@sjcrh/proteinpaint-types 2.148.1 → 2.149.0

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Files changed (8) hide show
  1. package/dist/{chunk-CP26DR4V.js → chunk-FIQM2YN4.js} +10 -2
  2. package/dist/{chunk-CT6IBFVP.js → chunk-VUKRI3TG.js} +13 -1
  3. package/dist/index.js +2 -2
  4. package/dist/termdb.DE.js +1 -1
  5. package/dist/wsimages.js +1 -1
  6. package/package.json +1 -1
  7. package/src/routes/termdb.DE.ts +4 -0
  8. package/src/routes/wsimages.ts +1 -0
package/dist/{chunk-CP26DR4V.js → chunk-FIQM2YN4.js} RENAMED
@@ -22,7 +22,7 @@ var diffExpPayload = {
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  var validDERequest = (input) => {
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  const errors = [];
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  const __is = (input2) => {
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- const $io0 = (input3) => "string" === typeof input3.genome && "string" === typeof input3.dslabel && true && "number" === typeof input3.min_count && "number" === typeof input3.min_total_count && ("text" === input3.storage_type || "HDF5" === input3.storage_type) && (void 0 === input3.method || "string" === typeof input3.method) && true && true;
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+ const $io0 = (input3) => "string" === typeof input3.genome && "string" === typeof input3.dslabel && true && "number" === typeof input3.min_count && "number" === typeof input3.min_total_count && "number" === typeof input3.cpm_cutoff && ("text" === input3.storage_type || "HDF5" === input3.storage_type) && (void 0 === input3.method || "string" === typeof input3.method) && true && true;
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  return "object" === typeof input2 && null !== input2 && $io0(input2);
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  };
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  if (false === __is(input)) {
@@ -44,6 +44,10 @@ var validDERequest = (input) => {
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  path: _path2 + ".min_total_count",
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  expected: "number",
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  value: input3.min_total_count
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+ }), "number" === typeof input3.cpm_cutoff || $report(_exceptionable2, {
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+ path: _path2 + ".cpm_cutoff",
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+ expected: "number",
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+ value: input3.cpm_cutoff
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  }), "text" === input3.storage_type || "HDF5" === input3.storage_type || $report(_exceptionable2, {
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  path: _path2 + ".storage_type",
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  expected: '("HDF5" | "text")',
@@ -74,7 +78,7 @@ var validDERequest = (input) => {
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  var validDEResponse = (input) => {
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  const errors = [];
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  const __is = (input2) => {
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- const $io0 = (input3) => Array.isArray(input3.data) && input3.data.every((elem) => "object" === typeof elem && null !== elem && $io1(elem)) && "number" === typeof input3.sample_size1 && "number" === typeof input3.sample_size2 && "string" === typeof input3.method && (void 0 === input3.images || Array.isArray(input3.images) && input3.images.every((elem) => "object" === typeof elem && null !== elem && $io2(elem)));
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+ const $io0 = (input3) => Array.isArray(input3.data) && input3.data.every((elem) => "object" === typeof elem && null !== elem && $io1(elem)) && "number" === typeof input3.sample_size1 && "number" === typeof input3.sample_size2 && "string" === typeof input3.method && (void 0 === input3.images || Array.isArray(input3.images) && input3.images.every((elem) => "object" === typeof elem && null !== elem && $io2(elem))) && (void 0 === input3.bcv || "number" === typeof input3.bcv);
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  const $io1 = (input3) => "number" === typeof input3.adjusted_p_value && "number" === typeof input3.original_p_value && "number" === typeof input3.fold_change && "string" === typeof input3.gene_id && "string" === typeof input3.gene_name;
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  const $io2 = (input3) => "string" === typeof input3.src && "number" === typeof input3.size && "string" === typeof input3.key;
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  return "object" === typeof input2 && null !== input2 && $io0(input2);
@@ -126,6 +130,10 @@ var validDEResponse = (input) => {
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  path: _path2 + ".images",
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  expected: "(Array<DEImage> | undefined)",
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  value: input3.images
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+ }), void 0 === input3.bcv || "number" === typeof input3.bcv || $report(_exceptionable2, {
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+ path: _path2 + ".bcv",
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+ expected: "(number | undefined)",
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+ value: input3.bcv
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  })].every((flag) => flag);
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  const $vo1 = (input3, _path2, _exceptionable2 = true) => ["number" === typeof input3.adjusted_p_value || $report(_exceptionable2, {
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  path: _path2 + ".adjusted_p_value",
package/dist/{chunk-CT6IBFVP.js → chunk-VUKRI3TG.js} RENAMED
@@ -69,7 +69,7 @@ var validWSImagesRequest = (input) => {
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  var validWSImagesResponse = (input) => {
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  const errors = [];
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  const __is = (input2) => {
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- const $io0 = (input3) => (void 0 === input3.wsiSessionId || "string" === typeof input3.wsiSessionId) && (void 0 === input3.overlays || Array.isArray(input3.overlays) && input3.overlays.every((elem) => "object" === typeof elem && null !== elem && $io1(elem))) && (Array.isArray(input3.slide_dimensions) && input3.slide_dimensions.every((elem) => "number" === typeof elem)) && "string" === typeof input3.status && (void 0 === input3.error || "string" === typeof input3.error);
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+ const $io0 = (input3) => (void 0 === input3.wsiSessionId || "string" === typeof input3.wsiSessionId) && (void 0 === input3.overlays || Array.isArray(input3.overlays) && input3.overlays.every((elem) => "object" === typeof elem && null !== elem && $io1(elem))) && (Array.isArray(input3.slide_dimensions) && input3.slide_dimensions.every((elem) => "number" === typeof elem)) && (Array.isArray(input3.mpp) && input3.mpp.every((elem) => "number" === typeof elem)) && "string" === typeof input3.status && (void 0 === input3.error || "string" === typeof input3.error);
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  const $io1 = (input3) => "string" === typeof input3.layerNumber && "string" === typeof input3.predictionOverlayType;
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  return "object" === typeof input2 && null !== input2 && $io0(input2);
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  };
@@ -108,6 +108,18 @@ var validWSImagesResponse = (input) => {
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  path: _path2 + ".slide_dimensions",
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  expected: "Array<number>",
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  value: input3.slide_dimensions
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+ }), (Array.isArray(input3.mpp) || $report(_exceptionable2, {
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+ path: _path2 + ".mpp",
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+ expected: "Array<number>",
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+ value: input3.mpp
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+ })) && input3.mpp.map((elem, _index3) => "number" === typeof elem || $report(_exceptionable2, {
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+ path: _path2 + ".mpp[" + _index3 + "]",
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+ expected: "number",
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+ value: elem
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+ })).every((flag) => flag) || $report(_exceptionable2, {
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+ path: _path2 + ".mpp",
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+ expected: "Array<number>",
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+ value: input3.mpp
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  }), "string" === typeof input3.status || $report(_exceptionable2, {
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  path: _path2 + ".status",
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  expected: "string",
package/dist/index.js CHANGED
@@ -17,7 +17,7 @@ import {
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  validWSImagesRequest,
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  validWSImagesResponse,
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  wsImagesPayload
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- } from "./chunk-CT6IBFVP.js";
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+ } from "./chunk-VUKRI3TG.js";
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  import {
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  validWSISamplesRequest,
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  validWSISamplesResponse,
@@ -107,7 +107,7 @@ import {
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  diffExpPayload,
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  validDERequest,
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  validDEResponse
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- } from "./chunk-CP26DR4V.js";
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+ } from "./chunk-FIQM2YN4.js";
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  import {
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  boxplotPayload,
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  validBoxPlotRequest,
package/dist/termdb.DE.js CHANGED
@@ -2,7 +2,7 @@ import {
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  diffExpPayload,
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  validDERequest,
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  validDEResponse
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- } from "./chunk-CP26DR4V.js";
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+ } from "./chunk-FIQM2YN4.js";
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  import "./chunk-YNHC5SXO.js";
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  export {
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  diffExpPayload,
package/dist/wsimages.js CHANGED
@@ -2,7 +2,7 @@ import {
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  validWSImagesRequest,
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  validWSImagesResponse,
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  wsImagesPayload
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- } from "./chunk-CT6IBFVP.js";
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+ } from "./chunk-VUKRI3TG.js";
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  import "./chunk-YNHC5SXO.js";
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  export {
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  validWSImagesRequest,
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@sjcrh/proteinpaint-types",
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- "version": "2.148.1",
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+ "version": "2.149.0",
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  "type": "module",
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  "description": "Shared type definitions between ProteinPaint server and client code",
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  "main": "src/index.ts",
package/src/routes/termdb.DE.ts CHANGED
@@ -11,6 +11,8 @@ export type DERequest = {
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  min_count: number
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  /** Minimum total read count required for each sample */
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  min_total_count: number
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+ /** Minimum normalized expression threshold to retain only genes with sufficient expression */
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+ cpm_cutoff: number
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  /** Storage_type for storing data. Will deprecate text files */
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  storage_type: 'text' | 'HDF5'
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  /** Method of DE used wilcoxon/edgeR */
@@ -64,6 +66,8 @@ export type DEResponse = {
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  /** QL: Image describing the quality of the fitting from QL pipeline, this is only generated for edgeR not for wilcoxon method */
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  /** MDS: Image showing the MDS plot of samples from both groups, this is only generated for edgeR not for wilcoxon method */
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  images?: DEImage[]
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+ /** Biological coefficient of variation (BCV), this is only generated for edgeR*/
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+ bcv?: number
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  }
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  export type DataEntry = {
package/src/routes/wsimages.ts CHANGED
@@ -13,6 +13,7 @@ export type WSImagesResponse = {
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  wsiSessionId?: string
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  overlays?: Array<PredictionOverlay>
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  slide_dimensions: number[]
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+ mpp: number[]
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  status: string
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  error?: string
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  }