 + ".mclassLst",
1209
1209
  expected: "Array<CNVClasses>",
1210
1210
  value: input3.mclassLst
1211
- })) && input3.mclassLst.map((elem, _index23) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem || $report(_exceptionable2, {
1211
+ })) && input3.mclassLst.map((elem, _index23) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem || $report(_exceptionable2, {
1212
1212
  path: _path2 + ".mclassLst[" + _index23 + "]",
1213
- expected: '("Blank" | "CNV_amp" | "CNV_loh" | "CNV_losss" | "WT")',
1213
+ expected: '("Blank" | "CNV_amp" | "CNV_amplification" | "CNV_homozygous_deletion" | "CNV_loh" | "CNV_loss" | "WT")',
1214
1214
  value: elem
1215
1215
  })).every((flag) => flag) || $report(_exceptionable2, {
1216
1216
  path: _path2 + ".mclassLst",
@@ -1220,9 +1220,9 @@ var validTermdbTopTermsByTypeRequest = (input) => {
1220
1220
  path: _path2 + ".mclassExcludeLst",
1221
1221
  expected: "Array<CNVClasses>",
1222
1222
  value: input3.mclassExcludeLst
1223
- })) && input3.mclassExcludeLst.map((elem, _index24) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem || $report(_exceptionable2, {
1223
+ })) && input3.mclassExcludeLst.map((elem, _index24) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem || $report(_exceptionable2, {
1224
1224
  path: _path2 + ".mclassExcludeLst[" + _index24 + "]",
1225
- expected: '("Blank" | "CNV_amp" | "CNV_loh" | "CNV_losss" | "WT")',
1225
+ expected: '("Blank" | "CNV_amp" | "CNV_amplification" | "CNV_homozygous_deletion" | "CNV_loh" | "CNV_loss" | "WT")',
1226
1226
  value: elem
1227
1227
  })).every((flag) => flag) || $report(_exceptionable2, {
1228
1228
  path: _path2 + ".mclassExcludeLst",
@@ -1456,7 +1456,7 @@ var validTermdbTopTermsByTypeResponse = (input) => {
1456
1456
  const $io27 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "geneVariant" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io2(input3.values)) && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $io7(input3.groupsetting)) && "gene" === input3.kind && "string" === typeof input3.gene && (void 0 === input3.chr || "string" === typeof input3.chr) && (void 0 === input3.start || "number" === typeof input3.start) && (void 0 === input3.stop || "number" === typeof input3.stop);
1457
1457
  const $io28 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "geneVariant" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io2(input3.values)) && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $io7(input3.groupsetting)) && "coord" === input3.kind && "string" === typeof input3.chr && "number" === typeof input3.start && "number" === typeof input3.stop;
1458
1458
  const $io29 = (input3) => 1 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "M" === elem || "E" === elem || "F" === elem || "N" === elem || "S" === elem || "D" === elem || "I" === elem || "P" === elem || "L" === elem || "Intron" === elem || "Blank" === elem || "WT" === elem || "ITD" === elem || "DEL" === elem || "NLOSS" === elem || "CLOSS" === elem || "Utr3" === elem || "Utr5" === elem || "X" === elem || "noncoding" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "M" === elem || "E" === elem || "F" === elem || "N" === elem || "S" === elem || "D" === elem || "I" === elem || "P" === elem || "L" === elem || "Intron" === elem || "Blank" === elem || "WT" === elem || "ITD" === elem || "DEL" === elem || "NLOSS" === elem || "CLOSS" === elem || "Utr3" === elem || "Utr5" === elem || "X" === elem || "noncoding" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
1459
- const $io30 = (input3) => 4 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
1459
+ const $io30 = (input3) => 4 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
1460
1460
  const $io31 = (input3) => 5 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "SV" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "SV" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
1461
1461
  const $io32 = (input3) => 2 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "Fuserna" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "Fuserna" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
1462
1462
  const $io33 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && ("integer" === input3.type || "float" === input3.type || "geneExpression" === input3.type || "metaboliteIntensity" === input3.type) && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io2(input3.values)) && ("object" === typeof input3.bins && null !== input3.bins && $io15(input3.bins)) && (void 0 === input3.unit || "string" === typeof input3.unit);
@@ -2694,9 +2694,9 @@ var validTermdbTopTermsByTypeResponse = (input) => {
2694
2694
  path: _path2 + ".mclassLst",
2695
2695
  expected: "Array<CNVClasses>",
2696
2696
  value: input3.mclassLst
2697
- })) && input3.mclassLst.map((elem, _index26) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem || $report(_exceptionable2, {
2697
+ })) && input3.mclassLst.map((elem, _index26) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem || $report(_exceptionable2, {
2698
2698
  path: _path2 + ".mclassLst[" + _index26 + "]",
2699
- expected: '("Blank" | "CNV_amp" | "CNV_loh" | "CNV_losss" | "WT")',
2699
+ expected: '("Blank" | "CNV_amp" | "CNV_amplification" | "CNV_homozygous_deletion" | "CNV_loh" | "CNV_loss" | "WT")',
2700
2700
  value: elem
2701
2701
  })).every((flag) => flag) || $report(_exceptionable2, {
2702
2702
  path: _path2 + ".mclassLst",
@@ -2706,9 +2706,9 @@ var validTermdbTopTermsByTypeResponse = (input) => {
2706
2706
  path: _path2 + ".mclassExcludeLst",
2707
2707
  expected: "Array<CNVClasses>",
2708
2708
  value: input3.mclassExcludeLst
2709
- })) && input3.mclassExcludeLst.map((elem, _index27) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem || $report(_exceptionable2, {
2709
+ })) && input3.mclassExcludeLst.map((elem, _index27) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem || $report(_exceptionable2, {
2710
2710
  path: _path2 + ".mclassExcludeLst[" + _index27 + "]",
2711
- expected: '("Blank" | "CNV_amp" | "CNV_loh" | "CNV_losss" | "WT")',
2711
+ expected: '("Blank" | "CNV_amp" | "CNV_amplification" | "CNV_homozygous_deletion" | "CNV_loh" | "CNV_loss" | "WT")',
2712
2712
  value: elem
2713
2713
  })).every((flag) => flag) || $report(_exceptionable2, {
2714
2714
  path: _path2 + ".mclassExcludeLst",
package/dist/{chunk-Q56YNQFK.js → chunk-DBGYAS46.js} RENAMED
@@ -116,7 +116,7 @@ var validDescrStatsRequest = (input) => {
116
116
  const $io32 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "geneVariant" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io14(input3.values)) && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $io16(input3.groupsetting)) && "gene" === input3.kind && "string" === typeof input3.gene && (void 0 === input3.chr || "string" === typeof input3.chr) && (void 0 === input3.start || "number" === typeof input3.start) && (void 0 === input3.stop || "number" === typeof input3.stop);
117
117
  const $io33 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "geneVariant" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io14(input3.values)) && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $io16(input3.groupsetting)) && "coord" === input3.kind && "string" === typeof input3.chr && "number" === typeof input3.start && "number" === typeof input3.stop;
118
118
  const $io34 = (input3) => 1 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "M" === elem || "E" === elem || "F" === elem || "N" === elem || "S" === elem || "D" === elem || "I" === elem || "P" === elem || "L" === elem || "Intron" === elem || "Blank" === elem || "WT" === elem || "ITD" === elem || "DEL" === elem || "NLOSS" === elem || "CLOSS" === elem || "Utr3" === elem || "Utr5" === elem || "X" === elem || "noncoding" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "M" === elem || "E" === elem || "F" === elem || "N" === elem || "S" === elem || "D" === elem || "I" === elem || "P" === elem || "L" === elem || "Intron" === elem || "Blank" === elem || "WT" === elem || "ITD" === elem || "DEL" === elem || "NLOSS" === elem || "CLOSS" === elem || "Utr3" === elem || "Utr5" === elem || "X" === elem || "noncoding" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
119
- const $io35 = (input3) => 4 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
119
+ const $io35 = (input3) => 4 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
120
120
  const $io36 = (input3) => 5 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "SV" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "SV" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
121
121
  const $io37 = (input3) => 2 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "Fuserna" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "Fuserna" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
122
122
  const $io38 = (input3) => (void 0 === input3.id || "string" === typeof input3.id) && (void 0 === input3.$id || "string" === typeof input3.$id) && (void 0 === input3.isAtomic || true === input3.isAtomic) && true && (void 0 === input3.settings || "object" === typeof input3.settings && null !== input3.settings && false === Array.isArray(input3.settings) && $io2(input3.settings)) && true && (void 0 === input3.minNumSamples || "number" === typeof input3.minNumSamples) && true && ("object" === typeof input3.term && null !== input3.term && $io20(input3.term)) && ("object" === typeof input3.q && null !== input3.q && $iu11(input3.q));
@@ -1593,9 +1593,9 @@ var validDescrStatsRequest = (input) => {
1593
1593
  path: _path2 + ".mclassLst",
1594
1594
  expected: "Array<CNVClasses>",
1595
1595
  value: input3.mclassLst
1596
- })) && input3.mclassLst.map((elem, _index24) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem || $report(_exceptionable2, {
1596
+ })) && input3.mclassLst.map((elem, _index24) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem || $report(_exceptionable2, {
1597
1597
  path: _path2 + ".mclassLst[" + _index24 + "]",
1598
- expected: '("Blank" | "CNV_amp" | "CNV_loh" | "CNV_losss" | "WT")',
1598
+ expected: '("Blank" | "CNV_amp" | "CNV_amplification" | "CNV_homozygous_deletion" | "CNV_loh" | "CNV_loss" | "WT")',
1599
1599
  value: elem
1600
1600
  })).every((flag) => flag) || $report(_exceptionable2, {
1601
1601
  path: _path2 + ".mclassLst",
@@ -1605,9 +1605,9 @@ var validDescrStatsRequest = (input) => {
1605
1605
  path: _path2 + ".mclassExcludeLst",
1606
1606
  expected: "Array<CNVClasses>",
1607
1607
  value: input3.mclassExcludeLst
1608
- })) && input3.mclassExcludeLst.map((elem, _index25) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem || $report(_exceptionable2, {
1608
+ })) && input3.mclassExcludeLst.map((elem, _index25) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem || $report(_exceptionable2, {
1609
1609
  path: _path2 + ".mclassExcludeLst[" + _index25 + "]",
1610
- expected: '("Blank" | "CNV_amp" | "CNV_loh" | "CNV_losss" | "WT")',
1610
+ expected: '("Blank" | "CNV_amp" | "CNV_amplification" | "CNV_homozygous_deletion" | "CNV_loh" | "CNV_loss" | "WT")',
1611
1611
  value: elem
1612
1612
  })).every((flag) => flag) || $report(_exceptionable2, {
1613
1613
  path: _path2 + ".mclassExcludeLst",
package/dist/{chunk-JPW6LFDQ.js → chunk-IORCECK2.js} RENAMED
@@ -104,7 +104,7 @@ var validPercentileRequest = (input) => {
104
104
  const $io26 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "geneVariant" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $io6(input3.groupsetting)) && "gene" === input3.kind && "string" === typeof input3.gene && (void 0 === input3.chr || "string" === typeof input3.chr) && (void 0 === input3.start || "number" === typeof input3.start) && (void 0 === input3.stop || "number" === typeof input3.stop);
105
105
  const $io27 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "geneVariant" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $io6(input3.groupsetting)) && "coord" === input3.kind && "string" === typeof input3.chr && "number" === typeof input3.start && "number" === typeof input3.stop;
106
106
  const $io28 = (input3) => 1 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "M" === elem || "E" === elem || "F" === elem || "N" === elem || "S" === elem || "D" === elem || "I" === elem || "P" === elem || "L" === elem || "Intron" === elem || "Blank" === elem || "WT" === elem || "ITD" === elem || "DEL" === elem || "NLOSS" === elem || "CLOSS" === elem || "Utr3" === elem || "Utr5" === elem || "X" === elem || "noncoding" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "M" === elem || "E" === elem || "F" === elem || "N" === elem || "S" === elem || "D" === elem || "I" === elem || "P" === elem || "L" === elem || "Intron" === elem || "Blank" === elem || "WT" === elem || "ITD" === elem || "DEL" === elem || "NLOSS" === elem || "CLOSS" === elem || "Utr3" === elem || "Utr5" === elem || "X" === elem || "noncoding" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
107
- const $io29 = (input3) => 4 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
107
+ const $io29 = (input3) => 4 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
108
108
  const $io30 = (input3) => 5 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "SV" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "SV" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
109
109
  const $io31 = (input3) => 2 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "Fuserna" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "Fuserna" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
110
110
  const $iu0 = (input3) => (() => {
@@ -1261,9 +1261,9 @@ var validPercentileRequest = (input) => {
1261
1261
  path: _path2 + ".mclassLst",
1262
1262
  expected: "Array<CNVClasses>",
1263
1263
  value: input3.mclassLst
1264
- })) && input3.mclassLst.map((elem, _index24) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem || $report(_exceptionable2, {
1264
+ })) && input3.mclassLst.map((elem, _index24) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem || $report(_exceptionable2, {
1265
1265
  path: _path2 + ".mclassLst[" + _index24 + "]",
1266
- expected: '("Blank" | "CNV_amp" | "CNV_loh" | "CNV_losss" | "WT")',
1266
+ expected: '("Blank" | "CNV_amp" | "CNV_amplification" | "CNV_homozygous_deletion" | "CNV_loh" | "CNV_loss" | "WT")',
1267
1267
  value: elem
1268
1268
  })).every((flag) => flag) || $report(_exceptionable2, {
1269
1269
  path: _path2 + ".mclassLst",
@@ -1273,9 +1273,9 @@ var validPercentileRequest = (input) => {
1273
1273
  path: _path2 + ".mclassExcludeLst",
1274
1274
  expected: "Array<CNVClasses>",
1275
1275
  value: input3.mclassExcludeLst
1276
- })) && input3.mclassExcludeLst.map((elem, _index25) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem || $report(_exceptionable2, {
1276
+ })) && input3.mclassExcludeLst.map((elem, _index25) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem || $report(_exceptionable2, {
1277
1277
  path: _path2 + ".mclassExcludeLst[" + _index25 + "]",
1278
- expected: '("Blank" | "CNV_amp" | "CNV_loh" | "CNV_losss" | "WT")',
1278
+ expected: '("Blank" | "CNV_amp" | "CNV_amplification" | "CNV_homozygous_deletion" | "CNV_loh" | "CNV_loss" | "WT")',
1279
1279
  value: elem
1280
1280
  })).every((flag) => flag) || $report(_exceptionable2, {
1281
1281
  path: _path2 + ".mclassExcludeLst",
package/dist/{chunk-JEQ3TBVQ.js → chunk-JDJZ35H6.js} RENAMED
@@ -67,7 +67,7 @@ var validNumericCategoriesRequest = (input) => {
67
67
  const $io26 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "geneVariant" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $io6(input3.groupsetting)) && "gene" === input3.kind && "string" === typeof input3.gene && (void 0 === input3.chr || "string" === typeof input3.chr) && (void 0 === input3.start || "number" === typeof input3.start) && (void 0 === input3.stop || "number" === typeof input3.stop);
68
68
  const $io27 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "geneVariant" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $io6(input3.groupsetting)) && "coord" === input3.kind && "string" === typeof input3.chr && "number" === typeof input3.start && "number" === typeof input3.stop;
69
69
  const $io28 = (input3) => 1 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "M" === elem || "E" === elem || "F" === elem || "N" === elem || "S" === elem || "D" === elem || "I" === elem || "P" === elem || "L" === elem || "Intron" === elem || "Blank" === elem || "WT" === elem || "ITD" === elem || "DEL" === elem || "NLOSS" === elem || "CLOSS" === elem || "Utr3" === elem || "Utr5" === elem || "X" === elem || "noncoding" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "M" === elem || "E" === elem || "F" === elem || "N" === elem || "S" === elem || "D" === elem || "I" === elem || "P" === elem || "L" === elem || "Intron" === elem || "Blank" === elem || "WT" === elem || "ITD" === elem || "DEL" === elem || "NLOSS" === elem || "CLOSS" === elem || "Utr3" === elem || "Utr5" === elem || "X" === elem || "noncoding" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
70
- const $io29 = (input3) => 4 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
70
+ const $io29 = (input3) => 4 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
71
71
  const $io30 = (input3) => 5 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "SV" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "SV" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
72
72
  const $io31 = (input3) => 2 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "Fuserna" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "Fuserna" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
73
73
  const $iu0 = (input3) => (() => {
@@ -1212,9 +1212,9 @@ var validNumericCategoriesRequest = (input) => {
1212
1212
  path: _path2 + ".mclassLst",
1213
1213
  expected: "Array<CNVClasses>",
1214
1214
  value: input3.mclassLst
1215
- })) && input3.mclassLst.map((elem, _index23) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem || $report(_exceptionable2, {
1215
+ })) && input3.mclassLst.map((elem, _index23) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem || $report(_exceptionable2, {
1216
1216
  path: _path2 + ".mclassLst[" + _index23 + "]",
1217
- expected: '("Blank" | "CNV_amp" | "CNV_loh" | "CNV_losss" | "WT")',
1217
+ expected: '("Blank" | "CNV_amp" | "CNV_amplification" | "CNV_homozygous_deletion" | "CNV_loh" | "CNV_loss" | "WT")',
1218
1218
  value: elem
1219
1219
  })).every((flag) => flag) || $report(_exceptionable2, {
1220
1220
  path: _path2 + ".mclassLst",
@@ -1224,9 +1224,9 @@ var validNumericCategoriesRequest = (input) => {
1224
1224
  path: _path2 + ".mclassExcludeLst",
1225
1225
  expected: "Array<CNVClasses>",
1226
1226
  value: input3.mclassExcludeLst
1227
- })) && input3.mclassExcludeLst.map((elem, _index24) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem || $report(_exceptionable2, {
1227
+ })) && input3.mclassExcludeLst.map((elem, _index24) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem || $report(_exceptionable2, {
1228
1228
  path: _path2 + ".mclassExcludeLst[" + _index24 + "]",
1229
- expected: '("Blank" | "CNV_amp" | "CNV_loh" | "CNV_losss" | "WT")',
1229
+ expected: '("Blank" | "CNV_amp" | "CNV_amplification" | "CNV_homozygous_deletion" | "CNV_loh" | "CNV_loss" | "WT")',
1230
1230
  value: elem
1231
1231
  })).every((flag) => flag) || $report(_exceptionable2, {
1232
1232
  path: _path2 + ".mclassExcludeLst",
package/dist/{chunk-IT7IGDC4.js → chunk-MRCMGCVR.js} RENAMED
@@ -104,7 +104,7 @@ var validViolinRequest = (input) => {
104
104
  const $io26 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "geneVariant" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $io6(input3.groupsetting)) && "gene" === input3.kind && "string" === typeof input3.gene && (void 0 === input3.chr || "string" === typeof input3.chr) && (void 0 === input3.start || "number" === typeof input3.start) && (void 0 === input3.stop || "number" === typeof input3.stop);
105
105
  const $io27 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "geneVariant" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $io6(input3.groupsetting)) && "coord" === input3.kind && "string" === typeof input3.chr && "number" === typeof input3.start && "number" === typeof input3.stop;
106
106
  const $io28 = (input3) => 1 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "M" === elem || "E" === elem || "F" === elem || "N" === elem || "S" === elem || "D" === elem || "I" === elem || "P" === elem || "L" === elem || "Intron" === elem || "Blank" === elem || "WT" === elem || "ITD" === elem || "DEL" === elem || "NLOSS" === elem || "CLOSS" === elem || "Utr3" === elem || "Utr5" === elem || "X" === elem || "noncoding" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "M" === elem || "E" === elem || "F" === elem || "N" === elem || "S" === elem || "D" === elem || "I" === elem || "P" === elem || "L" === elem || "Intron" === elem || "Blank" === elem || "WT" === elem || "ITD" === elem || "DEL" === elem || "NLOSS" === elem || "CLOSS" === elem || "Utr3" === elem || "Utr5" === elem || "X" === elem || "noncoding" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
107
- const $io29 = (input3) => 4 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
107
+ const $io29 = (input3) => 4 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
108
108
  const $io30 = (input3) => 5 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "SV" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "SV" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
109
109
  const $io31 = (input3) => 2 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "Fuserna" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "Fuserna" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
110
110
  const $iu0 = (input3) => (() => {
@@ -1285,9 +1285,9 @@ var validViolinRequest = (input) => {
1285
1285
  path: _path2 + ".mclassLst",
1286
1286
  expected: "Array<CNVClasses>",
1287
1287
  value: input3.mclassLst
1288
- })) && input3.mclassLst.map((elem, _index23) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem || $report(_exceptionable2, {
1288
+ })) && input3.mclassLst.map((elem, _index23) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem || $report(_exceptionable2, {
1289
1289
  path: _path2 + ".mclassLst[" + _index23 + "]",
1290
- expected: '("Blank" | "CNV_amp" | "CNV_loh" | "CNV_losss" | "WT")',
1290
+ expected: '("Blank" | "CNV_amp" | "CNV_amplification" | "CNV_homozygous_deletion" | "CNV_loh" | "CNV_loss" | "WT")',
1291
1291
  value: elem
1292
1292
  })).every((flag) => flag) || $report(_exceptionable2, {
1293
1293
  path: _path2 + ".mclassLst",
@@ -1297,9 +1297,9 @@ var validViolinRequest = (input) => {
1297
1297
  path: _path2 + ".mclassExcludeLst",
1298
1298
  expected: "Array<CNVClasses>",
1299
1299
  value: input3.mclassExcludeLst
1300
- })) && input3.mclassExcludeLst.map((elem, _index24) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem || $report(_exceptionable2, {
1300
+ })) && input3.mclassExcludeLst.map((elem, _index24) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem || $report(_exceptionable2, {
1301
1301
  path: _path2 + ".mclassExcludeLst[" + _index24 + "]",
1302
- expected: '("Blank" | "CNV_amp" | "CNV_loh" | "CNV_losss" | "WT")',
1302
+ expected: '("Blank" | "CNV_amp" | "CNV_amplification" | "CNV_homozygous_deletion" | "CNV_loh" | "CNV_loss" | "WT")',
1303
1303
  value: elem
1304
1304
  })).every((flag) => flag) || $report(_exceptionable2, {
1305
1305
  path: _path2 + ".mclassExcludeLst",
package/dist/{chunk-BY2JABTF.js → chunk-RIJYASPK.js} RENAMED
@@ -21,7 +21,7 @@ var boxplotPayload = {
21
21
  var validBoxPlotRequest = (input) => {
22
22
  const errors = [];
23
23
  const __is = (input2) => {
24
- const $io0 = (input3) => "string" === typeof input3.genome && "string" === typeof input3.dslabel && true && true && true;
24
+ const $io0 = (input3) => "string" === typeof input3.genome && "string" === typeof input3.dslabel && "boolean" === typeof input3.orderByMedian && true && true && true;
25
25
  return "object" === typeof input2 && null !== input2 && $io0(input2);
26
26
  };
27
27
  if (false === __is(input)) {
@@ -35,6 +35,10 @@ var validBoxPlotRequest = (input) => {
35
35
  path: _path2 + ".dslabel",
36
36
  expected: "string",
37
37
  value: input3.dslabel
38
+ }), "boolean" === typeof input3.orderByMedian || $report(_exceptionable2, {
39
+ path: _path2 + ".orderByMedian",
40
+ expected: "boolean",
41
+ value: input3.orderByMedian
38
42
  }), true, true, true].every((flag) => flag);
39
43
  return ("object" === typeof input2 && null !== input2 || $report(true, {
40
44
  path: _path + "",
package/dist/{chunk-IWG5IPXG.js → chunk-SWWALBYP.js} RENAMED
@@ -116,7 +116,7 @@ var validCategoriesRequest = (input) => {
116
116
  const $io32 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "geneVariant" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io14(input3.values)) && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $io16(input3.groupsetting)) && "gene" === input3.kind && "string" === typeof input3.gene && (void 0 === input3.chr || "string" === typeof input3.chr) && (void 0 === input3.start || "number" === typeof input3.start) && (void 0 === input3.stop || "number" === typeof input3.stop);
117
117
  const $io33 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "geneVariant" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io14(input3.values)) && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $io16(input3.groupsetting)) && "coord" === input3.kind && "string" === typeof input3.chr && "number" === typeof input3.start && "number" === typeof input3.stop;
118
118
  const $io34 = (input3) => 1 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "M" === elem || "E" === elem || "F" === elem || "N" === elem || "S" === elem || "D" === elem || "I" === elem || "P" === elem || "L" === elem || "Intron" === elem || "Blank" === elem || "WT" === elem || "ITD" === elem || "DEL" === elem || "NLOSS" === elem || "CLOSS" === elem || "Utr3" === elem || "Utr5" === elem || "X" === elem || "noncoding" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "M" === elem || "E" === elem || "F" === elem || "N" === elem || "S" === elem || "D" === elem || "I" === elem || "P" === elem || "L" === elem || "Intron" === elem || "Blank" === elem || "WT" === elem || "ITD" === elem || "DEL" === elem || "NLOSS" === elem || "CLOSS" === elem || "Utr3" === elem || "Utr5" === elem || "X" === elem || "noncoding" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
119
- const $io35 = (input3) => 4 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
119
+ const $io35 = (input3) => 4 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
120
120
  const $io36 = (input3) => 5 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "SV" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "SV" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
121
121
  const $io37 = (input3) => 2 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "Fuserna" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "Fuserna" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
122
122
  const $io38 = (input3) => (void 0 === input3.id || "string" === typeof input3.id) && (void 0 === input3.$id || "string" === typeof input3.$id) && (void 0 === input3.isAtomic || true === input3.isAtomic) && true && (void 0 === input3.settings || "object" === typeof input3.settings && null !== input3.settings && false === Array.isArray(input3.settings) && $io2(input3.settings)) && true && (void 0 === input3.minNumSamples || "number" === typeof input3.minNumSamples) && true && ("object" === typeof input3.term && null !== input3.term && $io20(input3.term)) && ("object" === typeof input3.q && null !== input3.q && $iu11(input3.q));
@@ -1601,9 +1601,9 @@ var validCategoriesRequest = (input) => {
1601
1601
  path: _path2 + ".mclassLst",
1602
1602
  expected: "Array<CNVClasses>",
1603
1603
  value: input3.mclassLst
1604
- })) && input3.mclassLst.map((elem, _index25) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem || $report(_exceptionable2, {
1604
+ })) && input3.mclassLst.map((elem, _index25) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem || $report(_exceptionable2, {
1605
1605
  path: _path2 + ".mclassLst[" + _index25 + "]",
1606
- expected: '("Blank" | "CNV_amp" | "CNV_loh" | "CNV_losss" | "WT")',
1606
+ expected: '("Blank" | "CNV_amp" | "CNV_amplification" | "CNV_homozygous_deletion" | "CNV_loh" | "CNV_loss" | "WT")',
1607
1607
  value: elem
1608
1608
  })).every((flag) => flag) || $report(_exceptionable2, {
1609
1609
  path: _path2 + ".mclassLst",
@@ -1613,9 +1613,9 @@ var validCategoriesRequest = (input) => {
1613
1613
  path: _path2 + ".mclassExcludeLst",
1614
1614
  expected: "Array<CNVClasses>",
1615
1615
  value: input3.mclassExcludeLst
1616
- })) && input3.mclassExcludeLst.map((elem, _index26) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem || $report(_exceptionable2, {
1616
+ })) && input3.mclassExcludeLst.map((elem, _index26) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem || $report(_exceptionable2, {
1617
1617
  path: _path2 + ".mclassExcludeLst[" + _index26 + "]",
1618
- expected: '("Blank" | "CNV_amp" | "CNV_loh" | "CNV_losss" | "WT")',
1618
+ expected: '("Blank" | "CNV_amp" | "CNV_amplification" | "CNV_homozygous_deletion" | "CNV_loh" | "CNV_loss" | "WT")',
1619
1619
  value: elem
1620
1620
  })).every((flag) => flag) || $report(_exceptionable2, {
1621
1621
  path: _path2 + ".mclassExcludeLst",
package/dist/{chunk-INDBFC54.js → chunk-WCMW6A75.js} RENAMED
@@ -69,7 +69,7 @@ var validTermdbTopVariablyExpressedGenesRequest = (input) => {
69
69
  const $io28 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "geneVariant" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io6(input3.values)) && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $io8(input3.groupsetting)) && "gene" === input3.kind && "string" === typeof input3.gene && (void 0 === input3.chr || "string" === typeof input3.chr) && (void 0 === input3.start || "number" === typeof input3.start) && (void 0 === input3.stop || "number" === typeof input3.stop);
70
70
  const $io29 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "geneVariant" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io6(input3.values)) && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $io8(input3.groupsetting)) && "coord" === input3.kind && "string" === typeof input3.chr && "number" === typeof input3.start && "number" === typeof input3.stop;
71
71
  const $io30 = (input3) => 1 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "M" === elem || "E" === elem || "F" === elem || "N" === elem || "S" === elem || "D" === elem || "I" === elem || "P" === elem || "L" === elem || "Intron" === elem || "Blank" === elem || "WT" === elem || "ITD" === elem || "DEL" === elem || "NLOSS" === elem || "CLOSS" === elem || "Utr3" === elem || "Utr5" === elem || "X" === elem || "noncoding" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "M" === elem || "E" === elem || "F" === elem || "N" === elem || "S" === elem || "D" === elem || "I" === elem || "P" === elem || "L" === elem || "Intron" === elem || "Blank" === elem || "WT" === elem || "ITD" === elem || "DEL" === elem || "NLOSS" === elem || "CLOSS" === elem || "Utr3" === elem || "Utr5" === elem || "X" === elem || "noncoding" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
72
- const $io31 = (input3) => 4 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
72
+ const $io31 = (input3) => 4 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
73
73
  const $io32 = (input3) => 5 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "SV" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "SV" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
74
74
  const $io33 = (input3) => 2 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "Fuserna" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "Fuserna" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
75
75
  const $iu0 = (input3) => (() => {
@@ -1264,9 +1264,9 @@ var validTermdbTopVariablyExpressedGenesRequest = (input) => {
1264
1264
  path: _path2 + ".mclassLst",
1265
1265
  expected: "Array<CNVClasses>",
1266
1266
  value: input3.mclassLst
1267
- })) && input3.mclassLst.map((elem, _index24) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem || $report(_exceptionable2, {
1267
+ })) && input3.mclassLst.map((elem, _index24) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem || $report(_exceptionable2, {
1268
1268
  path: _path2 + ".mclassLst[" + _index24 + "]",
1269
- expected: '("Blank" | "CNV_amp" | "CNV_loh" | "CNV_losss" | "WT")',
1269
+ expected: '("Blank" | "CNV_amp" | "CNV_amplification" | "CNV_homozygous_deletion" | "CNV_loh" | "CNV_loss" | "WT")',
1270
1270
  value: elem
1271
1271
  })).every((flag) => flag) || $report(_exceptionable2, {
1272
1272
  path: _path2 + ".mclassLst",
@@ -1276,9 +1276,9 @@ var validTermdbTopVariablyExpressedGenesRequest = (input) => {
1276
1276
  path: _path2 + ".mclassExcludeLst",
1277
1277
  expected: "Array<CNVClasses>",
1278
1278
  value: input3.mclassExcludeLst
1279
- })) && input3.mclassExcludeLst.map((elem, _index25) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_losss" === elem || "CNV_loh" === elem || $report(_exceptionable2, {
1279
+ })) && input3.mclassExcludeLst.map((elem, _index25) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem || $report(_exceptionable2, {
1280
1280
  path: _path2 + ".mclassExcludeLst[" + _index25 + "]",
1281
- expected: '("Blank" | "CNV_amp" | "CNV_loh" | "CNV_losss" | "WT")',
1281
+ expected: '("Blank" | "CNV_amp" | "CNV_amplification" | "CNV_homozygous_deletion" | "CNV_loh" | "CNV_loss" | "WT")',
1282
1282
  value: elem
1283
1283
  })).every((flag) => flag) || $report(_exceptionable2, {
1284
1284
  path: _path2 + ".mclassExcludeLst",
package/dist/index.js CHANGED
@@ -2,12 +2,12 @@ import {
2
2
  termdbTopVariablyExpressedGenesPayload,
3
3
  validTermdbTopVariablyExpressedGenesRequest,
4
4
  validTermdbTopVariablyExpressedGenesResponse
5
- } from "./chunk-INDBFC54.js";
5
+ } from "./chunk-WCMW6A75.js";
6
6
  import {
7
7
  validViolinRequest,
8
8
  validViolinResponse,
9
9
  violinPayload
10
- } from "./chunk-IT7IGDC4.js";
10
+ } from "./chunk-MRCMGCVR.js";
11
11
  import {
12
12
  tilePayload,
13
13
  validTileRequest,
@@ -52,22 +52,22 @@ import {
52
52
  termsByIdsPayload,
53
53
  validTermsByIdsRequest,
54
54
  validTermsByIdsResponse
55
- } from "./chunk-M33KP65Z.js";
55
+ } from "./chunk-7K726NBK.js";
56
56
  import {
57
57
  termdbTopTermsByTypePayload,
58
58
  validTermdbTopTermsByTypeRequest,
59
59
  validTermdbTopTermsByTypeResponse
60
- } from "./chunk-W3F2RMPU.js";
60
+ } from "./chunk-CU5TLT6P.js";
61
61
  import {
62
62
  termdbCategoriesPayload,
63
63
  validCategoriesRequest,
64
64
  validCategoriesResponse
65
- } from "./chunk-IWG5IPXG.js";
65
+ } from "./chunk-SWWALBYP.js";
66
66
  import {
67
67
  termdbClusterPayload,
68
68
  validTermdbClusterRequest,
69
69
  validTermdbClusterResponse
70
- } from "./chunk-DKSPASWZ.js";
70
+ } from "./chunk-6FUNF4LO.js";
71
71
  import {
72
72
  termdbCohortSummaryPayload,
73
73
  validTermdbCohortSummaryRequest,
@@ -82,17 +82,17 @@ import {
82
82
  descrStatsPayload,
83
83
  validDescrStatsRequest,
84
84
  validDescrStatsResponse
85
- } from "./chunk-Q56YNQFK.js";
85
+ } from "./chunk-DBGYAS46.js";
86
86
  import {
87
87
  numericCategoriesPayload,
88
88
  validNumericCategoriesRequest,
89
89
  validNumericCategoriesResponse
90
- } from "./chunk-JEQ3TBVQ.js";
90
+ } from "./chunk-JDJZ35H6.js";
91
91
  import {
92
92
  percentilePayload,
93
93
  validPercentileRequest,
94
94
  validPercentileResponse
95
- } from "./chunk-JPW6LFDQ.js";
95
+ } from "./chunk-IORCECK2.js";
96
96
  import {
97
97
  rootTermPayload,
98
98
  validRootTermRequest,
@@ -132,7 +132,7 @@ import {
132
132
  boxplotPayload,
133
133
  validBoxPlotRequest,
134
134
  validBoxPlotResponse
135
- } from "./chunk-BY2JABTF.js";
135
+ } from "./chunk-RIJYASPK.js";
136
136
  import {
137
137
  gdcTopMutatedGenePayload,
138
138
  validGdcTopMutatedGeneRequest,
@@ -177,7 +177,7 @@ import {
177
177
  brainImagingPayload,
178
178
  validBrainImagingRequest,
179
179
  validBrainImagingResponse
180
- } from "./chunk-DCN75URO.js";
180
+ } from "./chunk-C3NI3SZV.js";
181
181
  import {
182
182
  brainImagingSamplesPayload,
183
183
  validBrainImagingSamplesRequest,
package/dist/termdb.boxplot.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  boxplotPayload,
3
3
  validBoxPlotRequest,
4
4
  validBoxPlotResponse
5
- } from "./chunk-BY2JABTF.js";
5
+ } from "./chunk-RIJYASPK.js";
6
6
  import "./chunk-Z6B6IQIY.js";
7
7
  export {
8
8
  boxplotPayload,
package/dist/termdb.categories.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  termdbCategoriesPayload,
3
3
  validCategoriesRequest,
4
4
  validCategoriesResponse
5
- } from "./chunk-IWG5IPXG.js";
5
+ } from "./chunk-SWWALBYP.js";
6
6
  import "./chunk-Z6B6IQIY.js";
7
7
  export {
8
8
  termdbCategoriesPayload,
package/dist/termdb.cluster.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  termdbClusterPayload,
3
3
  validTermdbClusterRequest,
4
4
  validTermdbClusterResponse
5
- } from "./chunk-DKSPASWZ.js";
5
+ } from "./chunk-6FUNF4LO.js";
6
6
  import "./chunk-Z6B6IQIY.js";
7
7
  export {
8
8
  termdbClusterPayload,
package/dist/termdb.descrstats.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  descrStatsPayload,
3
3
  validDescrStatsRequest,
4
4
  validDescrStatsResponse
5
- } from "./chunk-Q56YNQFK.js";
5
+ } from "./chunk-DBGYAS46.js";
6
6
  import "./chunk-Z6B6IQIY.js";
7
7
  export {
8
8
  descrStatsPayload,
package/dist/termdb.numericcategories.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  numericCategoriesPayload,
3
3
  validNumericCategoriesRequest,
4
4
  validNumericCategoriesResponse
5
- } from "./chunk-JEQ3TBVQ.js";
5
+ } from "./chunk-JDJZ35H6.js";
6
6
  import "./chunk-Z6B6IQIY.js";
7
7
  export {
8
8
  numericCategoriesPayload,
package/dist/termdb.percentile.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  percentilePayload,
3
3
  validPercentileRequest,
4
4
  validPercentileResponse
5
- } from "./chunk-JPW6LFDQ.js";
5
+ } from "./chunk-IORCECK2.js";
6
6
  import "./chunk-Z6B6IQIY.js";
7
7
  export {
8
8
  percentilePayload,
package/dist/termdb.termsbyids.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  termsByIdsPayload,
3
3
  validTermsByIdsRequest,
4
4
  validTermsByIdsResponse
5
- } from "./chunk-M33KP65Z.js";
5
+ } from "./chunk-7K726NBK.js";
6
6
  import "./chunk-Z6B6IQIY.js";
7
7
  export {
8
8
  termsByIdsPayload,
package/dist/termdb.topTermsByType.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  termdbTopTermsByTypePayload,
3
3
  validTermdbTopTermsByTypeRequest,
4
4
  validTermdbTopTermsByTypeResponse
5
- } from "./chunk-W3F2RMPU.js";
5
+ } from "./chunk-CU5TLT6P.js";
6
6
  import "./chunk-Z6B6IQIY.js";
7
7
  export {
8
8
  termdbTopTermsByTypePayload,
package/dist/termdb.topVariablyExpressedGenes.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  termdbTopVariablyExpressedGenesPayload,
3
3
  validTermdbTopVariablyExpressedGenesRequest,
4
4
  validTermdbTopVariablyExpressedGenesResponse
5
- } from "./chunk-INDBFC54.js";
5
+ } from "./chunk-WCMW6A75.js";
6
6
  import "./chunk-Z6B6IQIY.js";
7
7
  export {
8
8
  termdbTopVariablyExpressedGenesPayload,
package/dist/termdb.violin.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  validViolinRequest,
3
3
  validViolinResponse,
4
4
  violinPayload
5
- } from "./chunk-IT7IGDC4.js";
5
+ } from "./chunk-MRCMGCVR.js";
6
6
  import "./chunk-Z6B6IQIY.js";
7
7
  export {
8
8
  validViolinRequest,
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@sjcrh/proteinpaint-types",
3
- "version": "2.94.0",
3
+ "version": "2.96.0",
4
4
  "type": "module",
5
5
  "description": "Shared type definitions between ProteinPaint server and client code",
6
6
  "main": "src/index.ts",
package/src/dataset.ts CHANGED
@@ -243,6 +243,72 @@ type Population = {
243
243
  sets: PopulationINFOset[]
244
244
  }
245
245
 
246
+ /** primarily for prebuilding germline genetic association for survivorship portal
247
+ accessible to client via termdb.js?for=mds3queryDetails
248
+ part of state of genomeBrowser plot
249
+ allowing for user modification
250
+ */
251
+ type SnvindelComputeDetails = {
252
+ /** in each element, type corresponds to same key in groups[]
253
+ used for rendering choices in group data types; but content is read-only and should not be part of state
254
+ */
255
+ groupTypes: {
256
+ type: string
257
+ name: string
258
+ }[]
259
+ /** a type of computing decides numeric values for each variant displayed in tk
260
+ computing type is also determined by number of groups
261
+ if only 1 group:
262
+ type=info: use numeric info field
263
+ type=filter: use AF
264
+ type=population: use AF
265
+ if there're two groups:
266
+ both types are "filter": allow AF diff or fisher
267
+ "filter" and "population": allow AF diff or fisher
268
+ else: value difference
269
+ */
270
+ groups: (SnvindelComputeGroup_filter | SnvindelComputeGroup_population | SnvindelComputeGroup_info)[]
271
+ /** define lists of group-comparison methods to compute one numerical value per variant
272
+ */
273
+ groupTestMethods: {
274
+ /** method name. used both for display and identifier. cannot supply hardcoded values here as breaks tsc */
275
+ name: string
276
+ /** optional custom text to put on mds3 tk y axis */
277
+ axisLabel?: string
278
+ }[]
279
+ /** array index of groupTestMethods[] */
280
+ groupTestMethodsIdx: number
281
+ }
282
+ /** supplies a pp filter (or filter by cohort) to restrict to a subset of samples from which to compute AF for each variant.
283
+ the filter will be user-modifiable
284
+ */
285
+ type SnvindelComputeGroup_filter = {
286
+ // FIXME type value can only be 'filter' but breaks tsc
287
+ type: string //'filter'
288
+ /** a given filter applied to all cohorts */
289
+ //filter?: object
290
+ /** filter per cohort. use either filter or filterByCohort */
291
+ filterByCohort?: { [key: string]: object }
292
+ }
293
+ /** a choice from snvindel.populations[]
294
+ */
295
+ type SnvindelComputeGroup_population = {
296
+ type: string //'population'
297
+ /** used to identify corresponding population element */
298
+ key: string
299
+ /** redundant, should be copied over from snvindel.populations[] */
300
+ label: string
301
+ /** if true, can adjust race. may copy over instead of duplicating? */
302
+ allowto_adjust_race: boolean
303
+ /** if true, race adjustion is being applied */
304
+ adjust_race: boolean
305
+ }
306
+ type SnvindelComputeGroup_info = {
307
+ type: string //'info'
308
+ /** numerical INFO field name from bcf, allows to retrieve numeric values for each variant in tk */
309
+ infoKey: string
310
+ }
311
+
246
312
  /** a data type under ds.queries{} */
247
313
  type SnvIndelQuery = {
248
314
  forTrack?: boolean
@@ -269,7 +335,7 @@ so that it can work for a termdb-less ds, e.g. clinvar, where termdbConfig canno
269
335
  }
270
336
  allowSNPs?: boolean
271
337
  vcfid4skewerName?: boolean
272
- details?: any
338
+ details?: SnvindelComputeDetails
273
339
  }
274
340
 
275
341
  type SvFusion = {
@@ -286,9 +352,13 @@ type SingleSampleMutationQuery = {
286
352
  sample_id_key: string
287
353
  /** only required for src=native */
288
354
  folder?: string
289
- /** quick fix to hide chrM from disco, due to reason e.g. this dataset doesn't
290
- * have data on chrM */
291
- discoSkipChrM?: true
355
+ /** disco plot will be launched when singleSampleMutation is enabled. supply customization options here */
356
+ discoPlot?: {
357
+ /** if true, disco plot will hide chrM, due to reason e.g. this dataset doesn't have data on chrM */
358
+ skipChrM?: true
359
+ /** if true, filter mutations by predefined geneset by default */
360
+ prioritizeGeneLabelsByGeneSets?: true
361
+ }
292
362
  }
293
363
 
294
364
  type NIdataQuery = {
@@ -513,32 +583,30 @@ export type SingleCellGeneExpressionGdc = {
513
583
 
514
584
  export type SingleCellSamplesNative = {
515
585
  src: 'native'
516
-
517
- /** logic to decide sample table columns (the one shown on singlecell app ui, displaying a table of samples with sc data)
518
- a sample table will always have a sample column, to show sample.sample value
519
- firstColumnName allow to change name of 1st column from "Sample" to different, e.g. "Case" for gdc
520
- the other two properties allow to declare additional columns to be shown in table, that are for display only
521
- when sample.experiments[] are used, a last column of experiment id will be auto added
522
- */
586
+ /** kept to prevent tsc err */
523
587
  firstColumnName?: string
524
-
525
- /** do not use for native ds! gdc-only property. kept as optional to avoid tsc err */
526
- experimentColumns?: string
527
-
528
- /** any other columns to be added to sample table. each is a term id */
588
+ /** any columns to be added to sample table. each is a term id */
529
589
  sampleColumns?: { termid: string }[]
530
-
531
- /** dynamically added getter */
590
+ /** used on client but not on ds */
591
+ experimentColumns?: { label: string }[]
532
592
  get?: (q: any) => any
533
593
  }
534
594
 
535
595
  export type SingleCellSamplesGdc = {
536
596
  src: 'gdcapi'
537
- get?: (q: any) => any
538
597
  /** if missing refer to the samples as 'sample', this provides override e.g. 'case' */
598
+ /** logic to decide sample table columns (the one shown on singlecell app ui, displaying a table of samples with sc data)
599
+ a sample table will always have a sample column, to show sample.sample value
600
+ firstColumnName allow to change name of 1st column from "Sample" to different, e.g. "Case" for gdc
601
+ the other two properties allow to declare additional columns to be shown in table, that are for display only
602
+ when sample.experiments[] are used, a last column of experiment id will be auto added
603
+ */
539
604
  firstColumnName?: string
605
+ /** same as SingleCellSamplesNative */
540
606
  sampleColumns?: { termid: string }[]
607
+ /** used on client but not on ds */
541
608
  experimentColumns?: { label: string }[]
609
+ get?: (q: any) => any
542
610
  }
543
611
 
544
612
  export type SingleCellDataGdc = {
@@ -877,6 +945,10 @@ type SortPriorityEntry = {
877
945
  type SurvivalSettings = {
878
946
  /** The max time-to-event to be displayed in plot, hide all the samples with Time-to-Event longer than this maxTimeToEvent */
879
947
  maxTimeToEvent?: number
948
+ /** The time unit (months, years, etc) displayed in the x-axis of survival plot */
949
+ timeUnit?: string
950
+ /** the customized x-axis tick values of survival plot */
951
+ xTickValues?: number[]
880
952
  }
881
953
 
882
954
  type MatrixSettings = {
@@ -940,6 +1012,8 @@ type NumericDictTermCluster = {
940
1012
  settings?: NumericDictTermClusterSettings
941
1013
  /** list of numeric term ids that will be excluded from the numeric dictionary term cluster, add to usecase.detail to exclude terms*/
942
1014
  exclude?: string[]
1015
+ /** list of pre-built numericDictTermcluster plots */
1016
+ plots?: NumericDictTermClusterPlotsEntry[]
943
1017
  }
944
1018
 
945
1019
  type Survival = {
@@ -956,6 +1030,16 @@ type MatrixPlotsEntry = {
956
1030
  getConfig?: (f: any) => void
957
1031
  }
958
1032
 
1033
+ type NumericDictTermClusterPlotsEntry = {
1034
+ name: string
1035
+ file: string
1036
+ settings?: {
1037
+ [key: string]: any
1038
+ }
1039
+ /** helper function to get plot config from saved session file */
1040
+ getConfig?: (f: any) => void
1041
+ }
1042
+
959
1043
  type MatrixPlots = {
960
1044
  plots: MatrixPlotsEntry[]
961
1045
  }
package/src/filter.ts CHANGED
@@ -82,7 +82,7 @@ type SNVIndelTvsValue = {
82
82
  origin?: GeneVariantOrigin
83
83
  }
84
84
 
85
- type CNVClasses = 'CNV_amp' | 'CNV_losss' | 'CNV_loh' | 'Blank' | 'WT'
85
+ type CNVClasses = 'CNV_amp' | 'CNV_loss' | 'CNV_loh' | 'Blank' | 'WT' | 'CNV_amplification' | 'CNV_homozygous_deletion'
86
86
  type CNVTvsValue = {
87
87
  dt: 4
88
88
  mclassLst: CNVClasses[]
package/src/routes/termdb.boxplot.ts CHANGED
@@ -1,11 +1,14 @@
1
1
  import type { RoutePayload } from './routeApi.js'
2
2
 
3
+ /**Args set in Termdb vocab and from mass box plot */
3
4
  export type BoxPlotRequest = {
4
5
  /** Args set in TermVocab */
5
6
  /** term1 or term */
6
7
  tw: any
7
8
  genome: string
8
9
  dslabel: string
10
+ /** sort plots by median value */
11
+ orderByMedian: boolean
9
12
  /** term2 */
10
13
  overlayTw?: any
11
14
  filter: any