@sjcrh/proteinpaint-types 2.143.0 → 2.145.0

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Files changed (10) hide show
  1. package/dist/{chunk-N7C4SRFX.js → chunk-2WSENLMK.js} +17 -1
  2. package/dist/{chunk-TCEHHLIZ.js → chunk-D6IBJJ63.js} +11 -7
  3. package/dist/gdc.grin2.js +1 -1
  4. package/dist/grin2.js +1 -1
  5. package/dist/index.js +2 -2
  6. package/package.json +1 -1
  7. package/src/routes/gdc.grin2.ts +7 -0
  8. package/src/routes/grin2.ts +5 -2
  9. package/src/terms/geneVariant.ts +1 -10
  10. package/src/terms/samplelst.ts +0 -7
package/dist/{chunk-N7C4SRFX.js → chunk-2WSENLMK.js} RENAMED
@@ -325,7 +325,7 @@ var validRunGRIN2Request = (input) => {
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  const errors = [];
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  const __is = (input2) => {
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  const $join = import_typia.createValidate.join;
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- const $io0 = (input3) => "object" === typeof input3.caseFiles && null !== input3.caseFiles && false === Array.isArray(input3.caseFiles) && $io1(input3.caseFiles) && (void 0 === input3.mafOptions || "object" === typeof input3.mafOptions && null !== input3.mafOptions && false === Array.isArray(input3.mafOptions) && $io3(input3.mafOptions)) && (void 0 === input3.cnvOptions || "object" === typeof input3.cnvOptions && null !== input3.cnvOptions && false === Array.isArray(input3.cnvOptions) && $io4(input3.cnvOptions));
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+ const $io0 = (input3) => "object" === typeof input3.caseFiles && null !== input3.caseFiles && false === Array.isArray(input3.caseFiles) && $io1(input3.caseFiles) && (void 0 === input3.mafOptions || "object" === typeof input3.mafOptions && null !== input3.mafOptions && false === Array.isArray(input3.mafOptions) && $io3(input3.mafOptions)) && (void 0 === input3.cnvOptions || "object" === typeof input3.cnvOptions && null !== input3.cnvOptions && false === Array.isArray(input3.cnvOptions) && $io4(input3.cnvOptions)) && (void 0 === input3.devicePixelRatio || "number" === typeof input3.devicePixelRatio) && (void 0 === input3.plot_width || "number" === typeof input3.plot_width) && (void 0 === input3.plot_height || "number" === typeof input3.plot_height) && (void 0 === input3.pngDotRadius || "number" === typeof input3.pngDotRadius);
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  const $io1 = (input3) => Object.keys(input3).every((key) => {
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  const value = input3[key];
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  if (void 0 === value)
@@ -367,6 +367,22 @@ var validRunGRIN2Request = (input) => {
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  path: _path2 + ".cnvOptions",
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  expected: "(__type.o3 | undefined)",
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  value: input3.cnvOptions
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+ }), void 0 === input3.devicePixelRatio || "number" === typeof input3.devicePixelRatio || $report(_exceptionable2, {
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+ path: _path2 + ".devicePixelRatio",
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+ expected: "(number | undefined)",
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+ value: input3.devicePixelRatio
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+ }), void 0 === input3.plot_width || "number" === typeof input3.plot_width || $report(_exceptionable2, {
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+ path: _path2 + ".plot_width",
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+ expected: "(number | undefined)",
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+ value: input3.plot_width
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+ }), void 0 === input3.plot_height || "number" === typeof input3.plot_height || $report(_exceptionable2, {
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+ path: _path2 + ".plot_height",
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+ expected: "(number | undefined)",
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+ value: input3.plot_height
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+ }), void 0 === input3.pngDotRadius || "number" === typeof input3.pngDotRadius || $report(_exceptionable2, {
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+ path: _path2 + ".pngDotRadius",
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+ expected: "(number | undefined)",
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+ value: input3.pngDotRadius
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  })].every((flag) => flag);
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  const $vo1 = (input3, _path2, _exceptionable2 = true) => [false === _exceptionable2 || Object.keys(input3).map((key) => {
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  const value = input3[key];
package/dist/{chunk-TCEHHLIZ.js → chunk-D6IBJJ63.js} RENAMED
@@ -21,7 +21,7 @@ var validGRIN2Request = (input) => {
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  const errors = [];
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  const __is = (input2) => {
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  const $join = import_typia.createValidate.join;
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- const $io0 = (input3) => "string" === typeof input3.genome && "string" === typeof input3.dslabel && (void 0 === input3.devicePixelRatio || "number" === typeof input3.devicePixelRatio) && (void 0 === input3.plot_width || "number" === typeof input3.plot_width) && (void 0 === input3.plot_height || "number" === typeof input3.plot_height) && true && (void 0 === input3.snvindelOptions || "object" === typeof input3.snvindelOptions && null !== input3.snvindelOptions && false === Array.isArray(input3.snvindelOptions) && $io1(input3.snvindelOptions)) && (void 0 === input3.cnvOptions || "object" === typeof input3.cnvOptions && null !== input3.cnvOptions && false === Array.isArray(input3.cnvOptions) && $io2(input3.cnvOptions)) && (void 0 === input3.fusionOptions || "object" === typeof input3.fusionOptions && null !== input3.fusionOptions && false === Array.isArray(input3.fusionOptions) && $io3(input3.fusionOptions));
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+ const $io0 = (input3) => "string" === typeof input3.genome && "string" === typeof input3.dslabel && (void 0 === input3.devicePixelRatio || "number" === typeof input3.devicePixelRatio) && (void 0 === input3.width || "number" === typeof input3.width) && (void 0 === input3.height || "number" === typeof input3.height) && (void 0 === input3.pngDotRadius || "number" === typeof input3.pngDotRadius) && true && (void 0 === input3.snvindelOptions || "object" === typeof input3.snvindelOptions && null !== input3.snvindelOptions && false === Array.isArray(input3.snvindelOptions) && $io1(input3.snvindelOptions)) && (void 0 === input3.cnvOptions || "object" === typeof input3.cnvOptions && null !== input3.cnvOptions && false === Array.isArray(input3.cnvOptions) && $io2(input3.cnvOptions)) && (void 0 === input3.fusionOptions || "object" === typeof input3.fusionOptions && null !== input3.fusionOptions && false === Array.isArray(input3.fusionOptions) && $io3(input3.fusionOptions));
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  const $io1 = (input3) => (void 0 === input3.minTotalDepth || "number" === typeof input3.minTotalDepth) && (void 0 === input3.minAltAlleleCount || "number" === typeof input3.minAltAlleleCount) && (void 0 === input3.consequences || Array.isArray(input3.consequences) && input3.consequences.every((elem) => "string" === typeof elem)) && (void 0 === input3.hyperMutator || "number" === typeof input3.hyperMutator);
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  const $io2 = (input3) => (void 0 === input3.lossThreshold || "number" === typeof input3.lossThreshold) && (void 0 === input3.gainThreshold || "number" === typeof input3.gainThreshold) && (void 0 === input3.maxSegLength || "number" === typeof input3.maxSegLength) && (void 0 === input3.hyperMutator || "number" === typeof input3.hyperMutator);
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  const $io3 = (input3) => Object.keys(input3).every((key) => {
@@ -50,14 +50,18 @@ var validGRIN2Request = (input) => {
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  path: _path2 + ".devicePixelRatio",
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  expected: "(number | undefined)",
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  value: input3.devicePixelRatio
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- }), void 0 === input3.plot_width || "number" === typeof input3.plot_width || $report(_exceptionable2, {
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- path: _path2 + ".plot_width",
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+ }), void 0 === input3.width || "number" === typeof input3.width || $report(_exceptionable2, {
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+ path: _path2 + ".width",
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  expected: "(number | undefined)",
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- value: input3.plot_width
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- }), void 0 === input3.plot_height || "number" === typeof input3.plot_height || $report(_exceptionable2, {
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- path: _path2 + ".plot_height",
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+ value: input3.width
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+ }), void 0 === input3.height || "number" === typeof input3.height || $report(_exceptionable2, {
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+ path: _path2 + ".height",
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  expected: "(number | undefined)",
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- value: input3.plot_height
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+ value: input3.height
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+ }), void 0 === input3.pngDotRadius || "number" === typeof input3.pngDotRadius || $report(_exceptionable2, {
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+ path: _path2 + ".pngDotRadius",
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+ expected: "(number | undefined)",
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+ value: input3.pngDotRadius
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  }), true, void 0 === input3.snvindelOptions || ("object" === typeof input3.snvindelOptions && null !== input3.snvindelOptions && false === Array.isArray(input3.snvindelOptions) || $report(_exceptionable2, {
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  path: _path2 + ".snvindelOptions",
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  expected: "(__type | undefined)",
package/dist/gdc.grin2.js CHANGED
@@ -5,7 +5,7 @@ import {
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  validGdcGRIN2listResponse,
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  validRunGRIN2Request,
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  validRunGRIN2Response
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- } from "./chunk-N7C4SRFX.js";
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+ } from "./chunk-2WSENLMK.js";
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  import "./chunk-YNHC5SXO.js";
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  export {
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  gdcGRIN2listPayload,
package/dist/grin2.js CHANGED
@@ -2,7 +2,7 @@ import {
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  GRIN2Payload,
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  validGRIN2Request,
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  validGRIN2Response
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- } from "./chunk-TCEHHLIZ.js";
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+ } from "./chunk-D6IBJJ63.js";
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  import "./chunk-YNHC5SXO.js";
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  export {
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  GRIN2Payload,
package/dist/index.js CHANGED
@@ -177,7 +177,7 @@ import {
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  GRIN2Payload,
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  validGRIN2Request,
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  validGRIN2Response
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- } from "./chunk-TCEHHLIZ.js";
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+ } from "./chunk-D6IBJJ63.js";
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  import {
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  healthcheckPayload,
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  validHealthCheckRequest,
@@ -230,7 +230,7 @@ import {
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  validGdcGRIN2listResponse,
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  validRunGRIN2Request,
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  validRunGRIN2Response
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- } from "./chunk-N7C4SRFX.js";
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+ } from "./chunk-2WSENLMK.js";
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  import {
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  gdcMafPayload,
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  validGdcMafRequest,
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@sjcrh/proteinpaint-types",
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- "version": "2.143.0",
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+ "version": "2.145.0",
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  "type": "module",
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  "description": "Shared type definitions between ProteinPaint server and client code",
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  "main": "src/index.ts",
package/src/routes/gdc.grin2.ts CHANGED
@@ -120,6 +120,13 @@ export type RunGRIN2Request = {
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  /** Hypermutator max cut off for CNVs per case */
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  hyperMutator?: number // Default: 500
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  }
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+ /** Device pixel ratio for rendering */
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+ devicePixelRatio?: number // 2
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+ /** Plot dimensions */
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+ plot_width?: number // 1000
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+ plot_height?: number // 400
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+ /** Radius of the PNG rendered dots */
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+ pngDotRadius?: number // 2
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  }
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  /** Error entry from failed file downloads */
package/src/routes/grin2.ts CHANGED
@@ -21,10 +21,13 @@ export type GRIN2Request = {
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  devicePixelRatio?: number
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  /** Desired plot width in pixels (default: 1000) */
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- plot_width?: number
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+ width?: number
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  /** Desired plot height in pixels (default: 400) */
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- plot_height?: number
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+ height?: number
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+
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+ /** Radius of the PNG rendered dots (default: 2) */
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+ pngDotRadius?: number
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  /** Filter from existing PP infrastructure */
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  filter?: any // Filter object passed to get_samples(filter, ds)
package/src/terms/geneVariant.ts CHANGED
@@ -1,5 +1,4 @@
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- import type { MinBaseQ, BaseTerm, TermGroupSetting, BaseTW, TermValues, BaseGroupSet, FilterGroup } from '../index.ts'
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- import type { TermSettingInstance } from '../termsetting.ts'
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+ import type { MinBaseQ, BaseTerm, TermGroupSetting, BaseTW, TermValues, BaseGroupSet } from '../index.ts'
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  // q types
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  export type GvBaseQ = MinBaseQ & {
@@ -101,14 +100,6 @@ export type GvCustomGsTW = BaseTW & {
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  export type RawGvTW = RawGvValuesTW | RawGvPredefinedGsTW | RawGvCustomGsTW
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  export type GvTW = GvValuesTW | GvPredefinedGsTW | GvCustomGsTW
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- // termsetting types
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- export type GeneVariantTermSettingInstance = TermSettingInstance & {
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- q: GvQ
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- term: GvTerm
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- category2samplecount: any
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- groups: FilterGroup[] // will store groups created in edit UI
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- }
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-
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  // miscellaneous types
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  export type DtTerm = {
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  id: string
package/src/terms/samplelst.ts CHANGED
@@ -1,6 +1,5 @@
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  import type { BaseTerm, MinBaseQ } from '../index.ts'
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  import type { TermWrapper } from './tw.ts'
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- import type { TermSettingInstance } from '../termsetting.ts'
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  /*
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  --------EXPORTED--------
@@ -33,9 +32,3 @@ export type SampleLstTW = TermWrapper & {
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  q: SampleLstQ
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  term: SampleLstTerm
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  }
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-
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- //temporary, will eventually change to SampleLstHandler
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- export type SampleLstTermSettingInstance = TermSettingInstance & {
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- q: SampleLstQ
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- term: SampleLstTerm
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- }