@sjcrh/proteinpaint-types 2.146.4-1 → 2.147.1

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Files changed (38) hide show
  1. package/dist/aiProjectSelectedWSImages.js +1 -1
  2. package/dist/aiProjectTrainModel.js +11 -0
  3. package/dist/brainImaging.js +1 -1
  4. package/dist/{chunk-75OHIZMS.js → chunk-225Q2ZUA.js} +2 -6
  5. package/dist/{chunk-74B7B2CV.js → chunk-2ZJS3NUY.js} +258 -82
  6. package/dist/{chunk-NBV7HYBA.js → chunk-3SKFYOKV.js} +407 -515
  7. package/dist/{chunk-G5KSPYQG.js → chunk-4SJC57Y6.js} +403 -511
  8. package/dist/{chunk-4VEXL32Q.js → chunk-75GS5ZG5.js} +381 -489
  9. package/dist/{chunk-2BHWLFKE.js → chunk-ETMCI34A.js} +2 -6
  10. package/dist/{chunk-7ICZFAGK.js → chunk-KSVIBMFQ.js} +1049 -797
  11. package/dist/{chunk-C246BWQE.js → chunk-NQUMNEVO.js} +258 -82
  12. package/dist/{chunk-4DNCZQOB.js → chunk-OOQIRLS5.js} +258 -82
  13. package/dist/{chunk-5KADNZH2.js → chunk-RA7IEGS4.js} +408 -516
  14. package/dist/chunk-UYJA4UM7.js +97 -0
  15. package/dist/{chunk-GCAZSDCW.js → chunk-WL7ZVGZS.js} +403 -511
  16. package/dist/correlationVolcano.js +1 -1
  17. package/dist/index.js +48 -40
  18. package/dist/samplewsimages.js +1 -1
  19. package/dist/termdb.boxplot.js +1 -1
  20. package/dist/termdb.categories.js +1 -1
  21. package/dist/termdb.cluster.js +1 -1
  22. package/dist/termdb.descrstats.js +1 -1
  23. package/dist/termdb.percentile.js +1 -1
  24. package/dist/termdb.termsbyids.js +1 -1
  25. package/dist/termdb.topTermsByType.js +1 -1
  26. package/package.json +1 -1
  27. package/src/dataset.ts +15 -12
  28. package/src/index.ts +2 -0
  29. package/src/routes/aiProjectSelectedWSImages.ts +0 -1
  30. package/src/routes/aiProjectTrainModel.ts +20 -0
  31. package/src/routes/brainImaging.ts +3 -3
  32. package/src/terms/categorical.ts +9 -90
  33. package/src/terms/q.ts +5 -1
  34. package/src/terms/qualitative.ts +73 -0
  35. package/src/terms/singleCellCellType.ts +6 -10
  36. package/src/terms/snp.ts +9 -13
  37. package/src/terms/term.ts +2 -2
  38. package/src/terms/tw.ts +3 -4
package/src/terms/snp.ts CHANGED
@@ -1,28 +1,24 @@
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- import type { BaseTW, MinBaseQ, BaseTerm, GroupSettingQ, TermGroupSetting } from '../index.ts'
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- import type { TermSettingInstance } from '../termsetting.ts'
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+ import type { TermGroupSetting, TermValues, BaseTerm } from '../index.ts'
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  /*
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  For term type 'snp'
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  */
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- export type SnpQ = MinBaseQ & GroupSettingQ
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-
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  export type SnpTerm = BaseTerm & {
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+ type: 'snp'
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+ id: string
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+ name: string
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  chr: string
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  start: number
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  stop: number
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  ref: string
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  alt: string[]
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  groupsetting: TermGroupSetting
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+ // may be used to hide
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+ values: TermValues
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  }
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- export type SnpTW = BaseTW & {
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- type: 'SnpTW'
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- q: SnpQ
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- term: SnpTerm
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- }
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-
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- export type SnpTermSettingInstance = TermSettingInstance & {
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- q: SnpQ
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- term: SnpTerm
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+ export type RawSnpTerm = SnpTerm & {
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+ groupsetting?: TermGroupSetting
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+ values?: TermValues
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  }
package/src/terms/term.ts CHANGED
@@ -1,10 +1,10 @@
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  import type { Filter } from '../filter.js'
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- import type { CategoricalTerm } from './categorical.js'
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  import type { ConditionTerm } from './condition.js'
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  import type { NumericTerm } from './numeric.js'
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  import type { GvTerm } from './geneVariant.js'
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  import type { SampleLstTerm } from './samplelst.js'
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  import type { SnpsTerm } from './snps.js'
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+ import type { QualTerm } from './qualitative.ts'
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  /**
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  * @param id term.id for dictionary terms, undefined for non-dictionary terms
@@ -42,7 +42,7 @@ export type BaseTerm = {
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  }
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  // NumericTerm includes integer, float, date, geneExpression, metaboliteIntensity, and other non-dict terms
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- export type Term = BaseTerm & (NumericTerm | CategoricalTerm | ConditionTerm | SampleLstTerm | SnpsTerm | GvTerm)
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+ export type Term = BaseTerm & (NumericTerm | ConditionTerm | SampleLstTerm | SnpsTerm | GvTerm | QualTerm)
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  /*** types supporting Term types ***/
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package/src/terms/tw.ts CHANGED
@@ -1,10 +1,9 @@
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  import type { SnpsQ, SnpsTW } from './snps.ts'
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- import type { SnpQ, SnpTW } from './snp.ts'
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  import type { ConditionQ, ConditionTW } from './condition.ts'
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  import type { SampleLstQ } from './samplelst.ts'
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- import type { CatTWTypes, CategoricalQ } from './categorical.ts'
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  import type { NumTW, NumericQ } from './numeric.ts'
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  import type { GvTW, GvQ } from './geneVariant.ts'
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+ import type { QualTW, QualQ } from './qualitative.ts'
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  export type BaseTW = {
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  id?: string
@@ -21,9 +20,9 @@ export type BaseTW = {
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  valueFilter?: any
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  }
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- export type TermWrapper = CatTWTypes | NumTW | GvTW | ConditionTW | SnpsTW | SnpTW
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+ export type TermWrapper = NumTW | GvTW | ConditionTW | SnpsTW | QualTW
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- export type Q = CategoricalQ | NumericQ | GvQ | ConditionQ | SnpsQ | SnpQ | SampleLstQ // | other q
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+ export type Q = NumericQ | GvQ | ConditionQ | SnpsQ | SampleLstQ | QualQ // | other q
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  //export type TermWrapper = CategoricalTW | NumericTW | SnpsTW | (BaseTW & { term: Term; q: Q })
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  export type TwLst = TermWrapper[]