@sjcrh/proteinpaint-types 2.182.0 → 2.183.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (38) hide show
  1. package/dist/brainImaging.js +1 -1
  2. package/dist/{chunk-2QTCQFYE.js → chunk-2NINVZOB.js} +47 -11
  3. package/dist/{chunk-KNDCWQJD.js → chunk-2UNWSR7Y.js} +15 -3
  4. package/dist/{chunk-UBAJYDGK.js → chunk-734AZGID.js} +15 -3
  5. package/dist/{chunk-J55IQXT7.js → chunk-7ZYM6FC6.js} +15 -3
  6. package/dist/{chunk-UYKWZWCU.js → chunk-JYTPHVO2.js} +47 -11
  7. package/dist/{chunk-DDMUMMOL.js → chunk-LDLZU2QY.js} +15 -3
  8. package/dist/{chunk-C5ECCXOT.js → chunk-NF6RKK5E.js} +15 -3
  9. package/dist/{chunk-K6W2WEPW.js → chunk-NO3ZZD3L.js} +15 -3
  10. package/dist/{chunk-ZRTB7SRA.js → chunk-ONNT3XV7.js} +32 -8
  11. package/dist/{chunk-VUNM6QTX.js → chunk-QMEKJW2A.js} +15 -3
  12. package/dist/{chunk-URYAC364.js → chunk-R7BQWUIF.js} +15 -3
  13. package/dist/{chunk-ZKO7LMCC.js → chunk-TUM3OZ7K.js} +15 -3
  14. package/dist/{chunk-3DA4MJ2U.js → chunk-URG6BNUU.js} +15 -3
  15. package/dist/chunk-W3F3CLYP.js +61 -0
  16. package/dist/{chunk-45VA4Y6L.js → chunk-YDJG6VT4.js} +15 -3
  17. package/dist/correlationVolcano.js +1 -1
  18. package/dist/grin2.js +1 -1
  19. package/dist/index.js +31 -23
  20. package/dist/termdb.categories.js +1 -1
  21. package/dist/termdb.chat.js +15 -3
  22. package/dist/termdb.chat2.js +1 -1
  23. package/dist/termdb.cluster.js +1 -1
  24. package/dist/termdb.descrstats.js +1 -1
  25. package/dist/termdb.dmr.js +1 -1
  26. package/dist/termdb.numericcategories.js +1 -1
  27. package/dist/termdb.percentile.js +1 -1
  28. package/dist/termdb.proteome.js +11 -0
  29. package/dist/termdb.termsbyids.js +1 -1
  30. package/dist/termdb.topTermsByType.js +1 -1
  31. package/dist/termdb.topVariablyExpressedGenes.js +1 -1
  32. package/dist/termdb.violinBox.js +1 -1
  33. package/package.json +1 -1
  34. package/src/dataset.ts +28 -17
  35. package/src/index.ts +1 -0
  36. package/src/routes/termdb.proteome.ts +13 -0
  37. package/src/terms/dnaMethylation.ts +12 -3
  38. package/src/terms/termCollection.ts +7 -1
package/dist/{chunk-45VA4Y6L.js → chunk-YDJG6VT4.js} RENAMED
@@ -109,7 +109,7 @@ var validDescrStatsRequest = (input) => {
109
109
  const $io25 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "proteomeAbundance" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io11(input3.valueConversion)) && (void 0 === input3.continuousColorScale || "object" === typeof input3.continuousColorScale && null !== input3.continuousColorScale && $io12(input3.continuousColorScale)) && (void 0 === input3.unit || "string" === typeof input3.unit) && "string" === typeof input3.protein && (void 0 === input3.bins || "object" === typeof input3.bins && null !== input3.bins && $io13(input3.bins)) && ("object" === typeof input3.proteomeDetails && null !== input3.proteomeDetails && ("string" === typeof input3.proteomeDetails.assay && "string" === typeof input3.proteomeDetails.cohort));
110
110
  const $io27 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "date" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io11(input3.valueConversion)) && (void 0 === input3.continuousColorScale || "object" === typeof input3.continuousColorScale && null !== input3.continuousColorScale && $io12(input3.continuousColorScale)) && (void 0 === input3.unit || "string" === typeof input3.unit) && (void 0 === input3.bins || "object" === typeof input3.bins && null !== input3.bins && $io13(input3.bins));
111
111
  const $io28 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "ssGSEA" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io11(input3.valueConversion)) && (void 0 === input3.continuousColorScale || "object" === typeof input3.continuousColorScale && null !== input3.continuousColorScale && $io12(input3.continuousColorScale)) && (void 0 === input3.unit || "string" === typeof input3.unit) && (void 0 === input3.genes || Array.isArray(input3.genes) && input3.genes.every((elem) => "string" === typeof elem)) && (void 0 === input3.bins || "object" === typeof input3.bins && null !== input3.bins && $io13(input3.bins));
112
- const $io29 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "dnaMethylation" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io11(input3.valueConversion)) && (void 0 === input3.continuousColorScale || "object" === typeof input3.continuousColorScale && null !== input3.continuousColorScale && $io12(input3.continuousColorScale)) && (void 0 === input3.unit || "string" === typeof input3.unit) && "string" === typeof input3.chr && "number" === typeof input3.start && "number" === typeof input3.stop && (void 0 === input3.bins || "object" === typeof input3.bins && null !== input3.bins && $io13(input3.bins));
112
+ const $io29 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "dnaMethylation" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io11(input3.valueConversion)) && (void 0 === input3.continuousColorScale || "object" === typeof input3.continuousColorScale && null !== input3.continuousColorScale && $io12(input3.continuousColorScale)) && (void 0 === input3.unit || "string" === typeof input3.unit) && "string" === typeof input3.chr && "number" === typeof input3.start && "number" === typeof input3.stop && ("gene" === input3.genomicFeatureType || "promoter" === input3.genomicFeatureType || "region" === input3.genomicFeatureType || "enhancer" === input3.genomicFeatureType) && (void 0 === input3.bins || "object" === typeof input3.bins && null !== input3.bins && $io13(input3.bins));
113
113
  const $io30 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "singleCellGeneExpression" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io11(input3.valueConversion)) && (void 0 === input3.continuousColorScale || "object" === typeof input3.continuousColorScale && null !== input3.continuousColorScale && $io12(input3.continuousColorScale)) && (void 0 === input3.unit || "string" === typeof input3.unit) && "string" === typeof input3.gene && "string" === typeof input3.sample && (void 0 === input3.bins || "object" === typeof input3.bins && null !== input3.bins && $io13(input3.bins)) && (void 0 === input3.kind || "gene" === input3.kind) && (void 0 === input3.chr || "string" === typeof input3.chr) && (void 0 === input3.start || "number" === typeof input3.start) && (void 0 === input3.stop || "number" === typeof input3.stop);
114
114
  const $io31 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "singleCellGeneExpression" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io11(input3.valueConversion)) && (void 0 === input3.continuousColorScale || "object" === typeof input3.continuousColorScale && null !== input3.continuousColorScale && $io12(input3.continuousColorScale)) && (void 0 === input3.unit || "string" === typeof input3.unit) && "string" === typeof input3.gene && "string" === typeof input3.sample && (void 0 === input3.bins || "object" === typeof input3.bins && null !== input3.bins && $io13(input3.bins)) && (void 0 === input3.kind || "coord" === input3.kind) && "string" === typeof input3.chr && "number" === typeof input3.start && "number" === typeof input3.stop;
115
115
  const $io32 = (input3) => "number" === typeof input3.value && (void 0 === input3.label || "string" === typeof input3.label) && (void 0 === input3.name || "string" === typeof input3.name);
@@ -140,7 +140,7 @@ var validDescrStatsRequest = (input) => {
140
140
  const $io48 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "geneVariant" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io11(input3.valueConversion)) && "coord" === input3.kind && "string" === typeof input3.chr && "number" === typeof input3.start && "number" === typeof input3.stop && (Array.isArray(input3.genes) && input3.genes.every((elem) => "object" === typeof elem && null !== elem && $iu2(elem))) && (void 0 === input3.groupsetting || "object" === typeof input3.groupsetting && null !== input3.groupsetting && $io43(input3.groupsetting)) && (void 0 === input3.childTerms || Array.isArray(input3.childTerms) && input3.childTerms.every((elem) => "object" === typeof elem && null !== elem && $io39(elem)));
141
141
  const $io49 = (input3) => (void 0 === input3.key || "string" === typeof input3.key) && (void 0 === input3.label || "string" === typeof input3.label || "number" === typeof input3.label) && (void 0 === input3.value || "string" === typeof input3.value) && (void 0 === input3.dt || "number" === typeof input3.dt) && (void 0 === input3.mclasslst || Array.isArray(input3.mclasslst) && input3.mclasslst.every((elem) => "string" === typeof elem)) && (void 0 === input3.mclassExcludeLst || Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "string" === typeof elem)) && (void 0 === input3.origin || "string" === typeof input3.origin);
142
142
  const $io50 = (input3) => (void 0 === input3.join || "string" === typeof input3.join) && (void 0 === input3.isnot || "boolean" === typeof input3.isnot) && (void 0 === input3.bar_by_grade || "boolean" === typeof input3.bar_by_grade) && (void 0 === input3.bar_by_children || "boolean" === typeof input3.bar_by_children) && (void 0 === input3.value_by_max_grade || "boolean" === typeof input3.value_by_max_grade) && (void 0 === input3.value_by_most_recent || "boolean" === typeof input3.value_by_most_recent) && (void 0 === input3.value_by_computable_grade || "boolean" === typeof input3.value_by_computable_grade) && ("object" === typeof input3.term && null !== input3.term && $iu13(input3.term)) && "number" === typeof input3.ratio;
143
- const $io51 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "termCollection" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io11(input3.valueConversion)) && (void 0 === input3.termIds || Array.isArray(input3.termIds) && input3.termIds.every((elem) => "string" === typeof elem)) && (Array.isArray(input3.termlst) && input3.termlst.every((elem) => "object" === typeof elem && null !== elem && $io52(elem))) && (void 0 === input3.newTvs || "boolean" === typeof input3.newTvs) && ("object" === typeof input3.propsByTermId && null !== input3.propsByTermId && false === Array.isArray(input3.propsByTermId) && $io53(input3.propsByTermId)) && "numeric" === input3.memberType && (void 0 === input3.numerators || Array.isArray(input3.numerators) && input3.numerators.every((elem) => "string" === typeof elem)) && (void 0 === input3.valueTransform || "object" === typeof input3.valueTransform && null !== input3.valueTransform && false === Array.isArray(input3.valueTransform) && $io55(input3.valueTransform));
143
+ const $io51 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "termCollection" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io11(input3.valueConversion)) && (void 0 === input3.termIds || Array.isArray(input3.termIds) && input3.termIds.every((elem) => "string" === typeof elem)) && (Array.isArray(input3.termlst) && input3.termlst.every((elem) => "object" === typeof elem && null !== elem && $io52(elem))) && (void 0 === input3.newTvs || "boolean" === typeof input3.newTvs) && ("object" === typeof input3.propsByTermId && null !== input3.propsByTermId && false === Array.isArray(input3.propsByTermId) && $io53(input3.propsByTermId)) && (void 0 === input3.isCustom || "boolean" === typeof input3.isCustom) && "numeric" === input3.memberType && (void 0 === input3.numerators || Array.isArray(input3.numerators) && input3.numerators.every((elem) => "string" === typeof elem)) && (void 0 === input3.valueTransform || "object" === typeof input3.valueTransform && null !== input3.valueTransform && false === Array.isArray(input3.valueTransform) && $io55(input3.valueTransform));
144
144
  const $io52 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "string" === typeof input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io11(input3.valueConversion));
145
145
  const $io53 = (input3) => Object.keys(input3).every((key) => {
146
146
  const value = input3[key];
@@ -159,7 +159,7 @@ var validDescrStatsRequest = (input) => {
159
159
  return true;
160
160
  });
161
161
  const $io55 = (input3) => void 0 === input3.offset || "number" === typeof input3.offset;
162
- const $io56 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "termCollection" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io11(input3.valueConversion)) && (void 0 === input3.termIds || Array.isArray(input3.termIds) && input3.termIds.every((elem) => "string" === typeof elem)) && (Array.isArray(input3.termlst) && input3.termlst.every((elem) => "object" === typeof elem && null !== elem && $io52(elem))) && (void 0 === input3.newTvs || "boolean" === typeof input3.newTvs) && ("object" === typeof input3.propsByTermId && null !== input3.propsByTermId && false === Array.isArray(input3.propsByTermId) && $io53(input3.propsByTermId)) && "categorical" === input3.memberType && (Array.isArray(input3.categoryKeys) && input3.categoryKeys.every((elem) => "object" === typeof elem && null !== elem && $io57(elem)));
162
+ const $io56 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "termCollection" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io11(input3.valueConversion)) && (void 0 === input3.termIds || Array.isArray(input3.termIds) && input3.termIds.every((elem) => "string" === typeof elem)) && (Array.isArray(input3.termlst) && input3.termlst.every((elem) => "object" === typeof elem && null !== elem && $io52(elem))) && (void 0 === input3.newTvs || "boolean" === typeof input3.newTvs) && ("object" === typeof input3.propsByTermId && null !== input3.propsByTermId && false === Array.isArray(input3.propsByTermId) && $io53(input3.propsByTermId)) && (void 0 === input3.isCustom || "boolean" === typeof input3.isCustom) && "categorical" === input3.memberType && (Array.isArray(input3.categoryKeys) && input3.categoryKeys.every((elem) => "object" === typeof elem && null !== elem && $io57(elem)));
163
163
  const $io57 = (input3) => "string" === typeof input3.key && "boolean" === typeof input3.shown;
164
164
  const $io58 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "snp" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io11(input3.valueConversion)) && "string" === typeof input3.chr && "number" === typeof input3.start && "number" === typeof input3.stop && "string" === typeof input3.ref && (Array.isArray(input3.alt) && input3.alt.every((elem) => "string" === typeof elem)) && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $io43(input3.groupsetting));
165
165
  const $io59 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "singleCellCellType" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io11(input3.valueConversion)) && ("object" === typeof input3.sample && null !== input3.sample && true) && "string" === typeof input3.plot && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $io43(input3.groupsetting));
@@ -2056,6 +2056,10 @@ var validDescrStatsRequest = (input) => {
2056
2056
  path: _path2 + ".stop",
2057
2057
  expected: "number",
2058
2058
  value: input3.stop
2059
+ }), "gene" === input3.genomicFeatureType || "promoter" === input3.genomicFeatureType || "region" === input3.genomicFeatureType || "enhancer" === input3.genomicFeatureType || $report(_exceptionable2, {
2060
+ path: _path2 + ".genomicFeatureType",
2061
+ expected: '("enhancer" | "gene" | "promoter" | "region")',
2062
+ value: input3.genomicFeatureType
2059
2063
  }), void 0 === input3.bins || ("object" === typeof input3.bins && null !== input3.bins || $report(_exceptionable2, {
2060
2064
  path: _path2 + ".bins",
2061
2065
  expected: "(PresetNumericBins | undefined)",
@@ -3339,6 +3343,10 @@ var validDescrStatsRequest = (input) => {
3339
3343
  path: _path2 + ".propsByTermId",
3340
3344
  expected: "__type.o8",
3341
3345
  value: input3.propsByTermId
3346
+ }), void 0 === input3.isCustom || "boolean" === typeof input3.isCustom || $report(_exceptionable2, {
3347
+ path: _path2 + ".isCustom",
3348
+ expected: "(boolean | undefined)",
3349
+ value: input3.isCustom
3342
3350
  }), "numeric" === input3.memberType || $report(_exceptionable2, {
3343
3351
  path: _path2 + ".memberType",
3344
3352
  expected: '"numeric"',
@@ -3562,6 +3570,10 @@ var validDescrStatsRequest = (input) => {
3562
3570
  path: _path2 + ".propsByTermId",
3563
3571
  expected: "__type.o8",
3564
3572
  value: input3.propsByTermId
3573
+ }), void 0 === input3.isCustom || "boolean" === typeof input3.isCustom || $report(_exceptionable2, {
3574
+ path: _path2 + ".isCustom",
3575
+ expected: "(boolean | undefined)",
3576
+ value: input3.isCustom
3565
3577
  }), "categorical" === input3.memberType || $report(_exceptionable2, {
3566
3578
  path: _path2 + ".memberType",
3567
3579
  expected: '"categorical"',
package/dist/correlationVolcano.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  CorrelationVolcanoPayload,
3
3
  validCorrelationVolcanoRequest,
4
4
  validCorrelationVolcanoResponse
5
- } from "./chunk-URYAC364.js";
5
+ } from "./chunk-R7BQWUIF.js";
6
6
  import "./chunk-YNHC5SXO.js";
7
7
  export {
8
8
  CorrelationVolcanoPayload,
package/dist/grin2.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  GRIN2Payload,
3
3
  validGRIN2Request,
4
4
  validGRIN2Response
5
- } from "./chunk-UBAJYDGK.js";
5
+ } from "./chunk-734AZGID.js";
6
6
  import "./chunk-YNHC5SXO.js";
7
7
  export {
8
8
  GRIN2Payload,
package/dist/index.js CHANGED
@@ -1,3 +1,8 @@
1
+ import {
2
+ validViolinBoxRequest,
3
+ validViolinBoxResponse,
4
+ violinBoxPayload
5
+ } from "./chunk-NF6RKK5E.js";
1
6
  import {
2
7
  tilePayload,
3
8
  validTileRequest,
@@ -13,6 +18,11 @@ import {
13
18
  validWSISamplesResponse,
14
19
  wsiSamplesPayload
15
20
  } from "./chunk-2744ACBX.js";
21
+ import {
22
+ termdbSingleCellDEgenesPayload,
23
+ validTermdbSingleCellDEgenesRequest,
24
+ validTermdbSingleCellDEgenesResponse
25
+ } from "./chunk-3EVYVWI2.js";
16
26
  import {
17
27
  termdbSingleCellDataPayload,
18
28
  validTermdbSingleCellDataRequest,
@@ -32,7 +42,7 @@ import {
32
42
  termsByIdsPayload,
33
43
  validTermsByIdsRequest,
34
44
  validTermsByIdsResponse
35
- } from "./chunk-3DA4MJ2U.js";
45
+ } from "./chunk-URG6BNUU.js";
36
46
  import {
37
47
  topMutatedGenePayload,
38
48
  validtopMutatedGeneRequest,
@@ -42,17 +52,12 @@ import {
42
52
  termdbTopTermsByTypePayload,
43
53
  validTermdbTopTermsByTypeRequest,
44
54
  validTermdbTopTermsByTypeResponse
45
- } from "./chunk-2QTCQFYE.js";
55
+ } from "./chunk-2NINVZOB.js";
46
56
  import {
47
57
  termdbTopVariablyExpressedGenesPayload,
48
58
  validTermdbTopVariablyExpressedGenesRequest,
49
59
  validTermdbTopVariablyExpressedGenesResponse
50
- } from "./chunk-VUNM6QTX.js";
51
- import {
52
- validViolinBoxRequest,
53
- validViolinBoxResponse,
54
- violinBoxPayload
55
- } from "./chunk-C5ECCXOT.js";
60
+ } from "./chunk-QMEKJW2A.js";
56
61
  import {
57
62
  ProfileFormScoresPayload,
58
63
  validProfileFormScoresRequest,
@@ -63,6 +68,11 @@ import {
63
68
  validProfileScoresRequest,
64
69
  validProfileScoresResponse
65
70
  } from "./chunk-MHDQO7R5.js";
71
+ import {
72
+ termdbProteomePayload,
73
+ validTermdbProteomeRequest,
74
+ validTermdbProteomeResponse
75
+ } from "./chunk-W3F3CLYP.js";
66
76
  import {
67
77
  rootTermPayload,
68
78
  validRootTermRequest,
@@ -88,11 +98,6 @@ import {
88
98
  validTermdbSingleSampleMutationRequest,
89
99
  validTermdbSingleSampleMutationResponse
90
100
  } from "./chunk-5L4VF3ZL.js";
91
- import {
92
- termdbSingleCellDEgenesPayload,
93
- validTermdbSingleCellDEgenesRequest,
94
- validTermdbSingleCellDEgenesResponse
95
- } from "./chunk-3EVYVWI2.js";
96
101
  import {
97
102
  termdbCohortsPayload,
98
103
  validTermdbCohortsRequest,
@@ -102,7 +107,7 @@ import {
102
107
  descrStatsPayload,
103
108
  validDescrStatsRequest,
104
109
  validDescrStatsResponse
105
- } from "./chunk-45VA4Y6L.js";
110
+ } from "./chunk-YDJG6VT4.js";
106
111
  import {
107
112
  diffMethPayload,
108
113
  validDiffMethRequest,
@@ -112,7 +117,7 @@ import {
112
117
  TermdbDmrPayload,
113
118
  validTermdbDmrRequest,
114
119
  validTermdbDmrResponse
115
- } from "./chunk-K6W2WEPW.js";
120
+ } from "./chunk-NO3ZZD3L.js";
116
121
  import {
117
122
  FilterTermValuesPayload,
118
123
  validFilterTermValuesRequest,
@@ -127,12 +132,12 @@ import {
127
132
  numericCategoriesPayload,
128
133
  validNumericCategoriesRequest,
129
134
  validNumericCategoriesResponse
130
- } from "./chunk-DDMUMMOL.js";
135
+ } from "./chunk-LDLZU2QY.js";
131
136
  import {
132
137
  percentilePayload,
133
138
  validPercentileRequest,
134
139
  validPercentileResponse
135
- } from "./chunk-ZRTB7SRA.js";
140
+ } from "./chunk-ONNT3XV7.js";
136
141
  import {
137
142
  saveWSIAnnotationPayload,
138
143
  validSaveWSIAnnotationRequest,
@@ -152,11 +157,11 @@ import {
152
157
  termdbCategoriesPayload,
153
158
  validCategoriesRequest,
154
159
  validCategoriesResponse
155
- } from "./chunk-KNDCWQJD.js";
160
+ } from "./chunk-2UNWSR7Y.js";
156
161
  import {
157
162
  validChatRequest,
158
163
  validChatResponse
159
- } from "./chunk-ZKO7LMCC.js";
164
+ } from "./chunk-TUM3OZ7K.js";
160
165
  import {
161
166
  ChatPayload
162
167
  } from "./chunk-FRXRNCDV.js";
@@ -164,7 +169,7 @@ import {
164
169
  termdbClusterPayload,
165
170
  validTermdbClusterRequest,
166
171
  validTermdbClusterResponse
167
- } from "./chunk-UYKWZWCU.js";
172
+ } from "./chunk-JYTPHVO2.js";
168
173
  import {
169
174
  termdbCohortSummaryPayload,
170
175
  validTermdbCohortSummaryRequest,
@@ -234,7 +239,7 @@ import {
234
239
  GRIN2Payload,
235
240
  validGRIN2Request,
236
241
  validGRIN2Response
237
- } from "./chunk-UBAJYDGK.js";
242
+ } from "./chunk-734AZGID.js";
238
243
  import {
239
244
  healthcheckPayload,
240
245
  validHealthCheckRequest,
@@ -256,7 +261,7 @@ import {
256
261
  CorrelationVolcanoPayload,
257
262
  validCorrelationVolcanoRequest,
258
263
  validCorrelationVolcanoResponse
259
- } from "./chunk-URYAC364.js";
264
+ } from "./chunk-R7BQWUIF.js";
260
265
  import {
261
266
  datasetPayload,
262
267
  validDatasetRequest,
@@ -314,7 +319,7 @@ import {
314
319
  brainImagingPayload,
315
320
  validBrainImagingRequest,
316
321
  validBrainImagingResponse
317
- } from "./chunk-J55IQXT7.js";
322
+ } from "./chunk-7ZYM6FC6.js";
318
323
  import {
319
324
  brainImagingSamplesPayload,
320
325
  validBrainImagingSamplesRequest,
@@ -378,6 +383,7 @@ export {
378
383
  termdbClusterPayload,
379
384
  termdbCohortSummaryPayload,
380
385
  termdbCohortsPayload,
386
+ termdbProteomePayload,
381
387
  termdbSampleImagesPayload,
382
388
  termdbSampleScatterPayload,
383
389
  termdbSingleCellDEgenesPayload,
@@ -485,6 +491,8 @@ export {
485
491
  validTermdbDmrResponse,
486
492
  validTermdbIsoformAvailabilityRequest,
487
493
  validTermdbIsoformAvailabilityResponse,
494
+ validTermdbProteomeRequest,
495
+ validTermdbProteomeResponse,
488
496
  validTermdbSampleImagesRequest,
489
497
  validTermdbSampleImagesResponse,
490
498
  validTermdbSampleScatterRequest,
package/dist/termdb.categories.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  termdbCategoriesPayload,
3
3
  validCategoriesRequest,
4
4
  validCategoriesResponse
5
- } from "./chunk-KNDCWQJD.js";
5
+ } from "./chunk-2UNWSR7Y.js";
6
6
  import "./chunk-YNHC5SXO.js";
7
7
  export {
8
8
  termdbCategoriesPayload,
package/dist/termdb.chat.js CHANGED
@@ -59,7 +59,7 @@ var validChatRequest = (input) => {
59
59
  const $io28 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "proteomeAbundance" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io5(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io7(input3.valueConversion)) && (void 0 === input3.continuousColorScale || "object" === typeof input3.continuousColorScale && null !== input3.continuousColorScale && $io15(input3.continuousColorScale)) && (void 0 === input3.unit || "string" === typeof input3.unit) && "string" === typeof input3.protein && (void 0 === input3.bins || "object" === typeof input3.bins && null !== input3.bins && $io16(input3.bins)) && ("object" === typeof input3.proteomeDetails && null !== input3.proteomeDetails && ("string" === typeof input3.proteomeDetails.assay && "string" === typeof input3.proteomeDetails.cohort));
60
60
  const $io30 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "date" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io5(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io7(input3.valueConversion)) && (void 0 === input3.continuousColorScale || "object" === typeof input3.continuousColorScale && null !== input3.continuousColorScale && $io15(input3.continuousColorScale)) && (void 0 === input3.unit || "string" === typeof input3.unit) && (void 0 === input3.bins || "object" === typeof input3.bins && null !== input3.bins && $io16(input3.bins));
61
61
  const $io31 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "ssGSEA" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io5(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io7(input3.valueConversion)) && (void 0 === input3.continuousColorScale || "object" === typeof input3.continuousColorScale && null !== input3.continuousColorScale && $io15(input3.continuousColorScale)) && (void 0 === input3.unit || "string" === typeof input3.unit) && (void 0 === input3.genes || Array.isArray(input3.genes) && input3.genes.every((elem) => "string" === typeof elem)) && (void 0 === input3.bins || "object" === typeof input3.bins && null !== input3.bins && $io16(input3.bins));
62
- const $io32 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "dnaMethylation" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io5(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io7(input3.valueConversion)) && (void 0 === input3.continuousColorScale || "object" === typeof input3.continuousColorScale && null !== input3.continuousColorScale && $io15(input3.continuousColorScale)) && (void 0 === input3.unit || "string" === typeof input3.unit) && "string" === typeof input3.chr && "number" === typeof input3.start && "number" === typeof input3.stop && (void 0 === input3.bins || "object" === typeof input3.bins && null !== input3.bins && $io16(input3.bins));
62
+ const $io32 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "dnaMethylation" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io5(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io7(input3.valueConversion)) && (void 0 === input3.continuousColorScale || "object" === typeof input3.continuousColorScale && null !== input3.continuousColorScale && $io15(input3.continuousColorScale)) && (void 0 === input3.unit || "string" === typeof input3.unit) && "string" === typeof input3.chr && "number" === typeof input3.start && "number" === typeof input3.stop && ("gene" === input3.genomicFeatureType || "promoter" === input3.genomicFeatureType || "region" === input3.genomicFeatureType || "enhancer" === input3.genomicFeatureType) && (void 0 === input3.bins || "object" === typeof input3.bins && null !== input3.bins && $io16(input3.bins));
63
63
  const $io33 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "singleCellGeneExpression" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io5(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io7(input3.valueConversion)) && (void 0 === input3.continuousColorScale || "object" === typeof input3.continuousColorScale && null !== input3.continuousColorScale && $io15(input3.continuousColorScale)) && (void 0 === input3.unit || "string" === typeof input3.unit) && "string" === typeof input3.gene && "string" === typeof input3.sample && (void 0 === input3.bins || "object" === typeof input3.bins && null !== input3.bins && $io16(input3.bins)) && (void 0 === input3.kind || "gene" === input3.kind) && (void 0 === input3.chr || "string" === typeof input3.chr) && (void 0 === input3.start || "number" === typeof input3.start) && (void 0 === input3.stop || "number" === typeof input3.stop);
64
64
  const $io34 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "singleCellGeneExpression" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io5(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io7(input3.valueConversion)) && (void 0 === input3.continuousColorScale || "object" === typeof input3.continuousColorScale && null !== input3.continuousColorScale && $io15(input3.continuousColorScale)) && (void 0 === input3.unit || "string" === typeof input3.unit) && "string" === typeof input3.gene && "string" === typeof input3.sample && (void 0 === input3.bins || "object" === typeof input3.bins && null !== input3.bins && $io16(input3.bins)) && (void 0 === input3.kind || "coord" === input3.kind) && "string" === typeof input3.chr && "number" === typeof input3.start && "number" === typeof input3.stop;
65
65
  const $io35 = (input3) => "number" === typeof input3.value && (void 0 === input3.label || "string" === typeof input3.label) && (void 0 === input3.name || "string" === typeof input3.name);
@@ -85,7 +85,7 @@ var validChatRequest = (input) => {
85
85
  const $io46 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "geneVariant" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io5(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io7(input3.valueConversion)) && "coord" === input3.kind && "string" === typeof input3.chr && "number" === typeof input3.start && "number" === typeof input3.stop && (Array.isArray(input3.genes) && input3.genes.every((elem) => "object" === typeof elem && null !== elem && $iu3(elem))) && (void 0 === input3.groupsetting || "object" === typeof input3.groupsetting && null !== input3.groupsetting && $io8(input3.groupsetting)) && (void 0 === input3.childTerms || Array.isArray(input3.childTerms) && input3.childTerms.every((elem) => "object" === typeof elem && null !== elem && $io42(elem)));
86
86
  const $io47 = (input3) => (void 0 === input3.key || "string" === typeof input3.key) && (void 0 === input3.label || "string" === typeof input3.label || "number" === typeof input3.label) && (void 0 === input3.value || "string" === typeof input3.value) && (void 0 === input3.dt || "number" === typeof input3.dt) && (void 0 === input3.mclasslst || Array.isArray(input3.mclasslst) && input3.mclasslst.every((elem) => "string" === typeof elem)) && (void 0 === input3.mclassExcludeLst || Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "string" === typeof elem)) && (void 0 === input3.origin || "string" === typeof input3.origin);
87
87
  const $io48 = (input3) => (void 0 === input3.join || "string" === typeof input3.join) && (void 0 === input3.isnot || "boolean" === typeof input3.isnot) && (void 0 === input3.bar_by_grade || "boolean" === typeof input3.bar_by_grade) && (void 0 === input3.bar_by_children || "boolean" === typeof input3.bar_by_children) && (void 0 === input3.value_by_max_grade || "boolean" === typeof input3.value_by_max_grade) && (void 0 === input3.value_by_most_recent || "boolean" === typeof input3.value_by_most_recent) && (void 0 === input3.value_by_computable_grade || "boolean" === typeof input3.value_by_computable_grade) && ("object" === typeof input3.term && null !== input3.term && $iu11(input3.term)) && "number" === typeof input3.ratio;
88
- const $io49 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "termCollection" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io5(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io7(input3.valueConversion)) && (void 0 === input3.termIds || Array.isArray(input3.termIds) && input3.termIds.every((elem) => "string" === typeof elem)) && (Array.isArray(input3.termlst) && input3.termlst.every((elem) => "object" === typeof elem && null !== elem && $io50(elem))) && (void 0 === input3.newTvs || "boolean" === typeof input3.newTvs) && ("object" === typeof input3.propsByTermId && null !== input3.propsByTermId && false === Array.isArray(input3.propsByTermId) && $io51(input3.propsByTermId)) && "numeric" === input3.memberType && (void 0 === input3.numerators || Array.isArray(input3.numerators) && input3.numerators.every((elem) => "string" === typeof elem)) && (void 0 === input3.valueTransform || "object" === typeof input3.valueTransform && null !== input3.valueTransform && false === Array.isArray(input3.valueTransform) && $io53(input3.valueTransform));
88
+ const $io49 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "termCollection" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io5(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io7(input3.valueConversion)) && (void 0 === input3.termIds || Array.isArray(input3.termIds) && input3.termIds.every((elem) => "string" === typeof elem)) && (Array.isArray(input3.termlst) && input3.termlst.every((elem) => "object" === typeof elem && null !== elem && $io50(elem))) && (void 0 === input3.newTvs || "boolean" === typeof input3.newTvs) && ("object" === typeof input3.propsByTermId && null !== input3.propsByTermId && false === Array.isArray(input3.propsByTermId) && $io51(input3.propsByTermId)) && (void 0 === input3.isCustom || "boolean" === typeof input3.isCustom) && "numeric" === input3.memberType && (void 0 === input3.numerators || Array.isArray(input3.numerators) && input3.numerators.every((elem) => "string" === typeof elem)) && (void 0 === input3.valueTransform || "object" === typeof input3.valueTransform && null !== input3.valueTransform && false === Array.isArray(input3.valueTransform) && $io53(input3.valueTransform));
89
89
  const $io50 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "string" === typeof input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io5(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io7(input3.valueConversion));
90
90
  const $io51 = (input3) => Object.keys(input3).every((key) => {
91
91
  const value = input3[key];
@@ -104,7 +104,7 @@ var validChatRequest = (input) => {
104
104
  return true;
105
105
  });
106
106
  const $io53 = (input3) => void 0 === input3.offset || "number" === typeof input3.offset;
107
- const $io54 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "termCollection" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io5(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io7(input3.valueConversion)) && (void 0 === input3.termIds || Array.isArray(input3.termIds) && input3.termIds.every((elem) => "string" === typeof elem)) && (Array.isArray(input3.termlst) && input3.termlst.every((elem) => "object" === typeof elem && null !== elem && $io50(elem))) && (void 0 === input3.newTvs || "boolean" === typeof input3.newTvs) && ("object" === typeof input3.propsByTermId && null !== input3.propsByTermId && false === Array.isArray(input3.propsByTermId) && $io51(input3.propsByTermId)) && "categorical" === input3.memberType && (Array.isArray(input3.categoryKeys) && input3.categoryKeys.every((elem) => "object" === typeof elem && null !== elem && $io55(elem)));
107
+ const $io54 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "termCollection" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io5(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io7(input3.valueConversion)) && (void 0 === input3.termIds || Array.isArray(input3.termIds) && input3.termIds.every((elem) => "string" === typeof elem)) && (Array.isArray(input3.termlst) && input3.termlst.every((elem) => "object" === typeof elem && null !== elem && $io50(elem))) && (void 0 === input3.newTvs || "boolean" === typeof input3.newTvs) && ("object" === typeof input3.propsByTermId && null !== input3.propsByTermId && false === Array.isArray(input3.propsByTermId) && $io51(input3.propsByTermId)) && (void 0 === input3.isCustom || "boolean" === typeof input3.isCustom) && "categorical" === input3.memberType && (Array.isArray(input3.categoryKeys) && input3.categoryKeys.every((elem) => "object" === typeof elem && null !== elem && $io55(elem)));
108
108
  const $io55 = (input3) => "string" === typeof input3.key && "boolean" === typeof input3.shown;
109
109
  const $iu0 = (input3) => (() => {
110
110
  if ("tvslst" === input3.type)
@@ -1954,6 +1954,10 @@ var validChatRequest = (input) => {
1954
1954
  path: _path2 + ".stop",
1955
1955
  expected: "number",
1956
1956
  value: input3.stop
1957
+ }), "gene" === input3.genomicFeatureType || "promoter" === input3.genomicFeatureType || "region" === input3.genomicFeatureType || "enhancer" === input3.genomicFeatureType || $report(_exceptionable2, {
1958
+ path: _path2 + ".genomicFeatureType",
1959
+ expected: '("enhancer" | "gene" | "promoter" | "region")',
1960
+ value: input3.genomicFeatureType
1957
1961
  }), void 0 === input3.bins || ("object" === typeof input3.bins && null !== input3.bins || $report(_exceptionable2, {
1958
1962
  path: _path2 + ".bins",
1959
1963
  expected: "(PresetNumericBins | undefined)",
@@ -3124,6 +3128,10 @@ var validChatRequest = (input) => {
3124
3128
  path: _path2 + ".propsByTermId",
3125
3129
  expected: "__type.o7",
3126
3130
  value: input3.propsByTermId
3131
+ }), void 0 === input3.isCustom || "boolean" === typeof input3.isCustom || $report(_exceptionable2, {
3132
+ path: _path2 + ".isCustom",
3133
+ expected: "(boolean | undefined)",
3134
+ value: input3.isCustom
3127
3135
  }), "numeric" === input3.memberType || $report(_exceptionable2, {
3128
3136
  path: _path2 + ".memberType",
3129
3137
  expected: '"numeric"',
@@ -3347,6 +3355,10 @@ var validChatRequest = (input) => {
3347
3355
  path: _path2 + ".propsByTermId",
3348
3356
  expected: "__type.o7",
3349
3357
  value: input3.propsByTermId
3358
+ }), void 0 === input3.isCustom || "boolean" === typeof input3.isCustom || $report(_exceptionable2, {
3359
+ path: _path2 + ".isCustom",
3360
+ expected: "(boolean | undefined)",
3361
+ value: input3.isCustom
3350
3362
  }), "categorical" === input3.memberType || $report(_exceptionable2, {
3351
3363
  path: _path2 + ".memberType",
3352
3364
  expected: '"categorical"',
package/dist/termdb.chat2.js CHANGED
@@ -1,7 +1,7 @@
1
1
  import {
2
2
  validChatRequest,
3
3
  validChatResponse
4
- } from "./chunk-ZKO7LMCC.js";
4
+ } from "./chunk-TUM3OZ7K.js";
5
5
  import {
6
6
  ChatPayload
7
7
  } from "./chunk-FRXRNCDV.js";
package/dist/termdb.cluster.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  termdbClusterPayload,
3
3
  validTermdbClusterRequest,
4
4
  validTermdbClusterResponse
5
- } from "./chunk-UYKWZWCU.js";
5
+ } from "./chunk-JYTPHVO2.js";
6
6
  import "./chunk-YNHC5SXO.js";
7
7
  export {
8
8
  termdbClusterPayload,
package/dist/termdb.descrstats.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  descrStatsPayload,
3
3
  validDescrStatsRequest,
4
4
  validDescrStatsResponse
5
- } from "./chunk-45VA4Y6L.js";
5
+ } from "./chunk-YDJG6VT4.js";
6
6
  import "./chunk-YNHC5SXO.js";
7
7
  export {
8
8
  descrStatsPayload,
package/dist/termdb.dmr.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  TermdbDmrPayload,
3
3
  validTermdbDmrRequest,
4
4
  validTermdbDmrResponse
5
- } from "./chunk-K6W2WEPW.js";
5
+ } from "./chunk-NO3ZZD3L.js";
6
6
  import "./chunk-YNHC5SXO.js";
7
7
  export {
8
8
  TermdbDmrPayload,
package/dist/termdb.numericcategories.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  numericCategoriesPayload,
3
3
  validNumericCategoriesRequest,
4
4
  validNumericCategoriesResponse
5
- } from "./chunk-DDMUMMOL.js";
5
+ } from "./chunk-LDLZU2QY.js";
6
6
  import "./chunk-YNHC5SXO.js";
7
7
  export {
8
8
  numericCategoriesPayload,
package/dist/termdb.percentile.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  percentilePayload,
3
3
  validPercentileRequest,
4
4
  validPercentileResponse
5
- } from "./chunk-ZRTB7SRA.js";
5
+ } from "./chunk-ONNT3XV7.js";
6
6
  import "./chunk-YNHC5SXO.js";
7
7
  export {
8
8
  percentilePayload,
package/dist/termdb.proteome.js ADDED
@@ -0,0 +1,11 @@
1
+ import {
2
+ termdbProteomePayload,
3
+ validTermdbProteomeRequest,
4
+ validTermdbProteomeResponse
5
+ } from "./chunk-W3F3CLYP.js";
6
+ import "./chunk-YNHC5SXO.js";
7
+ export {
8
+ termdbProteomePayload,
9
+ validTermdbProteomeRequest,
10
+ validTermdbProteomeResponse
11
+ };
package/dist/termdb.termsbyids.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  termsByIdsPayload,
3
3
  validTermsByIdsRequest,
4
4
  validTermsByIdsResponse
5
- } from "./chunk-3DA4MJ2U.js";
5
+ } from "./chunk-URG6BNUU.js";
6
6
  import "./chunk-YNHC5SXO.js";
7
7
  export {
8
8
  termsByIdsPayload,
package/dist/termdb.topTermsByType.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  termdbTopTermsByTypePayload,
3
3
  validTermdbTopTermsByTypeRequest,
4
4
  validTermdbTopTermsByTypeResponse
5
- } from "./chunk-2QTCQFYE.js";
5
+ } from "./chunk-2NINVZOB.js";
6
6
  import "./chunk-YNHC5SXO.js";
7
7
  export {
8
8
  termdbTopTermsByTypePayload,
package/dist/termdb.topVariablyExpressedGenes.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  termdbTopVariablyExpressedGenesPayload,
3
3
  validTermdbTopVariablyExpressedGenesRequest,
4
4
  validTermdbTopVariablyExpressedGenesResponse
5
- } from "./chunk-VUNM6QTX.js";
5
+ } from "./chunk-QMEKJW2A.js";
6
6
  import "./chunk-YNHC5SXO.js";
7
7
  export {
8
8
  termdbTopVariablyExpressedGenesPayload,
package/dist/termdb.violinBox.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  validViolinBoxRequest,
3
3
  validViolinBoxResponse,
4
4
  violinBoxPayload
5
- } from "./chunk-C5ECCXOT.js";
5
+ } from "./chunk-NF6RKK5E.js";
6
6
  import "./chunk-YNHC5SXO.js";
7
7
  export {
8
8
  validViolinBoxRequest,
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@sjcrh/proteinpaint-types",
3
- "version": "2.182.0",
3
+ "version": "2.183.0",
4
4
  "type": "module",
5
5
  "description": "Shared type definitions between ProteinPaint server and client code",
6
6
  "main": "src/index.ts",
package/src/dataset.ts CHANGED
@@ -708,22 +708,33 @@ export type MetaboliteIntensityQueryNative = {
708
708
  export type MetaboliteIntensityQuery = MetaboliteIntensityQueryNative
709
709
 
710
710
  /** the proteomics query */
711
- type CohortConfig = {
712
- file: string
713
- filter?: Tvs[]
714
- overlayTerm?: BaseTerm
711
+ type ProteomeFilter = {
712
+ columnIdx: number
713
+ columnValue: string | number
715
714
  }
716
- type AssayWithCohorts = {
717
- cohorts: {
718
- [cohortName: string]: CohortConfig
719
- }
715
+
716
+ type ProteomeCohortConfig = {
717
+ cohortName: string
718
+ controlFilter: ProteomeFilter[]
719
+ caseFilter: ProteomeFilter[]
720
+ }
721
+
722
+ type ProteomeAssayConfig = {
723
+ columnIdx: number
724
+ columnValue: string | number
725
+ cohorts: ProteomeCohortConfig[]
726
+ /** optional PTM type for PTM assay type */
727
+ PTMType?: string
728
+ /** optional specific mclass override for PTM assay type */
729
+ mclassOverride?: Mclass
720
730
  }
721
- type AssayConfig = AssayWithCohorts
722
731
 
723
732
  export type ProteomeAbundanceQuery = {
733
+ /** database file path */
734
+ dbfile?: string
724
735
  /** document structure */
725
736
  assays: {
726
- [assayName: string]: AssayConfig
737
+ [assayName: string]: ProteomeAssayConfig
727
738
  }
728
739
  samples?: number[]
729
740
  /** _proteins,used to dynamically built cache of protein names to speed up search */
@@ -731,6 +742,8 @@ export type ProteomeAbundanceQuery = {
731
742
  get?: (param: any) => void
732
743
  find?: (param: string[]) => void
733
744
  bins?: { [index: string]: any }
745
+ /** set of control sample IDs returned from get() query */
746
+ controlSampleIds?: Set<string>
734
747
  }
735
748
 
736
749
  /** the geneExpression query
@@ -1053,10 +1066,7 @@ type Mds3Queries = {
1053
1066
  src: 'native'
1054
1067
  file: string
1055
1068
  }
1056
- proteome?: {
1057
- /** whole proteome abundance */
1058
- assays?: { [assayType: string]: AssayConfig }
1059
- }
1069
+ proteome?: ProteomeAbundanceQuery
1060
1070
  singleCell?: SingleCellQuery
1061
1071
  singleSampleGenomeQuantification?: SingleSampleGenomeQuantification
1062
1072
  singleSampleGbtk?: SingleSampleGbtk
@@ -1666,14 +1676,15 @@ keep this setting here for reason of:
1666
1676
  type TermCollectionBase = {
1667
1677
  /** human readable name as well as unique identifier for this collection */
1668
1678
  name: string
1669
- /** array of dictionary term ids belonging to this collection */
1670
- termIds: string[]
1679
+ /** array of dictionary term ids belonging to this collection.
1680
+ * Optional for custom (non-dictionary) collections where termlst[] is the primary source. */
1681
+ termIds?: string[]
1671
1682
  /** full term objects corresponding to termIds[]; populated by server on dataset init,
1672
1683
  * sent to client so fill() can resolve member term names without extra requests */
1673
1684
  termlst?: BaseTerm[]
1674
1685
  /** array of branch term ids belonging to this collection,
1675
1686
  * may be used as state.tree.expandedTermIds[] option to termdb appInit() */
1676
- branchIds: string[]
1687
+ branchIds?: string[]
1677
1688
  propsByTermId: {
1678
1689
  [termId: string]: any
1679
1690
  }