@sjcrh/proteinpaint-types 2.176.0 → 2.177.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/brainImaging.js +1 -1
- package/dist/{chunk-CJVAIEUK.js → chunk-2DJFVQUQ.js} +273 -203
- package/dist/{chunk-HJEEUTW3.js → chunk-44LN7YTE.js} +82 -12
- package/dist/{chunk-QYQNPL6O.js → chunk-4SOVPEYQ.js} +125 -55
- package/dist/{chunk-U5H2DV3T.js → chunk-5KF6Z3GL.js} +82 -12
- package/dist/{chunk-GZRRMIZZ.js → chunk-63OD34W2.js} +273 -203
- package/dist/{chunk-CMC3WJO7.js → chunk-7NKZVHIZ.js} +251 -177
- package/dist/{chunk-YIF5KN5P.js → chunk-7WEVNKAM.js} +273 -203
- package/dist/{chunk-ZGX6LDVV.js → chunk-F4YCPOQV.js} +82 -12
- package/dist/{chunk-7LV73FRY.js → chunk-LHJGTOZJ.js} +292 -222
- package/dist/{chunk-Z763D57O.js → chunk-Q6MWNJ2V.js} +469 -325
- package/dist/{chunk-CJKG67B2.js → chunk-TWNJZBZK.js} +61 -17
- package/dist/{chunk-VZNEPZ73.js → chunk-UQEAM7BH.js} +273 -203
- package/dist/{chunk-6VN4YVWP.js → chunk-URHI6FFP.js} +333 -189
- package/dist/{chunk-JVEPTUQN.js → chunk-W7UCAYSF.js} +82 -12
- package/dist/correlationVolcano.js +1 -1
- package/dist/index.js +14 -14
- package/dist/termdb.boxplot.js +1 -1
- package/dist/termdb.categories.js +1 -1
- package/dist/termdb.chat.js +1 -1
- package/dist/termdb.cluster.js +1 -1
- package/dist/termdb.descrstats.js +1 -1
- package/dist/termdb.numericcategories.js +1 -1
- package/dist/termdb.percentile.js +1 -1
- package/dist/termdb.runChart.js +1 -1
- package/dist/termdb.termsbyids.js +1 -1
- package/dist/termdb.topTermsByType.js +1 -1
- package/dist/termdb.topVariablyExpressedGenes.js +1 -1
- package/dist/termdb.violin.js +1 -1
- package/package.json +1 -1
- package/src/dataset.ts +6 -0
- package/src/routes/termdb.runChart.ts +29 -12
- package/src/terms/termCollection.ts +2 -2
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@@ -80,16 +80,17 @@ var validTermdbTopVariablyExpressedGenesRequest = (input) => {
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const $io39 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "geneVariant" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io7(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io9(input3.valueConversion)) && "coord" === input3.kind && "string" === typeof input3.chr && "number" === typeof input3.start && "number" === typeof input3.stop && (Array.isArray(input3.genes) && input3.genes.every((elem) => "object" === typeof elem && null !== elem && $iu3(elem))) && (void 0 === input3.groupsetting || "object" === typeof input3.groupsetting && null !== input3.groupsetting && $io10(input3.groupsetting)) && (void 0 === input3.childTerms || Array.isArray(input3.childTerms) && input3.childTerms.every((elem) => "object" === typeof elem && null !== elem && $io35(elem)));
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const $io40 = (input3) => "string" === typeof input3.key && "string" === typeof input3.label && "string" === typeof input3.value;
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const $io41 = (input3) => (void 0 === input3.join || "string" === typeof input3.join) && (void 0 === input3.isnot || "boolean" === typeof input3.isnot) && ("object" === typeof input3.term && null !== input3.term && $io42(input3.term)) && "number" === typeof input3.ratio;
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const $io42 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "termCollection" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io7(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io9(input3.valueConversion)) && (void 0 === input3.collectionId || "string" === typeof input3.collectionId) && (Array.isArray(input3.termlst) && input3.termlst.every((elem) => "
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const $io43 = (input3) =>
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const $io42 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "termCollection" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io7(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io9(input3.valueConversion)) && (void 0 === input3.collectionId || "string" === typeof input3.collectionId) && (Array.isArray(input3.termlst) && input3.termlst.every((elem) => "object" === typeof elem && null !== elem && $io43(elem))) && (void 0 === input3.numerators || Array.isArray(input3.numerators) && input3.numerators.every((elem) => "string" === typeof elem)) && (void 0 === input3.newTvs || "boolean" === typeof input3.newTvs) && ("object" === typeof input3.propsByTermId && null !== input3.propsByTermId && false === Array.isArray(input3.propsByTermId) && $io44(input3.propsByTermId));
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const $io43 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "string" === typeof input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io7(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io9(input3.valueConversion));
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const $io44 = (input3) => Object.keys(input3).every((key) => {
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const value = input3[key];
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if (void 0 === value)
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return true;
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if (RegExp(/(.*)/).test(key))
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return "object" === typeof value && null !== value && false === Array.isArray(value) && $
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return "object" === typeof value && null !== value && false === Array.isArray(value) && $io45(value);
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return true;
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});
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const $
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const $io45 = (input3) => Object.keys(input3).every((key) => {
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const value = input3[key];
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if (void 0 === value)
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return true;
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@@ -2261,15 +2262,19 @@ var validTermdbTopVariablyExpressedGenesRequest = (input) => {
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value: input3.collectionId
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}), (Array.isArray(input3.termlst) || $report(_exceptionable2, {
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path: _path2 + ".termlst",
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expected: "Array<
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expected: "Array<BaseTerm>",
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value: input3.termlst
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})) && input3.termlst.map((elem, _index43) => "
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})) && input3.termlst.map((elem, _index43) => ("object" === typeof elem && null !== elem || $report(_exceptionable2, {
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path: _path2 + ".termlst[" + _index43 + "]",
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expected: "
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expected: "BaseTerm",
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value: elem
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})) && $vo43(elem, _path2 + ".termlst[" + _index43 + "]", _exceptionable2) || $report(_exceptionable2, {
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path: _path2 + ".termlst[" + _index43 + "]",
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expected: "BaseTerm",
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value: elem
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})).every((flag) => flag) || $report(_exceptionable2, {
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path: _path2 + ".termlst",
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expected: "Array<
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expected: "Array<BaseTerm>",
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value: input3.termlst
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}), void 0 === input3.numerators || (Array.isArray(input3.numerators) || $report(_exceptionable2, {
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path: _path2 + ".numerators",
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@@ -2291,12 +2296,77 @@ var validTermdbTopVariablyExpressedGenesRequest = (input) => {
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path: _path2 + ".propsByTermId",
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expected: "__type.o8",
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value: input3.propsByTermId
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})) && $
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})) && $vo44(input3.propsByTermId, _path2 + ".propsByTermId", _exceptionable2) || $report(_exceptionable2, {
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path: _path2 + ".propsByTermId",
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expected: "__type.o8",
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value: input3.propsByTermId
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})].every((flag) => flag);
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const $vo43 = (input3, _path2, _exceptionable2 = true) => [
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const $vo43 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.id || $report(_exceptionable2, {
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path: _path2 + ".id",
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expected: "string",
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value: input3.id
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}), "string" === typeof input3.name || $report(_exceptionable2, {
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path: _path2 + ".name",
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expected: "string",
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value: input3.name
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}), "string" === typeof input3.type || $report(_exceptionable2, {
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path: _path2 + ".type",
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expected: "string",
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value: input3.type
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}), void 0 === input3.child_types || (Array.isArray(input3.child_types) || $report(_exceptionable2, {
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path: _path2 + ".child_types",
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expected: "(Array<string> | undefined)",
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value: input3.child_types
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})) && input3.child_types.map((elem, _index45) => "string" === typeof elem || $report(_exceptionable2, {
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path: _path2 + ".child_types[" + _index45 + "]",
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expected: "string",
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value: elem
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})).every((flag) => flag) || $report(_exceptionable2, {
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path: _path2 + ".child_types",
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expected: "(Array<string> | undefined)",
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value: input3.child_types
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}), void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail || $report(_exceptionable2, {
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path: _path2 + ".hashtmldetail",
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expected: "(boolean | undefined)",
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value: input3.hashtmldetail
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}), void 0 === input3.included_types || (Array.isArray(input3.included_types) || $report(_exceptionable2, {
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path: _path2 + ".included_types",
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expected: "(Array<string> | undefined)",
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value: input3.included_types
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})) && input3.included_types.map((elem, _index46) => "string" === typeof elem || $report(_exceptionable2, {
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path: _path2 + ".included_types[" + _index46 + "]",
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expected: "string",
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value: elem
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})).every((flag) => flag) || $report(_exceptionable2, {
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path: _path2 + ".included_types",
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expected: "(Array<string> | undefined)",
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value: input3.included_types
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}), void 0 === input3.isleaf || "boolean" === typeof input3.isleaf || $report(_exceptionable2, {
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path: _path2 + ".isleaf",
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expected: "(boolean | undefined)",
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value: input3.isleaf
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}), void 0 === input3.values || ("object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) || $report(_exceptionable2, {
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path: _path2 + ".values",
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expected: "(TermValues | undefined)",
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value: input3.values
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})) && $vo7(input3.values, _path2 + ".values", _exceptionable2) || $report(_exceptionable2, {
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path: _path2 + ".values",
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expected: "(TermValues | undefined)",
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value: input3.values
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}), void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild || $report(_exceptionable2, {
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path: _path2 + ".skipValuesBuild",
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expected: "(boolean | undefined)",
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value: input3.skipValuesBuild
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}), void 0 === input3.valueConversion || ("object" === typeof input3.valueConversion && null !== input3.valueConversion || $report(_exceptionable2, {
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path: _path2 + ".valueConversion",
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expected: "(__type.o3 | undefined)",
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value: input3.valueConversion
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})) && $vo9(input3.valueConversion, _path2 + ".valueConversion", _exceptionable2) || $report(_exceptionable2, {
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path: _path2 + ".valueConversion",
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expected: "(__type.o3 | undefined)",
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value: input3.valueConversion
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})].every((flag) => flag);
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const $vo44 = (input3, _path2, _exceptionable2 = true) => [false === _exceptionable2 || Object.keys(input3).map((key) => {
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const value = input3[key];
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if (void 0 === value)
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return true;
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@@ -2305,14 +2375,14 @@ var validTermdbTopVariablyExpressedGenesRequest = (input) => {
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path: _path2 + $join(key),
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expected: "__type.o9",
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value
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})) && $
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})) && $vo45(value, _path2 + $join(key), _exceptionable2) || $report(_exceptionable2, {
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value
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});
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return true;
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}).every((flag) => flag)].every((flag) => flag);
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const $
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const $vo45 = (input3, _path2, _exceptionable2 = true) => [false === _exceptionable2 || Object.keys(input3).map((key) => {
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const value = input3[key];
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package/dist/index.js
CHANGED
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@@ -2,7 +2,7 @@ import {
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termsByIdsPayload,
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validTermsByIdsRequest,
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validTermsByIdsResponse
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} from "./chunk-
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} from "./chunk-7WEVNKAM.js";
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import {
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topMutatedGenePayload,
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validtopMutatedGeneRequest,
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@@ -12,17 +12,17 @@ import {
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termdbTopTermsByTypePayload,
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validTermdbTopTermsByTypeRequest,
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validTermdbTopTermsByTypeResponse
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} from "./chunk-
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} from "./chunk-URHI6FFP.js";
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import {
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termdbTopVariablyExpressedGenesPayload,
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validTermdbTopVariablyExpressedGenesRequest,
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validTermdbTopVariablyExpressedGenesResponse
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} from "./chunk-
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} from "./chunk-W7UCAYSF.js";
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import {
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validViolinRequest,
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validViolinResponse,
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violinPayload
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} from "./chunk-
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} from "./chunk-44LN7YTE.js";
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import {
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tilePayload,
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validTileRequest,
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@@ -42,7 +42,7 @@ import {
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runChartPayload,
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validRunChartRequest,
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validRunChartResponse
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} from "./chunk-
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} from "./chunk-TWNJZBZK.js";
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import {
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termdbSampleImagesPayload,
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validTermdbSampleImagesRequest,
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@@ -87,7 +87,7 @@ import {
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descrStatsPayload,
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validDescrStatsRequest,
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validDescrStatsResponse
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} from "./chunk-
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} from "./chunk-63OD34W2.js";
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import {
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FilterTermValuesPayload,
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validFilterTermValuesRequest,
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@@ -97,12 +97,12 @@ import {
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numericCategoriesPayload,
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validNumericCategoriesRequest,
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validNumericCategoriesResponse
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} from "./chunk-
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} from "./chunk-5KF6Z3GL.js";
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import {
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percentilePayload,
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validPercentileRequest,
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validPercentileResponse
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} from "./chunk-
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+
} from "./chunk-7NKZVHIZ.js";
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import {
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107
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ProfileFormScoresPayload,
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108
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validProfileFormScoresRequest,
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@@ -137,22 +137,22 @@ import {
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boxplotPayload,
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138
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validBoxPlotRequest,
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139
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validBoxPlotResponse
|
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-
} from "./chunk-
|
|
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+
} from "./chunk-2DJFVQUQ.js";
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141
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import {
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142
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termdbCategoriesPayload,
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validCategoriesRequest,
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144
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validCategoriesResponse
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-
} from "./chunk-
|
|
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+
} from "./chunk-UQEAM7BH.js";
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146
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import {
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ChatPayload,
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validChatRequest,
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validChatResponse
|
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-
} from "./chunk-
|
|
150
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+
} from "./chunk-F4YCPOQV.js";
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151
|
import {
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152
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termdbClusterPayload,
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153
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validTermdbClusterRequest,
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validTermdbClusterResponse
|
|
155
|
-
} from "./chunk-
|
|
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|
+
} from "./chunk-Q6MWNJ2V.js";
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156
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import {
|
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157
157
|
termdbCohortSummaryPayload,
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158
158
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validTermdbCohortSummaryRequest,
|
|
@@ -244,7 +244,7 @@ import {
|
|
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244
244
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CorrelationVolcanoPayload,
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245
245
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validCorrelationVolcanoRequest,
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246
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validCorrelationVolcanoResponse
|
|
247
|
-
} from "./chunk-
|
|
247
|
+
} from "./chunk-LHJGTOZJ.js";
|
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248
248
|
import {
|
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249
249
|
datasetPayload,
|
|
250
250
|
validDatasetRequest,
|
|
@@ -302,7 +302,7 @@ import {
|
|
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302
302
|
brainImagingPayload,
|
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303
303
|
validBrainImagingRequest,
|
|
304
304
|
validBrainImagingResponse
|
|
305
|
-
} from "./chunk-
|
|
305
|
+
} from "./chunk-4SOVPEYQ.js";
|
|
306
306
|
import {
|
|
307
307
|
brainImagingSamplesPayload,
|
|
308
308
|
validBrainImagingSamplesRequest,
|
package/dist/termdb.boxplot.js
CHANGED
package/dist/termdb.chat.js
CHANGED
package/dist/termdb.cluster.js
CHANGED
package/dist/termdb.runChart.js
CHANGED
|
@@ -2,7 +2,7 @@ import {
|
|
|
2
2
|
termdbTopVariablyExpressedGenesPayload,
|
|
3
3
|
validTermdbTopVariablyExpressedGenesRequest,
|
|
4
4
|
validTermdbTopVariablyExpressedGenesResponse
|
|
5
|
-
} from "./chunk-
|
|
5
|
+
} from "./chunk-W7UCAYSF.js";
|
|
6
6
|
import "./chunk-YNHC5SXO.js";
|
|
7
7
|
export {
|
|
8
8
|
termdbTopVariablyExpressedGenesPayload,
|
package/dist/termdb.violin.js
CHANGED
package/package.json
CHANGED
package/src/dataset.ts
CHANGED
|
@@ -1597,6 +1597,12 @@ keep this setting here for reason of:
|
|
|
1597
1597
|
}
|
|
1598
1598
|
/** maximum number of genes to query in geneVariant gene set */
|
|
1599
1599
|
maxGeneVariantGeneSetSize?: number
|
|
1600
|
+
/** (server-side) maximum number of awaited by-term queries for sample data */
|
|
1601
|
+
maxConcurrentQueries?: number
|
|
1602
|
+
/** (client-side) maximum number of terms that should be submitted in one fetch request in TermdbVocab.getAnnotatedSampleData() */
|
|
1603
|
+
maxAnnoTermsPerClientRequest?: number
|
|
1604
|
+
/** option to disable mayAddDataAvailability() based on request path and query parameters */
|
|
1605
|
+
disableAssayAvailability?: (path: string, query: { [key: string]: any }) => boolean
|
|
1600
1606
|
//terms are shown in the dictionary based on term and user role.
|
|
1601
1607
|
isTermVisible?: (clientAuthResult: any, ids: string) => boolean
|
|
1602
1608
|
hiddenIds?: string[]
|
|
@@ -9,23 +9,40 @@ export type RunChartRequest = {
|
|
|
9
9
|
* runChart2Period: q.mode='discrete' (with bins) → multiple series by period.
|
|
10
10
|
*/
|
|
11
11
|
xtw: { term: { id: string }; q?: { mode?: 'continuous' | 'discrete' }; $id?: string }
|
|
12
|
-
/** term wrapper for y axis: { term, q } */
|
|
13
|
-
ytw
|
|
14
|
-
aggregation
|
|
12
|
+
/** term wrapper for y axis: { term, q }. When omitted, chart renders as frequency (count per time bucket). */
|
|
13
|
+
ytw?: { term: { id: string }; q?: { mode?: string }; $id?: string }
|
|
14
|
+
aggregation?: 'median'
|
|
15
|
+
/** When true (frequency mode only), series Y values are cumulative counts. */
|
|
16
|
+
showCumulativeFrequency?: boolean
|
|
15
17
|
filter?: any
|
|
16
18
|
__protected__?: any // auth token for accessing protected data
|
|
17
19
|
}
|
|
18
20
|
|
|
19
|
-
export type
|
|
20
|
-
|
|
21
|
+
export type RunChartSeries = {
|
|
22
|
+
/** period/series identifier */
|
|
23
|
+
seriesId?: string
|
|
24
|
+
/** calculated Y median value for this curve */
|
|
25
|
+
median: number
|
|
26
|
+
points: Point[]
|
|
27
|
+
}
|
|
28
|
+
|
|
29
|
+
export type RunChartSuccessResponse = {
|
|
30
|
+
status: 'ok'
|
|
21
31
|
/** each series is one curve, with a median. a runchart may show 1 or multiple curves */
|
|
22
|
-
series:
|
|
23
|
-
|
|
24
|
-
|
|
25
|
-
|
|
26
|
-
|
|
27
|
-
|
|
28
|
-
|
|
32
|
+
series: RunChartSeries[]
|
|
33
|
+
}
|
|
34
|
+
|
|
35
|
+
export type RunChartErrorResponse = {
|
|
36
|
+
error: string
|
|
37
|
+
/** Always empty on error; present so response shape is consistent for clients/checkers. */
|
|
38
|
+
series: RunChartSeries[]
|
|
39
|
+
}
|
|
40
|
+
|
|
41
|
+
/** Discriminated union: server returns success shape on 200 or error shape with series: []. */
|
|
42
|
+
export type RunChartResponse = RunChartSuccessResponse | RunChartErrorResponse
|
|
43
|
+
|
|
44
|
+
export function isRunChartSuccess(r: RunChartResponse): r is RunChartSuccessResponse {
|
|
45
|
+
return 'status' in r && r.status === 'ok'
|
|
29
46
|
}
|
|
30
47
|
|
|
31
48
|
type Point = {
|
|
@@ -10,7 +10,7 @@ export type TermCollection = BaseTerm & {
|
|
|
10
10
|
type: 'termCollection'
|
|
11
11
|
// may be queried from backend, but should be available in frontend for termsetting edit menu
|
|
12
12
|
/** the full list of term.ids that are available in this collection */
|
|
13
|
-
termlst:
|
|
13
|
+
termlst: BaseTerm[]
|
|
14
14
|
numerators?: string[]
|
|
15
15
|
newTvs?: boolean
|
|
16
16
|
propsByTermId: {
|
|
@@ -22,7 +22,7 @@ export type TermCollection = BaseTerm & {
|
|
|
22
22
|
|
|
23
23
|
export type RawTermCollection = TermCollection & {
|
|
24
24
|
type?: 'termCollection'
|
|
25
|
-
termlst:
|
|
25
|
+
termlst: BaseTerm[]
|
|
26
26
|
propsByTermId?: {
|
|
27
27
|
[termId: string]: {
|
|
28
28
|
[prop: string]: any
|