@sjcrh/proteinpaint-types 2.161.0 → 2.163.0

package/dist/{chunk-CSPVFAJ7.js → chunk-VQOCGHP2.js}

@@ -207,7 +207,7 @@ var validGRIN2Response = (input) => {
     const $io5 = (input3) => Array.isArray(input3.columns) && input3.columns.every((elem) => "object" === typeof elem && null !== elem && $io6(elem)) && (Array.isArray(input3.rows) && input3.rows.every((elem) => Array.isArray(elem) && elem.every((elem2) => "object" === typeof elem2 && null !== elem2 && $io7(elem2))));
     const $io6 = (input3) => "string" === typeof input3.label && "boolean" === typeof input3.sortable;
     const $io7 = (input3) => "string" === typeof input3.value || "number" === typeof input3.value;
-    const $io8 = (input3) => "number" === typeof input3.processingTime && "number" === typeof input3.grin2Time && "number" === typeof input3.plottingTime && "number" === typeof input3.totalTime;
+    const $io8 = (input3) => "string" === typeof input3.processingTime && "string" === typeof input3.grin2Time && "string" === typeof input3.plottingTime && "string" === typeof input3.totalTime;
     const $io9 = (input3) => (void 0 === input3.totalSamples || "number" === typeof input3.totalSamples) && (void 0 === input3.processedSamples || "number" === typeof input3.processedSamples) && (void 0 === input3.failedSamples || "number" === typeof input3.failedSamples) && (void 0 === input3.failedFiles || Array.isArray(input3.failedFiles) && input3.failedFiles.every((elem) => "object" === typeof elem && null !== elem && $io10(elem))) && (void 0 === input3.totalLesions || "number" === typeof input3.totalLesions) && (void 0 === input3.processedLesions || "number" === typeof input3.processedLesions) && (void 0 === input3.unprocessedSamples || "number" === typeof input3.unprocessedSamples) && (void 0 === input3.lesionCounts || "object" === typeof input3.lesionCounts && null !== input3.lesionCounts && false === Array.isArray(input3.lesionCounts) && $io11(input3.lesionCounts));
     const $io10 = (input3) => "string" === typeof input3.sampleName && "string" === typeof input3.filePath && "string" === typeof input3.error;
     const $io11 = (input3) => (void 0 === input3.total || "number" === typeof input3.total) && (void 0 === input3.byType || "object" === typeof input3.byType && null !== input3.byType && false === Array.isArray(input3.byType) && $io12(input3.byType));
@@ -436,21 +436,21 @@ var validGRIN2Response = (input) => {
         expected: "(number | string)",
         value: input3.value
       })].every((flag) => flag);
-      const $vo8 = (input3, _path2, _exceptionable2 = true) => ["number" === typeof input3.processingTime || $report(_exceptionable2, {
+      const $vo8 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.processingTime || $report(_exceptionable2, {
         path: _path2 + ".processingTime",
-        expected: "number",
+        expected: "string",
         value: input3.processingTime
-      }), "number" === typeof input3.grin2Time || $report(_exceptionable2, {
+      }), "string" === typeof input3.grin2Time || $report(_exceptionable2, {
         path: _path2 + ".grin2Time",
-        expected: "number",
+        expected: "string",
         value: input3.grin2Time
-      }), "number" === typeof input3.plottingTime || $report(_exceptionable2, {
+      }), "string" === typeof input3.plottingTime || $report(_exceptionable2, {
         path: _path2 + ".plottingTime",
-        expected: "number",
+        expected: "string",
         value: input3.plottingTime
-      }), "number" === typeof input3.totalTime || $report(_exceptionable2, {
+      }), "string" === typeof input3.totalTime || $report(_exceptionable2, {
         path: _path2 + ".totalTime",
-        expected: "number",
+        expected: "string",
         value: input3.totalTime
       })].every((flag) => flag);
       const $vo9 = (input3, _path2, _exceptionable2 = true) => [void 0 === input3.totalSamples || "number" === typeof input3.totalSamples || $report(_exceptionable2, {

package/dist/grin2.js

@@ -2,7 +2,7 @@ import {
   GRIN2Payload,
   validGRIN2Request,
   validGRIN2Response
-} from "./chunk-CSPVFAJ7.js";
+} from "./chunk-VQOCGHP2.js";
 import "./chunk-YNHC5SXO.js";
 export {
   GRIN2Payload,

package/dist/index.js

@@ -217,7 +217,7 @@ import {
   GRIN2Payload,
   validGRIN2Request,
   validGRIN2Response
-} from "./chunk-CSPVFAJ7.js";
+} from "./chunk-VQOCGHP2.js";
 import {
   healthcheckPayload,
   validHealthCheckRequest,

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@sjcrh/proteinpaint-types",
-  "version": "2.161.0",
+  "version": "2.163.0",
   "type": "module",
   "description": "Shared type definitions between ProteinPaint server and client code",
   "main": "src/index.ts",

package/src/dataset.ts

@@ -1405,6 +1405,12 @@ export type Termdb = {
 	}
 	/** if true, backend is allowed to send sample names to client in charts */
 	displaySampleIds?: (clientAuthResult: any) => boolean
+	/** ds-supplied async callback to build dictionary
+	argument: dataset object
+	sets termdb.q{}
+	no return
+	*/
+	buildDictionary?: (ds: any) => void
 	converSampleIds?: boolean
 	alwaysShowBranchTerms?: boolean
 	minimumSampleAllowed4filter?: number
@@ -1781,7 +1787,6 @@ export type Mds = BaseMds & {
 	cohort?: any
 	queries?: any
 	mutationAttribute?: any
-	dbFile?: string
 	version?: { label: string; link: string }
 	gene2mutcount?: any
 	locusAttribute?: any

package/src/routes/grin2.ts

@@ -148,13 +148,13 @@ export type GRIN2Response = {
 	/** Timing info for the analysis */
 	timing?: {
 		/** Time taken to run data processing */
-		processingTime: number
+		processingTime: string
 		/** Time taken to run GRIN2 processing */
-		grin2Time: number
+		grin2Time: string
 		/** Time taken to run Manhattan plot generation */
-		plottingTime: number
+		plottingTime: string
 		/** Total time taken for the entire run */
-		totalTime: number
+		totalTime: string
 	}
 	/** Detailed processing summary */
 	processingSummary?: {