@sjcrh/proteinpaint-types 2.188.0 → 2.189.0

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Files changed (23) hide show
  1. package/dist/aiProjectSelectedWSImages.js +1 -1
  2. package/dist/{chunk-YW5G4M5D.js → chunk-2X36CBQF.js} +2 -2
  3. package/dist/{chunk-VJB6F2HL.js → chunk-CWACV4MW.js} +4 -8
  4. package/dist/{chunk-BZVFHGN3.js → chunk-GCJESMM2.js} +5 -1
  5. package/dist/{chunk-G4MMYXP6.js → chunk-HD3J5BKM.js} +5 -1
  6. package/dist/{chunk-DUCWIRPX.js → chunk-KXYFG2HO.js} +4 -8
  7. package/dist/{chunk-ULKGA7YY.js → chunk-P3WBZJFF.js} +2 -2
  8. package/dist/{chunk-AGMCAWBR.js → chunk-SLXGWQZ4.js} +5 -1
  9. package/dist/{chunk-QNH3PKJK.js → chunk-TLZ5ROOU.js} +5 -1
  10. package/dist/{chunk-JDF7A2LY.js → chunk-UDTEGP3G.js} +5 -1
  11. package/dist/deleteWSITileSelection.js +1 -1
  12. package/dist/genesetEnrichment.js +1 -1
  13. package/dist/index.js +9 -9
  14. package/dist/samplewsimages.js +1 -1
  15. package/dist/saveWSIAnnotation.js +1 -1
  16. package/dist/termdb.DE.js +1 -1
  17. package/dist/termdb.dapVolcano.js +1 -1
  18. package/dist/termdb.diffMeth.js +1 -1
  19. package/dist/termdb.singlecellDEgenes.js +1 -1
  20. package/package.json +1 -1
  21. package/src/dataset.ts +4 -2
  22. package/src/routes/aiProjectSelectedWSImages.ts +3 -4
  23. package/src/routes/termdb.DE.ts +6 -0
package/dist/aiProjectSelectedWSImages.js CHANGED
@@ -2,7 +2,7 @@ import {
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  aiProjectSelectedWSImagesResponsePayload,
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  validAiProjectSelectedWSImagesRequest,
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  validAiProjectSelectedWSImagesResponse
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- } from "./chunk-DUCWIRPX.js";
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+ } from "./chunk-KXYFG2HO.js";
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  import "./chunk-YNHC5SXO.js";
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  export {
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  aiProjectSelectedWSImagesResponsePayload,
package/dist/{chunk-YW5G4M5D.js → chunk-2X36CBQF.js} RENAMED
@@ -21,7 +21,7 @@ var validSaveWSIAnnotationRequest = (input) => {
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  const errors = [];
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  const __is = (input2) => {
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  const $io0 = (input3) => "string" === typeof input3.genome && "string" === typeof input3.dslabel && ("object" === typeof input3.tileSelection && null !== input3.tileSelection && $io1(input3.tileSelection)) && "number" === typeof input3.classId && "number" === typeof input3.projectId && "string" === typeof input3.wsimage;
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- const $io1 = (input3) => Array.isArray(input3.zoomCoordinates) && (input3.zoomCoordinates.length === 2 && "number" === typeof input3.zoomCoordinates[0] && "number" === typeof input3.zoomCoordinates[1]) && (void 0 === input3["class"] || "string" === typeof input3["class"]) && (0 === input3.flag || 1 === input3.flag || 2 === input3.flag || 3 === input3.flag) && "string" === typeof input3.id && "string" === typeof input3.timestamp;
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+ const $io1 = (input3) => Array.isArray(input3.zoomCoordinates) && (input3.zoomCoordinates.length === 2 && "number" === typeof input3.zoomCoordinates[0] && "number" === typeof input3.zoomCoordinates[1]) && (void 0 === input3["class"] || "string" === typeof input3["class"]) && (0 === input3.flag || 2 === input3.flag || 1 === input3.flag || 3 === input3.flag) && "string" === typeof input3.id && "string" === typeof input3.timestamp;
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  return "object" === typeof input2 && null !== input2 && $io0(input2);
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  };
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  if (false === __is(input)) {
@@ -83,7 +83,7 @@ var validSaveWSIAnnotationRequest = (input) => {
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  path: _path2 + '["class"]',
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  expected: "(string | undefined)",
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  value: input3["class"]
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- }), 0 === input3.flag || 1 === input3.flag || 2 === input3.flag || 3 === input3.flag || $report(_exceptionable2, {
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+ }), 0 === input3.flag || 2 === input3.flag || 1 === input3.flag || 3 === input3.flag || $report(_exceptionable2, {
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  path: _path2 + ".flag",
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  expected: "(0 | 1 | 2 | 3)",
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  value: input3.flag
package/dist/{chunk-VJB6F2HL.js → chunk-CWACV4MW.js} RENAMED
@@ -71,8 +71,8 @@ var validSampleWSImagesResponse = (input) => {
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  const __is = (input2) => {
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  const $io0 = (input3) => Array.isArray(input3.sampleWSImages) && input3.sampleWSImages.every((elem) => "object" === typeof elem && null !== elem && $io1(elem));
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  const $io1 = (input3) => (void 0 === input3.id || "number" === typeof input3.id) && "string" === typeof input3.filename && (void 0 === input3.metadata || "string" === typeof input3.metadata) && (void 0 === input3.predictionLayers || Array.isArray(input3.predictionLayers) && input3.predictionLayers.every((elem) => "string" === typeof elem)) && (void 0 === input3.annotations || Array.isArray(input3.annotations) && input3.annotations.every((elem) => "object" === typeof elem && null !== elem && $io2(elem))) && (void 0 === input3.predictions || Array.isArray(input3.predictions) && input3.predictions.every((elem) => "object" === typeof elem && null !== elem && $io3(elem))) && (void 0 === input3.classes || Array.isArray(input3.classes) && input3.classes.every((elem) => "object" === typeof elem && null !== elem && $io4(elem))) && true && (void 0 === input3.activePatchColor || "string" === typeof input3.activePatchColor) && (void 0 === input3.tileSize || "number" === typeof input3.tileSize);
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- const $io2 = (input3) => "string" === typeof input3["class"] && "number" === typeof input3.status && (Array.isArray(input3.zoomCoordinates) && (input3.zoomCoordinates.length === 2 && "number" === typeof input3.zoomCoordinates[0] && "number" === typeof input3.zoomCoordinates[1])) && (0 === input3.flag || 1 === input3.flag || 2 === input3.flag || 3 === input3.flag) && "string" === typeof input3.id && "string" === typeof input3.timestamp;
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- const $io3 = (input3) => "string" === typeof input3["class"] && "number" === typeof input3.uncertainty && (Array.isArray(input3.zoomCoordinates) && (input3.zoomCoordinates.length === 2 && "number" === typeof input3.zoomCoordinates[0] && "number" === typeof input3.zoomCoordinates[1])) && (0 === input3.flag || 1 === input3.flag || 2 === input3.flag || 3 === input3.flag) && "string" === typeof input3.id && "string" === typeof input3.timestamp;
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+ const $io2 = (input3) => "string" === typeof input3["class"] && (Array.isArray(input3.zoomCoordinates) && (input3.zoomCoordinates.length === 2 && "number" === typeof input3.zoomCoordinates[0] && "number" === typeof input3.zoomCoordinates[1])) && (0 === input3.flag || 2 === input3.flag || 1 === input3.flag || 3 === input3.flag) && "string" === typeof input3.id && "string" === typeof input3.timestamp;
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+ const $io3 = (input3) => "string" === typeof input3["class"] && "number" === typeof input3.uncertainty && (Array.isArray(input3.zoomCoordinates) && (input3.zoomCoordinates.length === 2 && "number" === typeof input3.zoomCoordinates[0] && "number" === typeof input3.zoomCoordinates[1])) && (0 === input3.flag || 2 === input3.flag || 1 === input3.flag || 3 === input3.flag) && "string" === typeof input3.id && "string" === typeof input3.timestamp;
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  const $io4 = (input3) => "number" === typeof input3.id && "string" === typeof input3.key_shortcut && "string" === typeof input3.label && "string" === typeof input3.color;
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  return "object" === typeof input2 && null !== input2 && $io0(input2);
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  };
@@ -181,10 +181,6 @@ var validSampleWSImagesResponse = (input) => {
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  path: _path2 + '["class"]',
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  expected: "string",
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  value: input3["class"]
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- }), "number" === typeof input3.status || $report(_exceptionable2, {
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- path: _path2 + ".status",
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- expected: "number",
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- value: input3.status
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  }), (Array.isArray(input3.zoomCoordinates) || $report(_exceptionable2, {
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  path: _path2 + ".zoomCoordinates",
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  expected: "[number, number]",
@@ -208,7 +204,7 @@ var validSampleWSImagesResponse = (input) => {
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  path: _path2 + ".zoomCoordinates",
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  expected: "[number, number]",
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  value: input3.zoomCoordinates
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- }), 0 === input3.flag || 1 === input3.flag || 2 === input3.flag || 3 === input3.flag || $report(_exceptionable2, {
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+ }), 0 === input3.flag || 2 === input3.flag || 1 === input3.flag || 3 === input3.flag || $report(_exceptionable2, {
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  path: _path2 + ".flag",
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  expected: "(0 | 1 | 2 | 3)",
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  value: input3.flag
@@ -252,7 +248,7 @@ var validSampleWSImagesResponse = (input) => {
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  path: _path2 + ".zoomCoordinates",
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  expected: "[number, number]",
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  value: input3.zoomCoordinates
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- }), 0 === input3.flag || 1 === input3.flag || 2 === input3.flag || 3 === input3.flag || $report(_exceptionable2, {
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+ }), 0 === input3.flag || 2 === input3.flag || 1 === input3.flag || 3 === input3.flag || $report(_exceptionable2, {
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  path: _path2 + ".flag",
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  expected: "(0 | 1 | 2 | 3)",
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  value: input3.flag
package/dist/{chunk-BZVFHGN3.js → chunk-GCJESMM2.js} RENAMED
@@ -23,7 +23,7 @@ var validTermdbSingleCellDEgenesRequest = (input) => {
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  const __is = (input2) => {
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  const $io0 = (input3) => "string" === typeof input3.genome && "string" === typeof input3.dslabel && (null !== input3.sample && void 0 !== input3.sample && ("string" === typeof input3.sample || "object" === typeof input3.sample && null !== input3.sample && $io1(input3.sample))) && "string" === typeof input3.termId && "string" === typeof input3.categoryName && ("object" === typeof input3.volcanoRender && null !== input3.volcanoRender && $io2(input3.volcanoRender));
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  const $io1 = (input3) => "string" === typeof input3.sID && "string" === typeof input3.eID;
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- const $io2 = (input3) => "object" === typeof input3.significanceThresholds && null !== input3.significanceThresholds && $io3(input3.significanceThresholds) && "number" === typeof input3.pixelWidth && "number" === typeof input3.pixelHeight && (void 0 === input3.colorSignificant || "string" === typeof input3.colorSignificant) && (void 0 === input3.colorSignificantUp || "string" === typeof input3.colorSignificantUp) && (void 0 === input3.colorSignificantDown || "string" === typeof input3.colorSignificantDown) && (void 0 === input3.colorNonsignificant || "string" === typeof input3.colorNonsignificant) && (void 0 === input3.dotRadius || "number" === typeof input3.dotRadius) && (void 0 === input3.maxInteractiveDots || "number" === typeof input3.maxInteractiveDots);
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+ const $io2 = (input3) => "object" === typeof input3.significanceThresholds && null !== input3.significanceThresholds && $io3(input3.significanceThresholds) && "number" === typeof input3.pixelWidth && "number" === typeof input3.pixelHeight && (void 0 === input3.colorSignificant || "string" === typeof input3.colorSignificant) && (void 0 === input3.colorSignificantUp || "string" === typeof input3.colorSignificantUp) && (void 0 === input3.colorSignificantDown || "string" === typeof input3.colorSignificantDown) && (void 0 === input3.colorNonsignificant || "string" === typeof input3.colorNonsignificant) && (void 0 === input3.dotRadius || "number" === typeof input3.dotRadius) && (void 0 === input3.maxInteractiveDots || "number" === typeof input3.maxInteractiveDots) && (void 0 === input3.devicePixelRatio || "number" === typeof input3.devicePixelRatio);
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  const $io3 = (input3) => "number" === typeof input3.pValueCutoff && ("adjusted" === input3.pValueType || "original" === input3.pValueType) && "number" === typeof input3.foldChangeCutoff;
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  return "object" === typeof input2 && null !== input2 && $io0(input2);
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  };
@@ -120,6 +120,10 @@ var validTermdbSingleCellDEgenesRequest = (input) => {
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  path: _path2 + ".maxInteractiveDots",
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  expected: "(number | undefined)",
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  value: input3.maxInteractiveDots
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+ }), void 0 === input3.devicePixelRatio || "number" === typeof input3.devicePixelRatio || $report(_exceptionable2, {
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+ path: _path2 + ".devicePixelRatio",
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+ expected: "(number | undefined)",
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+ value: input3.devicePixelRatio
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  })].every((flag) => flag);
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  const $vo3 = (input3, _path2, _exceptionable2 = true) => ["number" === typeof input3.pValueCutoff || $report(_exceptionable2, {
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  path: _path2 + ".pValueCutoff",
package/dist/{chunk-G4MMYXP6.js → chunk-HD3J5BKM.js} RENAMED
@@ -23,7 +23,7 @@ var validDERequest = (input) => {
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  const errors = [];
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  const __is = (input2) => {
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  const $io0 = (input3) => "string" === typeof input3.genome && "string" === typeof input3.dslabel && true && "number" === typeof input3.min_count && "number" === typeof input3.min_total_count && "number" === typeof input3.cpm_cutoff && ("text" === input3.storage_type || "HDF5" === input3.storage_type) && (void 0 === input3.method || "string" === typeof input3.method) && true && true && (void 0 === input3.preAnalysis || "boolean" === typeof input3.preAnalysis) && ("object" === typeof input3.volcanoRender && null !== input3.volcanoRender && $io1(input3.volcanoRender));
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- const $io1 = (input3) => "object" === typeof input3.significanceThresholds && null !== input3.significanceThresholds && $io2(input3.significanceThresholds) && "number" === typeof input3.pixelWidth && "number" === typeof input3.pixelHeight && (void 0 === input3.colorSignificant || "string" === typeof input3.colorSignificant) && (void 0 === input3.colorSignificantUp || "string" === typeof input3.colorSignificantUp) && (void 0 === input3.colorSignificantDown || "string" === typeof input3.colorSignificantDown) && (void 0 === input3.colorNonsignificant || "string" === typeof input3.colorNonsignificant) && (void 0 === input3.dotRadius || "number" === typeof input3.dotRadius) && (void 0 === input3.maxInteractiveDots || "number" === typeof input3.maxInteractiveDots);
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+ const $io1 = (input3) => "object" === typeof input3.significanceThresholds && null !== input3.significanceThresholds && $io2(input3.significanceThresholds) && "number" === typeof input3.pixelWidth && "number" === typeof input3.pixelHeight && (void 0 === input3.colorSignificant || "string" === typeof input3.colorSignificant) && (void 0 === input3.colorSignificantUp || "string" === typeof input3.colorSignificantUp) && (void 0 === input3.colorSignificantDown || "string" === typeof input3.colorSignificantDown) && (void 0 === input3.colorNonsignificant || "string" === typeof input3.colorNonsignificant) && (void 0 === input3.dotRadius || "number" === typeof input3.dotRadius) && (void 0 === input3.maxInteractiveDots || "number" === typeof input3.maxInteractiveDots) && (void 0 === input3.devicePixelRatio || "number" === typeof input3.devicePixelRatio);
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  const $io2 = (input3) => "number" === typeof input3.pValueCutoff && ("adjusted" === input3.pValueType || "original" === input3.pValueType) && "number" === typeof input3.foldChangeCutoff;
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  return "object" === typeof input2 && null !== input2 && $io0(input2);
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  };
@@ -111,6 +111,10 @@ var validDERequest = (input) => {
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  path: _path2 + ".maxInteractiveDots",
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  expected: "(number | undefined)",
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  value: input3.maxInteractiveDots
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+ }), void 0 === input3.devicePixelRatio || "number" === typeof input3.devicePixelRatio || $report(_exceptionable2, {
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+ path: _path2 + ".devicePixelRatio",
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+ expected: "(number | undefined)",
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+ value: input3.devicePixelRatio
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  })].every((flag) => flag);
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  const $vo2 = (input3, _path2, _exceptionable2 = true) => ["number" === typeof input3.pValueCutoff || $report(_exceptionable2, {
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  path: _path2 + ".pValueCutoff",
package/dist/{chunk-DUCWIRPX.js → chunk-KXYFG2HO.js} RENAMED
@@ -74,8 +74,8 @@ var validAiProjectSelectedWSImagesResponse = (input) => {
74
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  const __is = (input2) => {
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  const $io0 = (input3) => Array.isArray(input3.wsimages) && input3.wsimages.every((elem) => "object" === typeof elem && null !== elem && $io1(elem));
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  const $io1 = (input3) => (void 0 === input3.id || "number" === typeof input3.id) && "string" === typeof input3.filename && (void 0 === input3.metadata || "string" === typeof input3.metadata) && (void 0 === input3.predictionLayers || Array.isArray(input3.predictionLayers) && input3.predictionLayers.every((elem) => "string" === typeof elem)) && (void 0 === input3.annotations || Array.isArray(input3.annotations) && input3.annotations.every((elem) => "object" === typeof elem && null !== elem && $io2(elem))) && (void 0 === input3.predictions || Array.isArray(input3.predictions) && input3.predictions.every((elem) => "object" === typeof elem && null !== elem && $io3(elem))) && (void 0 === input3.classes || Array.isArray(input3.classes) && input3.classes.every((elem) => "object" === typeof elem && null !== elem && $io4(elem))) && true && (void 0 === input3.activePatchColor || "string" === typeof input3.activePatchColor) && (void 0 === input3.tileSize || "number" === typeof input3.tileSize);
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- const $io2 = (input3) => "string" === typeof input3["class"] && "number" === typeof input3.status && (Array.isArray(input3.zoomCoordinates) && (input3.zoomCoordinates.length === 2 && "number" === typeof input3.zoomCoordinates[0] && "number" === typeof input3.zoomCoordinates[1])) && (0 === input3.flag || 1 === input3.flag || 2 === input3.flag || 3 === input3.flag) && "string" === typeof input3.id && "string" === typeof input3.timestamp;
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- const $io3 = (input3) => "string" === typeof input3["class"] && "number" === typeof input3.uncertainty && (Array.isArray(input3.zoomCoordinates) && (input3.zoomCoordinates.length === 2 && "number" === typeof input3.zoomCoordinates[0] && "number" === typeof input3.zoomCoordinates[1])) && (0 === input3.flag || 1 === input3.flag || 2 === input3.flag || 3 === input3.flag) && "string" === typeof input3.id && "string" === typeof input3.timestamp;
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+ const $io2 = (input3) => "string" === typeof input3["class"] && (Array.isArray(input3.zoomCoordinates) && (input3.zoomCoordinates.length === 2 && "number" === typeof input3.zoomCoordinates[0] && "number" === typeof input3.zoomCoordinates[1])) && (0 === input3.flag || 2 === input3.flag || 1 === input3.flag || 3 === input3.flag) && "string" === typeof input3.id && "string" === typeof input3.timestamp;
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+ const $io3 = (input3) => "string" === typeof input3["class"] && "number" === typeof input3.uncertainty && (Array.isArray(input3.zoomCoordinates) && (input3.zoomCoordinates.length === 2 && "number" === typeof input3.zoomCoordinates[0] && "number" === typeof input3.zoomCoordinates[1])) && (0 === input3.flag || 2 === input3.flag || 1 === input3.flag || 3 === input3.flag) && "string" === typeof input3.id && "string" === typeof input3.timestamp;
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  const $io4 = (input3) => "number" === typeof input3.id && "string" === typeof input3.key_shortcut && "string" === typeof input3.label && "string" === typeof input3.color;
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  return "object" === typeof input2 && null !== input2 && $io0(input2);
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  };
@@ -184,10 +184,6 @@ var validAiProjectSelectedWSImagesResponse = (input) => {
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  path: _path2 + '["class"]',
185
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  expected: "string",
186
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  value: input3["class"]
187
- }), "number" === typeof input3.status || $report(_exceptionable2, {
188
- path: _path2 + ".status",
189
- expected: "number",
190
- value: input3.status
191
187
  }), (Array.isArray(input3.zoomCoordinates) || $report(_exceptionable2, {
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  path: _path2 + ".zoomCoordinates",
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  expected: "[number, number]",
@@ -211,7 +207,7 @@ var validAiProjectSelectedWSImagesResponse = (input) => {
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  path: _path2 + ".zoomCoordinates",
212
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  expected: "[number, number]",
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  value: input3.zoomCoordinates
214
- }), 0 === input3.flag || 1 === input3.flag || 2 === input3.flag || 3 === input3.flag || $report(_exceptionable2, {
210
+ }), 0 === input3.flag || 2 === input3.flag || 1 === input3.flag || 3 === input3.flag || $report(_exceptionable2, {
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  path: _path2 + ".flag",
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  expected: "(0 | 1 | 2 | 3)",
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  value: input3.flag
@@ -255,7 +251,7 @@ var validAiProjectSelectedWSImagesResponse = (input) => {
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  path: _path2 + ".zoomCoordinates",
256
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  expected: "[number, number]",
257
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  value: input3.zoomCoordinates
258
- }), 0 === input3.flag || 1 === input3.flag || 2 === input3.flag || 3 === input3.flag || $report(_exceptionable2, {
254
+ }), 0 === input3.flag || 2 === input3.flag || 1 === input3.flag || 3 === input3.flag || $report(_exceptionable2, {
259
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  path: _path2 + ".flag",
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  expected: "(0 | 1 | 2 | 3)",
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  value: input3.flag
package/dist/{chunk-ULKGA7YY.js → chunk-P3WBZJFF.js} RENAMED
@@ -21,7 +21,7 @@ var validDeleteWSITileSelectionRequest = (input) => {
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  const errors = [];
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  const __is = (input2) => {
23
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  const $io0 = (input3) => "string" === typeof input3.genome && "string" === typeof input3.dslabel && "number" === typeof input3.projectId && ("object" === typeof input3.tileSelection && null !== input3.tileSelection && $io1(input3.tileSelection)) && "number" === typeof input3.classID && "string" === typeof input3.wsimage;
24
- const $io1 = (input3) => Array.isArray(input3.zoomCoordinates) && (input3.zoomCoordinates.length === 2 && "number" === typeof input3.zoomCoordinates[0] && "number" === typeof input3.zoomCoordinates[1]) && (void 0 === input3["class"] || "string" === typeof input3["class"]) && (0 === input3.flag || 1 === input3.flag || 2 === input3.flag || 3 === input3.flag) && "string" === typeof input3.id && "string" === typeof input3.timestamp;
24
+ const $io1 = (input3) => Array.isArray(input3.zoomCoordinates) && (input3.zoomCoordinates.length === 2 && "number" === typeof input3.zoomCoordinates[0] && "number" === typeof input3.zoomCoordinates[1]) && (void 0 === input3["class"] || "string" === typeof input3["class"]) && (0 === input3.flag || 2 === input3.flag || 1 === input3.flag || 3 === input3.flag) && "string" === typeof input3.id && "string" === typeof input3.timestamp;
25
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  return "object" === typeof input2 && null !== input2 && $io0(input2);
26
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  };
27
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  if (false === __is(input)) {
@@ -83,7 +83,7 @@ var validDeleteWSITileSelectionRequest = (input) => {
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  path: _path2 + '["class"]',
84
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  expected: "(string | undefined)",
85
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  value: input3["class"]
86
- }), 0 === input3.flag || 1 === input3.flag || 2 === input3.flag || 3 === input3.flag || $report(_exceptionable2, {
86
+ }), 0 === input3.flag || 2 === input3.flag || 1 === input3.flag || 3 === input3.flag || $report(_exceptionable2, {
87
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  path: _path2 + ".flag",
88
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  expected: "(0 | 1 | 2 | 3)",
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  value: input3.flag
package/dist/{chunk-AGMCAWBR.js → chunk-SLXGWQZ4.js} RENAMED
@@ -23,7 +23,7 @@ var validGenesetEnrichmentRequest = (input) => {
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  const __is = (input2) => {
24
24
  const $io0 = (input3) => (void 0 === input3.genes || Array.isArray(input3.genes) && input3.genes.every((elem) => "string" === typeof elem)) && (void 0 === input3.fold_change || Array.isArray(input3.fold_change) && input3.fold_change.every((elem) => "number" === typeof elem)) && (void 0 === input3.cacheId || "string" === typeof input3.cacheId) && (void 0 === input3.dslabel || "string" === typeof input3.dslabel) && (void 0 === input3.daRequest || "object" === typeof input3.daRequest && null !== input3.daRequest && $io1(input3.daRequest)) && (void 0 === input3.fetchDE || "boolean" === typeof input3.fetchDE) && "boolean" === typeof input3.filter_non_coding_genes && "string" === typeof input3.genome && "string" === typeof input3.geneSetGroup && (void 0 === input3.geneset_name || "string" === typeof input3.geneset_name) && (void 0 === input3.num_permutations || "number" === typeof input3.num_permutations) && ("blitzgsea" === input3.method || "cerno" === input3.method) && (void 0 === input3.dapParams || "object" === typeof input3.dapParams && null !== input3.dapParams && $io4(input3.dapParams));
25
25
  const $io1 = (input3) => (void 0 === input3.genome || "string" === typeof input3.genome) && (void 0 === input3.dslabel || "string" === typeof input3.dslabel) && true && (void 0 === input3.min_count || "number" === typeof input3.min_count) && (void 0 === input3.min_total_count || "number" === typeof input3.min_total_count) && (void 0 === input3.cpm_cutoff || "number" === typeof input3.cpm_cutoff) && (void 0 === input3.storage_type || "text" === input3.storage_type || "HDF5" === input3.storage_type) && (void 0 === input3.method || "string" === typeof input3.method) && true && true && (void 0 === input3.preAnalysis || "boolean" === typeof input3.preAnalysis) && (void 0 === input3.volcanoRender || "object" === typeof input3.volcanoRender && null !== input3.volcanoRender && $io2(input3.volcanoRender));
26
- const $io2 = (input3) => "object" === typeof input3.significanceThresholds && null !== input3.significanceThresholds && $io3(input3.significanceThresholds) && "number" === typeof input3.pixelWidth && "number" === typeof input3.pixelHeight && (void 0 === input3.colorSignificant || "string" === typeof input3.colorSignificant) && (void 0 === input3.colorSignificantUp || "string" === typeof input3.colorSignificantUp) && (void 0 === input3.colorSignificantDown || "string" === typeof input3.colorSignificantDown) && (void 0 === input3.colorNonsignificant || "string" === typeof input3.colorNonsignificant) && (void 0 === input3.dotRadius || "number" === typeof input3.dotRadius) && (void 0 === input3.maxInteractiveDots || "number" === typeof input3.maxInteractiveDots);
26
+ const $io2 = (input3) => "object" === typeof input3.significanceThresholds && null !== input3.significanceThresholds && $io3(input3.significanceThresholds) && "number" === typeof input3.pixelWidth && "number" === typeof input3.pixelHeight && (void 0 === input3.colorSignificant || "string" === typeof input3.colorSignificant) && (void 0 === input3.colorSignificantUp || "string" === typeof input3.colorSignificantUp) && (void 0 === input3.colorSignificantDown || "string" === typeof input3.colorSignificantDown) && (void 0 === input3.colorNonsignificant || "string" === typeof input3.colorNonsignificant) && (void 0 === input3.dotRadius || "number" === typeof input3.dotRadius) && (void 0 === input3.maxInteractiveDots || "number" === typeof input3.maxInteractiveDots) && (void 0 === input3.devicePixelRatio || "number" === typeof input3.devicePixelRatio);
27
27
  const $io3 = (input3) => "number" === typeof input3.pValueCutoff && ("adjusted" === input3.pValueType || "original" === input3.pValueType) && "number" === typeof input3.foldChangeCutoff;
28
28
  const $io4 = (input3) => "string" === typeof input3.organism && "string" === typeof input3.assay && "string" === typeof input3.cohort;
29
29
  return "object" === typeof input2 && null !== input2 && $io0(input2);
@@ -189,6 +189,10 @@ var validGenesetEnrichmentRequest = (input) => {
189
189
  path: _path2 + ".maxInteractiveDots",
190
190
  expected: "(number | undefined)",
191
191
  value: input3.maxInteractiveDots
192
+ }), void 0 === input3.devicePixelRatio || "number" === typeof input3.devicePixelRatio || $report(_exceptionable2, {
193
+ path: _path2 + ".devicePixelRatio",
194
+ expected: "(number | undefined)",
195
+ value: input3.devicePixelRatio
192
196
  })].every((flag) => flag);
193
197
  const $vo3 = (input3, _path2, _exceptionable2 = true) => ["number" === typeof input3.pValueCutoff || $report(_exceptionable2, {
194
198
  path: _path2 + ".pValueCutoff",
package/dist/{chunk-QNH3PKJK.js → chunk-TLZ5ROOU.js} RENAMED
@@ -21,7 +21,7 @@ var validDapVolcanoRequest = (input) => {
21
21
  const errors = [];
22
22
  const __is = (input2) => {
23
23
  const $io0 = (input3) => "string" === typeof input3.genome && "string" === typeof input3.dslabel && "string" === typeof input3.organism && "string" === typeof input3.assay && "string" === typeof input3.cohort && (void 0 === input3.volcanoRender || "object" === typeof input3.volcanoRender && null !== input3.volcanoRender && $io1(input3.volcanoRender)) && (void 0 === input3.countsOnly || "boolean" === typeof input3.countsOnly);
24
- const $io1 = (input3) => "object" === typeof input3.significanceThresholds && null !== input3.significanceThresholds && $io2(input3.significanceThresholds) && "number" === typeof input3.pixelWidth && "number" === typeof input3.pixelHeight && (void 0 === input3.colorSignificant || "string" === typeof input3.colorSignificant) && (void 0 === input3.colorSignificantUp || "string" === typeof input3.colorSignificantUp) && (void 0 === input3.colorSignificantDown || "string" === typeof input3.colorSignificantDown) && (void 0 === input3.colorNonsignificant || "string" === typeof input3.colorNonsignificant) && (void 0 === input3.dotRadius || "number" === typeof input3.dotRadius) && (void 0 === input3.maxInteractiveDots || "number" === typeof input3.maxInteractiveDots);
24
+ const $io1 = (input3) => "object" === typeof input3.significanceThresholds && null !== input3.significanceThresholds && $io2(input3.significanceThresholds) && "number" === typeof input3.pixelWidth && "number" === typeof input3.pixelHeight && (void 0 === input3.colorSignificant || "string" === typeof input3.colorSignificant) && (void 0 === input3.colorSignificantUp || "string" === typeof input3.colorSignificantUp) && (void 0 === input3.colorSignificantDown || "string" === typeof input3.colorSignificantDown) && (void 0 === input3.colorNonsignificant || "string" === typeof input3.colorNonsignificant) && (void 0 === input3.dotRadius || "number" === typeof input3.dotRadius) && (void 0 === input3.maxInteractiveDots || "number" === typeof input3.maxInteractiveDots) && (void 0 === input3.devicePixelRatio || "number" === typeof input3.devicePixelRatio);
25
25
  const $io2 = (input3) => "number" === typeof input3.pValueCutoff && ("adjusted" === input3.pValueType || "original" === input3.pValueType) && "number" === typeof input3.foldChangeCutoff;
26
26
  return "object" === typeof input2 && null !== input2 && $io0(input2);
27
27
  };
@@ -101,6 +101,10 @@ var validDapVolcanoRequest = (input) => {
101
101
  path: _path2 + ".maxInteractiveDots",
102
102
  expected: "(number | undefined)",
103
103
  value: input3.maxInteractiveDots
104
+ }), void 0 === input3.devicePixelRatio || "number" === typeof input3.devicePixelRatio || $report(_exceptionable2, {
105
+ path: _path2 + ".devicePixelRatio",
106
+ expected: "(number | undefined)",
107
+ value: input3.devicePixelRatio
104
108
  })].every((flag) => flag);
105
109
  const $vo2 = (input3, _path2, _exceptionable2 = true) => ["number" === typeof input3.pValueCutoff || $report(_exceptionable2, {
106
110
  path: _path2 + ".pValueCutoff",
package/dist/{chunk-JDF7A2LY.js → chunk-UDTEGP3G.js} RENAMED
@@ -21,7 +21,7 @@ var validDiffMethRequest = (input) => {
21
21
  const errors = [];
22
22
  const __is = (input2) => {
23
23
  const $io0 = (input3) => "string" === typeof input3.genome && "string" === typeof input3.dslabel && true && (void 0 === input3.min_samples_per_group || "number" === typeof input3.min_samples_per_group) && true && true && (void 0 === input3.preAnalysis || "boolean" === typeof input3.preAnalysis) && ("object" === typeof input3.volcanoRender && null !== input3.volcanoRender && $io1(input3.volcanoRender));
24
- const $io1 = (input3) => "object" === typeof input3.significanceThresholds && null !== input3.significanceThresholds && $io2(input3.significanceThresholds) && "number" === typeof input3.pixelWidth && "number" === typeof input3.pixelHeight && (void 0 === input3.colorSignificant || "string" === typeof input3.colorSignificant) && (void 0 === input3.colorSignificantUp || "string" === typeof input3.colorSignificantUp) && (void 0 === input3.colorSignificantDown || "string" === typeof input3.colorSignificantDown) && (void 0 === input3.colorNonsignificant || "string" === typeof input3.colorNonsignificant) && (void 0 === input3.dotRadius || "number" === typeof input3.dotRadius) && (void 0 === input3.maxInteractiveDots || "number" === typeof input3.maxInteractiveDots);
24
+ const $io1 = (input3) => "object" === typeof input3.significanceThresholds && null !== input3.significanceThresholds && $io2(input3.significanceThresholds) && "number" === typeof input3.pixelWidth && "number" === typeof input3.pixelHeight && (void 0 === input3.colorSignificant || "string" === typeof input3.colorSignificant) && (void 0 === input3.colorSignificantUp || "string" === typeof input3.colorSignificantUp) && (void 0 === input3.colorSignificantDown || "string" === typeof input3.colorSignificantDown) && (void 0 === input3.colorNonsignificant || "string" === typeof input3.colorNonsignificant) && (void 0 === input3.dotRadius || "number" === typeof input3.dotRadius) && (void 0 === input3.maxInteractiveDots || "number" === typeof input3.maxInteractiveDots) && (void 0 === input3.devicePixelRatio || "number" === typeof input3.devicePixelRatio);
25
25
  const $io2 = (input3) => "number" === typeof input3.pValueCutoff && ("adjusted" === input3.pValueType || "original" === input3.pValueType) && "number" === typeof input3.foldChangeCutoff;
26
26
  return "object" === typeof input2 && null !== input2 && $io0(input2);
27
27
  };
@@ -93,6 +93,10 @@ var validDiffMethRequest = (input) => {
93
93
  path: _path2 + ".maxInteractiveDots",
94
94
  expected: "(number | undefined)",
95
95
  value: input3.maxInteractiveDots
96
+ }), void 0 === input3.devicePixelRatio || "number" === typeof input3.devicePixelRatio || $report(_exceptionable2, {
97
+ path: _path2 + ".devicePixelRatio",
98
+ expected: "(number | undefined)",
99
+ value: input3.devicePixelRatio
96
100
  })].every((flag) => flag);
97
101
  const $vo2 = (input3, _path2, _exceptionable2 = true) => ["number" === typeof input3.pValueCutoff || $report(_exceptionable2, {
98
102
  path: _path2 + ".pValueCutoff",
package/dist/deleteWSITileSelection.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  deleteWSITileSelectionPayload,
3
3
  validDeleteWSITileSelectionRequest,
4
4
  validDeleteWSITileSelectionResponse
5
- } from "./chunk-ULKGA7YY.js";
5
+ } from "./chunk-P3WBZJFF.js";
6
6
  import "./chunk-YNHC5SXO.js";
7
7
  export {
8
8
  deleteWSITileSelectionPayload,
package/dist/genesetEnrichment.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  genesetEnrichmentPayload,
3
3
  validGenesetEnrichmentRequest,
4
4
  validGenesetEnrichmentResponse
5
- } from "./chunk-AGMCAWBR.js";
5
+ } from "./chunk-SLXGWQZ4.js";
6
6
  import "./chunk-YNHC5SXO.js";
7
7
  export {
8
8
  genesetEnrichmentPayload,
package/dist/index.js CHANGED
@@ -45,7 +45,7 @@ import {
45
45
  termdbSingleCellDEgenesPayload,
46
46
  validTermdbSingleCellDEgenesRequest,
47
47
  validTermdbSingleCellDEgenesResponse
48
- } from "./chunk-BZVFHGN3.js";
48
+ } from "./chunk-GCJESMM2.js";
49
49
  import {
50
50
  termdbSingleCellDataPayload,
51
51
  validTermdbSingleCellDataRequest,
@@ -121,7 +121,7 @@ import {
121
121
  dapVolcanoPayload,
122
122
  validDapVolcanoRequest,
123
123
  validDapVolcanoResponse
124
- } from "./chunk-QNH3PKJK.js";
124
+ } from "./chunk-TLZ5ROOU.js";
125
125
  import {
126
126
  descrStatsPayload,
127
127
  validDescrStatsRequest,
@@ -131,7 +131,7 @@ import {
131
131
  diffMethPayload,
132
132
  validDiffMethRequest,
133
133
  validDiffMethResponse
134
- } from "./chunk-JDF7A2LY.js";
134
+ } from "./chunk-UDTEGP3G.js";
135
135
  import {
136
136
  TermdbDmrPayload,
137
137
  validTermdbDmrRequest,
@@ -156,7 +156,7 @@ import {
156
156
  saveWSIAnnotationPayload,
157
157
  validSaveWSIAnnotationRequest,
158
158
  validSaveWSIAnnotationResponse
159
- } from "./chunk-YW5G4M5D.js";
159
+ } from "./chunk-2X36CBQF.js";
160
160
  import {
161
161
  snpPayload,
162
162
  validSnpRequest,
@@ -166,7 +166,7 @@ import {
166
166
  diffExpPayload,
167
167
  validDERequest,
168
168
  validDEResponse
169
- } from "./chunk-G4MMYXP6.js";
169
+ } from "./chunk-HD3J5BKM.js";
170
170
  import {
171
171
  termdbCategoriesPayload,
172
172
  validCategoriesRequest,
@@ -225,7 +225,7 @@ import {
225
225
  sampleWSImagesPayload,
226
226
  validSampleWSImagesRequest,
227
227
  validSampleWSImagesResponse
228
- } from "./chunk-VJB6F2HL.js";
228
+ } from "./chunk-CWACV4MW.js";
229
229
  import {
230
230
  gdcMafPayload,
231
231
  validGdcMafRequest,
@@ -245,7 +245,7 @@ import {
245
245
  genesetEnrichmentPayload,
246
246
  validGenesetEnrichmentRequest,
247
247
  validGenesetEnrichmentResponse
248
- } from "./chunk-AGMCAWBR.js";
248
+ } from "./chunk-SLXGWQZ4.js";
249
249
  import {
250
250
  genesetOverrepresentationPayload,
251
251
  validGenesetOverrepresentationRequest,
@@ -287,7 +287,7 @@ import {
287
287
  deleteWSITileSelectionPayload,
288
288
  validDeleteWSITileSelectionRequest,
289
289
  validDeleteWSITileSelectionResponse
290
- } from "./chunk-ULKGA7YY.js";
290
+ } from "./chunk-P3WBZJFF.js";
291
291
  import {
292
292
  dsDataPayload,
293
293
  validDsDataRequest,
@@ -315,7 +315,7 @@ import {
315
315
  aiProjectSelectedWSImagesResponsePayload,
316
316
  validAiProjectSelectedWSImagesRequest,
317
317
  validAiProjectSelectedWSImagesResponse
318
- } from "./chunk-DUCWIRPX.js";
318
+ } from "./chunk-KXYFG2HO.js";
319
319
  import {
320
320
  aiProjectTrainModelPayload,
321
321
  validAIProjectTrainModelRequest,
package/dist/samplewsimages.js CHANGED
@@ -3,7 +3,7 @@ import {
3
3
  sampleWSImagesPayload,
4
4
  validSampleWSImagesRequest,
5
5
  validSampleWSImagesResponse
6
- } from "./chunk-VJB6F2HL.js";
6
+ } from "./chunk-CWACV4MW.js";
7
7
  import "./chunk-YNHC5SXO.js";
8
8
  export {
9
9
  WSImage,
package/dist/saveWSIAnnotation.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  saveWSIAnnotationPayload,
3
3
  validSaveWSIAnnotationRequest,
4
4
  validSaveWSIAnnotationResponse
5
- } from "./chunk-YW5G4M5D.js";
5
+ } from "./chunk-2X36CBQF.js";
6
6
  import "./chunk-YNHC5SXO.js";
7
7
  export {
8
8
  saveWSIAnnotationPayload,
package/dist/termdb.DE.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  diffExpPayload,
3
3
  validDERequest,
4
4
  validDEResponse
5
- } from "./chunk-G4MMYXP6.js";
5
+ } from "./chunk-HD3J5BKM.js";
6
6
  import "./chunk-YNHC5SXO.js";
7
7
  export {
8
8
  diffExpPayload,
package/dist/termdb.dapVolcano.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  dapVolcanoPayload,
3
3
  validDapVolcanoRequest,
4
4
  validDapVolcanoResponse
5
- } from "./chunk-QNH3PKJK.js";
5
+ } from "./chunk-TLZ5ROOU.js";
6
6
  import "./chunk-YNHC5SXO.js";
7
7
  export {
8
8
  dapVolcanoPayload,
package/dist/termdb.diffMeth.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  diffMethPayload,
3
3
  validDiffMethRequest,
4
4
  validDiffMethResponse
5
- } from "./chunk-JDF7A2LY.js";
5
+ } from "./chunk-UDTEGP3G.js";
6
6
  import "./chunk-YNHC5SXO.js";
7
7
  export {
8
8
  diffMethPayload,
package/dist/termdb.singlecellDEgenes.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  termdbSingleCellDEgenesPayload,
3
3
  validTermdbSingleCellDEgenesRequest,
4
4
  validTermdbSingleCellDEgenesResponse
5
- } from "./chunk-BZVFHGN3.js";
5
+ } from "./chunk-GCJESMM2.js";
6
6
  import "./chunk-YNHC5SXO.js";
7
7
  export {
8
8
  termdbSingleCellDEgenesPayload,
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@sjcrh/proteinpaint-types",
3
- "version": "2.188.0",
3
+ "version": "2.189.0",
4
4
  "type": "module",
5
5
  "description": "Shared type definitions between ProteinPaint server and client code",
6
6
  "main": "src/index.ts",
package/src/dataset.ts CHANGED
@@ -169,7 +169,7 @@ type DictApi = {
169
169
  // helpers at ds.cohort.termdb.q{}
170
170
  build?: (ds: any) => void
171
171
  // gets dictionary term data
172
- get?: (twLst: any) => void
172
+ get?: (q: any, twLst: any, onlyChildren?: boolean, useCache?: boolean) => void
173
173
  }
174
174
 
175
175
  type SnvIndelFormat = {
@@ -845,7 +845,7 @@ export type SingleCellSamples = {
845
845
 
846
846
  type SingleCellDataBase = {
847
847
  /** when a sample has multiple tsne plots, this flag allows allows all plots to share one cell type legend */
848
- sameLegend: boolean
848
+ sameLegend?: boolean
849
849
  /** name of ref cells? */
850
850
  refName?: string
851
851
  /** dynamically added getter */
@@ -1743,6 +1743,8 @@ keep this setting here for reason of:
1743
1743
  getAdditionalFilter?: (__protected__: any, term: any) => Filter | undefined
1744
1744
  /** collections of dictionary terms (numeric or categorical) that are related and can be used together in some plots */
1745
1745
  termCollections?: TermCollection[]
1746
+ /** whether to set onlyChildren in getData() */
1747
+ setOnlyChildren?: true
1746
1748
  }
1747
1749
 
1748
1750
  type TermCollectionBase = {
package/src/routes/aiProjectSelectedWSImages.ts CHANGED
@@ -1,6 +1,6 @@
1
1
  import type { RoutePayload } from './routeApi.ts'
2
2
  import type { WSImage } from './samplewsimages.ts'
3
- import type { FlagStatus } from '#shared/devTs'
3
+ import type { FlagStatusValues } from '#shared/devTs'
4
4
 
5
5
  export type AiProjectSelectedWSImagesRequest = {
6
6
  genome: string
@@ -15,7 +15,7 @@ export type AiProjectSelectedWSImagesResponse = {
15
15
  }
16
16
 
17
17
  export interface FlagPredictionInfo {
18
- flag: FlagStatus
18
+ flag: FlagStatusValues
19
19
  timestamp: string
20
20
  }
21
21
 
@@ -23,14 +23,13 @@ export interface FlagPredictionInfo {
23
23
  export interface TileSelection {
24
24
  zoomCoordinates: [number, number]
25
25
  class?: string
26
- flag: FlagStatus
26
+ flag: FlagStatusValues
27
27
  id: string
28
28
  timestamp: string
29
29
  }
30
30
 
31
31
  export interface Annotation extends TileSelection {
32
32
  class: string
33
- status: number
34
33
  }
35
34
 
36
35
  export interface Prediction extends TileSelection {
package/src/routes/termdb.DE.ts CHANGED
@@ -62,6 +62,12 @@ export type VolcanoRenderRequest = {
62
62
  * The server still renders every row into `volcanoPng`; this only caps the
63
63
  * interactive list. Capped to the most-significant rows (smallest p-value). */
64
64
  maxInteractiveDots?: number
65
+ /** Hi-DPI scale factor from `window.devicePixelRatio` (e.g. 2.0 on retina).
66
+ * The PNG is rasterized at `pixelWidth*dpr × pixelHeight*dpr` device pixels
67
+ * but reported (and rendered in the SVG) at the CSS-space dimensions, so
68
+ * the browser uses the extra resolution for sharpness. Defaults to 1.0
69
+ * server-side. */
70
+ devicePixelRatio?: number
65
71
  }
66
72
 
67
73
  /** Everything the client needs to draw one volcano: the pre-rendered PNG of