@sjcrh/proteinpaint-types 2.157.0 → 2.158.0

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Files changed (6) hide show
  1. package/dist/{chunk-WCF7WIJY.js → chunk-D37D752M.js} +5 -1
  2. package/dist/grin2.js +1 -1
  3. package/dist/index.js +1 -1
  4. package/package.json +1 -1
  5. package/src/dataset.ts +1 -0
  6. package/src/routes/grin2.ts +6 -0
package/dist/{chunk-WCF7WIJY.js → chunk-D37D752M.js} RENAMED
@@ -20,7 +20,7 @@ var GRIN2Payload = {
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  var validGRIN2Request = (input) => {
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  const errors = [];
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  const __is = (input2) => {
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- const $io0 = (input3) => "string" === typeof input3.genome && "string" === typeof input3.dslabel && (void 0 === input3.devicePixelRatio || "number" === typeof input3.devicePixelRatio) && (void 0 === input3.width || "number" === typeof input3.width) && (void 0 === input3.height || "number" === typeof input3.height) && (void 0 === input3.pngDotRadius || "number" === typeof input3.pngDotRadius) && true && (void 0 === input3.snvindelOptions || "object" === typeof input3.snvindelOptions && null !== input3.snvindelOptions && false === Array.isArray(input3.snvindelOptions) && $io1(input3.snvindelOptions)) && (void 0 === input3.cnvOptions || "object" === typeof input3.cnvOptions && null !== input3.cnvOptions && false === Array.isArray(input3.cnvOptions) && $io2(input3.cnvOptions)) && (void 0 === input3.fusionOptions || "object" === typeof input3.fusionOptions && null !== input3.fusionOptions && false === Array.isArray(input3.fusionOptions) && $io3(input3.fusionOptions)) && (void 0 === input3.svOptions || "object" === typeof input3.svOptions && null !== input3.svOptions && false === Array.isArray(input3.svOptions) && $io4(input3.svOptions)) && (void 0 === input3.maxGenesToShow || "number" === typeof input3.maxGenesToShow);
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+ const $io0 = (input3) => "string" === typeof input3.genome && "string" === typeof input3.dslabel && (void 0 === input3.devicePixelRatio || "number" === typeof input3.devicePixelRatio) && (void 0 === input3.width || "number" === typeof input3.width) && (void 0 === input3.height || "number" === typeof input3.height) && (void 0 === input3.pngDotRadius || "number" === typeof input3.pngDotRadius) && true && (void 0 === input3.qValueThreshold || "number" === typeof input3.qValueThreshold) && true && (void 0 === input3.snvindelOptions || "object" === typeof input3.snvindelOptions && null !== input3.snvindelOptions && false === Array.isArray(input3.snvindelOptions) && $io1(input3.snvindelOptions)) && (void 0 === input3.cnvOptions || "object" === typeof input3.cnvOptions && null !== input3.cnvOptions && false === Array.isArray(input3.cnvOptions) && $io2(input3.cnvOptions)) && (void 0 === input3.fusionOptions || "object" === typeof input3.fusionOptions && null !== input3.fusionOptions && false === Array.isArray(input3.fusionOptions) && $io3(input3.fusionOptions)) && (void 0 === input3.svOptions || "object" === typeof input3.svOptions && null !== input3.svOptions && false === Array.isArray(input3.svOptions) && $io4(input3.svOptions)) && (void 0 === input3.maxGenesToShow || "number" === typeof input3.maxGenesToShow);
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  const $io1 = (input3) => (void 0 === input3.minTotalDepth || "number" === typeof input3.minTotalDepth) && (void 0 === input3.minAltAlleleCount || "number" === typeof input3.minAltAlleleCount) && (void 0 === input3.consequences || Array.isArray(input3.consequences) && input3.consequences.every((elem) => "string" === typeof elem)) && (void 0 === input3.hyperMutator || "number" === typeof input3.hyperMutator) && (void 0 === input3.fivePrimeFlankSize || "number" === typeof input3.fivePrimeFlankSize) && (void 0 === input3.threePrimeFlankSize || "number" === typeof input3.threePrimeFlankSize);
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  const $io2 = (input3) => (void 0 === input3.lossThreshold || "number" === typeof input3.lossThreshold) && (void 0 === input3.gainThreshold || "number" === typeof input3.gainThreshold) && (void 0 === input3.maxSegLength || "number" === typeof input3.maxSegLength) && (void 0 === input3.hyperMutator || "number" === typeof input3.hyperMutator) && (void 0 === input3.fivePrimeFlankSize || "number" === typeof input3.fivePrimeFlankSize) && (void 0 === input3.threePrimeFlankSize || "number" === typeof input3.threePrimeFlankSize);
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  const $io3 = (input3) => (void 0 === input3.fivePrimeFlankSize || "number" === typeof input3.fivePrimeFlankSize) && (void 0 === input3.threePrimeFlankSize || "number" === typeof input3.threePrimeFlankSize);
@@ -54,6 +54,10 @@ var validGRIN2Request = (input) => {
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  path: _path2 + ".pngDotRadius",
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  expected: "(number | undefined)",
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  value: input3.pngDotRadius
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+ }), true, void 0 === input3.qValueThreshold || "number" === typeof input3.qValueThreshold || $report(_exceptionable2, {
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+ path: _path2 + ".qValueThreshold",
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+ expected: "(number | undefined)",
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+ value: input3.qValueThreshold
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  }), true, void 0 === input3.snvindelOptions || ("object" === typeof input3.snvindelOptions && null !== input3.snvindelOptions && false === Array.isArray(input3.snvindelOptions) || $report(_exceptionable2, {
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  path: _path2 + ".snvindelOptions",
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  expected: "(__type | undefined)",
package/dist/grin2.js CHANGED
@@ -2,7 +2,7 @@ import {
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  GRIN2Payload,
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  validGRIN2Request,
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  validGRIN2Response
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- } from "./chunk-WCF7WIJY.js";
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+ } from "./chunk-D37D752M.js";
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  import "./chunk-YNHC5SXO.js";
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  export {
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  GRIN2Payload,
package/dist/index.js CHANGED
@@ -217,7 +217,7 @@ import {
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  GRIN2Payload,
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  validGRIN2Request,
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  validGRIN2Response
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- } from "./chunk-WCF7WIJY.js";
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+ } from "./chunk-D37D752M.js";
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  import {
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  healthcheckPayload,
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  validHealthCheckRequest,
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@sjcrh/proteinpaint-types",
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- "version": "2.157.0",
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+ "version": "2.158.0",
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  "type": "module",
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  "description": "Shared type definitions between ProteinPaint server and client code",
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  "main": "src/index.ts",
package/src/dataset.ts CHANGED
@@ -1488,6 +1488,7 @@ keep this setting here for reason of:
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  }
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  */
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  q?: any
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+ /** mclass override (color, label etc) */
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  mclass?: Mclass
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  lollipop?: any
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  hasAncestry?: boolean
package/src/routes/grin2.ts CHANGED
@@ -29,6 +29,12 @@ export type GRIN2Request = {
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  /** Radius of the PNG rendered dots (default: 2) */
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  pngDotRadius?: number
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+ /** Lesion type colors */
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+ lesionTypeColors?: any
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+
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+ /** Threshold for q-values to be included as interactive dots */
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+ qValueThreshold?: number
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+
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  /** Filter from existing PP infrastructure */
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  filter?: any // Filter object passed to get_samples(filter, ds)
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