@sjcrh/proteinpaint-types 2.166.0 → 2.169.0

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Files changed (9) hide show
  1. package/dist/{chunk-TR2MSSP3.js → chunk-GIPUG4HD.js} +45 -12
  2. package/dist/{chunk-JT4DSNJ3.js → chunk-PZHVYGSD.js} +91 -51
  3. package/dist/index.js +2 -2
  4. package/dist/termdb.boxplot.js +1 -1
  5. package/dist/termdb.chat.js +1 -1
  6. package/package.json +1 -1
  7. package/src/dataset.ts +7 -0
  8. package/src/routes/termdb.boxplot.ts +10 -9
  9. package/src/routes/termdb.chat.ts +11 -33
package/dist/{chunk-TR2MSSP3.js → chunk-GIPUG4HD.js} RENAMED
@@ -22,7 +22,7 @@ var validChatRequest = (input) => {
22
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  const errors = [];
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  const __is = (input2) => {
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  const $join = import_typia.createValidate.join;
25
- const $io0 = (input3) => "string" === typeof input3.genome && "string" === typeof input3.dslabel && (void 0 === input3.filter || "object" === typeof input3.filter && null !== input3.filter && $io1(input3.filter)) && true && "string" === typeof input3.prompt && true;
25
+ const $io0 = (input3) => "string" === typeof input3.genome && "string" === typeof input3.dslabel && (void 0 === input3.filter || "object" === typeof input3.filter && null !== input3.filter && $io1(input3.filter)) && "string" === typeof input3.prompt && true;
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  const $io1 = (input3) => "tvslst" === input3.type && "boolean" === typeof input3["in"] && "string" === typeof input3.join && (void 0 === input3.tag || "string" === typeof input3.tag) && (Array.isArray(input3.lst) && input3.lst.every((elem) => "object" === typeof elem && null !== elem && $iu0(elem)));
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  const $io2 = (input3) => "tvs" === input3.type && ("object" === typeof input3.tvs && null !== input3.tvs && $iu4(input3.tvs));
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  const $io3 = (input3) => (void 0 === input3.join || "string" === typeof input3.join) && (void 0 === input3.isnot || "boolean" === typeof input3.isnot) && ("object" === typeof input3.term && null !== input3.term && $io4(input3.term)) && (void 0 === input3.groupset_label || "string" === typeof input3.groupset_label) && (Array.isArray(input3.values) && input3.values.every((elem) => "object" === typeof elem && null !== elem && false === Array.isArray(elem) && $io6(elem)));
@@ -185,7 +185,7 @@ var validChatRequest = (input) => {
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  path: _path2 + ".filter",
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  expected: "(Filter | undefined)",
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  value: input3.filter
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- }), true, "string" === typeof input3.prompt || $report(_exceptionable2, {
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+ }), "string" === typeof input3.prompt || $report(_exceptionable2, {
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  path: _path2 + ".prompt",
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  expected: "string",
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  value: input3.prompt
@@ -2207,28 +2207,61 @@ var validChatRequest = (input) => {
2207
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  var validChatResponse = (input) => {
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  const errors = [];
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  const __is = (input2) => {
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- const $io0 = (input3) => ("html" === input3.type || "plot" === input3.type || "json" === input3.type) && (void 0 === input3.html || "string" === typeof input3.html) && true;
2211
- return "object" === typeof input2 && null !== input2 && $io0(input2);
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+ const $io0 = (input3) => "html" === input3.type && "string" === typeof input3.html;
2211
+ const $io1 = (input3) => "plot" === input3.type && ("object" === typeof input3.plot && null !== input3.plot && true);
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+ const $iu0 = (input3) => (() => {
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+ if ("html" === input3.type)
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+ return $io0(input3);
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+ if ("plot" === input3.type)
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+ return $io1(input3);
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+ return false;
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+ })();
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+ return "object" === typeof input2 && null !== input2 && $iu0(input2);
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  };
2213
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  if (false === __is(input)) {
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  const $report = import_typia.createValidate.report(errors);
2215
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  ((input2, _path, _exceptionable = true) => {
2216
- const $vo0 = (input3, _path2, _exceptionable2 = true) => ["html" === input3.type || "plot" === input3.type || "json" === input3.type || $report(_exceptionable2, {
2224
+ const $vo0 = (input3, _path2, _exceptionable2 = true) => ["html" === input3.type || $report(_exceptionable2, {
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  path: _path2 + ".type",
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- expected: '("html" | "json" | "plot")',
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+ expected: '"html"',
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  value: input3.type
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- }), void 0 === input3.html || "string" === typeof input3.html || $report(_exceptionable2, {
2228
+ }), "string" === typeof input3.html || $report(_exceptionable2, {
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  path: _path2 + ".html",
2222
- expected: "(string | undefined)",
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+ expected: "string",
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  value: input3.html
2224
- }), true].every((flag) => flag);
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+ })].every((flag) => flag);
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+ const $vo1 = (input3, _path2, _exceptionable2 = true) => ["plot" === input3.type || $report(_exceptionable2, {
2234
+ path: _path2 + ".type",
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+ expected: '"plot"',
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+ value: input3.type
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+ }), ("object" === typeof input3.plot && null !== input3.plot && false === Array.isArray(input3.plot) || $report(_exceptionable2, {
2238
+ path: _path2 + ".plot",
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+ expected: "object",
2240
+ value: input3.plot
2241
+ })) && $vo2(input3.plot, _path2 + ".plot", _exceptionable2) || $report(_exceptionable2, {
2242
+ path: _path2 + ".plot",
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+ expected: "object",
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+ value: input3.plot
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+ })].every((flag) => flag);
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+ const $vo2 = (input3, _path2, _exceptionable2 = true) => true;
2247
+ const $vu0 = (input3, _path2, _exceptionable2 = true) => (() => {
2248
+ if ("html" === input3.type)
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+ return $vo0(input3, _path2, _exceptionable2);
2250
+ if ("plot" === input3.type)
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+ return $vo1(input3, _path2, _exceptionable2);
2252
+ return $report(_exceptionable2, {
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+ path: _path2,
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+ expected: "(HtmlResponse | PlotResponse)",
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+ value: input3
2256
+ });
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+ })();
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  return ("object" === typeof input2 && null !== input2 || $report(true, {
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  path: _path + "",
2227
- expected: "ChatResponse",
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+ expected: "(HtmlResponse | PlotResponse)",
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  value: input2
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- })) && $vo0(input2, _path + "", true) || $report(true, {
2262
+ })) && $vu0(input2, _path + "", true) || $report(true, {
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  path: _path + "",
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- expected: "ChatResponse",
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+ expected: "(HtmlResponse | PlotResponse)",
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  value: input2
2233
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  });
2234
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  })(input, "$input", true);
package/dist/{chunk-JT4DSNJ3.js → chunk-PZHVYGSD.js} RENAMED
@@ -73,7 +73,7 @@ var validBoxPlotRequest = (input) => {
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  const errors = [];
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  const __is = (input2) => {
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  const $join = import_typia.createValidate.join;
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- const $io0 = (input3) => "object" === typeof input3.tw && null !== input3.tw && $iu6(input3.tw) && "string" === typeof input3.genome && "string" === typeof input3.dslabel && "boolean" === typeof input3.isLogScale && "boolean" === typeof input3.orderByMedian && (void 0 === input3.overlayTw || "object" === typeof input3.overlayTw && null !== input3.overlayTw && $iu6(input3.overlayTw)) && (void 0 === input3.divideTw || "object" === typeof input3.divideTw && null !== input3.divideTw && $iu6(input3.divideTw)) && (void 0 === input3.filter || "object" === typeof input3.filter && null !== input3.filter && $io6(input3.filter)) && true && true && (void 0 === input3.removeOutliers || "boolean" === typeof input3.removeOutliers);
76
+ const $io0 = (input3) => "object" === typeof input3.tw && null !== input3.tw && $iu6(input3.tw) && "string" === typeof input3.genome && "string" === typeof input3.dslabel && "boolean" === typeof input3.isLogScale && "boolean" === typeof input3.orderByMedian && (void 0 === input3.removeOutliers || "boolean" === typeof input3.removeOutliers) && (void 0 === input3.showAssocTests || "boolean" === typeof input3.showAssocTests) && (void 0 === input3.overlayTw || "object" === typeof input3.overlayTw && null !== input3.overlayTw && $iu6(input3.overlayTw)) && (void 0 === input3.divideTw || "object" === typeof input3.divideTw && null !== input3.divideTw && $iu6(input3.divideTw)) && (void 0 === input3.filter || "object" === typeof input3.filter && null !== input3.filter && $io6(input3.filter)) && true && true;
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  const $io1 = (input3) => (void 0 === input3.id || "string" === typeof input3.id) && (void 0 === input3.$id || "string" === typeof input3.$id) && (void 0 === input3.isAtomic || true === input3.isAtomic) && true && (void 0 === input3.settings || "object" === typeof input3.settings && null !== input3.settings && false === Array.isArray(input3.settings) && $io2(input3.settings)) && true && (void 0 === input3.minNumSamples || "number" === typeof input3.minNumSamples) && true && ("object" === typeof input3.term && null !== input3.term && $iu7(input3.term)) && ("object" === typeof input3.q && null !== input3.q && $io43(input3.q)) && "QualTWValues" === input3.type;
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  const $io2 = (input3) => Object.keys(input3).every((key) => {
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  const value = input3[key];
@@ -340,6 +340,14 @@ var validBoxPlotRequest = (input) => {
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  path: _path2 + ".orderByMedian",
341
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  expected: "boolean",
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  value: input3.orderByMedian
343
+ }), void 0 === input3.removeOutliers || "boolean" === typeof input3.removeOutliers || $report(_exceptionable2, {
344
+ path: _path2 + ".removeOutliers",
345
+ expected: "(boolean | undefined)",
346
+ value: input3.removeOutliers
347
+ }), void 0 === input3.showAssocTests || "boolean" === typeof input3.showAssocTests || $report(_exceptionable2, {
348
+ path: _path2 + ".showAssocTests",
349
+ expected: "(boolean | undefined)",
350
+ value: input3.showAssocTests
343
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  }), void 0 === input3.overlayTw || ("object" === typeof input3.overlayTw && null !== input3.overlayTw || $report(_exceptionable2, {
344
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  path: _path2 + ".overlayTw",
345
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  expected: "(ConditionTW | GvCustomGsTW | GvPredefinedGsTW | GvValuesTW | NumTWBinary | NumTWCont | NumTWCustomBin | NumTWRegularBin | NumTWSpline | QualTWCustomGS | QualTWPredefinedGS | QualTWValues | SnpsTW | undefined)",
@@ -364,11 +372,7 @@ var validBoxPlotRequest = (input) => {
364
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  path: _path2 + ".filter",
365
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  expected: "(Filter | undefined)",
366
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  value: input3.filter
367
- }), true, true, void 0 === input3.removeOutliers || "boolean" === typeof input3.removeOutliers || $report(_exceptionable2, {
368
- path: _path2 + ".removeOutliers",
369
- expected: "(boolean | undefined)",
370
- value: input3.removeOutliers
371
- })].every((flag) => flag);
375
+ }), true, true].every((flag) => flag);
372
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  const $vo1 = (input3, _path2, _exceptionable2 = true) => [void 0 === input3.id || "string" === typeof input3.id || $report(_exceptionable2, {
373
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  path: _path2 + ".id",
374
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  expected: "(string | undefined)",
@@ -4242,7 +4246,7 @@ var validBoxPlotResponse = (input) => {
4242
4246
  const errors = [];
4243
4247
  const __is = (input2) => {
4244
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  const $join = import_typia.createValidate.join;
4245
- const $io0 = (input3) => (void 0 === input3.absMin || "number" === typeof input3.absMin) && (void 0 === input3.absMax || "number" === typeof input3.absMax) && ("object" === typeof input3.charts && null !== input3.charts && false === Array.isArray(input3.charts) && $io1(input3.charts)) && (null === input3.uncomputableValues || Array.isArray(input3.uncomputableValues) && input3.uncomputableValues.every((elem) => "object" === typeof elem && null !== elem && $io9(elem))) && true && ("object" === typeof input3.descrStats && null !== input3.descrStats && false === Array.isArray(input3.descrStats) && $io6(input3.descrStats));
4249
+ const $io0 = (input3) => (void 0 === input3.absMin || "number" === typeof input3.absMin) && (void 0 === input3.absMax || "number" === typeof input3.absMax) && ("object" === typeof input3.charts && null !== input3.charts && false === Array.isArray(input3.charts) && $io1(input3.charts)) && ("object" === typeof input3.descrStats && null !== input3.descrStats && false === Array.isArray(input3.descrStats) && $io6(input3.descrStats)) && (null === input3.uncomputableValues || Array.isArray(input3.uncomputableValues) && input3.uncomputableValues.every((elem) => "object" === typeof elem && null !== elem && $io11(elem))) && true;
4246
4250
  const $io1 = (input3) => Object.keys(input3).every((key) => {
4247
4251
  const value = input3[key];
4248
4252
  if (void 0 === value)
@@ -4251,7 +4255,7 @@ var validBoxPlotResponse = (input) => {
4251
4255
  return "object" === typeof value && null !== value && $io2(value);
4252
4256
  return true;
4253
4257
  });
4254
- const $io2 = (input3) => "string" === typeof input3.chartId && (Array.isArray(input3.plots) && input3.plots.every((elem) => "object" === typeof elem && null !== elem && $io3(elem))) && true && (void 0 === input3.absMin || "number" === typeof input3.absMin) && (void 0 === input3.absMax || "number" === typeof input3.absMax) && (null === input3.uncomputableValues || void 0 === input3.uncomputableValues || Array.isArray(input3.uncomputableValues) && input3.uncomputableValues.every((elem) => "object" === typeof elem && null !== elem && $io8(elem)));
4258
+ const $io2 = (input3) => "string" === typeof input3.chartId && (Array.isArray(input3.plots) && input3.plots.every((elem) => "object" === typeof elem && null !== elem && $io3(elem))) && "number" === typeof input3.sampleCount && (void 0 === input3.wilcoxon || Array.isArray(input3.wilcoxon) && input3.wilcoxon.every((elem) => Array.isArray(elem) && (elem.length === 3 && ("object" === typeof elem[0] && null !== elem[0] && $io8(elem[0])) && ("object" === typeof elem[1] && null !== elem[1] && $io9(elem[1])) && ("object" === typeof elem[2] && null !== elem[2] && $io10(elem[2])))));
4255
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  const $io3 = (input3) => "object" === typeof input3.boxplot && null !== input3.boxplot && $io4(input3.boxplot) && (void 0 === input3.color || "string" === typeof input3.color) && ("object" === typeof input3.descrStats && null !== input3.descrStats && false === Array.isArray(input3.descrStats) && $io6(input3.descrStats)) && (void 0 === input3.isHidden || "boolean" === typeof input3.isHidden) && "string" === typeof input3.key && true && (void 0 === input3.seriesId || "string" === typeof input3.seriesId);
4256
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  const $io4 = (input3) => (void 0 === input3.w1 || "number" === typeof input3.w1) && (void 0 === input3.w2 || "number" === typeof input3.w2) && "number" === typeof input3.p05 && "number" === typeof input3.p25 && "number" === typeof input3.p50 && "number" === typeof input3.p75 && "number" === typeof input3.p95 && "number" === typeof input3.iqr && (Array.isArray(input3.out) && input3.out.every((elem) => "object" === typeof elem && null !== elem && $io5(elem))) && "string" === typeof input3.label;
4257
4261
  const $io5 = (input3) => "number" === typeof input3.value;
@@ -4263,8 +4267,10 @@ var validBoxPlotResponse = (input) => {
4263
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  return "object" === typeof value && null !== value && ("string" === typeof value.key && "string" === typeof value.label && "number" === typeof value.value);
4264
4268
  return true;
4265
4269
  });
4266
- const $io8 = (input3) => "string" === typeof input3.label && "number" === typeof input3.value;
4267
- const $io9 = (input3) => "string" === typeof input3.label && "number" === typeof input3.value;
4270
+ const $io8 = (input3) => "string" === typeof input3.value;
4271
+ const $io9 = (input3) => "string" === typeof input3.value;
4272
+ const $io10 = (input3) => "string" === typeof input3.html;
4273
+ const $io11 = (input3) => "string" === typeof input3.label && "number" === typeof input3.value;
4268
4274
  return "object" === typeof input2 && null !== input2 && $io0(input2);
4269
4275
  };
4270
4276
  if (false === __is(input)) {
@@ -4287,31 +4293,31 @@ var validBoxPlotResponse = (input) => {
4287
4293
  path: _path2 + ".charts",
4288
4294
  expected: "__type",
4289
4295
  value: input3.charts
4296
+ }), ("object" === typeof input3.descrStats && null !== input3.descrStats && false === Array.isArray(input3.descrStats) || $report(_exceptionable2, {
4297
+ path: _path2 + ".descrStats",
4298
+ expected: "DescrStats",
4299
+ value: input3.descrStats
4300
+ })) && $vo6(input3.descrStats, _path2 + ".descrStats", _exceptionable2) || $report(_exceptionable2, {
4301
+ path: _path2 + ".descrStats",
4302
+ expected: "DescrStats",
4303
+ value: input3.descrStats
4290
4304
  }), null === input3.uncomputableValues || (Array.isArray(input3.uncomputableValues) || $report(_exceptionable2, {
4291
4305
  path: _path2 + ".uncomputableValues",
4292
- expected: "(Array<__type>.o2 | null)",
4306
+ expected: "(Array<__type>.o1 | null)",
4293
4307
  value: input3.uncomputableValues
4294
4308
  })) && input3.uncomputableValues.map((elem, _index1) => ("object" === typeof elem && null !== elem || $report(_exceptionable2, {
4295
4309
  path: _path2 + ".uncomputableValues[" + _index1 + "]",
4296
- expected: "__type.o4",
4310
+ expected: "__type.o6",
4297
4311
  value: elem
4298
- })) && $vo9(elem, _path2 + ".uncomputableValues[" + _index1 + "]", _exceptionable2) || $report(_exceptionable2, {
4312
+ })) && $vo11(elem, _path2 + ".uncomputableValues[" + _index1 + "]", _exceptionable2) || $report(_exceptionable2, {
4299
4313
  path: _path2 + ".uncomputableValues[" + _index1 + "]",
4300
- expected: "__type.o4",
4314
+ expected: "__type.o6",
4301
4315
  value: elem
4302
4316
  })).every((flag) => flag) || $report(_exceptionable2, {
4303
4317
  path: _path2 + ".uncomputableValues",
4304
- expected: "(Array<__type>.o2 | null)",
4318
+ expected: "(Array<__type>.o1 | null)",
4305
4319
  value: input3.uncomputableValues
4306
- }), true, ("object" === typeof input3.descrStats && null !== input3.descrStats && false === Array.isArray(input3.descrStats) || $report(_exceptionable2, {
4307
- path: _path2 + ".descrStats",
4308
- expected: "DescrStats",
4309
- value: input3.descrStats
4310
- })) && $vo6(input3.descrStats, _path2 + ".descrStats", _exceptionable2) || $report(_exceptionable2, {
4311
- path: _path2 + ".descrStats",
4312
- expected: "DescrStats",
4313
- value: input3.descrStats
4314
- })].every((flag) => flag);
4320
+ }), true].every((flag) => flag);
4315
4321
  const $vo1 = (input3, _path2, _exceptionable2 = true) => [false === _exceptionable2 || Object.keys(input3).map((key) => {
4316
4322
  const value = input3[key];
4317
4323
  if (void 0 === value)
@@ -4348,30 +4354,58 @@ var validBoxPlotResponse = (input) => {
4348
4354
  path: _path2 + ".plots",
4349
4355
  expected: "Array<BoxPlotEntry>",
4350
4356
  value: input3.plots
4351
- }), true, void 0 === input3.absMin || "number" === typeof input3.absMin || $report(_exceptionable2, {
4352
- path: _path2 + ".absMin",
4353
- expected: "(number | undefined)",
4354
- value: input3.absMin
4355
- }), void 0 === input3.absMax || "number" === typeof input3.absMax || $report(_exceptionable2, {
4356
- path: _path2 + ".absMax",
4357
- expected: "(number | undefined)",
4358
- value: input3.absMax
4359
- }), null === input3.uncomputableValues || void 0 === input3.uncomputableValues || (Array.isArray(input3.uncomputableValues) || $report(_exceptionable2, {
4360
- path: _path2 + ".uncomputableValues",
4361
- expected: "(Array<__type>.o1 | null | undefined)",
4362
- value: input3.uncomputableValues
4363
- })) && input3.uncomputableValues.map((elem, _index3) => ("object" === typeof elem && null !== elem || $report(_exceptionable2, {
4364
- path: _path2 + ".uncomputableValues[" + _index3 + "]",
4365
- expected: "__type.o3",
4357
+ }), "number" === typeof input3.sampleCount || $report(_exceptionable2, {
4358
+ path: _path2 + ".sampleCount",
4359
+ expected: "number",
4360
+ value: input3.sampleCount
4361
+ }), void 0 === input3.wilcoxon || (Array.isArray(input3.wilcoxon) || $report(_exceptionable2, {
4362
+ path: _path2 + ".wilcoxon",
4363
+ expected: "(Array<[{ value: string; }, { value: string; }, { html: string; }]> | undefined)",
4364
+ value: input3.wilcoxon
4365
+ })) && input3.wilcoxon.map((elem, _index3) => (Array.isArray(elem) || $report(_exceptionable2, {
4366
+ path: _path2 + ".wilcoxon[" + _index3 + "]",
4367
+ expected: "[{ value: string; }, { value: string; }, { html: string; }]",
4368
+ value: elem
4369
+ })) && ((elem.length === 3 || $report(_exceptionable2, {
4370
+ path: _path2 + ".wilcoxon[" + _index3 + "]",
4371
+ expected: "[__type.o3, __type.o4, __type.o5]",
4366
4372
  value: elem
4367
- })) && $vo8(elem, _path2 + ".uncomputableValues[" + _index3 + "]", _exceptionable2) || $report(_exceptionable2, {
4368
- path: _path2 + ".uncomputableValues[" + _index3 + "]",
4369
- expected: "__type.o3",
4373
+ })) && [
4374
+ ("object" === typeof elem[0] && null !== elem[0] || $report(_exceptionable2, {
4375
+ path: _path2 + ".wilcoxon[" + _index3 + "][0]",
4376
+ expected: "__type.o3",
4377
+ value: elem[0]
4378
+ })) && $vo8(elem[0], _path2 + ".wilcoxon[" + _index3 + "][0]", _exceptionable2) || $report(_exceptionable2, {
4379
+ path: _path2 + ".wilcoxon[" + _index3 + "][0]",
4380
+ expected: "__type.o3",
4381
+ value: elem[0]
4382
+ }),
4383
+ ("object" === typeof elem[1] && null !== elem[1] || $report(_exceptionable2, {
4384
+ path: _path2 + ".wilcoxon[" + _index3 + "][1]",
4385
+ expected: "__type.o4",
4386
+ value: elem[1]
4387
+ })) && $vo9(elem[1], _path2 + ".wilcoxon[" + _index3 + "][1]", _exceptionable2) || $report(_exceptionable2, {
4388
+ path: _path2 + ".wilcoxon[" + _index3 + "][1]",
4389
+ expected: "__type.o4",
4390
+ value: elem[1]
4391
+ }),
4392
+ ("object" === typeof elem[2] && null !== elem[2] || $report(_exceptionable2, {
4393
+ path: _path2 + ".wilcoxon[" + _index3 + "][2]",
4394
+ expected: "__type.o5",
4395
+ value: elem[2]
4396
+ })) && $vo10(elem[2], _path2 + ".wilcoxon[" + _index3 + "][2]", _exceptionable2) || $report(_exceptionable2, {
4397
+ path: _path2 + ".wilcoxon[" + _index3 + "][2]",
4398
+ expected: "__type.o5",
4399
+ value: elem[2]
4400
+ })
4401
+ ].every((flag) => flag)) || $report(_exceptionable2, {
4402
+ path: _path2 + ".wilcoxon[" + _index3 + "]",
4403
+ expected: "[{ value: string; }, { value: string; }, { html: string; }]",
4370
4404
  value: elem
4371
4405
  })).every((flag) => flag) || $report(_exceptionable2, {
4372
- path: _path2 + ".uncomputableValues",
4373
- expected: "(Array<__type>.o1 | null | undefined)",
4374
- value: input3.uncomputableValues
4406
+ path: _path2 + ".wilcoxon",
4407
+ expected: "(Array<[{ value: string; }, { value: string; }, { html: string; }]> | undefined)",
4408
+ value: input3.wilcoxon
4375
4409
  })].every((flag) => flag);
4376
4410
  const $vo3 = (input3, _path2, _exceptionable2 = true) => [("object" === typeof input3.boxplot && null !== input3.boxplot || $report(_exceptionable2, {
4377
4411
  path: _path2 + ".boxplot",
@@ -4493,16 +4527,22 @@ var validBoxPlotResponse = (input) => {
4493
4527
  expected: "number",
4494
4528
  value: input3.value
4495
4529
  })].every((flag) => flag);
4496
- const $vo8 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.label || $report(_exceptionable2, {
4497
- path: _path2 + ".label",
4530
+ const $vo8 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.value || $report(_exceptionable2, {
4531
+ path: _path2 + ".value",
4498
4532
  expected: "string",
4499
- value: input3.label
4500
- }), "number" === typeof input3.value || $report(_exceptionable2, {
4533
+ value: input3.value
4534
+ })].every((flag) => flag);
4535
+ const $vo9 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.value || $report(_exceptionable2, {
4501
4536
  path: _path2 + ".value",
4502
- expected: "number",
4537
+ expected: "string",
4503
4538
  value: input3.value
4504
4539
  })].every((flag) => flag);
4505
- const $vo9 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.label || $report(_exceptionable2, {
4540
+ const $vo10 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.html || $report(_exceptionable2, {
4541
+ path: _path2 + ".html",
4542
+ expected: "string",
4543
+ value: input3.html
4544
+ })].every((flag) => flag);
4545
+ const $vo11 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.label || $report(_exceptionable2, {
4506
4546
  path: _path2 + ".label",
4507
4547
  expected: "string",
4508
4548
  value: input3.label
package/dist/index.js CHANGED
@@ -132,7 +132,7 @@ import {
132
132
  boxplotPayload,
133
133
  validBoxPlotRequest,
134
134
  validBoxPlotResponse
135
- } from "./chunk-JT4DSNJ3.js";
135
+ } from "./chunk-PZHVYGSD.js";
136
136
  import {
137
137
  termdbCategoriesPayload,
138
138
  validCategoriesRequest,
@@ -142,7 +142,7 @@ import {
142
142
  ChatPayload,
143
143
  validChatRequest,
144
144
  validChatResponse
145
- } from "./chunk-TR2MSSP3.js";
145
+ } from "./chunk-GIPUG4HD.js";
146
146
  import {
147
147
  termdbClusterPayload,
148
148
  validTermdbClusterRequest,
package/dist/termdb.boxplot.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  boxplotPayload,
3
3
  validBoxPlotRequest,
4
4
  validBoxPlotResponse
5
- } from "./chunk-JT4DSNJ3.js";
5
+ } from "./chunk-PZHVYGSD.js";
6
6
  import "./chunk-YNHC5SXO.js";
7
7
  export {
8
8
  boxplotPayload,
package/dist/termdb.chat.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  ChatPayload,
3
3
  validChatRequest,
4
4
  validChatResponse
5
- } from "./chunk-TR2MSSP3.js";
5
+ } from "./chunk-GIPUG4HD.js";
6
6
  import "./chunk-YNHC5SXO.js";
7
7
  export {
8
8
  ChatPayload,
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@sjcrh/proteinpaint-types",
3
- "version": "2.166.0",
3
+ "version": "2.169.0",
4
4
  "type": "module",
5
5
  "description": "Shared type definitions between ProteinPaint server and client code",
6
6
  "main": "src/index.ts",
package/src/dataset.ts CHANGED
@@ -1172,6 +1172,12 @@ type CorrelationVolcano = {
1172
1172
  }
1173
1173
  }
1174
1174
 
1175
+ /** Configurations for box plots */
1176
+ type BoxPlots = {
1177
+ /** If true, allows user to 'remove outliers' from burger menu */
1178
+ removeOutliers: boolean
1179
+ }
1180
+
1175
1181
  type UiLabels = {
1176
1182
  [propName: string]: string | { label: string; [otherAttr: string]: string }
1177
1183
  }
@@ -1739,6 +1745,7 @@ export type Cohort = {
1739
1745
  scatterplots?: Scatterplots
1740
1746
  termdb: Termdb
1741
1747
  hiddenTermIds?: string[]
1748
+ boxplots?: BoxPlots
1742
1749
  }
1743
1750
 
1744
1751
  /** Customizations specific to the mass nav component */
package/src/routes/termdb.boxplot.ts CHANGED
@@ -14,6 +14,9 @@ export type BoxPlotRequest = {
14
14
  isLogScale: boolean
15
15
  /** sort plots by median value */
16
16
  orderByMedian: boolean
17
+ removeOutliers?: boolean
18
+ /** If true, show association tests table */
19
+ showAssocTests?: boolean
17
20
  /** term2 */
18
21
  overlayTw?: TermWrapper
19
22
  /** term0 */
@@ -21,7 +24,6 @@ export type BoxPlotRequest = {
21
24
  filter?: Filter
22
25
  filter0?: any
23
26
  __protected__: any
24
- removeOutliers?: boolean
25
27
  }
26
28
 
27
29
  export type BoxPlotResponse = {
@@ -33,10 +35,11 @@ export type BoxPlotResponse = {
33
35
  charts: {
34
36
  [chartId: string]: BoxPlotChartEntry
35
37
  }
38
+ /** Descriptive statistics for the entire response */
39
+ descrStats: DescrStats
36
40
  /** Categories not shown in the final plot */
37
41
  uncomputableValues: { label: string; value: number }[] | null
38
42
  error?: any
39
- descrStats: DescrStats
40
43
  }
41
44
 
42
45
  // chart containing a set of boxplots
@@ -45,13 +48,11 @@ export type BoxPlotChartEntry = {
45
48
  chartId: string
46
49
  /** Boxplot data within the chart */
47
50
  plots: BoxPlotEntry[]
48
- /** svg of chart, necessary for svg download */
49
- svg?: any
50
- /** Copied from BoxPlotResponse, necessary for
51
- ViewModel to process chart data */
52
- absMin?: number
53
- absMax?: number
54
- uncomputableValues?: { label: string; value: number }[] | null
51
+ /** Number of samples represented in the chart */
52
+ sampleCount: number
53
+ /** Wilcoxon test results for the chart formatted
54
+ * for #dom/table.js */
55
+ wilcoxon?: [{ value: string }, { value: string }, { html: string }][]
55
56
  }
56
57
 
57
58
  // individual boxplot
package/src/routes/termdb.chat.ts CHANGED
@@ -6,46 +6,24 @@ export type ChatRequest = {
6
6
  genome: string
7
7
  dslabel: string
8
8
  filter?: Filter
9
- filter0?: any // gdc
10
9
  /** user prompt */
11
10
  prompt: string
12
- __protected__: any
11
+ __protected__?: any
13
12
  }
14
13
 
15
- export type numeric_filter = {
16
- lower: number
17
- upper: number
14
+ type HtmlResponse = {
15
+ type: 'html'
16
+ /** for display only */
17
+ html: string
18
18
  }
19
-
20
- export type categorical_filter = {
21
- name: string
22
- }
23
-
24
- export type filter_variable = {
25
- name: string
26
- variable_type: 'float' | 'categories'
27
- cutoff: numeric_filter | categorical_filter
28
- }
29
-
30
- export type summary = {
31
- group_categories: string
32
- overlay?: string
33
- divide_by?: string
34
- filter?: filter_variable
35
- }
36
-
37
- export type plot = {
38
- /** Different chart types currently supported by the AI chatbot, will add types for the other charts when they will be implemented */
39
- chartType: summary | 'survival' | 'hierarchial' | 'snv_indel' | 'cnv' | 'variant_calling' | 'none' | 'dge'
19
+ export type PlotResponse = {
20
+ type: 'plot'
21
+ /** plot state. Currently only supports summary chart, will add other chart types later */
22
+ plot: object
23
+ /** Specifies what action to take e.g. Summary plot or no action. Will add more chart types later */
40
24
  }
41
25
 
42
- export type ChatResponse = {
43
- type: 'html' | 'plot' | 'json'
44
- /** when type=html, this value is set meaning server returns a chat response */
45
- html?: string
46
- /** when type=plot. value is json */
47
- plot?: any
48
- }
26
+ export type ChatResponse = HtmlResponse | PlotResponse
49
27
 
50
28
  export const ChatPayload: RoutePayload = {
51
29
  request: {