@sjcrh/proteinpaint-types 2.174.0 → 2.175.0

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Files changed (18) hide show
  1. package/dist/{chunk-YL3WWIZ5.js → chunk-7LV73FRY.js} +10 -2
  2. package/dist/{chunk-JKELINOM.js → chunk-CJKG67B2.js} +81 -21
  3. package/dist/{chunk-HGEP2X66.js → chunk-KXAR65TO.js} +10 -2
  4. package/dist/{chunk-AR3AKHJS.js → chunk-LKRDK6V6.js} +10 -2
  5. package/dist/{chunk-WBFZCBLP.js → chunk-OIQOK4UP.js} +10 -2
  6. package/dist/{chunk-INOXLGIG.js → chunk-YIF5KN5P.js} +10 -2
  7. package/dist/correlationVolcano.js +1 -1
  8. package/dist/index.js +6 -6
  9. package/dist/termdb.boxplot.js +1 -1
  10. package/dist/termdb.categories.js +1 -1
  11. package/dist/termdb.descrstats.js +1 -1
  12. package/dist/termdb.runChart.js +1 -1
  13. package/dist/termdb.termsbyids.js +1 -1
  14. package/package.json +1 -1
  15. package/src/dataset.ts +2 -0
  16. package/src/routes/termdb.chat.ts +14 -2
  17. package/src/routes/termdb.runChart.ts +11 -9
  18. package/src/terms/geneVariant.ts +20 -4
package/dist/{chunk-YL3WWIZ5.js → chunk-7LV73FRY.js} RENAMED
@@ -126,9 +126,9 @@ var validCorrelationVolcanoRequest = (input) => {
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  const $io64 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "geneVariant" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io5(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io7(input3.valueConversion)) && "coord" === input3.kind && "string" === typeof input3.chr && "number" === typeof input3.start && "number" === typeof input3.stop && (Array.isArray(input3.genes) && input3.genes.every((elem) => "object" === typeof elem && null !== elem && $iu3(elem))) && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $io8(input3.groupsetting)) && (Array.isArray(input3.childTerms) && input3.childTerms.every((elem) => "object" === typeof elem && null !== elem && $io33(elem)));
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  const $io65 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io18(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && (void 0 === input3.cnvGainCutoff || "number" === typeof input3.cnvGainCutoff) && (void 0 === input3.cnvMaxLength || "number" === typeof input3.cnvMaxLength) && (void 0 === input3.cnvMinAbsValue || "number" === typeof input3.cnvMinAbsValue) && (void 0 === input3.cnvLossCutoff || "number" === typeof input3.cnvLossCutoff) && "values" === input3.type;
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  const $io66 = (input3) => (void 0 === input3.id || "string" === typeof input3.id) && (void 0 === input3.$id || "string" === typeof input3.$id) && (void 0 === input3.isAtomic || true === input3.isAtomic) && true && (void 0 === input3.settings || "object" === typeof input3.settings && null !== input3.settings && false === Array.isArray(input3.settings) && $io44(input3.settings)) && true && (void 0 === input3.minNumSamples || "number" === typeof input3.minNumSamples) && true && "GvPredefinedGsTW" === input3.type && ("object" === typeof input3.term && null !== input3.term && $iu12(input3.term)) && ("object" === typeof input3.q && null !== input3.q && $io67(input3.q));
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- const $io67 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io18(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && (void 0 === input3.cnvGainCutoff || "number" === typeof input3.cnvGainCutoff) && (void 0 === input3.cnvMaxLength || "number" === typeof input3.cnvMaxLength) && (void 0 === input3.cnvMinAbsValue || "number" === typeof input3.cnvMinAbsValue) && (void 0 === input3.cnvLossCutoff || "number" === typeof input3.cnvLossCutoff) && "predefined-groupset" === input3.type && "number" === typeof input3.predefined_groupset_idx;
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+ const $io67 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io18(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && (void 0 === input3.cnvGainCutoff || "number" === typeof input3.cnvGainCutoff) && (void 0 === input3.cnvMaxLength || "number" === typeof input3.cnvMaxLength) && (void 0 === input3.cnvMinAbsValue || "number" === typeof input3.cnvMinAbsValue) && (void 0 === input3.cnvLossCutoff || "number" === typeof input3.cnvLossCutoff) && "predefined-groupset" === input3.type && "number" === typeof input3.predefined_groupset_idx && Array.isArray(input3.dtLst);
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  const $io68 = (input3) => (void 0 === input3.id || "string" === typeof input3.id) && (void 0 === input3.$id || "string" === typeof input3.$id) && (void 0 === input3.isAtomic || true === input3.isAtomic) && true && (void 0 === input3.settings || "object" === typeof input3.settings && null !== input3.settings && false === Array.isArray(input3.settings) && $io44(input3.settings)) && true && (void 0 === input3.minNumSamples || "number" === typeof input3.minNumSamples) && true && "GvCustomGsTW" === input3.type && ("object" === typeof input3.term && null !== input3.term && $iu12(input3.term)) && ("object" === typeof input3.q && null !== input3.q && $io69(input3.q));
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- const $io69 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io18(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && (void 0 === input3.cnvGainCutoff || "number" === typeof input3.cnvGainCutoff) && (void 0 === input3.cnvMaxLength || "number" === typeof input3.cnvMaxLength) && (void 0 === input3.cnvMinAbsValue || "number" === typeof input3.cnvMinAbsValue) && (void 0 === input3.cnvLossCutoff || "number" === typeof input3.cnvLossCutoff) && "custom-groupset" === input3.type && ("object" === typeof input3.customset && null !== input3.customset && $io52(input3.customset));
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+ const $io69 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io18(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && (void 0 === input3.cnvGainCutoff || "number" === typeof input3.cnvGainCutoff) && (void 0 === input3.cnvMaxLength || "number" === typeof input3.cnvMaxLength) && (void 0 === input3.cnvMinAbsValue || "number" === typeof input3.cnvMinAbsValue) && (void 0 === input3.cnvLossCutoff || "number" === typeof input3.cnvLossCutoff) && "custom-groupset" === input3.type && ("object" === typeof input3.customset && null !== input3.customset && $io52(input3.customset)) && Array.isArray(input3.dtLst);
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  const $io70 = (input3) => (void 0 === input3.id || "string" === typeof input3.id) && (void 0 === input3.$id || "string" === typeof input3.$id) && (void 0 === input3.isAtomic || true === input3.isAtomic) && true && (void 0 === input3.settings || "object" === typeof input3.settings && null !== input3.settings && false === Array.isArray(input3.settings) && $io44(input3.settings)) && true && (void 0 === input3.minNumSamples || "number" === typeof input3.minNumSamples) && true && "ConditionTW" === input3.type && ("object" === typeof input3.term && null !== input3.term && $io30(input3.term)) && ("object" === typeof input3.q && null !== input3.q && $iu13(input3.q));
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  const $io71 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io18(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && ("discrete" === input3.mode || "binary" === input3.mode || "cuminc" === input3.mode || "cox" === input3.mode) && "grade" === input3.valueFor && true === input3.bar_by_grade && ("age" === input3.timeScale || "time" === input3.timeScale) && (void 0 === input3.breaks || Array.isArray(input3.breaks) && input3.breaks.every((elem) => "number" === typeof elem)) && (void 0 === input3.value_by_max_grade || "boolean" === typeof input3.value_by_max_grade) && (void 0 === input3.value_by_most_recent || "boolean" === typeof input3.value_by_most_recent) && (void 0 === input3.value_by_computable_grade || "boolean" === typeof input3.value_by_computable_grade) && true;
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  const $io72 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io18(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && "discrete" === input3.mode && "children" === input3.valueFor && true === input3.bar_by_children && true;
@@ -3638,6 +3638,10 @@ var validCorrelationVolcanoRequest = (input) => {
3638
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  path: _path2 + ".predefined_groupset_idx",
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  expected: "number",
3640
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  value: input3.predefined_groupset_idx
3641
+ }), Array.isArray(input3.dtLst) || $report(_exceptionable2, {
3642
+ path: _path2 + ".dtLst",
3643
+ expected: "Array<any>",
3644
+ value: input3.dtLst
3641
3645
  })].every((flag) => flag);
3642
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  const $vo68 = (input3, _path2, _exceptionable2 = true) => [void 0 === input3.id || "string" === typeof input3.id || $report(_exceptionable2, {
3643
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  path: _path2 + ".id",
@@ -3732,6 +3736,10 @@ var validCorrelationVolcanoRequest = (input) => {
3732
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  path: _path2 + ".customset",
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  expected: "BaseGroupSet",
3734
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  value: input3.customset
3739
+ }), Array.isArray(input3.dtLst) || $report(_exceptionable2, {
3740
+ path: _path2 + ".dtLst",
3741
+ expected: "Array<any>",
3742
+ value: input3.dtLst
3735
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  })].every((flag) => flag);
3736
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  const $vo70 = (input3, _path2, _exceptionable2 = true) => [void 0 === input3.id || "string" === typeof input3.id || $report(_exceptionable2, {
3737
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  path: _path2 + ".id",
package/dist/{chunk-JKELINOM.js → chunk-CJKG67B2.js} RENAMED
@@ -20,7 +20,11 @@ var runChartPayload = {
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  var validRunChartRequest = (input) => {
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  const errors = [];
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  const __is = (input2) => {
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- const $io0 = (input3) => "string" === typeof input3.genome && "string" === typeof input3.dslabel && ("object" === typeof input3.term && null !== input3.term && "string" === typeof input3.term.id) && ("object" === typeof input3.term2 && null !== input3.term2 && "string" === typeof input3.term2.id) && ("median" === input3.aggregation || "mean" === input3.aggregation || "count" === input3.aggregation) && true && true;
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+ const $io0 = (input3) => "string" === typeof input3.genome && "string" === typeof input3.dslabel && ("object" === typeof input3.xtw && null !== input3.xtw && $io1(input3.xtw)) && ("object" === typeof input3.ytw && null !== input3.ytw && $io4(input3.ytw)) && "median" === input3.aggregation && true && true;
24
+ const $io1 = (input3) => "object" === typeof input3.term && null !== input3.term && "string" === typeof input3.term.id && (void 0 === input3.q || "object" === typeof input3.q && null !== input3.q && false === Array.isArray(input3.q) && $io3(input3.q)) && (void 0 === input3.$id || "string" === typeof input3.$id);
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+ const $io3 = (input3) => void 0 === input3.mode || "discrete" === input3.mode || "continuous" === input3.mode;
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+ const $io4 = (input3) => "object" === typeof input3.term && null !== input3.term && "string" === typeof input3.term.id && (void 0 === input3.q || "object" === typeof input3.q && null !== input3.q && false === Array.isArray(input3.q) && $io6(input3.q)) && (void 0 === input3.$id || "string" === typeof input3.$id);
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+ const $io6 = (input3) => void 0 === input3.mode || "string" === typeof input3.mode;
24
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  return "object" === typeof input2 && null !== input2 && $io0(input2);
25
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  };
26
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  if (false === __is(input)) {
@@ -34,37 +38,89 @@ var validRunChartRequest = (input) => {
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  path: _path2 + ".dslabel",
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  expected: "string",
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  value: input3.dslabel
37
- }), ("object" === typeof input3.term && null !== input3.term || $report(_exceptionable2, {
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- path: _path2 + ".term",
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+ }), ("object" === typeof input3.xtw && null !== input3.xtw || $report(_exceptionable2, {
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+ path: _path2 + ".xtw",
39
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  expected: "__type",
40
- value: input3.term
41
- })) && $vo1(input3.term, _path2 + ".term", _exceptionable2) || $report(_exceptionable2, {
42
- path: _path2 + ".term",
44
+ value: input3.xtw
45
+ })) && $vo1(input3.xtw, _path2 + ".xtw", _exceptionable2) || $report(_exceptionable2, {
46
+ path: _path2 + ".xtw",
43
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  expected: "__type",
44
- value: input3.term
45
- }), ("object" === typeof input3.term2 && null !== input3.term2 || $report(_exceptionable2, {
46
- path: _path2 + ".term2",
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- expected: "__type.o1",
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- value: input3.term2
49
- })) && $vo2(input3.term2, _path2 + ".term2", _exceptionable2) || $report(_exceptionable2, {
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- path: _path2 + ".term2",
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- expected: "__type.o1",
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- value: input3.term2
53
- }), "median" === input3.aggregation || "mean" === input3.aggregation || "count" === input3.aggregation || $report(_exceptionable2, {
48
+ value: input3.xtw
49
+ }), ("object" === typeof input3.ytw && null !== input3.ytw || $report(_exceptionable2, {
50
+ path: _path2 + ".ytw",
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+ expected: "__type.o3",
52
+ value: input3.ytw
53
+ })) && $vo4(input3.ytw, _path2 + ".ytw", _exceptionable2) || $report(_exceptionable2, {
54
+ path: _path2 + ".ytw",
55
+ expected: "__type.o3",
56
+ value: input3.ytw
57
+ }), "median" === input3.aggregation || $report(_exceptionable2, {
54
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  path: _path2 + ".aggregation",
55
- expected: '("count" | "mean" | "median")',
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+ expected: '"median"',
56
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  value: input3.aggregation
57
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  }), true, true].every((flag) => flag);
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- const $vo1 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.id || $report(_exceptionable2, {
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+ const $vo1 = (input3, _path2, _exceptionable2 = true) => [("object" === typeof input3.term && null !== input3.term || $report(_exceptionable2, {
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+ path: _path2 + ".term",
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+ expected: "__type.o1",
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+ value: input3.term
66
+ })) && $vo2(input3.term, _path2 + ".term", _exceptionable2) || $report(_exceptionable2, {
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+ path: _path2 + ".term",
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+ expected: "__type.o1",
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+ value: input3.term
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+ }), void 0 === input3.q || ("object" === typeof input3.q && null !== input3.q && false === Array.isArray(input3.q) || $report(_exceptionable2, {
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+ path: _path2 + ".q",
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+ expected: "(__type.o2 | undefined)",
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+ value: input3.q
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+ })) && $vo3(input3.q, _path2 + ".q", _exceptionable2) || $report(_exceptionable2, {
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+ path: _path2 + ".q",
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+ expected: "(__type.o2 | undefined)",
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+ value: input3.q
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+ }), void 0 === input3.$id || "string" === typeof input3.$id || $report(_exceptionable2, {
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+ path: _path2 + ".$id",
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+ expected: "(string | undefined)",
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+ value: input3.$id
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+ })].every((flag) => flag);
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+ const $vo2 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.id || $report(_exceptionable2, {
59
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  path: _path2 + ".id",
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  expected: "string",
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  value: input3.id
62
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  })].every((flag) => flag);
63
- const $vo2 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.id || $report(_exceptionable2, {
88
+ const $vo3 = (input3, _path2, _exceptionable2 = true) => [void 0 === input3.mode || "discrete" === input3.mode || "continuous" === input3.mode || $report(_exceptionable2, {
89
+ path: _path2 + ".mode",
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+ expected: '("continuous" | "discrete" | undefined)',
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+ value: input3.mode
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+ })].every((flag) => flag);
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+ const $vo4 = (input3, _path2, _exceptionable2 = true) => [("object" === typeof input3.term && null !== input3.term || $report(_exceptionable2, {
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+ path: _path2 + ".term",
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+ expected: "__type.o4",
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+ value: input3.term
97
+ })) && $vo5(input3.term, _path2 + ".term", _exceptionable2) || $report(_exceptionable2, {
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+ path: _path2 + ".term",
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+ expected: "__type.o4",
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+ value: input3.term
101
+ }), void 0 === input3.q || ("object" === typeof input3.q && null !== input3.q && false === Array.isArray(input3.q) || $report(_exceptionable2, {
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+ path: _path2 + ".q",
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+ expected: "(__type.o5 | undefined)",
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+ value: input3.q
105
+ })) && $vo6(input3.q, _path2 + ".q", _exceptionable2) || $report(_exceptionable2, {
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+ path: _path2 + ".q",
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+ expected: "(__type.o5 | undefined)",
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+ value: input3.q
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+ }), void 0 === input3.$id || "string" === typeof input3.$id || $report(_exceptionable2, {
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+ path: _path2 + ".$id",
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+ expected: "(string | undefined)",
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+ value: input3.$id
113
+ })].every((flag) => flag);
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+ const $vo5 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.id || $report(_exceptionable2, {
64
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  path: _path2 + ".id",
65
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  expected: "string",
66
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  value: input3.id
67
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  })].every((flag) => flag);
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+ const $vo6 = (input3, _path2, _exceptionable2 = true) => [void 0 === input3.mode || "string" === typeof input3.mode || $report(_exceptionable2, {
120
+ path: _path2 + ".mode",
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+ expected: "(string | undefined)",
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+ value: input3.mode
123
+ })].every((flag) => flag);
68
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  return ("object" === typeof input2 && null !== input2 || $report(true, {
69
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  path: _path + "",
70
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  expected: "RunChartRequest",
@@ -87,7 +143,7 @@ var validRunChartResponse = (input) => {
87
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  const errors = [];
88
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  const __is = (input2) => {
89
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  const $io0 = (input3) => ("ok" === input3.status || "error" === input3.status) && (Array.isArray(input3.series) && input3.series.every((elem) => "object" === typeof elem && null !== elem && $io1(elem)));
90
- const $io1 = (input3) => "number" === typeof input3.median && (Array.isArray(input3.points) && input3.points.every((elem) => "object" === typeof elem && null !== elem && $io2(elem)));
146
+ const $io1 = (input3) => (void 0 === input3.seriesId || "string" === typeof input3.seriesId) && "number" === typeof input3.median && (Array.isArray(input3.points) && input3.points.every((elem) => "object" === typeof elem && null !== elem && $io2(elem)));
91
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  const $io2 = (input3) => "number" === typeof input3.x && "string" === typeof input3.xName && "number" === typeof input3.y && "number" === typeof input3.sampleCount;
92
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  return "object" === typeof input2 && null !== input2 && $io0(input2);
93
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  };
@@ -115,7 +171,11 @@ var validRunChartResponse = (input) => {
115
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  expected: "Array<__type>",
116
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  value: input3.series
117
173
  })].every((flag) => flag);
118
- const $vo1 = (input3, _path2, _exceptionable2 = true) => ["number" === typeof input3.median || $report(_exceptionable2, {
174
+ const $vo1 = (input3, _path2, _exceptionable2 = true) => [void 0 === input3.seriesId || "string" === typeof input3.seriesId || $report(_exceptionable2, {
175
+ path: _path2 + ".seriesId",
176
+ expected: "(string | undefined)",
177
+ value: input3.seriesId
178
+ }), "number" === typeof input3.median || $report(_exceptionable2, {
119
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  path: _path2 + ".median",
120
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  expected: "number",
121
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  value: input3.median
package/dist/{chunk-HGEP2X66.js → chunk-KXAR65TO.js} RENAMED
@@ -177,9 +177,9 @@ var validBoxPlotRequest = (input) => {
177
177
  const $io64 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "geneVariant" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io11(input3.valueConversion)) && "coord" === input3.kind && "string" === typeof input3.chr && "number" === typeof input3.start && "number" === typeof input3.stop && (Array.isArray(input3.genes) && input3.genes.every((elem) => "object" === typeof elem && null !== elem && $iu2(elem))) && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $io34(input3.groupsetting)) && (Array.isArray(input3.childTerms) && input3.childTerms.every((elem) => "object" === typeof elem && null !== elem && $io30(elem)));
178
178
  const $io65 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io15(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && (void 0 === input3.cnvGainCutoff || "number" === typeof input3.cnvGainCutoff) && (void 0 === input3.cnvMaxLength || "number" === typeof input3.cnvMaxLength) && (void 0 === input3.cnvMinAbsValue || "number" === typeof input3.cnvMinAbsValue) && (void 0 === input3.cnvLossCutoff || "number" === typeof input3.cnvLossCutoff) && "values" === input3.type;
179
179
  const $io66 = (input3) => (void 0 === input3.id || "string" === typeof input3.id) && (void 0 === input3.$id || "string" === typeof input3.$id) && (void 0 === input3.isAtomic || true === input3.isAtomic) && true && (void 0 === input3.settings || "object" === typeof input3.settings && null !== input3.settings && false === Array.isArray(input3.settings) && $io2(input3.settings)) && true && (void 0 === input3.minNumSamples || "number" === typeof input3.minNumSamples) && true && "GvPredefinedGsTW" === input3.type && ("object" === typeof input3.term && null !== input3.term && $iu12(input3.term)) && ("object" === typeof input3.q && null !== input3.q && $io67(input3.q));
180
- const $io67 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io15(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && (void 0 === input3.cnvGainCutoff || "number" === typeof input3.cnvGainCutoff) && (void 0 === input3.cnvMaxLength || "number" === typeof input3.cnvMaxLength) && (void 0 === input3.cnvMinAbsValue || "number" === typeof input3.cnvMinAbsValue) && (void 0 === input3.cnvLossCutoff || "number" === typeof input3.cnvLossCutoff) && "predefined-groupset" === input3.type && "number" === typeof input3.predefined_groupset_idx;
180
+ const $io67 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io15(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && (void 0 === input3.cnvGainCutoff || "number" === typeof input3.cnvGainCutoff) && (void 0 === input3.cnvMaxLength || "number" === typeof input3.cnvMaxLength) && (void 0 === input3.cnvMinAbsValue || "number" === typeof input3.cnvMinAbsValue) && (void 0 === input3.cnvLossCutoff || "number" === typeof input3.cnvLossCutoff) && "predefined-groupset" === input3.type && "number" === typeof input3.predefined_groupset_idx && Array.isArray(input3.dtLst);
181
181
  const $io68 = (input3) => (void 0 === input3.id || "string" === typeof input3.id) && (void 0 === input3.$id || "string" === typeof input3.$id) && (void 0 === input3.isAtomic || true === input3.isAtomic) && true && (void 0 === input3.settings || "object" === typeof input3.settings && null !== input3.settings && false === Array.isArray(input3.settings) && $io2(input3.settings)) && true && (void 0 === input3.minNumSamples || "number" === typeof input3.minNumSamples) && true && "GvCustomGsTW" === input3.type && ("object" === typeof input3.term && null !== input3.term && $iu12(input3.term)) && ("object" === typeof input3.q && null !== input3.q && $io69(input3.q));
182
- const $io69 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io15(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && (void 0 === input3.cnvGainCutoff || "number" === typeof input3.cnvGainCutoff) && (void 0 === input3.cnvMaxLength || "number" === typeof input3.cnvMaxLength) && (void 0 === input3.cnvMinAbsValue || "number" === typeof input3.cnvMinAbsValue) && (void 0 === input3.cnvLossCutoff || "number" === typeof input3.cnvLossCutoff) && "custom-groupset" === input3.type && ("object" === typeof input3.customset && null !== input3.customset && $io52(input3.customset));
182
+ const $io69 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io15(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && (void 0 === input3.cnvGainCutoff || "number" === typeof input3.cnvGainCutoff) && (void 0 === input3.cnvMaxLength || "number" === typeof input3.cnvMaxLength) && (void 0 === input3.cnvMinAbsValue || "number" === typeof input3.cnvMinAbsValue) && (void 0 === input3.cnvLossCutoff || "number" === typeof input3.cnvLossCutoff) && "custom-groupset" === input3.type && ("object" === typeof input3.customset && null !== input3.customset && $io52(input3.customset)) && Array.isArray(input3.dtLst);
183
183
  const $io70 = (input3) => (void 0 === input3.id || "string" === typeof input3.id) && (void 0 === input3.$id || "string" === typeof input3.$id) && (void 0 === input3.isAtomic || true === input3.isAtomic) && true && (void 0 === input3.settings || "object" === typeof input3.settings && null !== input3.settings && false === Array.isArray(input3.settings) && $io2(input3.settings)) && true && (void 0 === input3.minNumSamples || "number" === typeof input3.minNumSamples) && true && "ConditionTW" === input3.type && ("object" === typeof input3.term && null !== input3.term && $io27(input3.term)) && ("object" === typeof input3.q && null !== input3.q && $iu13(input3.q));
184
184
  const $io71 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io15(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && ("discrete" === input3.mode || "binary" === input3.mode || "cuminc" === input3.mode || "cox" === input3.mode) && "grade" === input3.valueFor && true === input3.bar_by_grade && ("age" === input3.timeScale || "time" === input3.timeScale) && (void 0 === input3.breaks || Array.isArray(input3.breaks) && input3.breaks.every((elem) => "number" === typeof elem)) && (void 0 === input3.value_by_max_grade || "boolean" === typeof input3.value_by_max_grade) && (void 0 === input3.value_by_most_recent || "boolean" === typeof input3.value_by_most_recent) && (void 0 === input3.value_by_computable_grade || "boolean" === typeof input3.value_by_computable_grade) && true;
185
185
  const $io72 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io15(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && "discrete" === input3.mode && "children" === input3.valueFor && true === input3.bar_by_children && true;
@@ -3701,6 +3701,10 @@ var validBoxPlotRequest = (input) => {
3701
3701
  path: _path2 + ".predefined_groupset_idx",
3702
3702
  expected: "number",
3703
3703
  value: input3.predefined_groupset_idx
3704
+ }), Array.isArray(input3.dtLst) || $report(_exceptionable2, {
3705
+ path: _path2 + ".dtLst",
3706
+ expected: "Array<any>",
3707
+ value: input3.dtLst
3704
3708
  })].every((flag) => flag);
3705
3709
  const $vo68 = (input3, _path2, _exceptionable2 = true) => [void 0 === input3.id || "string" === typeof input3.id || $report(_exceptionable2, {
3706
3710
  path: _path2 + ".id",
@@ -3795,6 +3799,10 @@ var validBoxPlotRequest = (input) => {
3795
3799
  path: _path2 + ".customset",
3796
3800
  expected: "BaseGroupSet",
3797
3801
  value: input3.customset
3802
+ }), Array.isArray(input3.dtLst) || $report(_exceptionable2, {
3803
+ path: _path2 + ".dtLst",
3804
+ expected: "Array<any>",
3805
+ value: input3.dtLst
3798
3806
  })].every((flag) => flag);
3799
3807
  const $vo70 = (input3, _path2, _exceptionable2 = true) => [void 0 === input3.id || "string" === typeof input3.id || $report(_exceptionable2, {
3800
3808
  path: _path2 + ".id",
package/dist/{chunk-AR3AKHJS.js → chunk-LKRDK6V6.js} RENAMED
@@ -162,9 +162,9 @@ var validCategoriesRequest = (input) => {
162
162
  const $io64 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "geneVariant" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io11(input3.valueConversion)) && "coord" === input3.kind && "string" === typeof input3.chr && "number" === typeof input3.start && "number" === typeof input3.stop && (Array.isArray(input3.genes) && input3.genes.every((elem) => "object" === typeof elem && null !== elem && $iu2(elem))) && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $io34(input3.groupsetting)) && (Array.isArray(input3.childTerms) && input3.childTerms.every((elem) => "object" === typeof elem && null !== elem && $io30(elem)));
163
163
  const $io65 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io15(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && (void 0 === input3.cnvGainCutoff || "number" === typeof input3.cnvGainCutoff) && (void 0 === input3.cnvMaxLength || "number" === typeof input3.cnvMaxLength) && (void 0 === input3.cnvMinAbsValue || "number" === typeof input3.cnvMinAbsValue) && (void 0 === input3.cnvLossCutoff || "number" === typeof input3.cnvLossCutoff) && "values" === input3.type;
164
164
  const $io66 = (input3) => (void 0 === input3.id || "string" === typeof input3.id) && (void 0 === input3.$id || "string" === typeof input3.$id) && (void 0 === input3.isAtomic || true === input3.isAtomic) && true && (void 0 === input3.settings || "object" === typeof input3.settings && null !== input3.settings && false === Array.isArray(input3.settings) && $io2(input3.settings)) && true && (void 0 === input3.minNumSamples || "number" === typeof input3.minNumSamples) && true && "GvPredefinedGsTW" === input3.type && ("object" === typeof input3.term && null !== input3.term && $iu12(input3.term)) && ("object" === typeof input3.q && null !== input3.q && $io67(input3.q));
165
- const $io67 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io15(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && (void 0 === input3.cnvGainCutoff || "number" === typeof input3.cnvGainCutoff) && (void 0 === input3.cnvMaxLength || "number" === typeof input3.cnvMaxLength) && (void 0 === input3.cnvMinAbsValue || "number" === typeof input3.cnvMinAbsValue) && (void 0 === input3.cnvLossCutoff || "number" === typeof input3.cnvLossCutoff) && "predefined-groupset" === input3.type && "number" === typeof input3.predefined_groupset_idx;
165
+ const $io67 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io15(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && (void 0 === input3.cnvGainCutoff || "number" === typeof input3.cnvGainCutoff) && (void 0 === input3.cnvMaxLength || "number" === typeof input3.cnvMaxLength) && (void 0 === input3.cnvMinAbsValue || "number" === typeof input3.cnvMinAbsValue) && (void 0 === input3.cnvLossCutoff || "number" === typeof input3.cnvLossCutoff) && "predefined-groupset" === input3.type && "number" === typeof input3.predefined_groupset_idx && Array.isArray(input3.dtLst);
166
166
  const $io68 = (input3) => (void 0 === input3.id || "string" === typeof input3.id) && (void 0 === input3.$id || "string" === typeof input3.$id) && (void 0 === input3.isAtomic || true === input3.isAtomic) && true && (void 0 === input3.settings || "object" === typeof input3.settings && null !== input3.settings && false === Array.isArray(input3.settings) && $io2(input3.settings)) && true && (void 0 === input3.minNumSamples || "number" === typeof input3.minNumSamples) && true && "GvCustomGsTW" === input3.type && ("object" === typeof input3.term && null !== input3.term && $iu12(input3.term)) && ("object" === typeof input3.q && null !== input3.q && $io69(input3.q));
167
- const $io69 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io15(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && (void 0 === input3.cnvGainCutoff || "number" === typeof input3.cnvGainCutoff) && (void 0 === input3.cnvMaxLength || "number" === typeof input3.cnvMaxLength) && (void 0 === input3.cnvMinAbsValue || "number" === typeof input3.cnvMinAbsValue) && (void 0 === input3.cnvLossCutoff || "number" === typeof input3.cnvLossCutoff) && "custom-groupset" === input3.type && ("object" === typeof input3.customset && null !== input3.customset && $io52(input3.customset));
167
+ const $io69 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io15(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && (void 0 === input3.cnvGainCutoff || "number" === typeof input3.cnvGainCutoff) && (void 0 === input3.cnvMaxLength || "number" === typeof input3.cnvMaxLength) && (void 0 === input3.cnvMinAbsValue || "number" === typeof input3.cnvMinAbsValue) && (void 0 === input3.cnvLossCutoff || "number" === typeof input3.cnvLossCutoff) && "custom-groupset" === input3.type && ("object" === typeof input3.customset && null !== input3.customset && $io52(input3.customset)) && Array.isArray(input3.dtLst);
168
168
  const $io70 = (input3) => (void 0 === input3.id || "string" === typeof input3.id) && (void 0 === input3.$id || "string" === typeof input3.$id) && (void 0 === input3.isAtomic || true === input3.isAtomic) && true && (void 0 === input3.settings || "object" === typeof input3.settings && null !== input3.settings && false === Array.isArray(input3.settings) && $io2(input3.settings)) && true && (void 0 === input3.minNumSamples || "number" === typeof input3.minNumSamples) && true && "ConditionTW" === input3.type && ("object" === typeof input3.term && null !== input3.term && $io27(input3.term)) && ("object" === typeof input3.q && null !== input3.q && $iu13(input3.q));
169
169
  const $io71 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io15(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && ("discrete" === input3.mode || "binary" === input3.mode || "cuminc" === input3.mode || "cox" === input3.mode) && "grade" === input3.valueFor && true === input3.bar_by_grade && ("age" === input3.timeScale || "time" === input3.timeScale) && (void 0 === input3.breaks || Array.isArray(input3.breaks) && input3.breaks.every((elem) => "number" === typeof elem)) && (void 0 === input3.value_by_max_grade || "boolean" === typeof input3.value_by_max_grade) && (void 0 === input3.value_by_most_recent || "boolean" === typeof input3.value_by_most_recent) && (void 0 === input3.value_by_computable_grade || "boolean" === typeof input3.value_by_computable_grade) && true;
170
170
  const $io72 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io15(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && "discrete" === input3.mode && "children" === input3.valueFor && true === input3.bar_by_children && true;
@@ -3679,6 +3679,10 @@ var validCategoriesRequest = (input) => {
3679
3679
  path: _path2 + ".predefined_groupset_idx",
3680
3680
  expected: "number",
3681
3681
  value: input3.predefined_groupset_idx
3682
+ }), Array.isArray(input3.dtLst) || $report(_exceptionable2, {
3683
+ path: _path2 + ".dtLst",
3684
+ expected: "Array<any>",
3685
+ value: input3.dtLst
3682
3686
  })].every((flag) => flag);
3683
3687
  const $vo68 = (input3, _path2, _exceptionable2 = true) => [void 0 === input3.id || "string" === typeof input3.id || $report(_exceptionable2, {
3684
3688
  path: _path2 + ".id",
@@ -3773,6 +3777,10 @@ var validCategoriesRequest = (input) => {
3773
3777
  path: _path2 + ".customset",
3774
3778
  expected: "BaseGroupSet",
3775
3779
  value: input3.customset
3780
+ }), Array.isArray(input3.dtLst) || $report(_exceptionable2, {
3781
+ path: _path2 + ".dtLst",
3782
+ expected: "Array<any>",
3783
+ value: input3.dtLst
3776
3784
  })].every((flag) => flag);
3777
3785
  const $vo70 = (input3, _path2, _exceptionable2 = true) => [void 0 === input3.id || "string" === typeof input3.id || $report(_exceptionable2, {
3778
3786
  path: _path2 + ".id",
package/dist/{chunk-WBFZCBLP.js → chunk-OIQOK4UP.js} RENAMED
@@ -162,9 +162,9 @@ var validDescrStatsRequest = (input) => {
162
162
  const $io64 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "geneVariant" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io11(input3.valueConversion)) && "coord" === input3.kind && "string" === typeof input3.chr && "number" === typeof input3.start && "number" === typeof input3.stop && (Array.isArray(input3.genes) && input3.genes.every((elem) => "object" === typeof elem && null !== elem && $iu2(elem))) && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $io34(input3.groupsetting)) && (Array.isArray(input3.childTerms) && input3.childTerms.every((elem) => "object" === typeof elem && null !== elem && $io30(elem)));
163
163
  const $io65 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io15(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && (void 0 === input3.cnvGainCutoff || "number" === typeof input3.cnvGainCutoff) && (void 0 === input3.cnvMaxLength || "number" === typeof input3.cnvMaxLength) && (void 0 === input3.cnvMinAbsValue || "number" === typeof input3.cnvMinAbsValue) && (void 0 === input3.cnvLossCutoff || "number" === typeof input3.cnvLossCutoff) && "values" === input3.type;
164
164
  const $io66 = (input3) => (void 0 === input3.id || "string" === typeof input3.id) && (void 0 === input3.$id || "string" === typeof input3.$id) && (void 0 === input3.isAtomic || true === input3.isAtomic) && true && (void 0 === input3.settings || "object" === typeof input3.settings && null !== input3.settings && false === Array.isArray(input3.settings) && $io2(input3.settings)) && true && (void 0 === input3.minNumSamples || "number" === typeof input3.minNumSamples) && true && "GvPredefinedGsTW" === input3.type && ("object" === typeof input3.term && null !== input3.term && $iu12(input3.term)) && ("object" === typeof input3.q && null !== input3.q && $io67(input3.q));
165
- const $io67 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io15(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && (void 0 === input3.cnvGainCutoff || "number" === typeof input3.cnvGainCutoff) && (void 0 === input3.cnvMaxLength || "number" === typeof input3.cnvMaxLength) && (void 0 === input3.cnvMinAbsValue || "number" === typeof input3.cnvMinAbsValue) && (void 0 === input3.cnvLossCutoff || "number" === typeof input3.cnvLossCutoff) && "predefined-groupset" === input3.type && "number" === typeof input3.predefined_groupset_idx;
165
+ const $io67 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io15(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && (void 0 === input3.cnvGainCutoff || "number" === typeof input3.cnvGainCutoff) && (void 0 === input3.cnvMaxLength || "number" === typeof input3.cnvMaxLength) && (void 0 === input3.cnvMinAbsValue || "number" === typeof input3.cnvMinAbsValue) && (void 0 === input3.cnvLossCutoff || "number" === typeof input3.cnvLossCutoff) && "predefined-groupset" === input3.type && "number" === typeof input3.predefined_groupset_idx && Array.isArray(input3.dtLst);
166
166
  const $io68 = (input3) => (void 0 === input3.id || "string" === typeof input3.id) && (void 0 === input3.$id || "string" === typeof input3.$id) && (void 0 === input3.isAtomic || true === input3.isAtomic) && true && (void 0 === input3.settings || "object" === typeof input3.settings && null !== input3.settings && false === Array.isArray(input3.settings) && $io2(input3.settings)) && true && (void 0 === input3.minNumSamples || "number" === typeof input3.minNumSamples) && true && "GvCustomGsTW" === input3.type && ("object" === typeof input3.term && null !== input3.term && $iu12(input3.term)) && ("object" === typeof input3.q && null !== input3.q && $io69(input3.q));
167
- const $io69 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io15(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && (void 0 === input3.cnvGainCutoff || "number" === typeof input3.cnvGainCutoff) && (void 0 === input3.cnvMaxLength || "number" === typeof input3.cnvMaxLength) && (void 0 === input3.cnvMinAbsValue || "number" === typeof input3.cnvMinAbsValue) && (void 0 === input3.cnvLossCutoff || "number" === typeof input3.cnvLossCutoff) && "custom-groupset" === input3.type && ("object" === typeof input3.customset && null !== input3.customset && $io52(input3.customset));
167
+ const $io69 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io15(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && (void 0 === input3.cnvGainCutoff || "number" === typeof input3.cnvGainCutoff) && (void 0 === input3.cnvMaxLength || "number" === typeof input3.cnvMaxLength) && (void 0 === input3.cnvMinAbsValue || "number" === typeof input3.cnvMinAbsValue) && (void 0 === input3.cnvLossCutoff || "number" === typeof input3.cnvLossCutoff) && "custom-groupset" === input3.type && ("object" === typeof input3.customset && null !== input3.customset && $io52(input3.customset)) && Array.isArray(input3.dtLst);
168
168
  const $io70 = (input3) => (void 0 === input3.id || "string" === typeof input3.id) && (void 0 === input3.$id || "string" === typeof input3.$id) && (void 0 === input3.isAtomic || true === input3.isAtomic) && true && (void 0 === input3.settings || "object" === typeof input3.settings && null !== input3.settings && false === Array.isArray(input3.settings) && $io2(input3.settings)) && true && (void 0 === input3.minNumSamples || "number" === typeof input3.minNumSamples) && true && "ConditionTW" === input3.type && ("object" === typeof input3.term && null !== input3.term && $io27(input3.term)) && ("object" === typeof input3.q && null !== input3.q && $iu13(input3.q));
169
169
  const $io71 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io15(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && ("discrete" === input3.mode || "binary" === input3.mode || "cuminc" === input3.mode || "cox" === input3.mode) && "grade" === input3.valueFor && true === input3.bar_by_grade && ("age" === input3.timeScale || "time" === input3.timeScale) && (void 0 === input3.breaks || Array.isArray(input3.breaks) && input3.breaks.every((elem) => "number" === typeof elem)) && (void 0 === input3.value_by_max_grade || "boolean" === typeof input3.value_by_max_grade) && (void 0 === input3.value_by_most_recent || "boolean" === typeof input3.value_by_most_recent) && (void 0 === input3.value_by_computable_grade || "boolean" === typeof input3.value_by_computable_grade) && true;
170
170
  const $io72 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io15(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && "discrete" === input3.mode && "children" === input3.valueFor && true === input3.bar_by_children && true;
@@ -3662,6 +3662,10 @@ var validDescrStatsRequest = (input) => {
3662
3662
  path: _path2 + ".predefined_groupset_idx",
3663
3663
  expected: "number",
3664
3664
  value: input3.predefined_groupset_idx
3665
+ }), Array.isArray(input3.dtLst) || $report(_exceptionable2, {
3666
+ path: _path2 + ".dtLst",
3667
+ expected: "Array<any>",
3668
+ value: input3.dtLst
3665
3669
  })].every((flag) => flag);
3666
3670
  const $vo68 = (input3, _path2, _exceptionable2 = true) => [void 0 === input3.id || "string" === typeof input3.id || $report(_exceptionable2, {
3667
3671
  path: _path2 + ".id",
@@ -3756,6 +3760,10 @@ var validDescrStatsRequest = (input) => {
3756
3760
  path: _path2 + ".customset",
3757
3761
  expected: "BaseGroupSet",
3758
3762
  value: input3.customset
3763
+ }), Array.isArray(input3.dtLst) || $report(_exceptionable2, {
3764
+ path: _path2 + ".dtLst",
3765
+ expected: "Array<any>",
3766
+ value: input3.dtLst
3759
3767
  })].every((flag) => flag);
3760
3768
  const $vo70 = (input3, _path2, _exceptionable2 = true) => [void 0 === input3.id || "string" === typeof input3.id || $report(_exceptionable2, {
3761
3769
  path: _path2 + ".id",
package/dist/{chunk-INOXLGIG.js → chunk-YIF5KN5P.js} RENAMED
@@ -186,9 +186,9 @@ var validTermsByIdsResponse = (input) => {
186
186
  const $io65 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "geneVariant" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io5(input3.values)) && (void 0 === input3.skipValuesBuild || "boolean" === typeof input3.skipValuesBuild) && (void 0 === input3.valueConversion || "object" === typeof input3.valueConversion && null !== input3.valueConversion && $io12(input3.valueConversion)) && "coord" === input3.kind && "string" === typeof input3.chr && "number" === typeof input3.start && "number" === typeof input3.stop && (Array.isArray(input3.genes) && input3.genes.every((elem) => "object" === typeof elem && null !== elem && $iu2(elem))) && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $io35(input3.groupsetting)) && (Array.isArray(input3.childTerms) && input3.childTerms.every((elem) => "object" === typeof elem && null !== elem && $io31(elem)));
187
187
  const $io66 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io16(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && (void 0 === input3.cnvGainCutoff || "number" === typeof input3.cnvGainCutoff) && (void 0 === input3.cnvMaxLength || "number" === typeof input3.cnvMaxLength) && (void 0 === input3.cnvMinAbsValue || "number" === typeof input3.cnvMinAbsValue) && (void 0 === input3.cnvLossCutoff || "number" === typeof input3.cnvLossCutoff) && "values" === input3.type;
188
188
  const $io67 = (input3) => (void 0 === input3.id || "string" === typeof input3.id) && (void 0 === input3.$id || "string" === typeof input3.$id) && (void 0 === input3.isAtomic || true === input3.isAtomic) && true && (void 0 === input3.settings || "object" === typeof input3.settings && null !== input3.settings && false === Array.isArray(input3.settings) && $io3(input3.settings)) && true && (void 0 === input3.minNumSamples || "number" === typeof input3.minNumSamples) && true && "GvPredefinedGsTW" === input3.type && ("object" === typeof input3.term && null !== input3.term && $iu12(input3.term)) && ("object" === typeof input3.q && null !== input3.q && $io68(input3.q));
189
- const $io68 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io16(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && (void 0 === input3.cnvGainCutoff || "number" === typeof input3.cnvGainCutoff) && (void 0 === input3.cnvMaxLength || "number" === typeof input3.cnvMaxLength) && (void 0 === input3.cnvMinAbsValue || "number" === typeof input3.cnvMinAbsValue) && (void 0 === input3.cnvLossCutoff || "number" === typeof input3.cnvLossCutoff) && "predefined-groupset" === input3.type && "number" === typeof input3.predefined_groupset_idx;
189
+ const $io68 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io16(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && (void 0 === input3.cnvGainCutoff || "number" === typeof input3.cnvGainCutoff) && (void 0 === input3.cnvMaxLength || "number" === typeof input3.cnvMaxLength) && (void 0 === input3.cnvMinAbsValue || "number" === typeof input3.cnvMinAbsValue) && (void 0 === input3.cnvLossCutoff || "number" === typeof input3.cnvLossCutoff) && "predefined-groupset" === input3.type && "number" === typeof input3.predefined_groupset_idx && Array.isArray(input3.dtLst);
190
190
  const $io69 = (input3) => (void 0 === input3.id || "string" === typeof input3.id) && (void 0 === input3.$id || "string" === typeof input3.$id) && (void 0 === input3.isAtomic || true === input3.isAtomic) && true && (void 0 === input3.settings || "object" === typeof input3.settings && null !== input3.settings && false === Array.isArray(input3.settings) && $io3(input3.settings)) && true && (void 0 === input3.minNumSamples || "number" === typeof input3.minNumSamples) && true && "GvCustomGsTW" === input3.type && ("object" === typeof input3.term && null !== input3.term && $iu12(input3.term)) && ("object" === typeof input3.q && null !== input3.q && $io70(input3.q));
191
- const $io70 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io16(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && (void 0 === input3.cnvGainCutoff || "number" === typeof input3.cnvGainCutoff) && (void 0 === input3.cnvMaxLength || "number" === typeof input3.cnvMaxLength) && (void 0 === input3.cnvMinAbsValue || "number" === typeof input3.cnvMinAbsValue) && (void 0 === input3.cnvLossCutoff || "number" === typeof input3.cnvLossCutoff) && "custom-groupset" === input3.type && ("object" === typeof input3.customset && null !== input3.customset && $io53(input3.customset));
191
+ const $io70 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io16(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && (void 0 === input3.cnvGainCutoff || "number" === typeof input3.cnvGainCutoff) && (void 0 === input3.cnvMaxLength || "number" === typeof input3.cnvMaxLength) && (void 0 === input3.cnvMinAbsValue || "number" === typeof input3.cnvMinAbsValue) && (void 0 === input3.cnvLossCutoff || "number" === typeof input3.cnvLossCutoff) && "custom-groupset" === input3.type && ("object" === typeof input3.customset && null !== input3.customset && $io53(input3.customset)) && Array.isArray(input3.dtLst);
192
192
  const $io71 = (input3) => (void 0 === input3.id || "string" === typeof input3.id) && (void 0 === input3.$id || "string" === typeof input3.$id) && (void 0 === input3.isAtomic || true === input3.isAtomic) && true && (void 0 === input3.settings || "object" === typeof input3.settings && null !== input3.settings && false === Array.isArray(input3.settings) && $io3(input3.settings)) && true && (void 0 === input3.minNumSamples || "number" === typeof input3.minNumSamples) && true && "ConditionTW" === input3.type && ("object" === typeof input3.term && null !== input3.term && $io28(input3.term)) && ("object" === typeof input3.q && null !== input3.q && $iu13(input3.q));
193
193
  const $io72 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io16(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && ("discrete" === input3.mode || "binary" === input3.mode || "cuminc" === input3.mode || "cox" === input3.mode) && "grade" === input3.valueFor && true === input3.bar_by_grade && ("age" === input3.timeScale || "time" === input3.timeScale) && (void 0 === input3.breaks || Array.isArray(input3.breaks) && input3.breaks.every((elem) => "number" === typeof elem)) && (void 0 === input3.value_by_max_grade || "boolean" === typeof input3.value_by_max_grade) && (void 0 === input3.value_by_most_recent || "boolean" === typeof input3.value_by_most_recent) && (void 0 === input3.value_by_computable_grade || "boolean" === typeof input3.value_by_computable_grade) && true;
194
194
  const $io73 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io16(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && "discrete" === input3.mode && "children" === input3.valueFor && true === input3.bar_by_children && true;
@@ -3678,6 +3678,10 @@ var validTermsByIdsResponse = (input) => {
3678
3678
  path: _path2 + ".predefined_groupset_idx",
3679
3679
  expected: "number",
3680
3680
  value: input3.predefined_groupset_idx
3681
+ }), Array.isArray(input3.dtLst) || $report(_exceptionable2, {
3682
+ path: _path2 + ".dtLst",
3683
+ expected: "Array<any>",
3684
+ value: input3.dtLst
3681
3685
  })].every((flag) => flag);
3682
3686
  const $vo69 = (input3, _path2, _exceptionable2 = true) => [void 0 === input3.id || "string" === typeof input3.id || $report(_exceptionable2, {
3683
3687
  path: _path2 + ".id",
@@ -3772,6 +3776,10 @@ var validTermsByIdsResponse = (input) => {
3772
3776
  path: _path2 + ".customset",
3773
3777
  expected: "BaseGroupSet",
3774
3778
  value: input3.customset
3779
+ }), Array.isArray(input3.dtLst) || $report(_exceptionable2, {
3780
+ path: _path2 + ".dtLst",
3781
+ expected: "Array<any>",
3782
+ value: input3.dtLst
3775
3783
  })].every((flag) => flag);
3776
3784
  const $vo71 = (input3, _path2, _exceptionable2 = true) => [void 0 === input3.id || "string" === typeof input3.id || $report(_exceptionable2, {
3777
3785
  path: _path2 + ".id",
package/dist/correlationVolcano.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  CorrelationVolcanoPayload,
3
3
  validCorrelationVolcanoRequest,
4
4
  validCorrelationVolcanoResponse
5
- } from "./chunk-YL3WWIZ5.js";
5
+ } from "./chunk-7LV73FRY.js";
6
6
  import "./chunk-YNHC5SXO.js";
7
7
  export {
8
8
  CorrelationVolcanoPayload,
package/dist/index.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  termsByIdsPayload,
3
3
  validTermsByIdsRequest,
4
4
  validTermsByIdsResponse
5
- } from "./chunk-INOXLGIG.js";
5
+ } from "./chunk-YIF5KN5P.js";
6
6
  import {
7
7
  topMutatedGenePayload,
8
8
  validtopMutatedGeneRequest,
@@ -42,7 +42,7 @@ import {
42
42
  runChartPayload,
43
43
  validRunChartRequest,
44
44
  validRunChartResponse
45
- } from "./chunk-JKELINOM.js";
45
+ } from "./chunk-CJKG67B2.js";
46
46
  import {
47
47
  termdbSampleImagesPayload,
48
48
  validTermdbSampleImagesRequest,
@@ -87,7 +87,7 @@ import {
87
87
  descrStatsPayload,
88
88
  validDescrStatsRequest,
89
89
  validDescrStatsResponse
90
- } from "./chunk-WBFZCBLP.js";
90
+ } from "./chunk-OIQOK4UP.js";
91
91
  import {
92
92
  FilterTermValuesPayload,
93
93
  validFilterTermValuesRequest,
@@ -137,12 +137,12 @@ import {
137
137
  boxplotPayload,
138
138
  validBoxPlotRequest,
139
139
  validBoxPlotResponse
140
- } from "./chunk-HGEP2X66.js";
140
+ } from "./chunk-KXAR65TO.js";
141
141
  import {
142
142
  termdbCategoriesPayload,
143
143
  validCategoriesRequest,
144
144
  validCategoriesResponse
145
- } from "./chunk-AR3AKHJS.js";
145
+ } from "./chunk-LKRDK6V6.js";
146
146
  import {
147
147
  ChatPayload,
148
148
  validChatRequest,
@@ -244,7 +244,7 @@ import {
244
244
  CorrelationVolcanoPayload,
245
245
  validCorrelationVolcanoRequest,
246
246
  validCorrelationVolcanoResponse
247
- } from "./chunk-YL3WWIZ5.js";
247
+ } from "./chunk-7LV73FRY.js";
248
248
  import {
249
249
  datasetPayload,
250
250
  validDatasetRequest,
package/dist/termdb.boxplot.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  boxplotPayload,
3
3
  validBoxPlotRequest,
4
4
  validBoxPlotResponse
5
- } from "./chunk-HGEP2X66.js";
5
+ } from "./chunk-KXAR65TO.js";
6
6
  import "./chunk-YNHC5SXO.js";
7
7
  export {
8
8
  boxplotPayload,
package/dist/termdb.categories.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  termdbCategoriesPayload,
3
3
  validCategoriesRequest,
4
4
  validCategoriesResponse
5
- } from "./chunk-AR3AKHJS.js";
5
+ } from "./chunk-LKRDK6V6.js";
6
6
  import "./chunk-YNHC5SXO.js";
7
7
  export {
8
8
  termdbCategoriesPayload,
package/dist/termdb.descrstats.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  descrStatsPayload,
3
3
  validDescrStatsRequest,
4
4
  validDescrStatsResponse
5
- } from "./chunk-WBFZCBLP.js";
5
+ } from "./chunk-OIQOK4UP.js";
6
6
  import "./chunk-YNHC5SXO.js";
7
7
  export {
8
8
  descrStatsPayload,
package/dist/termdb.runChart.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  runChartPayload,
3
3
  validRunChartRequest,
4
4
  validRunChartResponse
5
- } from "./chunk-JKELINOM.js";
5
+ } from "./chunk-CJKG67B2.js";
6
6
  import "./chunk-YNHC5SXO.js";
7
7
  export {
8
8
  runChartPayload,
package/dist/termdb.termsbyids.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  termsByIdsPayload,
3
3
  validTermsByIdsRequest,
4
4
  validTermsByIdsResponse
5
- } from "./chunk-INOXLGIG.js";
5
+ } from "./chunk-YIF5KN5P.js";
6
6
  import "./chunk-YNHC5SXO.js";
7
7
  export {
8
8
  termsByIdsPayload,
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@sjcrh/proteinpaint-types",
3
- "version": "2.174.0",
3
+ "version": "2.175.0",
4
4
  "type": "module",
5
5
  "description": "Shared type definitions between ProteinPaint server and client code",
6
6
  "main": "src/index.ts",
package/src/dataset.ts CHANGED
@@ -1587,6 +1587,8 @@ keep this setting here for reason of:
1587
1587
  /** key is string as disease/survial etc, value is tw */
1588
1588
  [index: string]: Tw
1589
1589
  }
1590
+ /** maximum number of genes to query in geneVariant gene set */
1591
+ maxGeneVariantGeneSetSize?: number
1590
1592
  //terms are shown in the dictionary based on term and user role.
1591
1593
  isTermVisible?: (clientAuthResult: any, ids: string) => boolean
1592
1594
  hiddenIds?: string[]
package/src/routes/termdb.chat.ts CHANGED
@@ -18,11 +18,12 @@ type HtmlResponse = {
18
18
  }
19
19
  export type PlotResponse = {
20
20
  type: 'plot'
21
- /** plot state. Currently only supports summary chart, will add other chart types later */
22
21
  plot: object
23
22
  /** Specifies what action to take e.g. Summary plot or no action. Will add more chart types later */
24
23
  }
25
24
 
25
+ export type LlmConfig = { provider: 'SJ' | 'ollama'; api: string; modelName: string }
26
+
26
27
  export type ChatResponse = HtmlResponse | PlotResponse
27
28
 
28
29
  export const ChatPayload: RoutePayload = {
@@ -42,6 +43,8 @@ export type SummaryType = {
42
43
  term2?: string
43
44
  /** Optional simple filter terms */
44
45
  simpleFilter: FilterTerm[]
46
+ /** Optional explicit child type requested by the user. If omitted, the logic of the data types picks the child type. */
47
+ childType?: 'violin' | 'boxplot' | 'sampleScatter' | 'barchart'
45
48
  }
46
49
 
47
50
  export type FilterTerm =
@@ -101,7 +104,7 @@ export type plot_type = {
101
104
  /** When type == plot, show the corresponding plot in the plot field */
102
105
  type: 'plot'
103
106
  /** The type of plot to be displayed on the UI. */
104
- plot: 'summary' | 'dge' | 'none' | 'survival'
107
+ plot: 'summary' | 'dge' | 'none' | 'survival' | 'matrix'
105
108
  }
106
109
 
107
110
  export type DEType = {
@@ -112,3 +115,12 @@ export type DEType = {
112
115
  /** Method used for carrying out differential gene expression analysis */
113
116
  method?: 'edgeR' | 'limma' | 'wilcoxon'
114
117
  }
118
+
119
+ export type MatrixType = {
120
+ /** Names of dictionary terms to include as rows in the matrix (e.g. "Diagnosis", "Gender", "Race") */
121
+ terms?: string[]
122
+ /** Names of genes to include as gene variant rows in the matrix (e.g. "TP53", "KRAS", "NRAS") */
123
+ geneNames?: string[]
124
+ /** Optional simple filter terms to restrict the sample set */
125
+ simpleFilter?: FilterTerm[]
126
+ }
package/src/routes/termdb.runChart.ts CHANGED
@@ -3,15 +3,15 @@ import type { RoutePayload } from './routeApi.ts'
3
3
  export type RunChartRequest = {
4
4
  genome: string
5
5
  dslabel: string
6
- /** date term for x axis */
7
- term: {
8
- id: string
9
- }
10
- /** timeline/duration term for y axis */
11
- term2: {
12
- id: string
13
- }
14
- aggregation: 'mean' | 'median' | 'count'
6
+ /**
7
+ * term wrapper for x axis: { term, q }.
8
+ * runChart2: q.mode='continuous' → 1 series.
9
+ * runChart2Period: q.mode='discrete' (with bins) → multiple series by period.
10
+ */
11
+ xtw: { term: { id: string }; q?: { mode?: 'continuous' | 'discrete' }; $id?: string }
12
+ /** term wrapper for y axis: { term, q } */
13
+ ytw: { term: { id: string }; q?: { mode?: string }; $id?: string }
14
+ aggregation: 'median'
15
15
  filter?: any
16
16
  __protected__?: any // auth token for accessing protected data
17
17
  }
@@ -20,6 +20,8 @@ export type RunChartResponse = {
20
20
  status: 'ok' | 'error'
21
21
  /** each series is one curve, with a median. a runchart may show 1 or multiple curves */
22
22
  series: {
23
+ /** period/series identifier */
24
+ seriesId?: string
23
25
  /** calculated Y median value for this curve */
24
26
  median: number
25
27
  points: Point[]
package/src/terms/geneVariant.ts CHANGED
@@ -11,13 +11,29 @@ export type GvBaseQ = MinBaseQ & {
11
11
  }
12
12
 
13
13
  type RawGvValuesQ = GvBaseQ & { type?: 'values' }
14
- type RawGvPredefinedGsQ = GvBaseQ & { type: 'predefined-groupset'; predefined_groupset_idx?: number }
15
- type RawGvCustomGsQ = GvBaseQ & { type: 'custom-groupset'; customset?: BaseGroupSet }
14
+ type RawGvPredefinedGsQ = GvBaseQ & {
15
+ type: 'predefined-groupset'
16
+ predefined_groupset_idx?: number
17
+ dtLst?: any[] // dts to query
18
+ }
19
+ type RawGvCustomGsQ = GvBaseQ & {
20
+ type: 'custom-groupset'
21
+ customset?: BaseGroupSet
22
+ dtLst?: any[] // dts to query
23
+ }
16
24
  export type RawGvQ = RawGvValuesQ | RawGvPredefinedGsQ | RawGvCustomGsQ
17
25
 
18
26
  export type GvValuesQ = GvBaseQ & { type: 'values' }
19
- export type GvPredefinedGsQ = GvBaseQ & { type: 'predefined-groupset'; predefined_groupset_idx: number }
20
- export type GvCustomGsQ = GvBaseQ & { type: 'custom-groupset'; customset: BaseGroupSet }
27
+ export type GvPredefinedGsQ = GvBaseQ & {
28
+ type: 'predefined-groupset'
29
+ predefined_groupset_idx: number
30
+ dtLst: any[] // dts to query
31
+ }
32
+ export type GvCustomGsQ = GvBaseQ & {
33
+ type: 'custom-groupset'
34
+ customset: BaseGroupSet
35
+ dtLst: any[] // dts to query
36
+ }
21
37
 
22
38
  export type GvQ = GvValuesQ | GvPredefinedGsQ | GvCustomGsQ
23
39