@sjcrh/proteinpaint-types 2.186.0 → 2.188.0

package/src/routes/termdb.profileForms2Scores.ts

@@ -0,0 +1,25 @@
+import type { RoutePayload } from './routeApi.js'
+
+export type ProfileForms2ScoresRequest = {
+	// q is optional: term wrappers from getMultivalueTWs() carry no q field,
+	// and JSON.stringify drops `q: undefined`, so the field may be absent on the wire.
+	scoreTerms: { term: { id: string }; q?: any }[]
+	scScoreTerms?: { term: { id: string }; q?: any }[]
+	filter?: any
+	filterByUserSites?: boolean
+}
+
+export type ProfileForms2ScoresResponse = {
+	term2Score: { [termId: string]: { [category: string]: number } }
+	sites: { label: string; value: string }[]
+	n: number
+}
+
+export const ProfileForms2ScoresPayload: RoutePayload = {
+	request: {
+		typeId: 'ProfileForms2ScoresRequest'
+	},
+	response: {
+		typeId: 'ProfileForms2ScoresResponse'
+	}
+}

package/src/routes/termdb.singlecellSamples.ts

@@ -17,7 +17,7 @@ export type SingleCellSample = {
 		sampleName: any
 		experimentID?: string
 	}[]
-
+	isMetaResult?: boolean // whether this sample is a meta result. if so, sample name is from plot.sampleId or plot.name and experimentID is not used
 	// a sample may have additional fields that will be displayed in table, see singleCell.samples.sampleColumns[]
 }
 

package/src/routes/termdb.topVariablyExpressedGenes.ts

@@ -24,11 +24,7 @@ export type TermdbTopVariablyExpressedGenesRequest = {
 	/** optional parameter defined in gdc dataset. not used for non-gdc ds */
 	min_median_log2_uqfpkm?: number
 	/** filter extreme values (in native implementation): true/false */
-	filter_extreme_values?: number
-	/** min_count of fpkm when filter_extreme_values (in native implementation) = true */
-	min_count?: number
-	/** min_total_count of fpkm when filter_extreme_values (in native implementation) = true */
-	min_total_count?: number
+	filter_extreme_values?: boolean | number
 	/** Filter type: variance/inter-quartile region (in native implementation) */
 	rank_type?: {
 		type: 'var' | 'iqr'
@@ -36,6 +32,8 @@ export type TermdbTopVariablyExpressedGenesRequest = {
 	filter?: Filter
 	/** JSON, optional GDC cohort filter to restrict cases */
 	filter0?: any //GdcFilter0
+	/** helps ds getter */
+	ds?: any
 }
 
 type ValidResponse = {

package/src/terms/proteomeAbundance.ts

@@ -21,7 +21,7 @@ export type ProteomeAbundanceTerm = NumericBaseTerm & {
 	bins?: PresetNumericBins
 	unit?: string
 	/** organism, assay and cohort this term belongs to */
-	proteomeDetails: ProteomeDetails
+	dataTypeDetails: ProteomeDetails
 }
 
 export type ProteomeAbundanceTW = NumTW & { term: ProteomeAbundanceTerm }