@sjcrh/proteinpaint-types 2.170.6 → 2.170.10

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Files changed (19) hide show
  1. package/dist/{chunk-E5YRM7EI.js → chunk-4SVR3XVB.js} +2 -2
  2. package/dist/{chunk-FZLBBARW.js → chunk-IXV4U26B.js} +2 -2
  3. package/dist/{chunk-GVVWY7NO.js → chunk-PFYCWMJO.js} +2 -2
  4. package/dist/{chunk-GDZUCVIB.js → chunk-RXJNXOZC.js} +2 -2
  5. package/dist/{chunk-DC4BBXO5.js → chunk-V43JPZ22.js} +2 -16
  6. package/dist/index.js +5 -5
  7. package/dist/termdb.boxplot.js +1 -1
  8. package/dist/termdb.categories.js +1 -1
  9. package/dist/termdb.descrstats.js +1 -1
  10. package/dist/termdb.sampleScatter.js +1 -1
  11. package/dist/termdb.violin.js +1 -1
  12. package/package.json +1 -1
  13. package/src/dataset.ts +4 -0
  14. package/src/index.ts +1 -0
  15. package/src/routes/termdb.boxplot.ts +0 -1
  16. package/src/routes/termdb.categories.ts +0 -5
  17. package/src/routes/termdb.descrstats.ts +0 -1
  18. package/src/routes/termdb.sampleScatter.ts +3 -1
  19. package/src/routes/termdb.violin.ts +0 -1
package/dist/{chunk-E5YRM7EI.js → chunk-4SVR3XVB.js} RENAMED
@@ -59,7 +59,7 @@ var validViolinRequest = (input) => {
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  const errors = [];
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  const __is = (input2) => {
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  const $join = import_typia.createValidate.join;
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- const $io0 = (input3) => "number" === typeof input3.axisHeight && (Array.isArray(input3.currentGeneNames) && input3.currentGeneNames.every((elem) => "string" === typeof elem)) && "string" === typeof input3.datasymbol && "number" === typeof input3.devicePixelRatio && true && true && "string" === typeof input3.dslabel && (void 0 === input3.filter || "object" === typeof input3.filter && null !== input3.filter && $io1(input3.filter)) && true && "string" === typeof input3.genome && "boolean" === typeof input3.isKDE && ("horizontal" === input3.orientation || "vertical" === input3.orientation) && "number" === typeof input3.radius && "number" === typeof input3.rightMargin && true && "number" === typeof input3.strokeWidth && "number" === typeof input3.svgw && "number" === typeof input3.ticks && true && "string" === typeof input3.unit && true;
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+ const $io0 = (input3) => "number" === typeof input3.axisHeight && (Array.isArray(input3.currentGeneNames) && input3.currentGeneNames.every((elem) => "string" === typeof elem)) && "string" === typeof input3.datasymbol && "number" === typeof input3.devicePixelRatio && true && true && "string" === typeof input3.dslabel && (void 0 === input3.filter || "object" === typeof input3.filter && null !== input3.filter && $io1(input3.filter)) && true && "string" === typeof input3.genome && "boolean" === typeof input3.isKDE && ("horizontal" === input3.orientation || "vertical" === input3.orientation) && "number" === typeof input3.radius && "number" === typeof input3.rightMargin && true && "number" === typeof input3.strokeWidth && "number" === typeof input3.svgw && "number" === typeof input3.ticks && true && "string" === typeof input3.unit;
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  const $io1 = (input3) => "tvslst" === input3.type && "boolean" === typeof input3["in"] && "string" === typeof input3.join && (void 0 === input3.tag || "string" === typeof input3.tag) && (Array.isArray(input3.lst) && input3.lst.every((elem) => "object" === typeof elem && null !== elem && $iu0(elem)));
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  const $io2 = (input3) => "tvs" === input3.type && ("object" === typeof input3.tvs && null !== input3.tvs && $iu4(input3.tvs));
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  const $io3 = (input3) => (void 0 === input3.join || "string" === typeof input3.join) && (void 0 === input3.isnot || "boolean" === typeof input3.isnot) && ("object" === typeof input3.term && null !== input3.term && $io4(input3.term)) && (void 0 === input3.groupset_label || "string" === typeof input3.groupset_label) && (Array.isArray(input3.values) && input3.values.every((elem) => "object" === typeof elem && null !== elem && false === Array.isArray(elem) && $io6(elem)));
@@ -282,7 +282,7 @@ var validViolinRequest = (input) => {
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  path: _path2 + ".unit",
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  expected: "string",
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  value: input3.unit
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- }), true].every((flag) => flag);
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+ })].every((flag) => flag);
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  const $vo1 = (input3, _path2, _exceptionable2 = true) => ["tvslst" === input3.type || $report(_exceptionable2, {
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  path: _path2 + ".type",
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  expected: '"tvslst"',
package/dist/{chunk-FZLBBARW.js → chunk-IXV4U26B.js} RENAMED
@@ -58,7 +58,7 @@ var validDescrStatsRequest = (input) => {
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  const errors = [];
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  const __is = (input2) => {
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  const $join = import_typia.createValidate.join;
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- const $io0 = (input3) => "string" === typeof input3.genome && "string" === typeof input3.dslabel && "string" === typeof input3.embedder && ("object" === typeof input3.tw && null !== input3.tw && $iu6(input3.tw)) && (void 0 === input3.logScale || "boolean" === typeof input3.logScale) && (void 0 === input3.filter || "object" === typeof input3.filter && null !== input3.filter && $io6(input3.filter)) && true && true;
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+ const $io0 = (input3) => "string" === typeof input3.genome && "string" === typeof input3.dslabel && "string" === typeof input3.embedder && ("object" === typeof input3.tw && null !== input3.tw && $iu6(input3.tw)) && (void 0 === input3.logScale || "boolean" === typeof input3.logScale) && (void 0 === input3.filter || "object" === typeof input3.filter && null !== input3.filter && $io6(input3.filter)) && true;
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  const $io1 = (input3) => (void 0 === input3.id || "string" === typeof input3.id) && (void 0 === input3.$id || "string" === typeof input3.$id) && (void 0 === input3.isAtomic || true === input3.isAtomic) && true && (void 0 === input3.settings || "object" === typeof input3.settings && null !== input3.settings && false === Array.isArray(input3.settings) && $io2(input3.settings)) && true && (void 0 === input3.minNumSamples || "number" === typeof input3.minNumSamples) && true && ("object" === typeof input3.term && null !== input3.term && $iu7(input3.term)) && ("object" === typeof input3.q && null !== input3.q && $io45(input3.q)) && "QualTWValues" === input3.type;
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  const $io2 = (input3) => Object.keys(input3).every((key) => {
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  const value = input3[key];
@@ -341,7 +341,7 @@ var validDescrStatsRequest = (input) => {
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  path: _path2 + ".filter",
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  expected: "(Filter | undefined)",
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  value: input3.filter
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- }), true, true].every((flag) => flag);
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+ }), true].every((flag) => flag);
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  const $vo1 = (input3, _path2, _exceptionable2 = true) => [void 0 === input3.id || "string" === typeof input3.id || $report(_exceptionable2, {
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  path: _path2 + ".id",
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  expected: "(string | undefined)",
package/dist/{chunk-GVVWY7NO.js → chunk-PFYCWMJO.js} RENAMED
@@ -73,7 +73,7 @@ var validBoxPlotRequest = (input) => {
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  const errors = [];
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  const __is = (input2) => {
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  const $join = import_typia.createValidate.join;
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- const $io0 = (input3) => "object" === typeof input3.tw && null !== input3.tw && $iu6(input3.tw) && "string" === typeof input3.genome && "string" === typeof input3.dslabel && "boolean" === typeof input3.isLogScale && "boolean" === typeof input3.orderByMedian && (void 0 === input3.removeOutliers || "boolean" === typeof input3.removeOutliers) && (void 0 === input3.showAssocTests || "boolean" === typeof input3.showAssocTests) && (void 0 === input3.overlayTw || "object" === typeof input3.overlayTw && null !== input3.overlayTw && $iu6(input3.overlayTw)) && (void 0 === input3.divideTw || "object" === typeof input3.divideTw && null !== input3.divideTw && $iu6(input3.divideTw)) && (void 0 === input3.filter || "object" === typeof input3.filter && null !== input3.filter && $io6(input3.filter)) && true && true;
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+ const $io0 = (input3) => "object" === typeof input3.tw && null !== input3.tw && $iu6(input3.tw) && "string" === typeof input3.genome && "string" === typeof input3.dslabel && "boolean" === typeof input3.isLogScale && "boolean" === typeof input3.orderByMedian && (void 0 === input3.removeOutliers || "boolean" === typeof input3.removeOutliers) && (void 0 === input3.showAssocTests || "boolean" === typeof input3.showAssocTests) && (void 0 === input3.overlayTw || "object" === typeof input3.overlayTw && null !== input3.overlayTw && $iu6(input3.overlayTw)) && (void 0 === input3.divideTw || "object" === typeof input3.divideTw && null !== input3.divideTw && $iu6(input3.divideTw)) && (void 0 === input3.filter || "object" === typeof input3.filter && null !== input3.filter && $io6(input3.filter)) && true;
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  const $io1 = (input3) => (void 0 === input3.id || "string" === typeof input3.id) && (void 0 === input3.$id || "string" === typeof input3.$id) && (void 0 === input3.isAtomic || true === input3.isAtomic) && true && (void 0 === input3.settings || "object" === typeof input3.settings && null !== input3.settings && false === Array.isArray(input3.settings) && $io2(input3.settings)) && true && (void 0 === input3.minNumSamples || "number" === typeof input3.minNumSamples) && true && ("object" === typeof input3.term && null !== input3.term && $iu7(input3.term)) && ("object" === typeof input3.q && null !== input3.q && $io45(input3.q)) && "QualTWValues" === input3.type;
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  const $io2 = (input3) => Object.keys(input3).every((key) => {
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  const value = input3[key];
@@ -380,7 +380,7 @@ var validBoxPlotRequest = (input) => {
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  path: _path2 + ".filter",
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  expected: "(Filter | undefined)",
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  value: input3.filter
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- }), true, true].every((flag) => flag);
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+ }), true].every((flag) => flag);
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  const $vo1 = (input3, _path2, _exceptionable2 = true) => [void 0 === input3.id || "string" === typeof input3.id || $report(_exceptionable2, {
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  path: _path2 + ".id",
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  expected: "(string | undefined)",
package/dist/{chunk-GDZUCVIB.js → chunk-RXJNXOZC.js} RENAMED
@@ -20,7 +20,7 @@ var termdbSampleScatterPayload = {
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  var validTermdbSampleScatterRequest = (input) => {
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  const errors = [];
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  const __is = (input2) => {
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- const $io0 = (input3) => "string" === typeof input3.genome && "string" === typeof input3.dslabel && true && true && true && true && (void 0 === input3.coordTWs || Array.isArray(input3.coordTWs)) && (void 0 === input3.plotName || "string" === typeof input3.plotName) && true && true && (void 0 === input3.chartType || "string" === typeof input3.chartType) && true;
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+ const $io0 = (input3) => "string" === typeof input3.genome && "string" === typeof input3.dslabel && true && true && true && true && (void 0 === input3.coordTWs || Array.isArray(input3.coordTWs)) && (void 0 === input3.plotName || "string" === typeof input3.plotName) && true && true && (void 0 === input3.chartType || "string" === typeof input3.chartType) && true && true && true;
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  return "object" === typeof input2 && null !== input2 && $io0(input2);
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  };
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  if (false === __is(input)) {
@@ -46,7 +46,7 @@ var validTermdbSampleScatterRequest = (input) => {
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  path: _path2 + ".chartType",
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  expected: "(string | undefined)",
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  value: input3.chartType
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- }), true].every((flag) => flag);
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+ }), true, true, true].every((flag) => flag);
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  return ("object" === typeof input2 && null !== input2 || $report(true, {
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  path: _path + "",
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  expected: "TermdbSampleScatterRequest",
package/dist/{chunk-DC4BBXO5.js → chunk-V43JPZ22.js} RENAMED
@@ -58,7 +58,7 @@ var validCategoriesRequest = (input) => {
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  const errors = [];
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  const __is = (input2) => {
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  const $join = import_typia.createValidate.join;
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- const $io0 = (input3) => "string" === typeof input3.genome && "string" === typeof input3.dslabel && "string" === typeof input3.embedder && ("object" === typeof input3.tw && null !== input3.tw && $iu6(input3.tw)) && (void 0 === input3.filter || "object" === typeof input3.filter && null !== input3.filter && $io6(input3.filter)) && true && (void 0 === input3.currentGeneNames || Array.isArray(input3.currentGeneNames) && input3.currentGeneNames.every((elem) => "string" === typeof elem)) && true && (void 0 === input3.__protected__ || "object" === typeof input3.__protected__ && null !== input3.__protected__ && false === Array.isArray(input3.__protected__) && $io80(input3.__protected__));
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+ const $io0 = (input3) => "string" === typeof input3.genome && "string" === typeof input3.dslabel && "string" === typeof input3.embedder && ("object" === typeof input3.tw && null !== input3.tw && $iu6(input3.tw)) && (void 0 === input3.filter || "object" === typeof input3.filter && null !== input3.filter && $io6(input3.filter)) && true && (void 0 === input3.currentGeneNames || Array.isArray(input3.currentGeneNames) && input3.currentGeneNames.every((elem) => "string" === typeof elem)) && true;
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  const $io1 = (input3) => (void 0 === input3.id || "string" === typeof input3.id) && (void 0 === input3.$id || "string" === typeof input3.$id) && (void 0 === input3.isAtomic || true === input3.isAtomic) && true && (void 0 === input3.settings || "object" === typeof input3.settings && null !== input3.settings && false === Array.isArray(input3.settings) && $io2(input3.settings)) && true && (void 0 === input3.minNumSamples || "number" === typeof input3.minNumSamples) && true && ("object" === typeof input3.term && null !== input3.term && $iu7(input3.term)) && ("object" === typeof input3.q && null !== input3.q && $io45(input3.q)) && "QualTWValues" === input3.type;
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  const $io2 = (input3) => Object.keys(input3).every((key) => {
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  const value = input3[key];
@@ -161,7 +161,6 @@ var validCategoriesRequest = (input) => {
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  const $io77 = (input3) => "string" === typeof input3.k && ("string" === typeof input3.v || "number" === typeof input3.v);
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  const $io78 = (input3) => (void 0 === input3.id || "string" === typeof input3.id) && (void 0 === input3.$id || "string" === typeof input3.$id) && (void 0 === input3.isAtomic || true === input3.isAtomic) && true && (void 0 === input3.settings || "object" === typeof input3.settings && null !== input3.settings && false === Array.isArray(input3.settings) && $io2(input3.settings)) && true && (void 0 === input3.minNumSamples || "number" === typeof input3.minNumSamples) && true && "TermCollectionTWValues" === input3.type && ("object" === typeof input3.term && null !== input3.term && $io42(input3.term)) && ("object" === typeof input3.q && null !== input3.q && $io79(input3.q));
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  const $io79 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io15(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && "continuous" === input3.mode && "values" === input3.type && (Array.isArray(input3.lst) && input3.lst.every((elem) => "string" === typeof elem)) && (void 0 === input3.numerators || Array.isArray(input3.numerators) && input3.numerators.every((elem) => "string" === typeof elem));
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- const $io80 = (input3) => (void 0 === input3.sessionId || "string" === typeof input3.sessionId) && true && true;
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  const $iu0 = (input3) => (() => {
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  if ("tvslst" === input3.type)
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  return $io6(input3);
@@ -350,15 +349,7 @@ var validCategoriesRequest = (input) => {
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  path: _path2 + ".currentGeneNames",
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  expected: "(Array<string> | undefined)",
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  value: input3.currentGeneNames
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- }), true, void 0 === input3.__protected__ || ("object" === typeof input3.__protected__ && null !== input3.__protected__ && false === Array.isArray(input3.__protected__) || $report(_exceptionable2, {
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- path: _path2 + ".__protected__",
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- expected: "(__type.o9 | undefined)",
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- value: input3.__protected__
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- })) && $vo80(input3.__protected__, _path2 + ".__protected__", _exceptionable2) || $report(_exceptionable2, {
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- path: _path2 + ".__protected__",
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- expected: "(__type.o9 | undefined)",
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- value: input3.__protected__
361
- })].every((flag) => flag);
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+ }), true].every((flag) => flag);
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  const $vo1 = (input3, _path2, _exceptionable2 = true) => [void 0 === input3.id || "string" === typeof input3.id || $report(_exceptionable2, {
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  path: _path2 + ".id",
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  expected: "(string | undefined)",
@@ -4278,11 +4269,6 @@ var validCategoriesRequest = (input) => {
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  expected: "(Array<string> | undefined)",
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  value: input3.numerators
4280
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  })].every((flag) => flag);
4281
- const $vo80 = (input3, _path2, _exceptionable2 = true) => [void 0 === input3.sessionId || "string" === typeof input3.sessionId || $report(_exceptionable2, {
4282
- path: _path2 + ".sessionId",
4283
- expected: "(string | undefined)",
4284
- value: input3.sessionId
4285
- }), true, true].every((flag) => flag);
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  const $vu0 = (input3, _path2, _exceptionable2 = true) => (() => {
4287
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  if ("tvslst" === input3.type)
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  return $vo6(input3, _path2, _exceptionable2);
package/dist/index.js CHANGED
@@ -17,7 +17,7 @@ import {
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  validViolinRequest,
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  validViolinResponse,
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  violinPayload
20
- } from "./chunk-E5YRM7EI.js";
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+ } from "./chunk-4SVR3XVB.js";
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  import {
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  tilePayload,
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  validTileRequest,
@@ -42,7 +42,7 @@ import {
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  termdbSampleScatterPayload,
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  validTermdbSampleScatterRequest,
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  validTermdbSampleScatterResponse
45
- } from "./chunk-GDZUCVIB.js";
45
+ } from "./chunk-RXJNXOZC.js";
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  import {
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  termdbSingleSampleMutationPayload,
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  validTermdbSingleSampleMutationRequest,
@@ -82,7 +82,7 @@ import {
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  descrStatsPayload,
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  validDescrStatsRequest,
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  validDescrStatsResponse
85
- } from "./chunk-FZLBBARW.js";
85
+ } from "./chunk-IXV4U26B.js";
86
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  import {
87
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  FilterTermValuesPayload,
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  validFilterTermValuesRequest,
@@ -132,12 +132,12 @@ import {
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  boxplotPayload,
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  validBoxPlotRequest,
134
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  validBoxPlotResponse
135
- } from "./chunk-GVVWY7NO.js";
135
+ } from "./chunk-PFYCWMJO.js";
136
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  import {
137
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  termdbCategoriesPayload,
138
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  validCategoriesRequest,
139
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  validCategoriesResponse
140
- } from "./chunk-DC4BBXO5.js";
140
+ } from "./chunk-V43JPZ22.js";
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  import {
142
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  ChatPayload,
143
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  validChatRequest,
package/dist/termdb.boxplot.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  boxplotPayload,
3
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  validBoxPlotRequest,
4
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  validBoxPlotResponse
5
- } from "./chunk-GVVWY7NO.js";
5
+ } from "./chunk-PFYCWMJO.js";
6
6
  import "./chunk-YNHC5SXO.js";
7
7
  export {
8
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  boxplotPayload,
package/dist/termdb.categories.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  termdbCategoriesPayload,
3
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  validCategoriesRequest,
4
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  validCategoriesResponse
5
- } from "./chunk-DC4BBXO5.js";
5
+ } from "./chunk-V43JPZ22.js";
6
6
  import "./chunk-YNHC5SXO.js";
7
7
  export {
8
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  termdbCategoriesPayload,
package/dist/termdb.descrstats.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  descrStatsPayload,
3
3
  validDescrStatsRequest,
4
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  validDescrStatsResponse
5
- } from "./chunk-FZLBBARW.js";
5
+ } from "./chunk-IXV4U26B.js";
6
6
  import "./chunk-YNHC5SXO.js";
7
7
  export {
8
8
  descrStatsPayload,
package/dist/termdb.sampleScatter.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  termdbSampleScatterPayload,
3
3
  validTermdbSampleScatterRequest,
4
4
  validTermdbSampleScatterResponse
5
- } from "./chunk-GDZUCVIB.js";
5
+ } from "./chunk-RXJNXOZC.js";
6
6
  import "./chunk-YNHC5SXO.js";
7
7
  export {
8
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  termdbSampleScatterPayload,
package/dist/termdb.violin.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  validViolinRequest,
3
3
  validViolinResponse,
4
4
  violinPayload
5
- } from "./chunk-E5YRM7EI.js";
5
+ } from "./chunk-4SVR3XVB.js";
6
6
  import "./chunk-YNHC5SXO.js";
7
7
  export {
8
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  validViolinRequest,
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@sjcrh/proteinpaint-types",
3
- "version": "2.170.6",
3
+ "version": "2.170.10",
4
4
  "type": "module",
5
5
  "description": "Shared type definitions between ProteinPaint server and client code",
6
6
  "main": "src/index.ts",
package/src/dataset.ts CHANGED
@@ -1588,6 +1588,10 @@ keep this setting here for reason of:
1588
1588
  }
1589
1589
  /** maximum number of genes to query in geneVariant gene set */
1590
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  maxGeneVariantGeneSetSize?: number
1591
+ /** (server-side) maximum number of awaited by-term queries for sample data */
1592
+ maxConcurrentQueries?: number
1593
+ /** (client-side) maximum number of terms that should be submitted in one fetch request in TermdbVocab.getAnnotatedSampleData() */
1594
+ maxAnnoTermsPerClientRequest?: number
1591
1595
  //terms are shown in the dictionary based on term and user role.
1592
1596
  isTermVisible?: (clientAuthResult: any, ids: string) => boolean
1593
1597
  hiddenIds?: string[]
package/src/index.ts CHANGED
@@ -34,6 +34,7 @@ export * from './routes/img.ts'
34
34
  export * from './routes/isoformlst.ts'
35
35
  export * from './routes/ntseq.ts'
36
36
  export * from './routes/pdomain.ts'
37
+ export * from './routes/routeApi.ts'
37
38
  export * from './routes/samplewsimages.ts'
38
39
  export * from './routes/saveWSIAnnotation.ts'
39
40
  export * from './routes/snp.ts'
package/src/routes/termdb.boxplot.ts CHANGED
@@ -23,7 +23,6 @@ export type BoxPlotRequest = {
23
23
  divideTw?: TermWrapper
24
24
  filter?: Filter
25
25
  filter0?: any
26
- __protected__: any
27
26
  }
28
27
 
29
28
  export type BoxPlotResponse = {
package/src/routes/termdb.categories.ts CHANGED
@@ -14,11 +14,6 @@ export type CategoriesRequest = {
14
14
  currentGeneNames?: string[]
15
15
  /** optional property added by mds3 tk, to limit to cases mutated in this region */
16
16
  rglst?: any
17
- __protected__?: {
18
- sessionId?: string
19
- clientAuthResults?: any
20
- ignoredTermIds?: any
21
- }
22
17
  }
23
18
 
24
19
  interface Entries {
package/src/routes/termdb.descrstats.ts CHANGED
@@ -16,7 +16,6 @@ export type DescrStatsRequest = {
16
16
  filter?: Filter
17
17
  /** optional gdc filter */
18
18
  filter0?: any
19
- __protected__?: any //reuse definition from termdb.matrix.ts!!!
20
19
  }
21
20
 
22
21
  export type DescrStats = {
package/src/routes/termdb.sampleScatter.ts CHANGED
@@ -14,7 +14,9 @@ export type TermdbSampleScatterRequest = {
14
14
  filter?: any
15
15
  filter0?: any
16
16
  chartType?: string
17
- __protected__?: any // auth token for accessing protected data
17
+ singleCellPlot?: any
18
+ colorColumn?: any
19
+ excludeOutliers?: any
18
20
  }
19
21
 
20
22
  export type ScatterSample = {
package/src/routes/termdb.violin.ts CHANGED
@@ -49,7 +49,6 @@ export type ViolinRequest = {
49
49
  tw: any
50
50
  /** A string representing a unit of measurement (e.g., 'log' for log scale) */
51
51
  unit: string
52
- __protected__: any
53
52
  }
54
53
 
55
54
  /** ?? TODO: Needs description */