@sjcrh/proteinpaint-types 2.159.0 → 2.161.0

package/dist/{chunk-4LOGWDCZ.js → chunk-3EVYVWI2.js}

@@ -21,7 +21,7 @@ var termdbSingleCellDEgenesPayload = {
 var validTermdbSingleCellDEgenesRequest = (input) => {
   const errors = [];
   const __is = (input2) => {
-    return "object" === typeof input2 && null !== input2 && ("string" === typeof input2.genome && "string" === typeof input2.dslabel && "string" === typeof input2.sample && "string" === typeof input2.columnName && "string" === typeof input2.categoryName);
+    return "object" === typeof input2 && null !== input2 && ("string" === typeof input2.genome && "string" === typeof input2.dslabel && "string" === typeof input2.sample && "string" === typeof input2.termId && "string" === typeof input2.categoryName);
   };
   if (false === __is(input)) {
     const $report = import_typia.createValidate.report(errors);
@@ -38,10 +38,10 @@ var validTermdbSingleCellDEgenesRequest = (input) => {
         path: _path2 + ".sample",
         expected: "string",
         value: input3.sample
-      }), "string" === typeof input3.columnName || $report(_exceptionable2, {
-        path: _path2 + ".columnName",
+      }), "string" === typeof input3.termId || $report(_exceptionable2, {
+        path: _path2 + ".termId",
         expected: "string",
-        value: input3.columnName
+        value: input3.termId
       }), "string" === typeof input3.categoryName || $report(_exceptionable2, {
         path: _path2 + ".categoryName",
         expected: "string",

package/dist/{chunk-D37D752M.js → chunk-CSPVFAJ7.js}

@@ -207,7 +207,7 @@ var validGRIN2Response = (input) => {
     const $io5 = (input3) => Array.isArray(input3.columns) && input3.columns.every((elem) => "object" === typeof elem && null !== elem && $io6(elem)) && (Array.isArray(input3.rows) && input3.rows.every((elem) => Array.isArray(elem) && elem.every((elem2) => "object" === typeof elem2 && null !== elem2 && $io7(elem2))));
     const $io6 = (input3) => "string" === typeof input3.label && "boolean" === typeof input3.sortable;
     const $io7 = (input3) => "string" === typeof input3.value || "number" === typeof input3.value;
-    const $io8 = (input3) => "number" === typeof input3.processingTime && "number" === typeof input3.grin2Time && "number" === typeof input3.totalTime;
+    const $io8 = (input3) => "number" === typeof input3.processingTime && "number" === typeof input3.grin2Time && "number" === typeof input3.plottingTime && "number" === typeof input3.totalTime;
     const $io9 = (input3) => (void 0 === input3.totalSamples || "number" === typeof input3.totalSamples) && (void 0 === input3.processedSamples || "number" === typeof input3.processedSamples) && (void 0 === input3.failedSamples || "number" === typeof input3.failedSamples) && (void 0 === input3.failedFiles || Array.isArray(input3.failedFiles) && input3.failedFiles.every((elem) => "object" === typeof elem && null !== elem && $io10(elem))) && (void 0 === input3.totalLesions || "number" === typeof input3.totalLesions) && (void 0 === input3.processedLesions || "number" === typeof input3.processedLesions) && (void 0 === input3.unprocessedSamples || "number" === typeof input3.unprocessedSamples) && (void 0 === input3.lesionCounts || "object" === typeof input3.lesionCounts && null !== input3.lesionCounts && false === Array.isArray(input3.lesionCounts) && $io11(input3.lesionCounts));
     const $io10 = (input3) => "string" === typeof input3.sampleName && "string" === typeof input3.filePath && "string" === typeof input3.error;
     const $io11 = (input3) => (void 0 === input3.total || "number" === typeof input3.total) && (void 0 === input3.byType || "object" === typeof input3.byType && null !== input3.byType && false === Array.isArray(input3.byType) && $io12(input3.byType));
@@ -444,6 +444,10 @@ var validGRIN2Response = (input) => {
         path: _path2 + ".grin2Time",
         expected: "number",
         value: input3.grin2Time
+      }), "number" === typeof input3.plottingTime || $report(_exceptionable2, {
+        path: _path2 + ".plottingTime",
+        expected: "number",
+        value: input3.plottingTime
       }), "number" === typeof input3.totalTime || $report(_exceptionable2, {
         path: _path2 + ".totalTime",
         expected: "number",

package/dist/{chunk-5BNDT4E6.js → chunk-GDZUCVIB.js}

@@ -20,7 +20,7 @@ var termdbSampleScatterPayload = {
 var validTermdbSampleScatterRequest = (input) => {
   const errors = [];
   const __is = (input2) => {
-    const $io0 = (input3) => "string" === typeof input3.genome && "string" === typeof input3.dslabel && true && true && true && true && (void 0 === input3.coordTWs || Array.isArray(input3.coordTWs)) && (void 0 === input3.plotName || "string" === typeof input3.plotName) && true && true && true;
+    const $io0 = (input3) => "string" === typeof input3.genome && "string" === typeof input3.dslabel && true && true && true && true && (void 0 === input3.coordTWs || Array.isArray(input3.coordTWs)) && (void 0 === input3.plotName || "string" === typeof input3.plotName) && true && true && (void 0 === input3.chartType || "string" === typeof input3.chartType) && true;
     return "object" === typeof input2 && null !== input2 && $io0(input2);
   };
   if (false === __is(input)) {
@@ -42,7 +42,11 @@ var validTermdbSampleScatterRequest = (input) => {
         path: _path2 + ".plotName",
         expected: "(string | undefined)",
         value: input3.plotName
-      }), true, true, true].every((flag) => flag);
+      }), true, true, void 0 === input3.chartType || "string" === typeof input3.chartType || $report(_exceptionable2, {
+        path: _path2 + ".chartType",
+        expected: "(string | undefined)",
+        value: input3.chartType
+      }), true].every((flag) => flag);
       return ("object" === typeof input2 && null !== input2 || $report(true, {
         path: _path + "",
         expected: "TermdbSampleScatterRequest",

package/dist/grin2.js

@@ -2,7 +2,7 @@ import {
   GRIN2Payload,
   validGRIN2Request,
   validGRIN2Response
-} from "./chunk-D37D752M.js";
+} from "./chunk-CSPVFAJ7.js";
 import "./chunk-YNHC5SXO.js";
 export {
   GRIN2Payload,

package/dist/index.js

@@ -42,7 +42,7 @@ import {
   termdbSampleScatterPayload,
   validTermdbSampleScatterRequest,
   validTermdbSampleScatterResponse
-} from "./chunk-5BNDT4E6.js";
+} from "./chunk-GDZUCVIB.js";
 import {
   termdbSingleSampleMutationPayload,
   validTermdbSingleSampleMutationRequest,
@@ -52,7 +52,7 @@ import {
   termdbSingleCellDEgenesPayload,
   validTermdbSingleCellDEgenesRequest,
   validTermdbSingleCellDEgenesResponse
-} from "./chunk-4LOGWDCZ.js";
+} from "./chunk-3EVYVWI2.js";
 import {
   termdbSingleCellDataPayload,
   validTermdbSingleCellDataRequest,
@@ -217,7 +217,7 @@ import {
   GRIN2Payload,
   validGRIN2Request,
   validGRIN2Response
-} from "./chunk-D37D752M.js";
+} from "./chunk-CSPVFAJ7.js";
 import {
   healthcheckPayload,
   validHealthCheckRequest,

package/dist/termdb.sampleScatter.js

@@ -2,7 +2,7 @@ import {
   termdbSampleScatterPayload,
   validTermdbSampleScatterRequest,
   validTermdbSampleScatterResponse
-} from "./chunk-5BNDT4E6.js";
+} from "./chunk-GDZUCVIB.js";
 import "./chunk-YNHC5SXO.js";
 export {
   termdbSampleScatterPayload,

package/dist/termdb.singlecellDEgenes.js

@@ -2,7 +2,7 @@ import {
   termdbSingleCellDEgenesPayload,
   validTermdbSingleCellDEgenesRequest,
   validTermdbSingleCellDEgenesResponse
-} from "./chunk-4LOGWDCZ.js";
+} from "./chunk-3EVYVWI2.js";
 import "./chunk-YNHC5SXO.js";
 export {
   termdbSingleCellDEgenesPayload,

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@sjcrh/proteinpaint-types",
-  "version": "2.159.0",
+  "version": "2.161.0",
   "type": "module",
   "description": "Shared type definitions between ProteinPaint server and client code",
   "main": "src/index.ts",

package/src/dataset.ts

@@ -756,28 +756,40 @@ export type SingleCellSamples = {
 	extraSampleTabLabel?: string
 }
 
-export type SingleCellDataGdc = {
-	src: 'gdcapi'
+type SingleCellDataBase = {
+	/** when a sample has multiple tsne plots, this flag allows allows all plots to share one cell type legend */
 	sameLegend: boolean
-	get?: (q: any) => any
+	/** name of ref cells? */
 	refName?: string
+	/** dynamically added getter */
+	get?: (q: any) => any
+	/** width and height of the plots */
+	settings?: { [key: string]: any }
+	/** In development
+	 * Replacing colorColumns in gdc plot objs.*/
+	twLst?: object[]
+}
+
+export type SingleCellDataGdc = SingleCellDataBase & {
+	src: 'gdcapi'
 	plots: GDCSingleCellPlot[]
-	settings?: { [key: string]: string }
 }
 
 export type SingleCellDEgeneGdc = {
 	src: 'gdcapi'
-	/** Column name.
-this must be the colorColumn from one of the plots. so that at the client app, as soon as the plot data have been loaded and maps rendered, client will find out the cell groups based on this columnName value, and show a drop down of these groups on UI. user selects a group, and pass it as request body to backend to get DE genes for this group
+	/** termId = Column name.
+this must be the colorColumn from one of the plots. In the client app, as soon as the plot data loads and maps renders, client finds the cell groups based on this columnName value, and shows a drop down of these groups on UI. user selects a group, and passes it as request body to backend to get DE genes for this group
 */
-	columnName: string
+	termId: string
 }
 
 type GDCSingleCellPlot = {
 	name: string
 	colorColumns: ColorColumn[]
 	coordsColumns: { x: number; y: number }
-	/** if true the plot is shown by default. otherwise hidden */
+	/** if true the plot is shown by default. otherwise hidden
+	 * Will not be needed when the singleCellPlot is depreciated.
+	 */
 	selected?: boolean
 }
 
@@ -818,19 +830,10 @@ type SingleCellPlot = {
 	/** if true the plot is shown by default. otherwise hidden */
 	selected?: boolean
 }
-export type SingleCellDataNative = {
+export type SingleCellDataNative = SingleCellDataBase & {
 	src: 'native'
-	/** when a sample has multiple tsne plots, this flag allows allows all plots to share one cell type legend */
-	sameLegend: boolean
 	/** available tsne type of plots for each sample */
 	plots: SingleCellPlot[]
-	/** name of ref cells? */
-	refName?: string
-	/** dynamically added getter */
-	get?: (q: any) => any
-	/** width and height of the plots */
-
-	settings?: { [key: string]: any }
 }
 
 export type SingleCellQuery = {

package/src/routes/grin2.ts

@@ -151,6 +151,8 @@ export type GRIN2Response = {
 		processingTime: number
 		/** Time taken to run GRIN2 processing */
 		grin2Time: number
+		/** Time taken to run Manhattan plot generation */
+		plottingTime: number
 		/** Total time taken for the entire run */
 		totalTime: number
 	}

package/src/routes/termdb.sampleScatter.ts

@@ -13,6 +13,7 @@ export type TermdbSampleScatterRequest = {
 	plotName?: string
 	filter?: any
 	filter0?: any
+	chartType?: string
 	__protected__?: any // auth token for accessing protected data
 }
 

package/src/routes/termdb.singlecellDEgenes.ts

@@ -7,12 +7,15 @@ export type TermdbSingleCellDEgenesRequest = {
 	/** Dataset label */
 	dslabel: string
 	/** Sample name
-	for GDC the value is "seurat.analysis.tsv" file UUID rather than sample name. the file contains the analysis results for an experiment
-	*/
+	for GDC the value is "seurat.analysis.tsv" file UUID 
+	rather than sample name. the file contains the analysis 
+	results for an experiment */
 	sample: string
-	/** column name to provide cell groups/clustering, for which DE genes are precomputed.  */
-	columnName: string
-	/** User selected cell group/cluster, corresponds to columnName, for which DE genes will be returned to client */
+	/** column name to provide cell groups/clustering,
+	 * for which DE genes are precomputed.  */
+	termId: string
+	/** User selected cell group/cluster, corresponds to termId,
+	 * for which DE genes will be returned to client */
 	categoryName: string
 }