@sjcrh/proteinpaint-types 2.177.0 → 2.178.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (54) hide show
  1. package/dist/brainImaging.js +1 -1
  2. package/dist/{chunk-LHJGTOZJ.js → chunk-26UKKPK2.js} +1301 -594
  3. package/dist/{chunk-4SOVPEYQ.js → chunk-2XQJCZEO.js} +842 -243
  4. package/dist/{chunk-UQEAM7BH.js → chunk-2Y7WE3JU.js} +1301 -594
  5. package/dist/chunk-4DCPDZW4.js +143 -0
  6. package/dist/{chunk-5KF6Z3GL.js → chunk-CX2Y673E.js} +923 -329
  7. package/dist/chunk-CYQDO4FX.js +3191 -0
  8. package/dist/{chunk-W7UCAYSF.js → chunk-FQYNRDHB.js} +923 -329
  9. package/dist/chunk-FRXRNCDV.js +14 -0
  10. package/dist/{chunk-F4YCPOQV.js → chunk-GAYJUXNZ.js} +947 -353
  11. package/dist/{chunk-7WEVNKAM.js → chunk-HZEV7D5E.js} +1301 -594
  12. package/dist/{chunk-4ZMQ5CTL.js → chunk-NIEACU6R.js} +7 -31
  13. package/dist/{chunk-Q6MWNJ2V.js → chunk-NRV6MPRM.js} +3421 -1378
  14. package/dist/{chunk-44LN7YTE.js → chunk-PHRILOVX.js} +923 -329
  15. package/dist/{chunk-URHI6FFP.js → chunk-UFYKXOY2.js} +2233 -690
  16. package/dist/{chunk-63OD34W2.js → chunk-UWAVSKMD.js} +1301 -594
  17. package/dist/chunk-VBNF7BRI.js +3492 -0
  18. package/dist/{chunk-2DJFVQUQ.js → chunk-WXCXZRKP.js} +1305 -598
  19. package/dist/{chunk-7NKZVHIZ.js → chunk-YHKFJCXG.js} +1445 -496
  20. package/dist/correlationVolcano.js +1 -1
  21. package/dist/grin2.js +1 -1
  22. package/dist/index.js +79 -61
  23. package/dist/termdb.boxplot.js +1 -1
  24. package/dist/termdb.categories.js +1 -1
  25. package/dist/termdb.chat.js +3122 -5
  26. package/dist/termdb.chat2.js +13 -0
  27. package/dist/termdb.cluster.js +1 -1
  28. package/dist/termdb.descrstats.js +1 -1
  29. package/dist/termdb.diffMeth.js +11 -0
  30. package/dist/termdb.dmr.js +11 -0
  31. package/dist/termdb.numericcategories.js +1 -1
  32. package/dist/termdb.percentile.js +1 -1
  33. package/dist/termdb.singlecellData.js +1 -1
  34. package/dist/termdb.termsbyids.js +1 -1
  35. package/dist/termdb.topTermsByType.js +1 -1
  36. package/dist/termdb.topVariablyExpressedGenes.js +1 -1
  37. package/dist/termdb.violin.js +1 -1
  38. package/package.json +1 -1
  39. package/src/dataset.ts +55 -8
  40. package/src/index.ts +5 -1
  41. package/src/routes/grin2.ts +5 -11
  42. package/src/routes/{termdb.chat.ts → termdb.chat2.ts} +42 -15
  43. package/src/routes/termdb.cluster.ts +11 -0
  44. package/src/routes/termdb.diffMeth.ts +49 -0
  45. package/src/routes/termdb.dmr.ts +47 -0
  46. package/src/routes/termdb.singlecellData.ts +3 -1
  47. package/src/terms/dnaMethylation.ts +19 -0
  48. package/src/terms/numeric.ts +13 -2
  49. package/src/terms/singleCellCellType.ts +1 -1
  50. package/src/terms/singleCellGeneExpression.ts +25 -19
  51. package/src/terms/term.ts +1 -1
  52. package/src/terms/termCollection.ts +93 -21
  53. package/src/terms/wholeProteomeAbundance.ts +30 -0
  54. package/dist/chunk-WWE2SDCU.js +0 -494
@@ -2,7 +2,7 @@ import {
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  CorrelationVolcanoPayload,
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  validCorrelationVolcanoRequest,
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  validCorrelationVolcanoResponse
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- } from "./chunk-LHJGTOZJ.js";
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+ } from "./chunk-26UKKPK2.js";
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  import "./chunk-YNHC5SXO.js";
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  export {
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  CorrelationVolcanoPayload,
package/dist/grin2.js CHANGED
@@ -2,7 +2,7 @@ import {
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  GRIN2Payload,
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  validGRIN2Request,
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  validGRIN2Response
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- } from "./chunk-WWE2SDCU.js";
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+ } from "./chunk-VBNF7BRI.js";
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  import "./chunk-YNHC5SXO.js";
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  export {
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  GRIN2Payload,
package/dist/index.js CHANGED
@@ -1,8 +1,38 @@
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+ import {
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+ tilePayload,
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+ validTileRequest,
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+ validTileResponse
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+ } from "./chunk-HQV2A7JV.js";
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+ import {
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+ validWSImagesRequest,
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+ validWSImagesResponse,
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+ wsImagesPayload
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+ } from "./chunk-VUKRI3TG.js";
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+ import {
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+ validWSISamplesRequest,
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+ validWSISamplesResponse,
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+ wsiSamplesPayload
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+ } from "./chunk-2744ACBX.js";
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+ import {
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+ termdbSingleCellDataPayload,
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+ validTermdbSingleCellDataRequest,
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+ validTermdbSingleCellDataResponse
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+ } from "./chunk-NIEACU6R.js";
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+ import {
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+ termdbSingleCellSamplesPayload,
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+ validTermdbSingleCellSamplesRequest,
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+ validTermdbSingleCellSamplesResponse
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+ } from "./chunk-XIRCL7KT.js";
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+ import {
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+ termChildrenPayload,
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+ validTermChildrenRequest,
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+ validTermChildrenResponse
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+ } from "./chunk-P25WDNMD.js";
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  import {
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  termsByIdsPayload,
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  validTermsByIdsRequest,
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  validTermsByIdsResponse
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- } from "./chunk-7WEVNKAM.js";
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+ } from "./chunk-HZEV7D5E.js";
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  import {
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  topMutatedGenePayload,
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  validtopMutatedGeneRequest,
@@ -12,32 +42,32 @@ import {
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  termdbTopTermsByTypePayload,
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  validTermdbTopTermsByTypeRequest,
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  validTermdbTopTermsByTypeResponse
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- } from "./chunk-URHI6FFP.js";
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+ } from "./chunk-UFYKXOY2.js";
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  import {
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  termdbTopVariablyExpressedGenesPayload,
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  validTermdbTopVariablyExpressedGenesRequest,
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  validTermdbTopVariablyExpressedGenesResponse
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- } from "./chunk-W7UCAYSF.js";
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+ } from "./chunk-FQYNRDHB.js";
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  import {
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  validViolinRequest,
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  validViolinResponse,
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  violinPayload
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- } from "./chunk-44LN7YTE.js";
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+ } from "./chunk-PHRILOVX.js";
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  import {
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- tilePayload,
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- validTileRequest,
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- validTileResponse
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- } from "./chunk-HQV2A7JV.js";
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+ ProfileFormScoresPayload,
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+ validProfileFormScoresRequest,
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+ validProfileFormScoresResponse
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+ } from "./chunk-ZIOJDN75.js";
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  import {
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- validWSImagesRequest,
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- validWSImagesResponse,
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- wsImagesPayload
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- } from "./chunk-VUKRI3TG.js";
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+ ProfileScoresPayload,
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+ validProfileScoresRequest,
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+ validProfileScoresResponse
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+ } from "./chunk-MHDQO7R5.js";
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  import {
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- validWSISamplesRequest,
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- validWSISamplesResponse,
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- wsiSamplesPayload
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- } from "./chunk-2744ACBX.js";
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+ rootTermPayload,
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+ validRootTermRequest,
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+ validRootTermResponse
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+ } from "./chunk-Q3HGHP3J.js";
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  import {
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  runChartPayload,
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  validRunChartRequest,
@@ -64,20 +94,10 @@ import {
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  validTermdbSingleCellDEgenesResponse
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  } from "./chunk-3EVYVWI2.js";
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  import {
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- termdbSingleCellDataPayload,
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- validTermdbSingleCellDataRequest,
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- validTermdbSingleCellDataResponse
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- } from "./chunk-4ZMQ5CTL.js";
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- import {
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- termdbSingleCellSamplesPayload,
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- validTermdbSingleCellSamplesRequest,
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- validTermdbSingleCellSamplesResponse
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- } from "./chunk-XIRCL7KT.js";
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- import {
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- termChildrenPayload,
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- validTermChildrenRequest,
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- validTermChildrenResponse
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- } from "./chunk-P25WDNMD.js";
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+ termdbCohortSummaryPayload,
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+ validTermdbCohortSummaryRequest,
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+ validTermdbCohortSummaryResponse
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+ } from "./chunk-LRVF7U64.js";
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  import {
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  termdbCohortsPayload,
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  validTermdbCohortsRequest,
@@ -87,7 +107,17 @@ import {
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  descrStatsPayload,
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  validDescrStatsRequest,
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  validDescrStatsResponse
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- } from "./chunk-63OD34W2.js";
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+ } from "./chunk-UWAVSKMD.js";
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+ import {
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+ diffMethPayload,
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+ validDiffMethRequest,
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+ validDiffMethResponse
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+ } from "./chunk-4DCPDZW4.js";
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+ import {
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+ TermdbDmrPayload,
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+ validTermdbDmrRequest,
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+ validTermdbDmrResponse
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+ } from "./chunk-CYQDO4FX.js";
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  import {
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  FilterTermValuesPayload,
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  validFilterTermValuesRequest,
@@ -97,27 +127,12 @@ import {
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  numericCategoriesPayload,
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  validNumericCategoriesRequest,
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  validNumericCategoriesResponse
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- } from "./chunk-5KF6Z3GL.js";
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+ } from "./chunk-CX2Y673E.js";
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  import {
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  percentilePayload,
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  validPercentileRequest,
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  validPercentileResponse
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- } from "./chunk-7NKZVHIZ.js";
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- import {
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- ProfileFormScoresPayload,
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- validProfileFormScoresRequest,
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- validProfileFormScoresResponse
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- } from "./chunk-ZIOJDN75.js";
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- import {
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- ProfileScoresPayload,
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- validProfileScoresRequest,
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- validProfileScoresResponse
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- } from "./chunk-MHDQO7R5.js";
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- import {
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- rootTermPayload,
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- validRootTermRequest,
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- validRootTermResponse
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- } from "./chunk-Q3HGHP3J.js";
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+ } from "./chunk-YHKFJCXG.js";
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  import {
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  saveWSIAnnotationPayload,
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  validSaveWSIAnnotationRequest,
@@ -137,27 +152,24 @@ import {
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  boxplotPayload,
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  validBoxPlotRequest,
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  validBoxPlotResponse
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- } from "./chunk-2DJFVQUQ.js";
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+ } from "./chunk-WXCXZRKP.js";
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  import {
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  termdbCategoriesPayload,
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  validCategoriesRequest,
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  validCategoriesResponse
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- } from "./chunk-UQEAM7BH.js";
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+ } from "./chunk-2Y7WE3JU.js";
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  import {
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- ChatPayload,
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  validChatRequest,
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  validChatResponse
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- } from "./chunk-F4YCPOQV.js";
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+ } from "./chunk-GAYJUXNZ.js";
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+ import {
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+ ChatPayload
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+ } from "./chunk-FRXRNCDV.js";
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  import {
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  termdbClusterPayload,
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  validTermdbClusterRequest,
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  validTermdbClusterResponse
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- } from "./chunk-Q6MWNJ2V.js";
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- import {
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- termdbCohortSummaryPayload,
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- validTermdbCohortSummaryRequest,
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- validTermdbCohortSummaryResponse
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- } from "./chunk-LRVF7U64.js";
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+ } from "./chunk-NRV6MPRM.js";
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  import {
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  hicGenomePayload,
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  validHicGenomeRequest,
@@ -222,7 +234,7 @@ import {
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  GRIN2Payload,
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  validGRIN2Request,
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  validGRIN2Response
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- } from "./chunk-WWE2SDCU.js";
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+ } from "./chunk-VBNF7BRI.js";
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  import {
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  healthcheckPayload,
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  validHealthCheckRequest,
@@ -244,7 +256,7 @@ import {
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  CorrelationVolcanoPayload,
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  validCorrelationVolcanoRequest,
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  validCorrelationVolcanoResponse
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- } from "./chunk-LHJGTOZJ.js";
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+ } from "./chunk-26UKKPK2.js";
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  import {
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  datasetPayload,
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  validDatasetRequest,
@@ -302,7 +314,7 @@ import {
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  brainImagingPayload,
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  validBrainImagingRequest,
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  validBrainImagingResponse
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- } from "./chunk-4SOVPEYQ.js";
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+ } from "./chunk-2XQJCZEO.js";
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  import {
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  brainImagingSamplesPayload,
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  validBrainImagingSamplesRequest,
@@ -322,6 +334,7 @@ export {
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  GdcMafPayload,
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  ProfileFormScoresPayload,
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  ProfileScoresPayload,
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+ TermdbDmrPayload,
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  aiProjectAdminPayload,
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  aiProjectSelectedWSImagesResponsePayload,
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  aiProjectTrainModelPayload,
@@ -336,6 +349,7 @@ export {
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  deleteWSITileSelectionPayload,
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  descrStatsPayload,
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  diffExpPayload,
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+ diffMethPayload,
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  dsDataPayload,
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  dzImagesPayload,
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  gdcGRIN2listPayload,
@@ -407,6 +421,8 @@ export {
407
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  validDeleteWSITileSelectionResponse,
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  validDescrStatsRequest,
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  validDescrStatsResponse,
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+ validDiffMethRequest,
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+ validDiffMethResponse,
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  validDsDataRequest,
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  validDsDataResponse,
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  validFilterTermValuesRequest,
@@ -467,6 +483,8 @@ export {
467
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  validTermdbCohortSummaryResponse,
468
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  validTermdbCohortsRequest,
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  validTermdbCohortsResponse,
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+ validTermdbDmrRequest,
487
+ validTermdbDmrResponse,
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  validTermdbSampleImagesRequest,
471
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  validTermdbSampleImagesResponse,
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  validTermdbSampleScatterRequest,
@@ -2,7 +2,7 @@ import {
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  boxplotPayload,
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  validBoxPlotRequest,
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  validBoxPlotResponse
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- } from "./chunk-2DJFVQUQ.js";
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+ } from "./chunk-WXCXZRKP.js";
6
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  import "./chunk-YNHC5SXO.js";
7
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  export {
8
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  boxplotPayload,
@@ -2,7 +2,7 @@ import {
2
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  termdbCategoriesPayload,
3
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  validCategoriesRequest,
4
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  validCategoriesResponse
5
- } from "./chunk-UQEAM7BH.js";
5
+ } from "./chunk-2Y7WE3JU.js";
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  import "./chunk-YNHC5SXO.js";
7
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  export {
8
8
  termdbCategoriesPayload,