@sjcrh/proteinpaint-types 2.151.1-0 → 2.152.1-0

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Files changed (37) hide show
  1. package/dist/brainImaging.js +1 -1
  2. package/dist/{chunk-2WSENLMK.js → chunk-46YIGVUP.js} +44 -24
  3. package/dist/{chunk-TTUU5XQC.js → chunk-5F24QFE7.js} +471 -253
  4. package/dist/{chunk-KSVIBMFQ.js → chunk-5OMJAZK4.js} +323 -185
  5. package/dist/{chunk-WL7ZVGZS.js → chunk-C27KCAQH.js} +476 -302
  6. package/dist/{chunk-5MGSKBUU.js → chunk-CC32XCET.js} +950 -574
  7. package/dist/{chunk-OZ3CVAFP.js → chunk-EBPGV76U.js} +279 -157
  8. package/dist/{chunk-KQNLROUN.js → chunk-GZKTMVAU.js} +750 -410
  9. package/dist/{chunk-3SKFYOKV.js → chunk-JT4DSNJ3.js} +476 -302
  10. package/dist/{chunk-75GS5ZG5.js → chunk-LXW2FSLR.js} +526 -352
  11. package/dist/{chunk-RA7IEGS4.js → chunk-MCL6EDOS.js} +482 -308
  12. package/dist/{chunk-DBSRGRXR.js → chunk-OAETETAO.js} +279 -157
  13. package/dist/{chunk-4MLQS6N7.js → chunk-OLWNM7QP.js} +279 -157
  14. package/dist/{chunk-MMFL6N5M.js → chunk-OLXOQLZH.js} +279 -157
  15. package/dist/{chunk-MIOIOFBZ.js → chunk-TD4YLTHL.js} +17 -3
  16. package/dist/{chunk-4SJC57Y6.js → chunk-ZXPLL3NT.js} +476 -302
  17. package/dist/correlationVolcano.js +1 -1
  18. package/dist/gdc.grin2.js +1 -1
  19. package/dist/gdc.maf.js +1 -1
  20. package/dist/index.js +15 -15
  21. package/dist/termdb.boxplot.js +1 -1
  22. package/dist/termdb.categories.js +1 -1
  23. package/dist/termdb.chat.js +1 -1
  24. package/dist/termdb.cluster.js +1 -1
  25. package/dist/termdb.descrstats.js +1 -1
  26. package/dist/termdb.numericcategories.js +1 -1
  27. package/dist/termdb.percentile.js +1 -1
  28. package/dist/termdb.termsbyids.js +1 -1
  29. package/dist/termdb.topTermsByType.js +1 -1
  30. package/dist/termdb.topVariablyExpressedGenes.js +1 -1
  31. package/dist/termdb.violin.js +1 -1
  32. package/package.json +1 -1
  33. package/src/dataset.ts +7 -280
  34. package/src/routes/gdc.grin2.ts +2 -2
  35. package/src/routes/gdc.maf.ts +3 -3
  36. package/src/terms/numeric.ts +17 -1
  37. package/src/terms/term.ts +5 -0
package/dist/brainImaging.js CHANGED
@@ -2,7 +2,7 @@ import {
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  brainImagingPayload,
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  validBrainImagingRequest,
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  validBrainImagingResponse
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- } from "./chunk-KSVIBMFQ.js";
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+ } from "./chunk-5OMJAZK4.js";
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  import "./chunk-YNHC5SXO.js";
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  export {
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  brainImagingPayload,
package/dist/{chunk-2WSENLMK.js → chunk-46YIGVUP.js} RENAMED
@@ -28,9 +28,10 @@ var runGRIN2Payload = {
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  var validGdcGRIN2listRequest = (input) => {
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  const errors = [];
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  const __is = (input2) => {
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- const $io0 = (input3) => (void 0 === input3.mafOptions || "object" === typeof input3.mafOptions && null !== input3.mafOptions && $io1(input3.mafOptions)) && (void 0 === input3.cnvOptions || "object" === typeof input3.cnvOptions && null !== input3.cnvOptions && false === Array.isArray(input3.cnvOptions) && $io2(input3.cnvOptions)) && true;
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- const $io1 = (input3) => "WXS" === input3.experimentalStrategy;
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- const $io2 = (input3) => void 0 === input3.dataType || "string" === typeof input3.dataType;
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+ const $io0 = (input3) => (void 0 === input3.mafOptions || "object" === typeof input3.mafOptions && null !== input3.mafOptions && $io1(input3.mafOptions)) && (void 0 === input3.cnvOptions || "object" === typeof input3.cnvOptions && null !== input3.cnvOptions && false === Array.isArray(input3.cnvOptions) && $io3(input3.cnvOptions)) && true;
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+ const $io1 = (input3) => "object" === typeof input3.experimentalStrategy && null !== input3.experimentalStrategy && $io2(input3.experimentalStrategy);
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+ const $io2 = (input3) => "WXS" === input3.wxs;
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+ const $io3 = (input3) => void 0 === input3.dataType || "string" === typeof input3.dataType;
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  return "object" === typeof input2 && null !== input2 && false === Array.isArray(input2) && $io0(input2);
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  };
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  if (false === __is(input)) {
@@ -48,17 +49,26 @@ var validGdcGRIN2listRequest = (input) => {
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  path: _path2 + ".cnvOptions",
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  expected: "(__type.o1 | undefined)",
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  value: input3.cnvOptions
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- })) && $vo2(input3.cnvOptions, _path2 + ".cnvOptions", _exceptionable2) || $report(_exceptionable2, {
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+ })) && $vo3(input3.cnvOptions, _path2 + ".cnvOptions", _exceptionable2) || $report(_exceptionable2, {
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  path: _path2 + ".cnvOptions",
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  expected: "(__type.o1 | undefined)",
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  value: input3.cnvOptions
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  }), true].every((flag) => flag);
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- const $vo1 = (input3, _path2, _exceptionable2 = true) => ["WXS" === input3.experimentalStrategy || $report(_exceptionable2, {
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+ const $vo1 = (input3, _path2, _exceptionable2 = true) => [("object" === typeof input3.experimentalStrategy && null !== input3.experimentalStrategy || $report(_exceptionable2, {
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  path: _path2 + ".experimentalStrategy",
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- expected: '"WXS"',
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+ expected: "ExperimentalStrategy",
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+ value: input3.experimentalStrategy
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+ })) && $vo2(input3.experimentalStrategy, _path2 + ".experimentalStrategy", _exceptionable2) || $report(_exceptionable2, {
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+ path: _path2 + ".experimentalStrategy",
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+ expected: "ExperimentalStrategy",
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  value: input3.experimentalStrategy
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  })].every((flag) => flag);
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- const $vo2 = (input3, _path2, _exceptionable2 = true) => [void 0 === input3.dataType || "string" === typeof input3.dataType || $report(_exceptionable2, {
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+ const $vo2 = (input3, _path2, _exceptionable2 = true) => ["WXS" === input3.wxs || $report(_exceptionable2, {
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+ path: _path2 + ".wxs",
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+ expected: '"WXS"',
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+ value: input3.wxs
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+ })].every((flag) => flag);
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+ const $vo3 = (input3, _path2, _exceptionable2 = true) => [void 0 === input3.dataType || "string" === typeof input3.dataType || $report(_exceptionable2, {
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  path: _path2 + ".dataType",
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  expected: "(string | undefined)",
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  value: input3.dataType
@@ -84,15 +94,16 @@ var validGdcGRIN2listRequest = (input) => {
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  var validGdcGRIN2listResponse = (input) => {
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  const errors = [];
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  const __is = (input2) => {
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- const $io0 = (input3) => (void 0 === input3.mafFiles || "object" === typeof input3.mafFiles && null !== input3.mafFiles && $io1(input3.mafFiles)) && (void 0 === input3.cnvFiles || "object" === typeof input3.cnvFiles && null !== input3.cnvFiles && $io8(input3.cnvFiles));
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- const $io1 = (input3) => Array.isArray(input3.files) && input3.files.every((elem) => "object" === typeof elem && null !== elem && $io2(elem)) && "number" === typeof input3.filesTotal && "number" === typeof input3.maxTotalSizeCompressed && (void 0 === input3.fileCounts || "object" === typeof input3.fileCounts && null !== input3.fileCounts && $io3(input3.fileCounts)) && (void 0 === input3.appliedFilters || "object" === typeof input3.appliedFilters && null !== input3.appliedFilters && false === Array.isArray(input3.appliedFilters) && $io4(input3.appliedFilters)) && (void 0 === input3.deduplicationStats || "object" === typeof input3.deduplicationStats && null !== input3.deduplicationStats && $io5(input3.deduplicationStats));
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+ const $io0 = (input3) => (void 0 === input3.mafFiles || "object" === typeof input3.mafFiles && null !== input3.mafFiles && $io1(input3.mafFiles)) && (void 0 === input3.cnvFiles || "object" === typeof input3.cnvFiles && null !== input3.cnvFiles && $io9(input3.cnvFiles));
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+ const $io1 = (input3) => Array.isArray(input3.files) && input3.files.every((elem) => "object" === typeof elem && null !== elem && $io2(elem)) && "number" === typeof input3.filesTotal && "number" === typeof input3.maxTotalSizeCompressed && (void 0 === input3.fileCounts || "object" === typeof input3.fileCounts && null !== input3.fileCounts && $io3(input3.fileCounts)) && (void 0 === input3.appliedFilters || "object" === typeof input3.appliedFilters && null !== input3.appliedFilters && false === Array.isArray(input3.appliedFilters) && $io4(input3.appliedFilters)) && (void 0 === input3.deduplicationStats || "object" === typeof input3.deduplicationStats && null !== input3.deduplicationStats && $io6(input3.deduplicationStats));
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  const $io2 = (input3) => "string" === typeof input3.id && "string" === typeof input3.case_submitter_id && "string" === typeof input3.case_uuid && "number" === typeof input3.file_size && (Array.isArray(input3.sample_types) && input3.sample_types.every((elem) => "string" === typeof elem)) && "string" === typeof input3.project_id && (void 0 === input3.file_format || "MAF" === input3.file_format);
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  const $io3 = (input3) => "number" === typeof input3.maf;
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- const $io4 = (input3) => void 0 === input3.experimentalStrategy || "WXS" === input3.experimentalStrategy;
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- const $io5 = (input3) => "number" === typeof input3.originalFileCount && "number" === typeof input3.deduplicatedFileCount && "number" === typeof input3.duplicatesRemoved && (void 0 === input3.caseDetails || Array.isArray(input3.caseDetails) && input3.caseDetails.every((elem) => "object" === typeof elem && null !== elem && $io6(elem))) && (Array.isArray(input3.filteredFiles) && input3.filteredFiles.every((elem) => "object" === typeof elem && null !== elem && $io7(elem)));
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- const $io6 = (input3) => "string" === typeof input3.caseName && "number" === typeof input3.fileCount && "number" === typeof input3.keptFileSize;
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- const $io7 = (input3) => "string" === typeof input3.fileId && "number" === typeof input3.fileSize && "string" === typeof input3.reason;
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- const $io8 = (input3) => Array.isArray(input3.files) && input3.files.every((elem) => "object" === typeof elem && null !== elem && $io2(elem)) && "number" === typeof input3.maxTotalSizeCompressed;
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+ const $io4 = (input3) => void 0 === input3.experimentalStrategy || "object" === typeof input3.experimentalStrategy && null !== input3.experimentalStrategy && $io5(input3.experimentalStrategy);
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+ const $io5 = (input3) => "WXS" === input3.wxs;
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+ const $io6 = (input3) => "number" === typeof input3.originalFileCount && "number" === typeof input3.deduplicatedFileCount && "number" === typeof input3.duplicatesRemoved && (void 0 === input3.caseDetails || Array.isArray(input3.caseDetails) && input3.caseDetails.every((elem) => "object" === typeof elem && null !== elem && $io7(elem))) && (Array.isArray(input3.filteredFiles) && input3.filteredFiles.every((elem) => "object" === typeof elem && null !== elem && $io8(elem)));
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+ const $io7 = (input3) => "string" === typeof input3.caseName && "number" === typeof input3.fileCount && "number" === typeof input3.keptFileSize;
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+ const $io8 = (input3) => "string" === typeof input3.fileId && "number" === typeof input3.fileSize && "string" === typeof input3.reason;
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+ const $io9 = (input3) => Array.isArray(input3.files) && input3.files.every((elem) => "object" === typeof elem && null !== elem && $io2(elem)) && "number" === typeof input3.maxTotalSizeCompressed;
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  return "object" === typeof input2 && null !== input2 && false === Array.isArray(input2) && $io0(input2);
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  };
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  if (false === __is(input)) {
@@ -110,7 +121,7 @@ var validGdcGRIN2listResponse = (input) => {
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  path: _path2 + ".cnvFiles",
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  expected: "(__type.o6 | undefined)",
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  value: input3.cnvFiles
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- })) && $vo8(input3.cnvFiles, _path2 + ".cnvFiles", _exceptionable2) || $report(_exceptionable2, {
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+ })) && $vo9(input3.cnvFiles, _path2 + ".cnvFiles", _exceptionable2) || $report(_exceptionable2, {
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  path: _path2 + ".cnvFiles",
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  expected: "(__type.o6 | undefined)",
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  value: input3.cnvFiles
@@ -159,7 +170,7 @@ var validGdcGRIN2listResponse = (input) => {
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  path: _path2 + ".deduplicationStats",
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  expected: "(__type.o3 | undefined)",
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  value: input3.deduplicationStats
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- })) && $vo5(input3.deduplicationStats, _path2 + ".deduplicationStats", _exceptionable2) || $report(_exceptionable2, {
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+ })) && $vo6(input3.deduplicationStats, _path2 + ".deduplicationStats", _exceptionable2) || $report(_exceptionable2, {
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  path: _path2 + ".deduplicationStats",
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  expected: "(__type.o3 | undefined)",
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  value: input3.deduplicationStats
@@ -206,12 +217,21 @@ var validGdcGRIN2listResponse = (input) => {
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  expected: "number",
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  value: input3.maf
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  })].every((flag) => flag);
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- const $vo4 = (input3, _path2, _exceptionable2 = true) => [void 0 === input3.experimentalStrategy || "WXS" === input3.experimentalStrategy || $report(_exceptionable2, {
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+ const $vo4 = (input3, _path2, _exceptionable2 = true) => [void 0 === input3.experimentalStrategy || ("object" === typeof input3.experimentalStrategy && null !== input3.experimentalStrategy || $report(_exceptionable2, {
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  path: _path2 + ".experimentalStrategy",
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- expected: '("WXS" | undefined)',
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+ expected: "(ExperimentalStrategy | undefined)",
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  value: input3.experimentalStrategy
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+ })) && $vo5(input3.experimentalStrategy, _path2 + ".experimentalStrategy", _exceptionable2) || $report(_exceptionable2, {
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+ path: _path2 + ".experimentalStrategy",
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+ expected: "(ExperimentalStrategy | undefined)",
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+ value: input3.experimentalStrategy
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+ })].every((flag) => flag);
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+ const $vo5 = (input3, _path2, _exceptionable2 = true) => ["WXS" === input3.wxs || $report(_exceptionable2, {
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+ path: _path2 + ".wxs",
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+ expected: '"WXS"',
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+ value: input3.wxs
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  })].every((flag) => flag);
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- const $vo5 = (input3, _path2, _exceptionable2 = true) => ["number" === typeof input3.originalFileCount || $report(_exceptionable2, {
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+ const $vo6 = (input3, _path2, _exceptionable2 = true) => ["number" === typeof input3.originalFileCount || $report(_exceptionable2, {
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  path: _path2 + ".originalFileCount",
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  expected: "number",
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  value: input3.originalFileCount
@@ -231,7 +251,7 @@ var validGdcGRIN2listResponse = (input) => {
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  path: _path2 + ".caseDetails[" + _index3 + "]",
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  expected: "__type.o4",
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  value: elem
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- })) && $vo6(elem, _path2 + ".caseDetails[" + _index3 + "]", _exceptionable2) || $report(_exceptionable2, {
254
+ })) && $vo7(elem, _path2 + ".caseDetails[" + _index3 + "]", _exceptionable2) || $report(_exceptionable2, {
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  path: _path2 + ".caseDetails[" + _index3 + "]",
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  expected: "__type.o4",
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  value: elem
@@ -247,7 +267,7 @@ var validGdcGRIN2listResponse = (input) => {
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  path: _path2 + ".filteredFiles[" + _index4 + "]",
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  expected: "__type.o5",
249
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  value: elem
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- })) && $vo7(elem, _path2 + ".filteredFiles[" + _index4 + "]", _exceptionable2) || $report(_exceptionable2, {
270
+ })) && $vo8(elem, _path2 + ".filteredFiles[" + _index4 + "]", _exceptionable2) || $report(_exceptionable2, {
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  path: _path2 + ".filteredFiles[" + _index4 + "]",
252
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  expected: "__type.o5",
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  value: elem
@@ -256,7 +276,7 @@ var validGdcGRIN2listResponse = (input) => {
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  expected: "Array<__type>.o1",
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  value: input3.filteredFiles
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  })].every((flag) => flag);
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- const $vo6 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.caseName || $report(_exceptionable2, {
279
+ const $vo7 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.caseName || $report(_exceptionable2, {
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  path: _path2 + ".caseName",
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  expected: "string",
262
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  value: input3.caseName
@@ -269,7 +289,7 @@ var validGdcGRIN2listResponse = (input) => {
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  expected: "number",
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  value: input3.keptFileSize
271
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  })].every((flag) => flag);
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- const $vo7 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.fileId || $report(_exceptionable2, {
292
+ const $vo8 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.fileId || $report(_exceptionable2, {
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  path: _path2 + ".fileId",
274
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  expected: "string",
275
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  value: input3.fileId
@@ -282,7 +302,7 @@ var validGdcGRIN2listResponse = (input) => {
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  expected: "string",
283
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  value: input3.reason
284
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  })].every((flag) => flag);
285
- const $vo8 = (input3, _path2, _exceptionable2 = true) => [(Array.isArray(input3.files) || $report(_exceptionable2, {
305
+ const $vo9 = (input3, _path2, _exceptionable2 = true) => [(Array.isArray(input3.files) || $report(_exceptionable2, {
286
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  path: _path2 + ".files",
287
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  expected: "Array<GdcGRIN2File>",
288
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  value: input3.files