@sjcrh/proteinpaint-types 2.86.0 → 2.87.0

package/src/routes/termdb.cluster.js

@@ -1,12 +0,0 @@
-const termdbClusterPayload = {
-  request: {
-    typeId: "TermdbClusterRequest"
-  },
-  response: {
-    typeId: "TermdbClusterResponse"
-  }
-  //examples: []
-};
-export {
-  termdbClusterPayload
-};

package/src/routes/termdb.cohort.summary.js

@@ -1,12 +0,0 @@
-const termdbCohortSummaryPayload = {
-  request: {
-    typeId: "TermdbCohortSummaryRequest"
-  },
-  response: {
-    typeId: "TermdbCohortSummaryResponse"
-  }
-  // examples: []
-};
-export {
-  termdbCohortSummaryPayload
-};

package/src/routes/termdb.cohorts.js

@@ -1,12 +0,0 @@
-const termdbCohortsPayload = {
-  request: {
-    typeId: "TermdbCohortsRequest"
-  },
-  response: {
-    typeId: "TermdbCohortsResponse"
-  }
-  //examples: []
-};
-export {
-  termdbCohortsPayload
-};

package/src/routes/termdb.descrstats.js

@@ -1,48 +0,0 @@
-const descrStatsPayload = {
-  request: {
-    typeId: "DescrStatsRequest"
-  },
-  response: {
-    typeId: "DescrStatsResponse"
-  },
-  examples: [
-    {
-      request: {
-        body: {
-          genome: "hg38-test",
-          dslabel: "TermdbTest",
-          embedder: "localhost",
-          tw: { term: { id: "hrtavg" }, q: { mode: "continuous" } },
-          filter: {
-            type: "tvslst",
-            in: true,
-            join: "",
-            lst: [
-              {
-                tag: "cohortFilter",
-                type: "tvs",
-                tvs: {
-                  term: {
-                    name: "Cohort",
-                    type: "categorical",
-                    values: { ABC: { label: "ABC" }, XYZ: { label: "XYZ" } },
-                    id: "subcohort",
-                    isleaf: false,
-                    groupsetting: { disabled: true }
-                  },
-                  values: [{ key: "ABC", label: "ABC" }]
-                }
-              }
-            ]
-          }
-        }
-      },
-      response: {
-        header: { status: 200 }
-      }
-    }
-  ]
-};
-export {
-  descrStatsPayload
-};

package/src/routes/termdb.numericcategories.js

@@ -1,12 +0,0 @@
-const numericCategoriesPayload = {
-  request: {
-    typeId: "NumericCategoriesRequest"
-  },
-  response: {
-    typeId: "NumericCategoriesResponse"
-  }
-  // examples: []
-};
-export {
-  numericCategoriesPayload
-};

package/src/routes/termdb.percentile.js

@@ -1,49 +0,0 @@
-const percentilePayload = {
-  request: {
-    typeId: "PercentileRequest"
-  },
-  response: {
-    typeId: "PercentileResponse"
-  },
-  examples: [
-    {
-      request: {
-        body: {
-          genome: "hg38-test",
-          dslabel: "TermdbTest",
-          embedder: "localhost",
-          getpercentile: [50],
-          tid: "agedx",
-          filter: {
-            type: "tvslst",
-            in: true,
-            join: "",
-            lst: [
-              {
-                tag: "cohortFilter",
-                type: "tvs",
-                tvs: {
-                  term: {
-                    name: "Cohort",
-                    type: "categorical",
-                    values: { ABC: { label: "ABC" }, XYZ: { label: "XYZ" } },
-                    id: "subcohort",
-                    isleaf: false,
-                    groupsetting: { disabled: true }
-                  },
-                  values: [{ key: "ABC", label: "ABC" }]
-                }
-              }
-            ]
-          }
-        }
-      },
-      response: {
-        header: { status: 200 }
-      }
-    }
-  ]
-};
-export {
-  percentilePayload
-};

package/src/routes/termdb.rootterm.js

@@ -1,27 +0,0 @@
-const rootTermPayload = {
-  request: {
-    typeId: "RootTermRequest"
-  },
-  response: {
-    typeId: "RootTermResponse"
-  },
-  examples: [
-    {
-      request: {
-        body: {
-          genome: "hg38-test",
-          dslabel: "TermdbTest",
-          embedder: "localhost",
-          default_rootterm: 1,
-          cohortValues: "ABC"
-        }
-      },
-      response: {
-        header: { status: 200 }
-      }
-    }
-  ]
-};
-export {
-  rootTermPayload
-};

package/src/routes/termdb.sampleImages.js

@@ -1,12 +0,0 @@
-const termdbSampleImagesPayload = {
-  request: {
-    typeId: "TermdbSampleImagesRequest"
-  },
-  response: {
-    typeId: "TermdbSampleImagesResponse"
-  }
-  //examples: []
-};
-export {
-  termdbSampleImagesPayload
-};

package/src/routes/termdb.singleSampleMutation.js

@@ -1,12 +0,0 @@
-const termdbSingleSampleMutationPayload = {
-  request: {
-    typeId: "TermdbSingleSampleMutationRequest"
-  },
-  response: {
-    typeId: "TermdbSingleSampleMutationResponse"
-  }
-  // examples: []
-};
-export {
-  termdbSingleSampleMutationPayload
-};

package/src/routes/termdb.singlecellDEgenes.js

@@ -1,12 +0,0 @@
-const termdbSingleCellDEgenesPayload = {
-  request: {
-    typeId: "TermdbSingleCellDEgenesRequest"
-  },
-  response: {
-    typeId: "TermdbSingleCellDEgenesResponse"
-  }
-  // examples: []
-};
-export {
-  termdbSingleCellDEgenesPayload
-};

package/src/routes/termdb.singlecellData.js

@@ -1,12 +0,0 @@
-const termdbSingleCellDataPayload = {
-  request: {
-    typeId: "TermdbSingleCellDataRequest"
-  },
-  response: {
-    typeId: "TermdbSingleCellDataResponse"
-  }
-  // examples: []
-};
-export {
-  termdbSingleCellDataPayload
-};

package/src/routes/termdb.singlecellSamples.js

@@ -1,12 +0,0 @@
-const termdbSingleCellSamplesPayload = {
-  request: {
-    typeId: "TermdbSingleCellSamplesRequest"
-  },
-  response: {
-    typeId: "TermdbSingleCellSamplesResponse"
-  }
-  // examples: []
-};
-export {
-  termdbSingleCellSamplesPayload
-};

package/src/routes/termdb.termchildren.js

@@ -1,28 +0,0 @@
-const termChildrenPayload = {
-  request: {
-    typeId: "TermChildrenRequest"
-  },
-  response: {
-    typeId: "TermChildrenResponse"
-  },
-  examples: [
-    {
-      request: {
-        body: {
-          genome: "hg38-test",
-          dslabel: "TermdbTest",
-          embedder: "localhost",
-          get_children: 1,
-          cohortValues: "ABC",
-          tid: "GO:0000001"
-        }
-      },
-      response: {
-        header: { status: 200 }
-      }
-    }
-  ]
-};
-export {
-  termChildrenPayload
-};

package/src/routes/termdb.termsbyids.js

@@ -1,12 +0,0 @@
-const termsByIdsPayload = {
-  request: {
-    typeId: "TermsByIdsRequest"
-  },
-  response: {
-    typeId: "TermsByIdsResponse"
-  }
-  // examples: []
-};
-export {
-  termsByIdsPayload
-};

package/src/routes/termdb.topTermsByType.js

@@ -1,12 +0,0 @@
-const termdbTopTermsByTypePayload = {
-  request: {
-    typeId: "TermdbTopTermsByTypeRequest"
-  },
-  response: {
-    typeId: "TermdbTopTermsByTypeResponse"
-  }
-  // examples: []
-};
-export {
-  termdbTopTermsByTypePayload
-};

package/src/routes/termdb.topVariablyExpressedGenes.js

@@ -1,12 +0,0 @@
-const termdbTopVariablyExpressedGenesPayload = {
-  request: {
-    typeId: "TermdbTopVariablyExpressedGenesRequest"
-  },
-  response: {
-    typeId: "TermdbTopVariablyExpressedGenesResponse"
-  }
-  // examples: []
-};
-export {
-  termdbTopVariablyExpressedGenesPayload
-};

package/src/routes/termdb.violin.js

@@ -1,49 +0,0 @@
-const violinPayload = {
-  request: {
-    typeId: "ViolinRequest"
-  },
-  response: {
-    typeId: "ViolinResponse"
-  },
-  examples: [
-    {
-      request: {
-        body: {
-          genome: "hg38-test",
-          dslabel: "TermdbTest",
-          embedder: "localhost",
-          devicePixelRatio: 2.200000047683716,
-          maxThickness: 150,
-          screenThickness: 1218,
-          filter: {
-            type: "tvslst",
-            in: true,
-            join: "",
-            lst: [
-              {
-                tag: "cohortFilter",
-                type: "tvs",
-                tvs: { term: { id: "subcohort", type: "categorical" }, values: [{ key: "ABC", label: "ABC" }] }
-              }
-            ]
-          },
-          svgw: 227.27272234672367,
-          orientation: "horizontal",
-          datasymbol: "bean",
-          radius: 5,
-          strokeWidth: 0.2,
-          axisHeight: 60,
-          rightMargin: 50,
-          unit: "abs",
-          termid: "agedx"
-        }
-      },
-      response: {
-        header: { status: 200 }
-      }
-    }
-  ]
-};
-export {
-  violinPayload
-};

package/src/routes/tileserver.js

@@ -1,12 +0,0 @@
-const tilePayload = {
-  request: {
-    typeId: "TileRequest"
-  },
-  response: {
-    typeId: "TileResponse"
-  }
-  // examples: []
-};
-export {
-  tilePayload
-};

package/src/routes/wsimages.js

@@ -1,12 +0,0 @@
-const wsImagesPayload = {
-  request: {
-    typeId: "WSImagesRequest"
-  },
-  response: {
-    typeId: "WSImagesResponse"
-  }
-  // examples: []
-};
-export {
-  wsImagesPayload
-};

package/src/test/numeric.type.spec.js

@@ -1,117 +0,0 @@
-{
-  const valid = {
-    type: "float",
-    id: "someid",
-    name: "Some Dosage",
-    bins: {
-      default: {
-        type: "regular-bin",
-        bin_size: 1,
-        first_bin: {
-          startunbounded: true,
-          stop: 1
-        }
-      },
-      less: {
-        type: "custom-bin",
-        lst: [{ start: 0, stop: 1 }]
-      }
-    }
-  };
-  const A = { name: "test", type: "categorical" };
-  const B = { type: "integer" };
-  const C = {
-    // @ts-expect-error, should be string
-    name: 7,
-    type: "integer",
-    bins: {
-      default: {
-        type: "regular-bin",
-        bin_size: 1,
-        // tsc can detect type errors for deeply nested property values
-        // @ts-expect-error, does not match either StartUnboundedBin | FullyBoundedBin
-        first_bin: {
-          stop: 1
-        }
-      },
-      less: {
-        type: "custom-bin",
-        // @ts-expect-error, empty lst array
-        lst: []
-      }
-    }
-  };
-}
-{
-  const A = {
-    startunbounded: true,
-    startinclusive: true,
-    start: 0,
-    stop: 1,
-    stopinclusive: true,
-    stopunbounded: true
-  };
-  const B = {};
-  B.extraProp = "test";
-}
-{
-  const A = {
-    startunbounded: true,
-    stop: 1
-  };
-  const B = { startunbounded: true, start: 0, stop: 1 };
-  const C = { startunbounded: true };
-  const D = { startunbounded: true, start: 0, stop: 1, stopunbounded: true };
-  const E = {};
-  E.extraProp = "test";
-}
-{
-  const A = {
-    stopunbounded: true,
-    start: 0
-  };
-  const B = { stopunbounded: true, start: 0, stop: 1 };
-  const C = { stopunbounded: true };
-  const D = { startunbounded: true, start: 0, stop: 1, stopunbounded: true };
-}
-{
-  const A = {
-    startinclusive: true,
-    start: 0,
-    stop: 1
-  };
-  const B = { stop: 1 };
-  const C = { start: 0 };
-}
-const handlers = {
-  startUnbounded(bin) {
-    console.log(bin);
-  },
-  fullyBounded(bin) {
-    console.log(bin);
-  },
-  stopUnbounded(bin) {
-    console.log(bin);
-  }
-};
-function correctlyTypedProcessBin(bin) {
-  if (bin.startunbounded)
-    handlers.startUnbounded(bin);
-  else if (bin.stopunbounded)
-    handlers.stopUnbounded(bin);
-  else
-    handlers.fullyBounded(bin);
-}
-function incorrectProcessBin(bin) {
-  if (bin.startunbounded)
-    handlers.startUnbounded(bin);
-  else if (bin.stopunbounded)
-    handlers.stopUnbounded(bin);
-  else {
-    handlers.startUnbounded(bin);
-    handlers.stopUnbounded(bin);
-    handlers.fullyBounded(bin);
-    handlers.fullyBounded(bin);
-    handlers.fullyBounded(bin);
-  }
-}